Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.guess Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.guess sh: i686-pc-linux-gnu sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.sub i686-pc-linux-gnu Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.sub i686-pc-linux-gnu sh: i686-pc-linux-gnu ================================================================================ ================================================================================ Starting Configure Run at Mon Feb 12 10:57:06 2007 Configure Options: --with-vendor-compilers=intel --with-blas-lapack-dir=/lsftmp/g0306332/inter/mkl/ --with-x=0 --with-shared --with-mpi-dir=/opt/mpich/myrinet/intel/ --with-debugging=0 --download-hypre=1 --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions Working directory: /nas/lsftmp/g0306332/petsc-2.3.2-p8 Python version: 2.2.3 (#1, Sep 30 2004, 22:31:19) [GCC 3.2.3 20030502 (Red Hat Linux 3.2.3-42)] ================================================================================ Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/framework.py:807) TESTING: configureExternalPackagesDir from config.framework(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/framework.py:807) ================================================================================ TEST configureLibrary from PETSc.packages.PVODE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.PVODE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/PVODE.py:10) Find a PVODE installation and check if it can work with PETSc ================================================================================ TEST configureLibrary from PETSc.packages.NetCDF(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/NetCDF.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/NetCDF.py:10) Find a NetCDF installation and check if it can work with PETSc ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /opt/mpich/myrinet/intel/bin/gdb...not found Checking for program /opt/gridengine/bin/glinux/gdb...not found Checking for program /usr/java/jdk1.5.0/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/globus/bin/gdb...not found Checking for program /opt/globus/sbin/gdb...not found Checking for program /usr/lsf6/bin/gdb...not found Checking for program /opt/mpich/myrinet/intel/bin/gdb...not found Checking for program /opt/gridengine/bin/glinux/gdb...not found Checking for program /usr/kerberos/bin/gdb...not found Checking for program /usr/java/jdk1.5.0/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /usr/lsf6/bin/gdb...not found Checking for program /usr/lsf6/etc/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /opt/mpich/myrinet/intel/bin/dbx...not found Checking for program /opt/gridengine/bin/glinux/dbx...not found Checking for program /usr/java/jdk1.5.0/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/globus/bin/dbx...not found Checking for program /opt/globus/sbin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /opt/mpich/myrinet/intel/bin/dbx...not found Checking for program /opt/gridengine/bin/glinux/dbx...not found Checking for program /usr/kerberos/bin/dbx...not found Checking for program /usr/java/jdk1.5.0/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /usr/lsf6/etc/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /app1/linux/amber8-2/exe/dbx...not found Checking for program /opt/ganglia/bin/dbx...not found Checking for program /opt/rocks/bin/dbx...not found Checking for program /opt/rocks/sbin/dbx...not found Checking for program /app1/linux/bin/dbx...not found Checking for program /app1/common/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /app1/linux/amber8-2/exe/dbx...not found Checking for program /opt/ganglia/bin/dbx...not found Checking for program /opt/rocks/bin/dbx...not found Checking for program /opt/rocks/sbin/dbx...not found Checking for program /app1/linux/bin/dbx...not found Checking for program /app1/common/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /home/enduser/g0306332/dbx...not found Checking for program /opt/mpich/myrinet/intel/bin/xdb...not found Checking for program /opt/gridengine/bin/glinux/xdb...not found Checking for program /usr/java/jdk1.5.0/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/globus/bin/xdb...not found Checking for program /opt/globus/sbin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /opt/mpich/myrinet/intel/bin/xdb...not found Checking for program /opt/gridengine/bin/glinux/xdb...not found Checking for program /usr/kerberos/bin/xdb...not found Checking for program /usr/java/jdk1.5.0/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /usr/lsf6/etc/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /app1/linux/amber8-2/exe/xdb...not found Checking for program /opt/ganglia/bin/xdb...not found Checking for program /opt/rocks/bin/xdb...not found Checking for program /opt/rocks/sbin/xdb...not found Checking for program /app1/linux/bin/xdb...not found Checking for program /app1/common/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /app1/linux/amber8-2/exe/xdb...not found Checking for program /opt/ganglia/bin/xdb...not found Checking for program /opt/rocks/bin/xdb...not found Checking for program /opt/rocks/sbin/xdb...not found Checking for program /app1/linux/bin/xdb...not found Checking for program /app1/common/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /home/enduser/g0306332/xdb...not found ================================================================================ TEST configureMake from PETSc.utilities.Make(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Make.py:21) TESTING: configureMake from PETSc.utilities.Make(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Make.py:21) Check various things about make Checking for program /opt/mpich/myrinet/intel/bin/make...not found Checking for program /opt/gridengine/bin/glinux/make...not found Checking for program /usr/java/jdk1.5.0/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/globus/bin/make...not found Checking for program /opt/globus/sbin/make...not found Checking for program /usr/lsf6/bin/make...not found Checking for program /opt/mpich/myrinet/intel/bin/make...not found Checking for program /opt/gridengine/bin/glinux/make...not found Checking for program /usr/kerberos/bin/make...not found Checking for program /usr/java/jdk1.5.0/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /usr/lsf6/bin/make...not found Checking for program /usr/lsf6/etc/make...not found Checking for program /usr/local/bin/make...not found Checking for program /bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" sh: strings /usr/bin/make Executing: strings /usr/bin/make sh: /lib/ld-linux.so.2 libc.so.6 strcpy mkstemp64 waitpid getloadavg __strtod_internal stdout getlogin readdir64 sigemptyset strerror fdopen memmove getopt_long getenv setlinebuf __rawmemchr __strtol_internal getpid qsort fgets memcpy dup2 feof malloc remove optarg opterr fflush sigaddset abort pipe strrchr __ctype_tolower_loc kill ctime strcat dcgettext chdir optind stdin wait fnmatch ferror strncmp unlink realloc __strdup sscanf sigaction fread __xstat64 gettimeofday localtime memset opendir __assert_fail strcmp getcwd strsignal getpwnam sprintf fclose setlocale stderr vfork __ctype_b_loc fwrite... ... PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) $(AS) $(ASFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) 3.79.1 i686-pc-linux-gnu /bin/sh #;"*?[]&|<>(){}$`^ -c .out .a .ln .o .c .cc .C .cpp .p .f .F .r .y .l .s .S .mod .sym .def .h .info .dvi .tex .texinfo .texi .txinfo .w .ch .web .sh .elc .el Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC} ${SOBJSC})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureBitKeeper from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:23) TESTING: configureBitKeeper from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:23) Find the BitKeeper executable Checking for program /opt/mpich/myrinet/intel/bin/bk...not found Checking for program /opt/gridengine/bin/glinux/bk...not found Checking for program /usr/java/jdk1.5.0/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/globus/bin/bk...not found Checking for program /opt/globus/sbin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /opt/mpich/myrinet/intel/bin/bk...not found Checking for program /opt/gridengine/bin/glinux/bk...not found Checking for program /usr/kerberos/bin/bk...not found Checking for program /usr/java/jdk1.5.0/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /usr/lsf6/etc/bk...not found Checking for program /usr/local/bin/bk...not found Checking for program /bin/bk...not found Checking for program /usr/bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /app1/linux/amber8-2/exe/bk...not found Checking for program /opt/ganglia/bin/bk...not found Checking for program /opt/rocks/bin/bk...not found Checking for program /opt/rocks/sbin/bk...not found Checking for program /app1/linux/bin/bk...not found Checking for program /app1/common/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /app1/linux/amber8-2/exe/bk...not found Checking for program /opt/ganglia/bin/bk...not found Checking for program /opt/rocks/bin/bk...not found Checking for program /opt/rocks/sbin/bk...not found Checking for program /app1/linux/bin/bk...not found Checking for program /app1/common/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /home/enduser/g0306332/bk...not found ================================================================================ TEST configureCVS from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:30) TESTING: configureCVS from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:30) Find the CVS executable Checking for program /opt/mpich/myrinet/intel/bin/cvs...not found Checking for program /opt/gridengine/bin/glinux/cvs...not found Checking for program /usr/java/jdk1.5.0/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/globus/bin/cvs...not found Checking for program /opt/globus/sbin/cvs...not found Checking for program /usr/lsf6/bin/cvs...not found Checking for program /opt/mpich/myrinet/intel/bin/cvs...not found Checking for program /opt/gridengine/bin/glinux/cvs...not found Checking for program /usr/kerberos/bin/cvs...not found Checking for program /usr/java/jdk1.5.0/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /usr/lsf6/bin/cvs...not found Checking for program /usr/lsf6/etc/cvs...not found Checking for program /usr/local/bin/cvs...not found Checking for program /bin/cvs...not found Checking for program /usr/bin/cvs...found Defined make macro "CVS" to "cvs" ================================================================================ TEST configureSubversion from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:35) TESTING: configureSubversion from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:35) Find the Subversion executable Checking for program /opt/mpich/myrinet/intel/bin/svn...not found Checking for program /opt/gridengine/bin/glinux/svn...not found Checking for program /usr/java/jdk1.5.0/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/globus/bin/svn...not found Checking for program /opt/globus/sbin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /opt/mpich/myrinet/intel/bin/svn...not found Checking for program /opt/gridengine/bin/glinux/svn...not found Checking for program /usr/kerberos/bin/svn...not found Checking for program /usr/java/jdk1.5.0/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /usr/lsf6/etc/svn...not found Checking for program /usr/local/bin/svn...not found Checking for program /bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /usr/X11R6/bin/svn...not found Checking for program /app1/linux/amber8-2/exe/svn...not found Checking for program /opt/ganglia/bin/svn...not found Checking for program /opt/rocks/bin/svn...not found Checking for program /opt/rocks/sbin/svn...not found Checking for program /app1/linux/bin/svn...not found Checking for program /app1/common/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /app1/linux/amber8-2/exe/svn...not found Checking for program /opt/ganglia/bin/svn...not found Checking for program /opt/rocks/bin/svn...not found Checking for program /opt/rocks/sbin/svn...not found Checking for program /app1/linux/bin/svn...not found Checking for program /app1/common/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /usr/X11R6/bin/svn...not found Checking for program /home/enduser/g0306332/svn...not found ================================================================================ TEST configureMkdir from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:21) TESTING: configureMkdir from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:21) Make sure we can have mkdir automatically make intermediate directories Checking for program /opt/mpich/myrinet/intel/bin/mkdir...not found Checking for program /opt/gridengine/bin/glinux/mkdir...not found Checking for program /usr/java/jdk1.5.0/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/globus/bin/mkdir...not found Checking for program /opt/globus/sbin/mkdir...not found Checking for program /usr/lsf6/bin/mkdir...not found Checking for program /opt/mpich/myrinet/intel/bin/mkdir...not found Checking for program /opt/gridengine/bin/glinux/mkdir...not found Checking for program /usr/kerberos/bin/mkdir...not found Checking for program /usr/java/jdk1.5.0/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /usr/lsf6/bin/mkdir...not found Checking for program /usr/lsf6/etc/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /bin/mkdir...found sh: /bin/mkdir -p .conftest/tmp Executing: /bin/mkdir -p .conftest/tmp sh: Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configurePrograms from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:43) TESTING: configurePrograms from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:43) Check for the programs needed to build and run PETSc Checking for program /opt/mpich/myrinet/intel/bin/sh...not found Checking for program /opt/gridengine/bin/glinux/sh...not found Checking for program /usr/java/jdk1.5.0/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/globus/bin/sh...not found Checking for program /opt/globus/sbin/sh...not found Checking for program /usr/lsf6/bin/sh...not found Checking for program /opt/mpich/myrinet/intel/bin/sh...not found Checking for program /opt/gridengine/bin/glinux/sh...not found Checking for program /usr/kerberos/bin/sh...not found Checking for program /usr/java/jdk1.5.0/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /usr/lsf6/bin/sh...not found Checking for program /usr/lsf6/etc/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /opt/mpich/myrinet/intel/bin/sed...not found Checking for program /opt/gridengine/bin/glinux/sed...not found Checking for program /usr/java/jdk1.5.0/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/globus/bin/sed...not found Checking for program /opt/globus/sbin/sed...not found Checking for program /usr/lsf6/bin/sed...not found Checking for program /opt/mpich/myrinet/intel/bin/sed...not found Checking for program /opt/gridengine/bin/glinux/sed...not found Checking for program /usr/kerberos/bin/sed...not found Checking for program /usr/java/jdk1.5.0/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /usr/lsf6/bin/sed...not found Checking for program /usr/lsf6/etc/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" Checking for program /opt/mpich/myrinet/intel/bin/mv...not found Checking for program /opt/gridengine/bin/glinux/mv...not found Checking for program /usr/java/jdk1.5.0/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/globus/bin/mv...not found Checking for program /opt/globus/sbin/mv...not found Checking for program /usr/lsf6/bin/mv...not found Checking for program /opt/mpich/myrinet/intel/bin/mv...not found Checking for program /opt/gridengine/bin/glinux/mv...not found Checking for program /usr/kerberos/bin/mv...not found Checking for program /usr/java/jdk1.5.0/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /usr/lsf6/bin/mv...not found Checking for program /usr/lsf6/etc/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /opt/mpich/myrinet/intel/bin/cp...not found Checking for program /opt/gridengine/bin/glinux/cp...not found Checking for program /usr/java/jdk1.5.0/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/globus/bin/cp...not found Checking for program /opt/globus/sbin/cp...not found Checking for program /usr/lsf6/bin/cp...not found Checking for program /opt/mpich/myrinet/intel/bin/cp...not found Checking for program /opt/gridengine/bin/glinux/cp...not found Checking for program /usr/kerberos/bin/cp...not found Checking for program /usr/java/jdk1.5.0/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /usr/lsf6/bin/cp...not found Checking for program /usr/lsf6/etc/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /opt/mpich/myrinet/intel/bin/grep...not found Checking for program /opt/gridengine/bin/glinux/grep...not found Checking for program /usr/java/jdk1.5.0/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/globus/bin/grep...not found Checking for program /opt/globus/sbin/grep...not found Checking for program /usr/lsf6/bin/grep...not found Checking for program /opt/mpich/myrinet/intel/bin/grep...not found Checking for program /opt/gridengine/bin/glinux/grep...not found Checking for program /usr/kerberos/bin/grep...not found Checking for program /usr/java/jdk1.5.0/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /usr/lsf6/bin/grep...not found Checking for program /usr/lsf6/etc/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /opt/mpich/myrinet/intel/bin/rm...not found Checking for program /opt/gridengine/bin/glinux/rm...not found Checking for program /usr/java/jdk1.5.0/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/globus/bin/rm...not found Checking for program /opt/globus/sbin/rm...not found Checking for program /usr/lsf6/bin/rm...not found Checking for program /opt/mpich/myrinet/intel/bin/rm...not found Checking for program /opt/gridengine/bin/glinux/rm...not found Checking for program /usr/kerberos/bin/rm...not found Checking for program /usr/java/jdk1.5.0/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /usr/lsf6/bin/rm...not found Checking for program /usr/lsf6/etc/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /opt/mpich/myrinet/intel/bin/diff...not found Checking for program /opt/gridengine/bin/glinux/diff...not found Checking for program /usr/java/jdk1.5.0/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/globus/bin/diff...not found Checking for program /opt/globus/sbin/diff...not found Checking for program /usr/lsf6/bin/diff...not found Checking for program /opt/mpich/myrinet/intel/bin/diff...not found Checking for program /opt/gridengine/bin/glinux/diff...not found Checking for program /usr/kerberos/bin/diff...not found Checking for program /usr/java/jdk1.5.0/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /usr/lsf6/bin/diff...not found Checking for program /usr/lsf6/etc/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /bin/diff...not found Checking for program /usr/bin/diff...found sh: /usr/bin/diff -w diff1 diff2 Executing: /usr/bin/diff -w diff1 diff2 sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/enduser/g0306332/ps...not found Checking for program /opt/mpich/myrinet/intel/bin/gzip...not found Checking for program /opt/gridengine/bin/glinux/gzip...not found Checking for program /usr/java/jdk1.5.0/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/globus/bin/gzip...not found Checking for program /opt/globus/sbin/gzip...not found Checking for program /usr/lsf6/bin/gzip...not found Checking for program /opt/mpich/myrinet/intel/bin/gzip...not found Checking for program /opt/gridengine/bin/glinux/gzip...not found Checking for program /usr/kerberos/bin/gzip...not found Checking for program /usr/java/jdk1.5.0/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /usr/lsf6/bin/gzip...not found Checking for program /usr/lsf6/etc/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /bin/gzip...found Defined make macro "GZIP" to "/bin/gzip" Defined "HAVE_GZIP" to "1" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:39) TESTING: configureCLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:39) Choose between C and C++ bindings ================================================================================ TEST configureLanguageSupport from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:45) TESTING: configureLanguageSupport from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:45) Check c-support c++-support and other misc tests Allowing C++ name mangling C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureExternC from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:62) TESTING: configureExternC from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:62) Protect C bindings from C++ mangling Defined "USE_EXTERN_CXX" to " " ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:68) TESTING: configureFortranLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:68) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:34) TESTING: configureDirectories from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:34) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 2 #define PETSC_VERSION_MINOR 3 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 8 #define PETSC_VERSION_DATE "September, 1, 2006" #define PETSC_VERSION_PATCH_DATE "Tue Jan 2 14:33:59 PST 2007" #define PETSC_VERSION_HG "ebeddcedcc065e32fc252af32cf1d01ed4fc7a80" Defined make macro "DIR" to "/nas/lsftmp/g0306332/petsc-2.3.2-p8" Defined "DIR" to "/nas/lsftmp/g0306332/petsc-2.3.2-p8" sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.guess Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.guess sh: i686-pc-linux-gnu sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.sub i686-pc-linux-gnu Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.sub i686-pc-linux-gnu sh: i686-pc-linux-gnu ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:112) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:112) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:119) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:119) This is a tarball installation ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST configureETags from PETSc.utilities.Etags(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST checkVendor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:208) TESTING: checkVendor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:208) Determine the compiler vendor Compiler vendor is "intel" ================================================================================ TEST checkInitialFlags from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:218) TESTING: checkInitialFlags from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:218) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized executableFlags to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:326) TESTING: checkCCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:326) Locate a functional C compiler Checking for program /opt/mpich/myrinet/intel/bin/mpicc...found Defined make macro "CC" to "/opt/mpich/myrinet/intel/bin/mpicc" Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest conftest.o sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest conftest.o sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:375) TESTING: checkCPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:375) Locate a functional C preprocessor Checking for program /opt/mpich/myrinet/intel/bin/mpicc...found Defined make macro "CPP" to "/opt/mpich/myrinet/intel/bin/mpicc -E" Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/stdlib.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; #line 870 "/usr/include/stdlib.h" #line 901 "/usr/include/stdlib.h" #line 911 "/usr/include/stdlib.h" extern int getloadavg (double __loadavg[], int __nelem) ; #line 4 "conftest.c" Popping language C ================================================================================ TEST checkCxxCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:478) TESTING: checkCxxCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:478) Locate a functional Cxx compiler Checking for program /opt/mpich/myrinet/intel/bin/mpicxx...found Defined make macro "CXX" to "/opt/mpich/myrinet/intel/bin/mpicxx" Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc sh: sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest conftest.o sh: sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest conftest.o sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:530) TESTING: checkCxxPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:530) Locate a functional Cxx preprocessor Checking for program /opt/mpich/myrinet/intel/bin/mpicxx...found Defined make macro "CXXCPP" to "/opt/mpich/myrinet/intel/bin/mpicxx -E" Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -E conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -E conftest.cc sh: #line 1 "conftest.cc" #line 1 "confdefs.h" #line 2 "conftest.cc" #line 1 "conffix.h" extern "C" { } #line 3 "conftest.cc" #line 1 "/opt/intel/compiler70/ia32/include/cstdlib" #line 1 "/opt/intel/compiler70/ia32/include/yvals.h" #line 1 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 1 "/opt/intel/compiler70/ia32/include/xarg.h" typedef char * va_list; typedef va_list __gnuc_va_list; #line 114 "/opt/intel/compiler70/ia32/include/xarg.h" #line 30 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 43 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 8 "/opt/intel/compiler... ... bs(_Left)); } inline ldiv_t (div)(long _Left, long _Right) { return (ldiv(_Left, _Right)); } using ::size_t; using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; } #line 4 "conftest.cc" Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:638) TESTING: checkFortranCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:638) Locate a functional Fortran compiler Checking for program /opt/mpich/myrinet/intel/bin/mpif90...found Defined make macro "FC" to "/opt/mpich/myrinet/intel/bin/mpif90" Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest conftest.o sh: sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest conftest.o sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:673) TESTING: checkFortranComments from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:673) Make sure fortran comment "!" works Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 5 Lines Compiled } Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkBrokenMpif90 from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:682) TESTING: checkBrokenMpif90 from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:682) mpif90 from mpich1 and older c-preprocessor combinations misbehave Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Added FC compiler flag -I. Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:722) TESTING: checkPIC from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:722) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Trying C compiler flag -PIC sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -PIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -PIC conftest.o sh: Possible ERROR while running linker: icc: Command line warning: ignoring option '-P'; no argument required output: error message = {icc: Command line warning: ignoring option '-P'; no argument required } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -PIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting C linker flag -PIC due to icc: Command line warning: ignoring option '-P'; no argument required Rejected C compiler flag -PIC because linker cannot handle it Trying C compiler flag -fPIC sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o sh: Valid C linker flag -fPIC Adding C compiler flag -fPIC sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Added C compiler flag -fPIC Popping language C Pushing language Cxx Trying Cxx compiler flag -PIC sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -PIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -PIC conftest.o sh: Possible ERROR while running linker: icc: Command line warning: ignoring option '-P'; no argument required output: error message = {icc: Command line warning: ignoring option '-P'; no argument required } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -PIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting Cxx linker flag -PIC due to icc: Command line warning: ignoring option '-P'; no argument required Rejected Cxx compiler flag -PIC because linker cannot handle it Trying Cxx compiler flag -fPIC sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -fPIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -fPIC conftest.o sh: Valid Cxx linker flag -fPIC Adding Cxx compiler flag -fPIC sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -fPIC conftest.cc sh: Added Cxx compiler flag -fPIC Popping language Cxx Pushing language FC Trying FC compiler flag -PIC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -PIC -I. conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -PIC -I. conftest.o sh: Possible ERROR while running linker: ifc: Command line warning: ignoring option '-P'; no argument required output: error message = {ifc: Command line warning: ignoring option '-P'; no argument required } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -PIC -I. conftest.o Source: program main end Rejecting FC linker flag -PIC due to ifc: Command line warning: ignoring option '-P'; no argument required Rejected FC compiler flag -PIC because linker cannot handle it Trying FC compiler flag -fPIC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -fPIC -I. conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -fPIC -I. conftest.o sh: Valid FC linker flag -fPIC Adding FC compiler flag -fPIC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Added FC compiler flag -fPIC Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:762) TESTING: checkLargeFileIO from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:762) ================================================================================ TEST checkArchiver from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:852) TESTING: checkArchiver from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:852) Check that the archiver exists and can make a library usable by the compiler Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Checking for program /opt/mpich/myrinet/intel/bin/ar...not found Checking for program /opt/gridengine/bin/glinux/ar...not found Checking for program /usr/java/jdk1.5.0/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/globus/bin/ar...not found Checking for program /opt/globus/sbin/ar...not found Checking for program /usr/lsf6/bin/ar...not found Checking for program /opt/mpich/myrinet/intel/bin/ar...not found Checking for program /opt/gridengine/bin/glinux/ar...not found Checking for program /usr/kerberos/bin/ar...not found Checking for program /usr/java/jdk1.5.0/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /usr/lsf6/bin/ar...not found Checking for program /usr/lsf6/etc/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /opt/mpich/myrinet/intel/bin/ranlib...not found Checking for program /opt/gridengine/bin/glinux/ranlib...not found Checking for program /usr/java/jdk1.5.0/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/globus/bin/ranlib...not found Checking for program /opt/globus/sbin/ranlib...not found Checking for program /usr/lsf6/bin/ranlib...not found Checking for program /opt/mpich/myrinet/intel/bin/ranlib...not found Checking for program /opt/gridengine/bin/glinux/ranlib...not found Checking for program /usr/kerberos/bin/ranlib...not found Checking for program /usr/java/jdk1.5.0/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /usr/lsf6/bin/ranlib...not found Checking for program /usr/lsf6/etc/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib -c libconf1.a Executing: /usr/bin/ranlib -c libconf1.a sh: Possible ERROR while running ranlib: ret = 2304 error message = {/usr/bin/ranlib: -c: No such file or directory } Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Checking for program /opt/mpich/myrinet/intel/bin/ar...not found Checking for program /opt/gridengine/bin/glinux/ar...not found Checking for program /usr/java/jdk1.5.0/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/globus/bin/ar...not found Checking for program /opt/globus/sbin/ar...not found Checking for program /usr/lsf6/bin/ar...not found Checking for program /opt/mpich/myrinet/intel/bin/ar...not found Checking for program /opt/gridengine/bin/glinux/ar...not found Checking for program /usr/kerberos/bin/ar...not found Checking for program /usr/java/jdk1.5.0/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /usr/lsf6/bin/ar...not found Checking for program /usr/lsf6/etc/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /opt/mpich/myrinet/intel/bin/ranlib...not found Checking for program /opt/gridengine/bin/glinux/ranlib...not found Checking for program /usr/java/jdk1.5.0/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/globus/bin/ranlib...not found Checking for program /opt/globus/sbin/ranlib...not found Checking for program /usr/lsf6/bin/ranlib...not found Checking for program /opt/mpich/myrinet/intel/bin/ranlib...not found Checking for program /opt/gridengine/bin/glinux/ranlib...not found Checking for program /usr/kerberos/bin/ranlib...not found Checking for program /usr/java/jdk1.5.0/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /usr/lsf6/bin/ranlib...not found Checking for program /usr/lsf6/etc/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib libconf1.a Executing: /usr/bin/ranlib libconf1.a sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -L. -lconf1 Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -L. -lconf1 sh: Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:955) TESTING: checkSharedLinker from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:955) Check that the linker can produce shared libraries Checking shared linker /opt/mpich/myrinet/intel/bin/mpicc using flags ['-shared'] Checking for program /opt/mpich/myrinet/intel/bin/mpicc...found Defined make macro "LD_SHARED" to "/opt/mpich/myrinet/intel/bin/mpicc" sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -shared -fPIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -shared -fPIC conftest.o sh: Valid C linker flag -shared sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC conftest.o sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -L. -lconftest Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -L. -lconftest sh: Using shared linker /opt/mpich/myrinet/intel/bin/mpicc with flags ['-shared'] and library extension so sh: uname -s Executing: uname -s sh: Linux ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1026) TESTING: checkSharedLinkerPaths from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1026) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -flags Executing: /opt/mpich/myrinet/intel/bin/mpicc -flags sh: Trying C linker flag -Wl,-rpath, sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 -fPIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 -fPIC conftest.o sh: Valid C linker flag -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 Popping language C Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicc -flags Executing: /opt/mpich/myrinet/intel/bin/mpicc -flags sh: Trying Cxx linker flag -Wl,-rpath, sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -fPIC conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 conftest.o sh: Valid Cxx linker flag -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 Popping language Cxx Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpicc -flags Executing: /opt/mpich/myrinet/intel/bin/mpicc -flags sh: Trying FC linker flag -Wl,-rpath, sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 -I. -fPIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 -I. -fPIC conftest.o sh: Valid FC linker flag -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1056) TESTING: checkLibC from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1056) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC conftest.o sh: Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1100) TESTING: checkDynamicLinker from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1100) Check that the linker can produce dynamic libraries Checking for header: dlfcn.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/dlfcn.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/include... ... #line 10 "/opt/intel/compiler70/ia32/include/stddef.h" typedef _Ptrdifft ptrdiff_t; typedef _Sizet size_t; typedef _Wchart wchar_t; #line 26 "/usr/include/dlfcn.h" #line 1 "/usr/include/bits/dlfcn.h" #line 29 "/usr/include/dlfcn.h" #line 43 "/usr/include/dlfcn.h" extern void *dlopen (__const char *__file, int __mode) ; extern int dlclose (void *__handle) ; extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) ; #line 67 "/usr/include/dlfcn.h" extern char *dlerror (void) ; #line 155 "/usr/include/dlfcn.h" #line 4 "conftest.c" Defined "HAVE_DLFCN_H" to "1" Checking for functions ['dlopen', 'dlsym', 'dlclose'] in library ['dl'] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -ldl sh: Popping language C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -ldl sh: Popping language C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -ldl sh: Popping language C Adding ['dl'] to LIBS sh: uname -s Executing: uname -s sh: Linux Checking dynamic linker /opt/mpich/myrinet/intel/bin/mpicc using flags ['-shared'] Checking for program /opt/mpich/myrinet/intel/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/opt/mpich/myrinet/intel/bin/mpicc" sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -shared -fPIC conftest.o -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -shared -fPIC conftest.o -ldl sh: Valid C linker flag -shared sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC conftest.o -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC conftest.o -ldl sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(11): warning #266: function declared implicitly printf("%s\n", dlerror()); ^ conftest.c(15): warning #266: function declared implicitly printf("Invalid return from foo()\n"); ^ conftest.c(19): warning #266: function declared implicitly printf("Could not close library\n"); ^ } Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("./libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("%s\n", dlerror()); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -ldl sh: Using dynamic linker /opt/mpich/myrinet/intel/bin/mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1146) TESTING: output from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1146) Output module data as defines and substitutions Substituting "CC" with "/opt/mpich/myrinet/intel/bin/mpicc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/opt/mpich/myrinet/intel/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/opt/mpich/myrinet/intel/bin/mpicxx" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "/opt/mpich/myrinet/intel/bin/mpicxx -E" Substituting "FC" with "/opt/mpich/myrinet/intel/bin/mpif90" Substituting "FFLAGS" with " -I. -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilerFlags.py:66) TESTING: configureCompilerFlags from config.compilerFlags(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilerFlags.py:66) Get the default compiler flags Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc --version Executing: /opt/mpich/myrinet/intel/bin/mpicc --version sh: Could not determine compiler version: Could not execute '/opt/mpich/myrinet/intel/bin/mpicc --version': icc: Command line warning: ignoring unknown option '-fversion' /usr/lib/crt1.o(.text+0x18): In function `_start': : undefined reference to `main' getCompilerVersion: /opt/mpich/myrinet/intel/bin/mpicc Unknown sh: /opt/mpich/myrinet/intel/bin/mpicc -show Executing: /opt/mpich/myrinet/intel/bin/mpicc -show sh: icc -DUSE_STDARG -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDARG_H=1 -DUSE_STDARG=1 -DMALLOC_RET_VOID=1 -L/opt/mpich/myrinet/intel/lib -lmpich -L/opt/gm/lib -lgm -lpthread sh: icc --help Executing: icc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. sh: icc --help Executing: icc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. Trying C compiler flag -wd1572 sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -wd1572 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -wd1572 conftest.c sh: Possible ERROR while running compiler: ret = 1024 error message = {Command-line error: invalid error number: 1572 compilation aborted for conftest.c (code 4) } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -wd1572 due to nonzero status from link Rejecting compiler flag -wd1572 due to Command-line error: invalid error number: 1572 compilation aborted for conftest.c (code 4) PETSc Error: No output file produced Rejected C compiler flag -wd1572 sh: /opt/mpich/myrinet/intel/bin/mpicc -show Executing: /opt/mpich/myrinet/intel/bin/mpicc -show sh: icc -DUSE_STDARG -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDARG_H=1 -DUSE_STDARG=1 -DMALLOC_RET_VOID=1 -L/opt/mpich/myrinet/intel/lib -lmpich -L/opt/gm/lib -lgm -lpthread sh: icc --help Executing: icc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. sh: icc --help Executing: icc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. Trying C compiler flag -O3 sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Added C compiler flag -O3 Popping language C Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx --version Executing: /opt/mpich/myrinet/intel/bin/mpicxx --version sh: Could not determine compiler version: Could not execute '/opt/mpich/myrinet/intel/bin/mpicxx --version': icc: Command line warning: ignoring unknown option '-fversion' /usr/lib/crt1.o(.text+0x18): In function `_start': : undefined reference to `main' getCompilerVersion: /opt/mpich/myrinet/intel/bin/mpicxx Unknown sh: /opt/mpich/myrinet/intel/bin/mpicxx -show Executing: /opt/mpich/myrinet/intel/bin/mpicxx -show sh: icc -DUSE_STDARG -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDARG_H=1 -DUSE_STDARG=1 -DMALLOC_RET_VOID=1 -L/opt/mpich/myrinet/intel/lib -lpmpich++ -lmpich -L/opt/gm/lib -lgm -lpthread sh: icc --help Executing: icc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. sh: icc --help Executing: icc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. Trying Cxx compiler flag -wd1572 sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -wd1572 -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -wd1572 -fPIC conftest.cc sh: Possible ERROR while running compiler: ret = 1024 error message = {Command-line error: invalid error number: 1572 compilation aborted for conftest.cc (code 4) } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -wd1572 due to nonzero status from link Rejecting compiler flag -wd1572 due to Command-line error: invalid error number: 1572 compilation aborted for conftest.cc (code 4) PETSc Error: No output file produced Rejected Cxx compiler flag -wd1572 sh: /opt/mpich/myrinet/intel/bin/mpicxx -show Executing: /opt/mpich/myrinet/intel/bin/mpicxx -show sh: icc -DUSE_STDARG -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDARG_H=1 -DUSE_STDARG=1 -DMALLOC_RET_VOID=1 -L/opt/mpich/myrinet/intel/lib -lpmpich++ -lmpich -L/opt/gm/lib -lgm -lpthread sh: icc --help Executing: icc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. sh: icc --help Executing: icc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. Trying Cxx compiler flag -O3 sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc sh: Added Cxx compiler flag -O3 Popping language Cxx Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -V Executing: /opt/mpich/myrinet/intel/bin/mpif90 -V sh: GNU ld version 2.14.90.0.4 20030523 Supported emulations: elf_i386 i386linux Could not determine compiler version: Could not execute '/opt/mpich/myrinet/intel/bin/mpif90 -V': GNU ld version 2.14.90.0.4 20030523 Supported emulations: elf_i386 i386linux Intel(R) Fortran Compiler for 32-bit applications, Version 7.1 Build 20030922Z Copyright (C) 1985-2003 Intel Corporation. All rights reserved. /usr/lib/crt1.o(.text+0x18): In function `_start': : undefined reference to `main' getCompilerVersion: /opt/mpich/myrinet/intel/bin/mpif90 Unknown sh: /opt/mpich/myrinet/intel/bin/mpif90 -show Executing: /opt/mpich/myrinet/intel/bin/mpif90 -show sh: ln -s /opt/mpich/myrinet/intel/include/mpif.h mpif.h ifc -L/opt/mpich/myrinet/intel/lib -lmpichf90 -lmpich -L/opt/gm/lib -lgm -lpthread -lPEPCF90 rm -f mpif.h sh: ln --help Executing: ln --help sh: Usage: ln [OPTION]... TARGET [LINK_NAME] or: ln [OPTION]... TARGET... DIRECTORY or: ln [OPTION]... --target-directory=DIRECTORY TARGET... Create a link to the specified TARGET with optional LINK_NAME. If LINK_NAME is omitted, a link with the same basename as the TARGET is created in the current directory. When using the second form with more than one TARGET, the last argument must be a directory; create links in DIRECTORY to each TARGET. Create hard links by default, symbolic links with --symbolic. When creating hard links, each TARGET must exist. Mandatory arguments to long options ... ... ach file before linking --help display this help and exit --version output version information and exit The backup suffix is `~', unless set with --suffix or SIMPLE_BACKUP_SUFFIX. The version control method may be selected via the --backup option or through the VERSION_CONTROL environment variable. Here are the values: none, off never make backups (even if --backup is given) numbered, t make numbered backups existing, nil numbered if numbered backups exist, simple otherwise simple, never always make simple backups Report bugs to . sh: ln --help Executing: ln --help sh: Usage: ln [OPTION]... TARGET [LINK_NAME] or: ln [OPTION]... TARGET... DIRECTORY or: ln [OPTION]... --target-directory=DIRECTORY TARGET... Create a link to the specified TARGET with optional LINK_NAME. If LINK_NAME is omitted, a link with the same basename as the TARGET is created in the current directory. When using the second form with more than one TARGET, the last argument must be a directory; create links in DIRECTORY to each TARGET. Create hard links by default, symbolic links with --symbolic. When creating hard links, each TARGET must exist. Mandatory arguments to long options ... ... ach file before linking --help display this help and exit --version output version information and exit The backup suffix is `~', unless set with --suffix or SIMPLE_BACKUP_SUFFIX. The version control method may be selected via the --backup option or through the VERSION_CONTROL environment variable. Here are the values: none, off never make backups (even if --backup is given) numbered, t make numbered backups existing, nil numbered if numbered backups exist, simple otherwise simple, never always make simple backups Report bugs to . sh: /opt/mpich/myrinet/intel/bin/mpif90 -show Executing: /opt/mpich/myrinet/intel/bin/mpif90 -show sh: ln -s /opt/mpich/myrinet/intel/include/mpif.h mpif.h ifc -L/opt/mpich/myrinet/intel/lib -lmpichf90 -lmpich -L/opt/gm/lib -lgm -lpthread -lPEPCF90 rm -f mpif.h sh: ln --help Executing: ln --help sh: Usage: ln [OPTION]... TARGET [LINK_NAME] or: ln [OPTION]... TARGET... DIRECTORY or: ln [OPTION]... --target-directory=DIRECTORY TARGET... Create a link to the specified TARGET with optional LINK_NAME. If LINK_NAME is omitted, a link with the same basename as the TARGET is created in the current directory. When using the second form with more than one TARGET, the last argument must be a directory; create links in DIRECTORY to each TARGET. Create hard links by default, symbolic links with --symbolic. When creating hard links, each TARGET must exist. Mandatory arguments to long options ... ... ach file before linking --help display this help and exit --version output version information and exit The backup suffix is `~', unless set with --suffix or SIMPLE_BACKUP_SUFFIX. The version control method may be selected via the --backup option or through the VERSION_CONTROL environment variable. Here are the values: none, off never make backups (even if --backup is given) numbered, t make numbered backups existing, nil numbered if numbered backups exist, simple otherwise simple, never always make simple backups Report bugs to . sh: ln --help Executing: ln --help sh: Usage: ln [OPTION]... TARGET [LINK_NAME] or: ln [OPTION]... TARGET... DIRECTORY or: ln [OPTION]... --target-directory=DIRECTORY TARGET... Create a link to the specified TARGET with optional LINK_NAME. If LINK_NAME is omitted, a link with the same basename as the TARGET is created in the current directory. When using the second form with more than one TARGET, the last argument must be a directory; create links in DIRECTORY to each TARGET. Create hard links by default, symbolic links with --symbolic. When creating hard links, each TARGET must exist. Mandatory arguments to long options ... ... ach file before linking --help display this help and exit --version output version information and exit The backup suffix is `~', unless set with --suffix or SIMPLE_BACKUP_SUFFIX. The version control method may be selected via the --backup option or through the VERSION_CONTROL environment variable. Here are the values: none, off never make backups (even if --backup is given) numbered, t make numbered backups existing, nil numbered if numbered backups exist, simple otherwise simple, never always make simple backups Report bugs to . Trying FC compiler flag -O sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Added FC compiler flag -O Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================= WARNING! Compiling PETSc with no debugging, this should only be done for timing and production runs. All development should be done when configured using --with-debugging=1 ================================================================================= ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/arch.py:39) TESTING: configureArchitecture from PETSc.utilities.arch(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/arch.py:39) Checks PETSC_ARCH and sets if not set Defined "ARCH" to "linux" Defined "ARCH_NAME" to ""linux-hypre"" Substituting "ARCH" with "linux-hypre" ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/sharedLibraries.py:41) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/sharedLibraries.py:41) sh: uname -s Executing: uname -s sh: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "BUILDSHAREDLIB" to "yes" ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/sharedLibraries.py:53) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/sharedLibraries.py:53) Checks whether dynamic libraries should be used, for which you must - Specify --with-dynamic - Have found a working dynamic linker (with dlfcn.h and libdl) Defines PETSC_USE_DYNAMIC_LIBRARIES if they are used Dynamic libraries - disabled ================================================================================ TEST configureBmakeDir from PETSc.utilities.bmakeDir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/bmakeDir.py:26) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/bmakeDir.py:26) Makes bmake/$PETSC_ARCH if it does not exist Changed persistence directory to bmake/linux-hypre sh: /opt/mpich/myrinet/intel/bin/mpicc --help Executing: /opt/mpich/myrinet/intel/bin/mpicc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. ================================================================================ TEST checkRestrict from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:126) TESTING: checkRestrict from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:126) Check for the C/CXX restrict keyword Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: ret = 512 error message = {conftest.c(5): error: expected a ";" float * restrict x;; ^ compilation aborted for conftest.c (code 2) } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:244) TESTING: checkCFormatting from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:244) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:97) TESTING: checkCStaticInline from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:97) Check for C keyword: static inline Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:254) TESTING: checkDynamicLoadFlag from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:254) Checks that dlopen() takes RTLD_GLOBAL, and defines PETSC_HAVE_RTLD_GLOBAL if it does sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -ldl sh: Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:153) TESTING: checkCLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:153) Determines the libraries needed to link with C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -v -fPIC -O3 conftest.o -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -v -fPIC -O3 conftest.o -ldl sh: mpicc for 1.2.6 (release) of : 2004/08/04 11:10:38 Possible ERROR while running linker: ld \ /usr/lib/crt1.o \ /usr/lib/crti.o \ /opt/intel/compiler70/ia32/lib/crtxi.o \ -dynamic-linker \ /lib/ld-linux.so.2 \ -u \ ___get_intrinsics \ -o \ conftest \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/mpich/myrinet/intel/lib \ conftest.o \ -ldl \ -lmpich \ -L \ /opt/gm/lib \ -lgm \ -lpthread \ -Qy \ -L/opt/intel/compiler70/ia32/lib \ -L/usr/lib \ -Bstatic \ -limf \ -Bdynamic \ -lm \ -Bstatic \ -lirc \ -Bstatic \ -lcprts \ -Bdynamic \ -lcxa \ -Bstatic \ -lunwind \ -Bdynamic \ -lc \ /opt/intel/compiler70/ia32/lib/crtxn.o \ /usr/lib/crtn.o output: mpicc for 1.2.6 (release) of : 2004/08/04 11:10:38 error message = {ld \ /usr/lib/crt1.o \ /usr/lib/crti.o \ /opt/intel/compiler70/ia32/lib/crtxi.o \ -dynamic-linker \ /lib/ld-linux.so.2 \ -u \ ___get_intrinsics \ -o \ conftest \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/mpich/myrinet/intel/lib \ conftest.o \ -ldl \ -lmpich \ -L \ /opt/gm/lib \ -lgm \ -lpthread \ -Qy \ -L/opt/intel/compiler70/ia32/lib \ -L/usr/lib \ -Bstatic \ -limf \ -Bdynamic \ -lm \ -Bstatic \ -lirc \ -Bstatic \ -lcprts \ -Bdynamic \ -lcxa \ -Bstatic \ -lunwind \ -Bdynamic \ -lc \ /opt/intel/compiler70/ia32/lib/crtxn.o \ /usr/lib/crtn.o } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -v -fPIC -O3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Checking arg mpicc compilers: Unknown arg mpicc compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.2.6 compilers: Unknown arg 1.2.6 compilers: Checking arg (release) compilers: Unknown arg (release) compilers: Checking arg of compilers: Unknown arg of compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg 2004/08/04 compilers: Unknown arg 2004/08/04 compilers: Checking arg 11:10:38 compilers: Unknown arg 11:10:38 compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /usr/lib/crt1.o compilers: Unknown arg /usr/lib/crt1.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /usr/lib/crti.o compilers: Unknown arg /usr/lib/crti.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /opt/intel/compiler70/ia32/lib/crtxi.o compilers: Unknown arg /opt/intel/compiler70/ia32/lib/crtxi.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /lib/ld-linux.so.2 compilers: Unknown arg /lib/ld-linux.so.2 compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -u compilers: Unknown arg -u compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg ___get_intrinsics compilers: Unknown arg ___get_intrinsics compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -rpath compilers: Found -rpath library: \ compilers: Checking arg /opt/intel/compiler70/ia32/lib compilers: Unknown arg /opt/intel/compiler70/ia32/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L compilers: Found -L \ compilers: Checking arg /opt/mpich/myrinet/intel/lib compilers: Unknown arg /opt/mpich/myrinet/intel/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -ldl compilers: Found library or library directory: -ldl compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lmpich compilers: Found library or library directory: -lmpich compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L compilers: Found -L \ compilers: Checking arg /opt/gm/lib compilers: Unknown arg /opt/gm/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lgm compilers: Found library or library directory: -lgm compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lpthread compilers: Found library or library directory: -lpthread compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Qy compilers: Unknown arg -Qy compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L/opt/intel/compiler70/ia32/lib compilers: Found library or library directory: -L/opt/intel/compiler70/ia32/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L/usr/lib compilers: Found library or library directory: -L/usr/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -limf compilers: Found library or library directory: -limf compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lm compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lirc compilers: Found library or library directory: -lirc compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lcprts compilers: Found library or library directory: -lcprts compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lcxa compilers: Found library or library directory: -lcxa compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lunwind compilers: Found library or library directory: -lunwind compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lc compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /opt/intel/compiler70/ia32/lib/crtxn.o compilers: Unknown arg /opt/intel/compiler70/ia32/lib/crtxn.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /usr/lib/crtn.o compilers: Unknown arg /usr/lib/crtn.o compilers: Libraries needed to link C code with another linker: ['-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-ldl', '-lmpich', '-Wl,-rpath,\\', '-L\\', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind'] compilers: Check that C libraries can be used from Fortran Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language FC sh: /opt/mpich/myrinet/intel/bin/mpicxx --help Executing: /opt/mpich/myrinet/intel/bin/mpicxx --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. ================================================================================ TEST checkRestrict from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:126) TESTING: checkRestrict from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:126) Check for the C/CXX restrict keyword Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc sh: Possible ERROR while running compiler: ret = 512 error message = {conftest.cc(5): error: expected a ";" float * restrict x;; ^ compilation aborted for conftest.cc (code 2) } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc sh: compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:286) TESTING: checkCxxNamespace from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:286) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc sh: sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc sh: Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:261) TESTING: checkCxxOptionalExtensions from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:261) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.c sh: Possible ERROR while running compiler: ret = 512 error message = {conftest.c(5): error: identifier "class" is undefined class somename { int i; };; ^ conftest.c(5): error: expected a ";" class somename { int i; };; ^ compilation aborted for conftest.c (code 2) } Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to conftest.c(5): error: identifier "class" is undefined class somename { int i; };; ^ conftest.c(5): error: expected a ";" class somename { int i; };; ^ compilation aborted for conftest.c (code 2) PETSc Error: No output file produced sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -+ -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -+ -fPIC conftest.c sh: Possible ERROR while running compiler: ret = 512 error message = {icc: Command line warning: ignoring unknown option '-+' conftest.c(5): error: identifier "class" is undefined class somename { int i; };; ^ conftest.c(5): error: expected a ";" class somename { int i; };; ^ compilation aborted for conftest.c (code 2) } Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -+ due to nonzero status from link Rejecting compiler flag -+ due to icc: Command line warning: ignoring unknown option '-+' conftest.c(5): error: identifier "class" is undefined class somename { int i; };; ^ conftest.c(5): error: expected a ";" class somename { int i; };; ^ compilation aborted for conftest.c (code 2) PETSc Error: No output file produced sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -x cxx -tlocal -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -x cxx -tlocal -fPIC conftest.c sh: Possible ERROR while running compiler: ret = 512 error message = {icc: Command line warning: ignoring option '-x'; argument required icc: Command line warning: ignoring unknown option '-tlocal' conftest.c(5): error: identifier "class" is undefined class somename { int i; };; ^ conftest.c(5): error: expected a ";" class somename { int i; };; ^ compilation aborted for conftest.c (code 2) } Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -x cxx -tlocal due to nonzero status from link Rejecting compiler flag -x cxx -tlocal due to icc: Command line warning: ignoring option '-x'; argument required icc: Command line warning: ignoring unknown option '-tlocal' conftest.c(5): error: identifier "class" is undefined class somename { int i; };; ^ conftest.c(5): error: expected a ";" class somename { int i; };; ^ compilation aborted for conftest.c (code 2) PETSc Error: No output file produced sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.c sh: Added Cxx compiler flag -Kc++ Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:111) TESTING: checkCxxStaticInline from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:111) Check for C++ keyword: static inline Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:301) TESTING: checkCxxLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:301) Determines the libraries needed to link with C++ Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -v -O3 -Kc++ conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -v -O3 -Kc++ conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: mpiCC for 1.2.6 (release) of : 2004/08/04 11:10:38 Possible ERROR while running linker: ld \ /usr/lib/crt1.o \ /usr/lib/crti.o \ /opt/intel/compiler70/ia32/lib/crtxi.o \ -dynamic-linker \ /lib/ld-linux.so.2 \ -u \ ___get_intrinsics \ -o \ conftest \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/mpich/myrinet/intel/lib \ conftest.o \ -rpath \ -rpath \ -L \ -ldl \ -lmpich \ -rpath \ -L \ -lgm \ -lpthread \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/intel/compiler70/ia32/lib \ -rpath \ /usr/lib \ -L \ /usr/lib \ -limf \ -lirc \ -lcprts \ -lcxa \ -lunwind \ -ldl \ -lpmpich++ \ -lmpich \ -L \ /opt/gm/lib \ -lgm \ -lpthread \ -Qy \ -L/opt/intel/compiler70/ia32/lib \ -L/usr/lib \ -Bstatic \ -limf \ -Bdynamic \ -lm \ -Bstatic \ -lirc \ -Bstatic \ -lcprts \ -Bdynamic \ -lcxa \ -Bstatic \ -lunwind \ -Bdynamic \ -lc \ /opt/intel/compiler70/ia32/lib/crtxn.o \ /usr/lib/crtn.o output: mpiCC for 1.2.6 (release) of : 2004/08/04 11:10:38 error message = {ld \ /usr/lib/crt1.o \ /usr/lib/crti.o \ /opt/intel/compiler70/ia32/lib/crtxi.o \ -dynamic-linker \ /lib/ld-linux.so.2 \ -u \ ___get_intrinsics \ -o \ conftest \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/mpich/myrinet/intel/lib \ conftest.o \ -rpath \ -rpath \ -L \ -ldl \ -lmpich \ -rpath \ -L \ -lgm \ -lpthread \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/intel/compiler70/ia32/lib \ -rpath \ /usr/lib \ -L \ /usr/lib \ -limf \ -lirc \ -lcprts \ -lcxa \ -lunwind \ -ldl \ -lpmpich++ \ -lmpich \ -L \ /opt/gm/lib \ -lgm \ -lpthread \ -Qy \ -L/opt/intel/compiler70/ia32/lib \ -L/usr/lib \ -Bstatic \ -limf \ -Bdynamic \ -lm \ -Bstatic \ -lirc \ -Bstatic \ -lcprts \ -Bdynamic \ -lcxa \ -Bstatic \ -lunwind \ -Bdynamic \ -lc \ /opt/intel/compiler70/ia32/lib/crtxn.o \ /usr/lib/crtn.o } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -v -O3 -Kc++ conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx compilers: Checking arg mpiCC compilers: Unknown arg mpiCC compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.2.6 compilers: Unknown arg 1.2.6 compilers: Checking arg (release) compilers: Unknown arg (release) compilers: Checking arg of compilers: Unknown arg of compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg 2004/08/04 compilers: Unknown arg 2004/08/04 compilers: Checking arg 11:10:38 compilers: Unknown arg 11:10:38 compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /usr/lib/crt1.o compilers: Unknown arg /usr/lib/crt1.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /usr/lib/crti.o compilers: Unknown arg /usr/lib/crti.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /opt/intel/compiler70/ia32/lib/crtxi.o compilers: Unknown arg /opt/intel/compiler70/ia32/lib/crtxi.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /lib/ld-linux.so.2 compilers: Unknown arg /lib/ld-linux.so.2 compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -u compilers: Unknown arg -u compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg ___get_intrinsics compilers: Unknown arg ___get_intrinsics compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -rpath compilers: Found -rpath library: \ compilers: Checking arg /opt/intel/compiler70/ia32/lib compilers: Unknown arg /opt/intel/compiler70/ia32/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L compilers: Found -L \ compilers: Checking arg /opt/mpich/myrinet/intel/lib compilers: Unknown arg /opt/mpich/myrinet/intel/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -rpath compilers: Found -rpath library: \ compilers: Checking arg -rpath compilers: Found -rpath library: \ compilers: Checking arg -L compilers: Found -L \ compilers: Checking arg -ldl compilers: Found library or library directory: -ldl Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lmpich compilers: Found library or library directory: -lmpich Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -rpath compilers: Found -rpath library: \ compilers: Checking arg -L compilers: Found -L \ compilers: Checking arg -lgm compilers: Found library or library directory: -lgm Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lpthread compilers: Found library or library directory: -lpthread Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -rpath compilers: Found -rpath library: \ compilers: Checking arg /opt/intel/compiler70/ia32/lib compilers: Unknown arg /opt/intel/compiler70/ia32/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L compilers: Found -L \ compilers: Checking arg /opt/intel/compiler70/ia32/lib compilers: Unknown arg /opt/intel/compiler70/ia32/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -rpath compilers: Found -rpath library: \ compilers: Checking arg /usr/lib compilers: Unknown arg /usr/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L compilers: Found -L \ compilers: Checking arg /usr/lib compilers: Unknown arg /usr/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -limf compilers: Found library or library directory: -limf Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lirc compilers: Found library or library directory: -lirc Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lcprts compilers: Found library or library directory: -lcprts Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lcxa compilers: Found library or library directory: -lcxa Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lunwind compilers: Found library or library directory: -lunwind Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -ldl compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lpmpich++ compilers: Found library or library directory: -lpmpich++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lmpich compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L compilers: Found -L \ compilers: Checking arg /opt/gm/lib compilers: Unknown arg /opt/gm/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lgm compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lpthread compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Qy compilers: Unknown arg -Qy compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L/opt/intel/compiler70/ia32/lib compilers: Found library or library directory: -L/opt/intel/compiler70/ia32/lib Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L/usr/lib compilers: Found library or library directory: -L/usr/lib Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -limf compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lm compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lirc compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lcprts compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lcxa compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lunwind compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lc compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /opt/intel/compiler70/ia32/lib/crtxn.o compilers: Unknown arg /opt/intel/compiler70/ia32/lib/crtxn.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /usr/lib/crtn.o compilers: Unknown arg /usr/lib/crtn.o compilers: Libraries needed to link Cxx code with another linker: ['-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-lpmpich++', '-Wl,-rpath,\\', '-L\\'] compilers: Check that Cxx libraries can be used from C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: unrecognized option '-Wl,-rpath,' ld: use the --help option for usage information output: ret = 256 error message = {ld: unrecognized option '-Wl,-rpath,' ld: use the --help option for usage information } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Cxx libraries cannot directly be used from C compilers: Error message from compiling {Cannot compile/link C with /opt/mpich/myrinet/intel/bin/mpicc.} compilers: Check that Cxx libraries can be used from Fortran Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: unrecognized option '-Wl,-rpath,' ld: use the --help option for usage information output: ret = 256 error message = {ld: unrecognized option '-Wl,-rpath,' ld: use the --help option for usage information } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: program main end Popping language FC compilers: Cxx libraries cannot directly be used from Fortran compilers: Error message from compiling {Cannot compile/link FC with /opt/mpich/myrinet/intel/bin/mpicc.} ================================================================================ TEST checkFortranTypeSizes from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:405) TESTING: checkFortranTypeSizes from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:405) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN real*8 variable ^ Warning 2 at (2:conftest.F) : Type size specifiers are an extension to standard Fortran 95 4 Lines Compiled } Source: program main real*8 variable end sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main real*8 variable end compilers: Looks like ifc compiler, adding -w90 -w flags to avoid warnings about real*8 etc Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:464) TESTING: checkFortranNameMangling from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:464) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Popping language C Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 5 Lines Compiled } Source: program main call d1chk() end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o confc.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o confc.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:497) TESTING: checkFortranNameManglingDouble from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:497) Checks if symbols containing and underscore append and extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Popping language C Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 5 Lines Compiled } Source: program main call d1_chk() end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o confc.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o confc.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1c): In function `main': : undefined reference to `d1_chk_' output: ret = 256 error message = {conftest.o(.text+0x1c): In function `main': : undefined reference to `d1_chk_' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o confc.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: program main call d1_chk() end Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:507) TESTING: checkFortranPreprocessor from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:507) Determine if Fortran handles preprocessing properly Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w -DPTesting conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w -DPTesting conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 7 Lines Compiled } Source: program main #define dummy dummy #ifndef PTesting fooey #endif end Added FC compiler flag Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:529) TESTING: checkFortranLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:529) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -V Executing: /opt/mpich/myrinet/intel/bin/mpif90 -V sh: GNU ld version 2.14.90.0.4 20030523 Supported emulations: elf_i386 i386linux sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -v -I. -fPIC -O -w90 -w conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -v -I. -fPIC -O -w90 -w conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: mpif90 for 1.2.6 (release) of : 2004/08/04 11:10:38 Possible ERROR while running linker: ld \ /usr/lib/crt1.o \ /usr/lib/crti.o \ /opt/intel/compiler70/ia32/lib/crtxi.o \ -dynamic-linker \ /lib/ld-linux.so.2 \ -u \ ___get_intrinsics \ -o \ conftest \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/mpich/myrinet/intel/lib \ conftest.o \ -rpath \ -rpath \ -L \ -ldl \ -lmpich \ -rpath \ -L \ -lgm \ -lpthread \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/intel/compiler70/ia32/lib \ -rpath \ /usr/lib \ -L \ /usr/lib \ -limf \ -lirc \ -lcprts \ -lcxa \ -lunwind \ -ldl \ -lmpichf90nc \ -lmpich \ -L \ /opt/gm/lib \ -lgm \ -lpthread \ -lPEPCF90 \ -Qy \ -L/opt/intel/compiler70/ia32/lib \ -L/usr/lib \ -Bstatic \ -lintrins \ -lIEPCF90 \ -lF90 \ -lintrins \ -limf \ -Bdynamic \ -lm \ -Bstatic \ -lirc \ -Bdynamic \ -lcxa \ -Bstatic \ -lunwind \ -Bdynamic \ -lc \ /opt/intel/compiler70/ia32/lib/crtxn.o \ /usr/lib/crtn.o output: mpif90 for 1.2.6 (release) of : 2004/08/04 11:10:38 error message = {ld \ /usr/lib/crt1.o \ /usr/lib/crti.o \ /opt/intel/compiler70/ia32/lib/crtxi.o \ -dynamic-linker \ /lib/ld-linux.so.2 \ -u \ ___get_intrinsics \ -o \ conftest \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/mpich/myrinet/intel/lib \ conftest.o \ -rpath \ -rpath \ -L \ -ldl \ -lmpich \ -rpath \ -L \ -lgm \ -lpthread \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/intel/compiler70/ia32/lib \ -rpath \ /usr/lib \ -L \ /usr/lib \ -limf \ -lirc \ -lcprts \ -lcxa \ -lunwind \ -ldl \ -lmpichf90nc \ -lmpich \ -L \ /opt/gm/lib \ -lgm \ -lpthread \ -lPEPCF90 \ -Qy \ -L/opt/intel/compiler70/ia32/lib \ -L/usr/lib \ -Bstatic \ -lintrins \ -lIEPCF90 \ -lF90 \ -lintrins \ -limf \ -Bdynamic \ -lm \ -Bstatic \ -lirc \ -Bdynamic \ -lcxa \ -Bstatic \ -lunwind \ -Bdynamic \ -lc \ /opt/intel/compiler70/ia32/lib/crtxn.o \ /usr/lib/crtn.o } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -v -I. -fPIC -O -w90 -w conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: program main end Popping language FC compilers: Checking arg mpif90 compilers: Unknown arg mpif90 compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.2.6 compilers: Unknown arg 1.2.6 compilers: Checking arg (release) compilers: Unknown arg (release) compilers: Checking arg of compilers: Unknown arg of compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg 2004/08/04 compilers: Unknown arg 2004/08/04 compilers: Checking arg 11:10:38 compilers: Unknown arg 11:10:38 compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg /usr/lib/crt1.o compilers: Unknown arg /usr/lib/crt1.o compilers: Checking arg /usr/lib/crti.o compilers: Unknown arg /usr/lib/crti.o compilers: Checking arg /opt/intel/compiler70/ia32/lib/crtxi.o compilers: Unknown arg /opt/intel/compiler70/ia32/lib/crtxi.o compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib/ld-linux.so.2 compilers: Unknown arg /lib/ld-linux.so.2 compilers: Checking arg -u compilers: Unknown arg -u compilers: Checking arg ___get_intrinsics compilers: Unknown arg ___get_intrinsics compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg -rpath compilers: Found -rpath library: /opt/intel/compiler70/ia32/lib compilers: Checking arg -L compilers: Found canonical library: -L/opt/mpich/myrinet/intel/lib compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: -rpath compilers: Checking arg -L compilers: Found canonical library: -L-ldl compilers: Checking arg -lmpich compilers: Found library or library directory: -lmpich compilers: Checking arg -rpath compilers: Found -rpath library: -L compilers: Checking arg -lgm compilers: Found library or library directory: -lgm compilers: Checking arg -lpthread compilers: Found library or library directory: -lpthread compilers: Checking arg -rpath compilers: Found -rpath library: /opt/intel/compiler70/ia32/lib compilers: Checking arg -L compilers: Found canonical library: -L/opt/intel/compiler70/ia32/lib compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib compilers: Checking arg -L compilers: Found canonical library: -L/usr/lib compilers: Checking arg -limf compilers: Found library or library directory: -limf compilers: Checking arg -lirc compilers: Found library or library directory: -lirc compilers: Checking arg -lcprts compilers: Found library or library directory: -lcprts compilers: Checking arg -lcxa compilers: Found library or library directory: -lcxa compilers: Checking arg -lunwind compilers: Found library or library directory: -lunwind compilers: Checking arg -ldl compilers: Found library or library directory: -ldl compilers: Checking arg -lmpichf90nc compilers: Found library or library directory: -lmpichf90nc compilers: Checking arg -lmpich compilers: Checking arg -L compilers: Found canonical library: -L/opt/gm/lib compilers: Checking arg -lgm compilers: Checking arg -lpthread compilers: Checking arg -lPEPCF90 compilers: Found library or library directory: -lPEPCF90 compilers: Checking arg -Qy compilers: Unknown arg -Qy compilers: Checking arg -L/opt/intel/compiler70/ia32/lib compilers: Found library or library directory: -L/opt/intel/compiler70/ia32/lib compilers: Checking arg -L/usr/lib compilers: Found library or library directory: -L/usr/lib compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lintrins compilers: Found library or library directory: -lintrins compilers: Checking arg -lIEPCF90 compilers: Found library or library directory: -lIEPCF90 compilers: Checking arg -lF90 compilers: Found library or library directory: -lF90 compilers: Checking arg -lintrins compilers: Checking arg -limf compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lm compilers: Found library or library directory: -lm compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lirc compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lcxa compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lunwind compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lc compilers: Checking arg /opt/intel/compiler70/ia32/lib/crtxn.o compilers: Unknown arg /opt/intel/compiler70/ia32/lib/crtxn.o compilers: Checking arg /usr/lib/crtn.o compilers: Unknown arg /usr/lib/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C compilers: Check for Intel PEPCF90 library Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C compilers: Intel PEPCF90 library exists compilers: Check that Fortran libraries can be used from C++ Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -O3 -Kc++ conftest.o -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -O3 -Kc++ conftest.o -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -O3 -Kc++ conftest.o -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -O3 -Kc++ conftest.o -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language Cxx compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:786) TESTING: checkFortranLinkingCxx from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:786) Check that Fortran can be linked against C++ Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: Popping language Cxx Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: Popping language Cxx Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 5 Lines Compiled } Source: program main call d1chk() end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o cxxobj.o confc.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o cxxobj.o confc.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:821) TESTING: checkFortran90 from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:821) Determine whether the Fortran compiler handles F90 Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 7 Lines Compiled } Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran90Interface from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:868) TESTING: checkFortran90Interface from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:868) Check for custom F90 interfaces, such as that provided by PETSc Defined "HAVE_F90_H" to ""src/sys/f90/f90_intel8.h"" Defined "HAVE_F90_C" to ""src/sys/f90/f90_intel8.c"" ================================================================================ TEST setupFrameworkCompilers from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:932) TESTING: setupFrameworkCompilers from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:932) ================================================================================ TEST configureLibrary from PETSc.packages.Mathematica(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/Mathematica.py:15) TESTING: configureLibrary from PETSc.packages.Mathematica(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/Mathematica.py:15) Find a Mathematica installation and check if it can work with PETSc ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/fortranCPP.py:26) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/fortranCPP.py:26) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:60) TESTING: checkStdC from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:60) sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/string.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... 2, size_t __n) ; extern char *index (__const char *__s, int __c) ; extern char *rindex (__const char *__s, int __c) ; extern int ffs (int __i) __attribute__ ((__const__)); #line 285 "/usr/include/string.h" extern int strcasecmp (__const char *__s1, __const char *__s2) ; extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) ; #line 305 "/usr/include/string.h" extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) ; #line 348 "/usr/include/string.h" #line 378 "/usr/include/string.h" #line 4 "conftest.c" sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/stdlib.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; #line 870 "/usr/include/stdlib.h" #line 901 "/usr/include/stdlib.h" #line 911 "/usr/include/stdlib.h" extern int getloadavg (double __loadavg[], int __nelem) ; #line 4 "conftest.c" sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:93) TESTING: checkStat from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:93) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line... ... extern __inline__ int stat (__const char *__path, struct stat *__statbuf) { return __xstat (3, __path, __statbuf); } extern __inline__ int lstat (__const char *__path, struct stat *__statbuf) { return __lxstat (3, __path, __statbuf); } extern __inline__ int fstat (int __fd, struct stat *__statbuf) { return __fxstat (3, __fd, __statbuf); } extern __inline__ int mknod (__const char *__path, __mode_t __mode, __dev_t __dev) { return __xmknod (1, __path, __mode, &__dev); } #line 392 "/opt/intel/compiler70/ia32/substitute_headers/sys/stat.h" #line 6 "conftest.c" ================================================================================ TEST checkSysWait from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:128) TESTING: checkSysWait from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:128) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:150) TESTING: checkTime from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:150) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/time.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/includ... ... ec *__tp) ; #line 350 "/usr/include/time.h" extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) ; extern int timer_delete (timer_t __timerid) ; extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) ; extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) ; extern int timer_getoverrun (timer_t __timerid) ; #line 397 "/usr/include/time.h" #line 412 "/usr/include/time.h" #line 4 "conftest.c" Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/time.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... ; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) ; extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) ; extern int utimes (__const char *__file, __const struct timeval __tvp[2]) ; extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) ; extern int futimes (int __fd, __const struct timeval __tvp[2]) ; #line 180 "/usr/include/sys/time.h" #line 4 "conftest.c" Defined "HAVE_SYS_TIME_H" to "1" sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "dos.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "dos.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/endian.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/includ... ... s.h" #line 198 "/usr/include/sys/cdefs.h" #line 228 "/usr/include/sys/cdefs.h" #line 259 "/usr/include/sys/cdefs.h" #line 32 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 43 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 58 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 296 "/usr/include/features.h" #line 1 "/usr/include/gnu/stubs.h" #line 319 "/usr/include/features.h" #line 23 "/usr/include/endian.h" #line 1 "/usr/include/bits/endian.h" #line 38 "/usr/include/endian.h" #line 51 "/usr/include/endian.h" #line 4 "conftest.c" Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/fcntl.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/inclu... ... 170 "/usr/include/bits/fcntl.h" #line 180 "/usr/include/bits/fcntl.h" extern ssize_t readahead (int __fd, __off64_t __offset, size_t __count) ; #line 34 "/usr/include/fcntl.h" #line 50 "/usr/include/fcntl.h" extern int fcntl (int __fd, int __cmd, ...); extern int open (__const char *__file, int __oflag, ...); #line 83 "/usr/include/fcntl.h" extern int creat (__const char *__file, __mode_t __mode); #line 102 "/usr/include/fcntl.h" extern int lockf (int __fd, int __cmd, __off_t __len); #line 131 "/usr/include/fcntl.h" #line 172 "/usr/include/fcntl.h" #line 4 "conftest.c" Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/opt/intel/compiler70/ia32/include/float.h" #line 30 "/opt/intel/compiler70/ia32/include/float.h" #line 42 "/opt/intel/compiler70/ia32/include/float.h" #line 54 "/opt/intel/compiler70/ia32/include/float.h" #line 4 "conftest.c" Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "io.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "io.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/opt/intel/compiler70/ia32/include/limits.h" #line 1 "/opt/intel/compiler70/ia32/include/yvals.h" #line 1 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 1 "/opt/intel/compiler70/ia32/include/xarg.h" typedef char * va_list; typedef va_list __gnuc_va_list; #line 114 "/opt/intel/compiler70/ia32/include/xarg.h" #line 30 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 43 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 8 "/opt/intel/compiler70/ia32/inc... ... s/local_lim.h" #line 131 "/usr/include/bits/posix1_lim.h" #line 145 "/usr/include/limits.h" #line 1 "/usr/include/bits/posix2_lim.h" #line 87 "/usr/include/bits/posix2_lim.h" #line 149 "/usr/include/limits.h" #line 24 "/opt/intel/compiler70/ia32/include/limits.h" #line 47 "/opt/intel/compiler70/ia32/include/limits.h" #line 81 "/opt/intel/compiler70/ia32/include/limits.h" #line 96 "/opt/intel/compiler70/ia32/include/limits.h" #line 119 "/opt/intel/compiler70/ia32/include/limits.h" #line 4 "conftest.c" Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/malloc.h" #line 1 "/opt/intel/compiler70/ia32/include/stddef.h" #line 1 "/opt/intel/compiler70/ia32/include/yvals.h" #line 1 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 1 "/opt/intel/compiler70/ia32/include/xarg.h" typedef char * va_list; typedef va_list __gnuc_va_list; #line 114 "/opt/intel/compiler70/ia32/include/xarg.h" #line 30 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 43 "/opt/intel/compiler70/ia32/include/stdarg.h" #line... ... _t malloc_usable_size (void * __ptr); extern void malloc_stats (void); extern void * malloc_get_state (void); extern int malloc_set_state (void * __ptr); extern void (*__malloc_initialize_hook) (void); extern void (*__free_hook) (void * __ptr, const void *); extern void * (*__malloc_hook) (size_t __size, const void *); extern void * (*__realloc_hook) (void * __ptr, size_t __size, const void *); extern void * (*__memalign_hook) (size_t __alignment, size_t __size, const void *); extern void (*__after_morecore_hook) (void); extern void __malloc_check_init (void); #line 4 "conftest.c" Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/pwd.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/include... ... uid_t __uid, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwnam_r (__const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); #line 183 "/usr/include/pwd.h" #line 4 "conftest.c" Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/search.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/includ... ... ompar); extern void *tdelete (__const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value, int __level); extern void twalk (__const void *__root, __action_fn_t __action); #line 161 "/usr/include/search.h" extern void *lfind (__const void *__key, __const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (__const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); #line 4 "conftest.c" Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/strings.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/inc... ... typedef _Wchart wchar_t; #line 30 "/usr/include/strings.h" extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) ; extern void bcopy (__const void *__src, void *__dest, size_t __n) ; extern void bzero (void *__s, size_t __n) ; extern int ffs (int __i) __attribute__ ((const)); extern char *index (__const char *__s, int __c) ; extern char *rindex (__const char *__s, int __c) ; extern int strcasecmp (__const char *__s1, __const char *__s2) ; extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) ; #line 4 "conftest.c" Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/unistd.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... ibute__ ((__const__)); extern int truncate (__const char *__file, __off_t __length) ; #line 890 "/usr/include/unistd.h" extern int ftruncate (int __fd, __off_t __length) ; #line 905 "/usr/include/unistd.h" extern int getdtablesize (void) ; extern int brk (void *__addr) ; extern void *sbrk (intptr_t __delta) ; extern long int syscall (long int __sysno, ...) ; extern int lockf (int __fd, int __cmd, __off_t __len); #line 975 "/usr/include/unistd.h" #line 989 "/usr/include/unistd.h" extern int fdatasync (int __fildes) ; #line 1015 "/usr/include/unistd.h" #line 4 "conftest.c" Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "machine/endian.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "machine/endian.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/param.h" #line 1 "/opt/intel/compiler70/ia32/include/limits.h" #line 1 "/opt/intel/compiler70/ia32/include/yvals.h" #line 1 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 1 "/opt/intel/compiler70/ia32/include/xarg.h" typedef char * va_list; typedef va_list __gnuc_va_list; #line 114 "/opt/intel/compiler70/ia32/include/xarg.h" #line 30 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 43 "/opt/intel/compiler70/ia32/include/stdarg.h" #l... ... long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) ; #line 61 "/usr/include/sys/sysmacros.h" #line 15 "/opt/intel/compiler70/ia32/include/sys/sysmacros.h" #line 25 "/opt/intel/compiler70/ia32/include/sys/sysmacros.h" #line 213 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; #line 249 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" #line 43 "/usr/include/sys/param.h" #line 62 "/usr/include/sys/param.h" #line 4 "conftest.c" Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/procfs.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/... ... gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned short int pr_uid; unsigned short int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; #line 4 "conftest.c" Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/resource.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/... ... nt __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) ; #line 66 "/usr/include/sys/resource.h" extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) ; #line 86 "/usr/include/sys/resource.h" extern int getrusage (__rusage_who_t __who, struct rusage *__usage) ; extern int getpriority (__priority_which_t __which, id_t __who) ; extern int setpriority (__priority_which_t __which, id_t __who, int __prio) ; #line 4 "conftest.c" Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "sys/systeminfo.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "sys/systeminfo.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/times.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/i... ... 147 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t; #line 144 "/opt/intel/compiler70/ia32/substitute_headers/bits/types.h" #line 57 "/usr/include/time.h" typedef __clock_t clock_t; #line 84 "/usr/include/time.h" #line 96 "/usr/include/time.h" #line 108 "/usr/include/time.h" #line 126 "/usr/include/time.h" #line 416 "/usr/include/time.h" #line 30 "/usr/include/sys/times.h" struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) ; #line 4 "conftest.c" Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/utsname.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32... ... #line 58 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 296 "/usr/include/features.h" #line 1 "/usr/include/gnu/stubs.h" #line 319 "/usr/include/features.h" #line 27 "/usr/include/sys/utsname.h" #line 1 "/usr/include/bits/utsname.h" #line 31 "/usr/include/sys/utsname.h" #line 47 "/usr/include/sys/utsname.h" struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; extern int uname (struct utsname *__name) ; #line 4 "conftest.c" Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/string.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... 2, size_t __n) ; extern char *index (__const char *__s, int __c) ; extern char *rindex (__const char *__s, int __c) ; extern int ffs (int __i) __attribute__ ((__const__)); #line 285 "/usr/include/string.h" extern int strcasecmp (__const char *__s1, __const char *__s2) ; extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) ; #line 305 "/usr/include/string.h" extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) ; #line 348 "/usr/include/string.h" #line 378 "/usr/include/string.h" #line 4 "conftest.c" Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/stdlib.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; #line 870 "/usr/include/stdlib.h" #line 901 "/usr/include/stdlib.h" #line 911 "/usr/include/stdlib.h" extern int getloadavg (double __loadavg[], int __nelem) ; #line 4 "conftest.c" Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/socket.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/in... ... extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) ; extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) ; extern int listen (int __fd, int __n) ; extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern int shutdown (int __fd, int __how) ; extern int isfdtype (int __fd, int __fdtype) ; #line 4 "conftest.c" Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/wait.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/in... ... int __options); #line 1 "/usr/include/bits/siginfo.h" #line 1 "/usr/include/bits/wordsize.h" #line 26 "/usr/include/bits/siginfo.h" #line 39 "/usr/include/bits/siginfo.h" #line 259 "/usr/include/bits/siginfo.h" #line 140 "/usr/include/sys/wait.h" extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (void * __stat_loc, int __options, struct rusage * __usage) ; struct rusage; extern __pid_t wait4 (__pid_t __pid, void * __stat_loc, int __options, struct rusage *__usage) ; #line 4 "conftest.c" Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/netinet/in.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/in... ... 32 (unsigned int __bsx) { return ((((__bsx) & 0xff000000) >> 24) | (((__bsx) & 0x00ff0000) >> 8) | (((__bsx) & 0x0000ff00) << 8) | (((__bsx) & 0x000000ff) << 24)); } #line 132 "/usr/include/bits/byteswap.h" #line 274 "/usr/include/netinet/in.h" #line 295 "/usr/include/netinet/in.h" extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) ; extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) ; struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; #line 386 "/usr/include/netinet/in.h" #line 4 "conftest.c" Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/netdb.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/in... ... e/netdb.h" #line 596 "/usr/include/netdb.h" extern int getaddrinfo (__const char *__restrict __name, __const char *__restrict __service, __const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) ; extern __const char *gai_strerror (int __ecode) ; extern int getnameinfo (__const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, unsigned int __flags); #line 661 "/usr/include/netdb.h" #line 4 "conftest.c" Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "Direct.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "Direct.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/time.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/includ... ... ec *__tp) ; #line 350 "/usr/include/time.h" extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) ; extern int timer_delete (timer_t __timerid) ; extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) ; extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) ; extern int timer_getoverrun (timer_t __timerid) ; #line 397 "/usr/include/time.h" #line 412 "/usr/include/time.h" #line 4 "conftest.c" Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "Ws2tcpip.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "Ws2tcpip.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line... ... nt gnu_dev_minor (unsigned long long int __dev) ; extern __inline unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) ; #line 61 "/usr/include/sys/sysmacros.h" #line 15 "/opt/intel/compiler70/ia32/include/sys/sysmacros.h" #line 25 "/opt/intel/compiler70/ia32/include/sys/sysmacros.h" #line 213 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; #line 249 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" #line 4 "conftest.c" Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "WindowsX.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "WindowsX.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "cxxabi.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "cxxabi.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "dos.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "dos.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/endian.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/includ... ... s.h" #line 198 "/usr/include/sys/cdefs.h" #line 228 "/usr/include/sys/cdefs.h" #line 259 "/usr/include/sys/cdefs.h" #line 32 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 43 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 58 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 296 "/usr/include/features.h" #line 1 "/usr/include/gnu/stubs.h" #line 319 "/usr/include/features.h" #line 23 "/usr/include/endian.h" #line 1 "/usr/include/bits/endian.h" #line 38 "/usr/include/endian.h" #line 51 "/usr/include/endian.h" #line 4 "conftest.c" Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/fcntl.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/inclu... ... 170 "/usr/include/bits/fcntl.h" #line 180 "/usr/include/bits/fcntl.h" extern ssize_t readahead (int __fd, __off64_t __offset, size_t __count) ; #line 34 "/usr/include/fcntl.h" #line 50 "/usr/include/fcntl.h" extern int fcntl (int __fd, int __cmd, ...); extern int open (__const char *__file, int __oflag, ...); #line 83 "/usr/include/fcntl.h" extern int creat (__const char *__file, __mode_t __mode); #line 102 "/usr/include/fcntl.h" extern int lockf (int __fd, int __cmd, __off_t __len); #line 131 "/usr/include/fcntl.h" #line 172 "/usr/include/fcntl.h" #line 4 "conftest.c" Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/opt/intel/compiler70/ia32/include/float.h" #line 30 "/opt/intel/compiler70/ia32/include/float.h" #line 42 "/opt/intel/compiler70/ia32/include/float.h" #line 54 "/opt/intel/compiler70/ia32/include/float.h" #line 4 "conftest.c" Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "io.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "io.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/opt/intel/compiler70/ia32/include/limits.h" #line 1 "/opt/intel/compiler70/ia32/include/yvals.h" #line 1 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 1 "/opt/intel/compiler70/ia32/include/xarg.h" typedef char * va_list; typedef va_list __gnuc_va_list; #line 114 "/opt/intel/compiler70/ia32/include/xarg.h" #line 30 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 43 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 8 "/opt/intel/compiler70/ia32/inc... ... s/local_lim.h" #line 131 "/usr/include/bits/posix1_lim.h" #line 145 "/usr/include/limits.h" #line 1 "/usr/include/bits/posix2_lim.h" #line 87 "/usr/include/bits/posix2_lim.h" #line 149 "/usr/include/limits.h" #line 24 "/opt/intel/compiler70/ia32/include/limits.h" #line 47 "/opt/intel/compiler70/ia32/include/limits.h" #line 81 "/opt/intel/compiler70/ia32/include/limits.h" #line 96 "/opt/intel/compiler70/ia32/include/limits.h" #line 119 "/opt/intel/compiler70/ia32/include/limits.h" #line 4 "conftest.c" Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/malloc.h" #line 1 "/opt/intel/compiler70/ia32/include/stddef.h" #line 1 "/opt/intel/compiler70/ia32/include/yvals.h" #line 1 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 1 "/opt/intel/compiler70/ia32/include/xarg.h" typedef char * va_list; typedef va_list __gnuc_va_list; #line 114 "/opt/intel/compiler70/ia32/include/xarg.h" #line 30 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 43 "/opt/intel/compiler70/ia32/include/stdarg.h" #line... ... _t malloc_usable_size (void * __ptr); extern void malloc_stats (void); extern void * malloc_get_state (void); extern int malloc_set_state (void * __ptr); extern void (*__malloc_initialize_hook) (void); extern void (*__free_hook) (void * __ptr, const void *); extern void * (*__malloc_hook) (size_t __size, const void *); extern void * (*__realloc_hook) (void * __ptr, size_t __size, const void *); extern void * (*__memalign_hook) (size_t __alignment, size_t __size, const void *); extern void (*__after_morecore_hook) (void); extern void __malloc_check_init (void); #line 4 "conftest.c" Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/pwd.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/include... ... uid_t __uid, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwnam_r (__const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); #line 183 "/usr/include/pwd.h" #line 4 "conftest.c" Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/search.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/includ... ... ompar); extern void *tdelete (__const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value, int __level); extern void twalk (__const void *__root, __action_fn_t __action); #line 161 "/usr/include/search.h" extern void *lfind (__const void *__key, __const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (__const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); #line 4 "conftest.c" Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/strings.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/inc... ... typedef _Wchart wchar_t; #line 30 "/usr/include/strings.h" extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) ; extern void bcopy (__const void *__src, void *__dest, size_t __n) ; extern void bzero (void *__s, size_t __n) ; extern int ffs (int __i) __attribute__ ((const)); extern char *index (__const char *__s, int __c) ; extern char *rindex (__const char *__s, int __c) ; extern int strcasecmp (__const char *__s1, __const char *__s2) ; extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) ; #line 4 "conftest.c" Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/unistd.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... ibute__ ((__const__)); extern int truncate (__const char *__file, __off_t __length) ; #line 890 "/usr/include/unistd.h" extern int ftruncate (int __fd, __off_t __length) ; #line 905 "/usr/include/unistd.h" extern int getdtablesize (void) ; extern int brk (void *__addr) ; extern void *sbrk (intptr_t __delta) ; extern long int syscall (long int __sysno, ...) ; extern int lockf (int __fd, int __cmd, __off_t __len); #line 975 "/usr/include/unistd.h" #line 989 "/usr/include/unistd.h" extern int fdatasync (int __fildes) ; #line 1015 "/usr/include/unistd.h" #line 4 "conftest.c" Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "machine/endian.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "machine/endian.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/param.h" #line 1 "/opt/intel/compiler70/ia32/include/limits.h" #line 1 "/opt/intel/compiler70/ia32/include/yvals.h" #line 1 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 1 "/opt/intel/compiler70/ia32/include/xarg.h" typedef char * va_list; typedef va_list __gnuc_va_list; #line 114 "/opt/intel/compiler70/ia32/include/xarg.h" #line 30 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 43 "/opt/intel/compiler70/ia32/include/stdarg.h" #l... ... long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) ; #line 61 "/usr/include/sys/sysmacros.h" #line 15 "/opt/intel/compiler70/ia32/include/sys/sysmacros.h" #line 25 "/opt/intel/compiler70/ia32/include/sys/sysmacros.h" #line 213 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; #line 249 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" #line 43 "/usr/include/sys/param.h" #line 62 "/usr/include/sys/param.h" #line 4 "conftest.c" Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/procfs.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/... ... gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned short int pr_uid; unsigned short int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; #line 4 "conftest.c" Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/resource.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/... ... nt __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) ; #line 66 "/usr/include/sys/resource.h" extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) ; #line 86 "/usr/include/sys/resource.h" extern int getrusage (__rusage_who_t __who, struct rusage *__usage) ; extern int getpriority (__priority_which_t __which, id_t __who) ; extern int setpriority (__priority_which_t __which, id_t __who, int __prio) ; #line 4 "conftest.c" Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "sys/systeminfo.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "sys/systeminfo.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/times.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/i... ... 147 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t; #line 144 "/opt/intel/compiler70/ia32/substitute_headers/bits/types.h" #line 57 "/usr/include/time.h" typedef __clock_t clock_t; #line 84 "/usr/include/time.h" #line 96 "/usr/include/time.h" #line 108 "/usr/include/time.h" #line 126 "/usr/include/time.h" #line 416 "/usr/include/time.h" #line 30 "/usr/include/sys/times.h" struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) ; #line 4 "conftest.c" Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/utsname.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32... ... #line 58 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 296 "/usr/include/features.h" #line 1 "/usr/include/gnu/stubs.h" #line 319 "/usr/include/features.h" #line 27 "/usr/include/sys/utsname.h" #line 1 "/usr/include/bits/utsname.h" #line 31 "/usr/include/sys/utsname.h" #line 47 "/usr/include/sys/utsname.h" struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; extern int uname (struct utsname *__name) ; #line 4 "conftest.c" Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/string.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... 2, size_t __n) ; extern char *index (__const char *__s, int __c) ; extern char *rindex (__const char *__s, int __c) ; extern int ffs (int __i) __attribute__ ((__const__)); #line 285 "/usr/include/string.h" extern int strcasecmp (__const char *__s1, __const char *__s2) ; extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) ; #line 305 "/usr/include/string.h" extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) ; #line 348 "/usr/include/string.h" #line 378 "/usr/include/string.h" #line 4 "conftest.c" Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/stdlib.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; #line 870 "/usr/include/stdlib.h" #line 901 "/usr/include/stdlib.h" #line 911 "/usr/include/stdlib.h" extern int getloadavg (double __loadavg[], int __nelem) ; #line 4 "conftest.c" Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/socket.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/in... ... extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) ; extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) ; extern int listen (int __fd, int __n) ; extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern int shutdown (int __fd, int __how) ; extern int isfdtype (int __fd, int __fdtype) ; #line 4 "conftest.c" Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/wait.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/in... ... int __options); #line 1 "/usr/include/bits/siginfo.h" #line 1 "/usr/include/bits/wordsize.h" #line 26 "/usr/include/bits/siginfo.h" #line 39 "/usr/include/bits/siginfo.h" #line 259 "/usr/include/bits/siginfo.h" #line 140 "/usr/include/sys/wait.h" extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (void * __stat_loc, int __options, struct rusage * __usage) ; struct rusage; extern __pid_t wait4 (__pid_t __pid, void * __stat_loc, int __options, struct rusage *__usage) ; #line 4 "conftest.c" Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/netinet/in.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/in... ... 32 (unsigned int __bsx) { return ((((__bsx) & 0xff000000) >> 24) | (((__bsx) & 0x00ff0000) >> 8) | (((__bsx) & 0x0000ff00) << 8) | (((__bsx) & 0x000000ff) << 24)); } #line 132 "/usr/include/bits/byteswap.h" #line 274 "/usr/include/netinet/in.h" #line 295 "/usr/include/netinet/in.h" extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) ; extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) ; struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; #line 386 "/usr/include/netinet/in.h" #line 4 "conftest.c" Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/netdb.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/in... ... e/netdb.h" #line 596 "/usr/include/netdb.h" extern int getaddrinfo (__const char *__restrict __name, __const char *__restrict __service, __const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) ; extern __const char *gai_strerror (int __ecode) ; extern int getnameinfo (__const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, unsigned int __flags); #line 661 "/usr/include/netdb.h" #line 4 "conftest.c" Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "Direct.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "Direct.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/time.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/includ... ... ec *__tp) ; #line 350 "/usr/include/time.h" extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) ; extern int timer_delete (timer_t __timerid) ; extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) ; extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) ; extern int timer_getoverrun (timer_t __timerid) ; #line 397 "/usr/include/time.h" #line 412 "/usr/include/time.h" #line 4 "conftest.c" Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "Ws2tcpip.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "Ws2tcpip.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line... ... nt gnu_dev_minor (unsigned long long int __dev) ; extern __inline unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) ; #line 61 "/usr/include/sys/sysmacros.h" #line 15 "/opt/intel/compiler70/ia32/include/sys/sysmacros.h" #line 25 "/opt/intel/compiler70/ia32/include/sys/sysmacros.h" #line 213 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; #line 249 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" #line 4 "conftest.c" Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "WindowsX.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "WindowsX.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "cxxabi.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "cxxabi.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST checkRecursiveMacros from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:158) TESTING: checkRecursiveMacros from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:158) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: ================================================================================ TEST checkMemcmp from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:79) TESTING: checkMemcmp from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:79) Check for 8-bit clean memcmp sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: ================================================================================ TEST checkSysinfo from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:102) TESTING: checkSysinfo from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:102) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for function sysinfo sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SYSINFO" to "1" Checking for header: linux/kernel.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/linux/kernel.h" struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; #line 4 "conftest.c" Defined "HAVE_LINUX_KERNEL_H" to "1" Checking for header: sys/sysinfo.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/sysinfo.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/i... ... long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; #line 26 "/usr/include/sys/sysinfo.h" extern int sysinfo (struct sysinfo *__info) ; extern int get_nprocs_conf (void) ; extern int get_nprocs (void) ; extern long int get_phys_pages (void) ; extern long int get_avphys_pages (void) ; #line 4 "conftest.c" Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "sys/systeminfo.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "sys/systeminfo.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: ret = 1024 error message = {conftest.c(13): catastrophic error: #error directive: "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ compilation aborted for conftest.c (code 4) } Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } ================================================================================ TEST checkVPrintf from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:125) Checking for function vprintf sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_VPRINTF" to "1" sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: ================================================================================ TEST checkSignalHandlerType from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:132) TESTING: checkSignalHandlerType from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:132) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:142) TESTING: checkFreeReturnType from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:142) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: ret = 512 error message = {conftest.c(6): error: a value of type "void" cannot be assigned to an entity of type "int" int ierr; void *p; ierr = free(p); return 0; ^ compilation aborted for conftest.c (code 2) } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `sbreak' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `sbreak' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `task_info' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `task_info' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_access' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_access' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(20): (col. 1)warning #980: wrong number of actual arguments to intrinsic function "getcwd" } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getcwd) || defined (__stub___getcwd) choke me #else getcwd(); #endif ; return 0; } Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_getcwd' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_getcwd' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : the `getwd' function is dangerous and should not be used. output: error message = {conftest.o(.text+0x1f): In function `main': : the `getwd' function is dangerous and should not be used. } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getwd) || defined (__stub___getwd) choke me #else getwd(); #endif ; return 0; } Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(20): (col. 1)warning #980: wrong number of actual arguments to intrinsic function "memmove" } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `PXFGETARG' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `PXFGETARG' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(20): (col. 1)warning #980: wrong number of actual arguments to intrinsic function "signal" } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char signal(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char signal(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_signal) || defined (__stub___signal) choke me #else signal(); #endif ; return 0; } Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SIGSET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_sleep' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_sleep' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_snprintf' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_snprintf' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_fullpath' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_fullpath' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_lseek' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_lseek' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `stricmp' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `stricmp' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_intel_fast_memcpy' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_intel_fast_memcpy' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_intel_fast_memset' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_intel_fast_memset' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_access' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_access' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(20): (col. 1)warning #980: wrong number of actual arguments to intrinsic function "getcwd" } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getcwd) || defined (__stub___getcwd) choke me #else getcwd(); #endif ; return 0; } Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_getcwd' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_getcwd' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : the `getwd' function is dangerous and should not be used. output: error message = {conftest.o(.text+0x1f): In function `main': : the `getwd' function is dangerous and should not be used. } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getwd) || defined (__stub___getwd) choke me #else getwd(); #endif ; return 0; } Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(20): (col. 1)warning #980: wrong number of actual arguments to intrinsic function "memmove" } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `PXFGETARG' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `PXFGETARG' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(20): (col. 1)warning #980: wrong number of actual arguments to intrinsic function "signal" } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char signal(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char signal(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_signal) || defined (__stub___signal) choke me #else signal(); #endif ; return 0; } Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SIGSET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_sleep' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_sleep' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_snprintf' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_snprintf' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_fullpath' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_fullpath' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_lseek' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_lseek' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `stricmp' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `stricmp' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_intel_fast_memcpy' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_intel_fast_memcpy' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_intel_fast_memset' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_intel_fast_memset' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `sbreak' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `sbreak' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `task_info' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `task_info' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "sigfpe.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "sigfpe.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "fpxcp.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "fpxcp.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "floatingpoint.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "floatingpoint.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/fortranCommandLine.py:26) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/fortranCommandLine.py:26) Check for the mechanism to retrieve command line arguments in Fortran Pushing language C Checking for function _gfortran_iargc sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_gfortran_iargc' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_gfortran_iargc' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _gfortran_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) choke me #else _gfortran_iargc(); #endif ; return 0; } Checking for function ipxfargc_ sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `ipxfargc_' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `ipxfargc_' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char ipxfargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) choke me #else ipxfargc_(); #endif ; return 0; } Checking for function f90_unix_MP_iargc sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `f90_unix_MP_iargc' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `f90_unix_MP_iargc' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char f90_unix_MP_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) choke me #else f90_unix_MP_iargc(); #endif ; return 0; } Checking for function PXFGETARG sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `PXFGETARG' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `PXFGETARG' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } Checking for function iargc_ sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm sh: Defined "HAVE_IARGC_" to "1" Defined "HAVE_BGL_IARGC" to "1" Popping language C ================================================================================ TEST checkSizeTypes from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:44) TESTING: checkSizeTypes from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:44) Checks for types associated with sizes, such as size_t. Checking for type: size_t sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: size_t found ================================================================================ TEST checkFileTypes from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:49) TESTING: checkFileTypes from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:49) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: mode_t found Checking for type: off_t sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: off_t found ================================================================================ TEST checkPID from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:55) TESTING: checkPID from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:55) Checks for pid_t, and defines it if necessary Checking for type: pid_t sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: pid_t found ================================================================================ TEST checkUID from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:59) TESTING: checkUID from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:59) Checks for uid_t and gid_t, and defines them if necessary sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" sys/types.h ================================================================================ TEST checkSignal from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:66) TESTING: checkSignal from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:66) Checks the return type of signal() and defines RETSIGTYPE to that type name sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:87) TESTING: checkC99Complex from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:87) Check for complex numbers in in C99 std sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:96) TESTING: checkCxxComplex from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:96) Check for complex numbers in namespace std Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -O3 -Kc++ conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -O3 -Kc++ conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:117) TESTING: checkFortranKind from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:117) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 7 Lines Compiled } Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:129) TESTING: checkFortranDReal from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:129) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 5 Lines Compiled } Source: program main double precision d d = dreal(3.0) end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language FC ================================================================================ TEST checkConst from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:137) TESTING: checkConst from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:137) Checks for working const, and if not found defines it to empty string sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: ================================================================================ TEST checkEndian from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:193) TESTING: checkEndian from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:193) If the machine is big endian, defines WORDS_BIGENDIAN sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: ret = 512 error message = {conftest.c(11): error: identifier "not" is undefined not big endian ^ conftest.c(11): error: expected a ";" not big endian ^ compilation aborted for conftest.c (code 2) } Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_VOID_P" to "4" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_LONG" to "4" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:288) TESTING: checkBitsPerByte from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:288) Determine the nubmer of bits per byte and define BITS_PER_BYTE sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST configureScalarType from PETSc.utilities.scalarTypes(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/scalarTypes.py:30) TESTING: configureScalarType from PETSc.utilities.scalarTypes(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/scalarTypes.py:30) Choose between real and complex numbers Scalar type is real ================================================================================ TEST configurePrecision from PETSc.utilities.scalarTypes(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/scalarTypes.py:46) TESTING: configurePrecision from PETSc.utilities.scalarTypes(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/scalarTypes.py:46) Set the default real number precision for PETSc objects Precision is double ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lsocket -lnsl -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lsocket -lnsl -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lsocket output: ret = 256 error message = {ld: cannot find -lsocket } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lsocket -lnsl -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lfpe -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lfpe -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lfpe output: ret = 256 error message = {ld: cannot find -lfpe } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lfpe -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lsocket -lnsl -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lsocket -lnsl -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lsocket output: ret = 256 error message = {ld: cannot find -lsocket } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lsocket -lnsl -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lfpe -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lfpe -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lfpe output: ret = 256 error message = {ld: cannot find -lfpe } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lfpe -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST checkMath from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:177) TESTING: checkMath from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:177) Check for sin() in libm, the math library Checking for functions ['sin', 'floor', 'log10', 'pow'] in library [''] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:193) TESTING: checkMathErf from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:193) Check for erf() in libm, the math library Checking for functions ['erf'] in library [] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkDynamic from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:202) TESTING: checkDynamic from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:202) Check for the header and libraries necessary for dynamic library manipulation Checking for functions ['dlopen'] in library ['dl'] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -ldl -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -ldl -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language C Checking for header: dlfcn.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/dlfcn.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/include... ... #line 10 "/opt/intel/compiler70/ia32/include/stddef.h" typedef _Ptrdifft ptrdiff_t; typedef _Sizet size_t; typedef _Wchart wchar_t; #line 26 "/usr/include/dlfcn.h" #line 1 "/usr/include/bits/dlfcn.h" #line 29 "/usr/include/dlfcn.h" #line 43 "/usr/include/dlfcn.h" extern void *dlopen (__const char *__file, int __mode) ; extern int dlclose (void *__handle) ; extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) ; #line 67 "/usr/include/dlfcn.h" extern char *dlerror (void) ; #line 155 "/usr/include/dlfcn.h" #line 4 "conftest.c" Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST alternateConfigureLibrary from config.packages.Boost(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/package.py:355) TESTING: alternateConfigureLibrary from config.packages.Boost(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/package.py:355) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureLibrary from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:384) TESTING: configureLibrary from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:384) ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root (HPUX) ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libveclib.a'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lveclib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lveclib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lveclib output: ret = 256 error message = {ld: cannot find -lveclib } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lveclib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root (F2C) ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libf2cblas.a'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf2cblas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf2cblas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lf2cblas output: ret = 256 error message = {ld: cannot find -lf2cblas } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf2cblas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libfblas.a'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lfblas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lfblas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lfblas output: ret = 256 error message = {ld: cannot find -lfblas } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lfblas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified ATLAS Linux installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libcblas.a', '/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBCBLAS" to "1" Defined "HAVE_LIBF77BLAS" to "1" Defined "HAVE_LIBATLAS" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/lsftmp/g0306332/inter/mkl/liblapack.a'] ['/lsftmp/g0306332/inter/mkl/libcblas.a', '/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a', ' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: /usr/lib/libf77blas.a(xerbla.o)(.text+0x9): In function `xerbla_': : undefined reference to `s_wsfe' /usr/lib/libf77blas.a(xerbla.o)(.text+0x1c): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/libf77blas.a(xerbla.o)(.text+0x2f): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/libf77blas.a(xerbla.o)(.text+0x34): In function `xerbla_': : undefined reference to `e_wsfe' output: ret = 256 error message = {/usr/lib/libf77blas.a(xerbla.o)(.text+0x9): In function `xerbla_': : undefined reference to `s_wsfe' /usr/lib/libf77blas.a(xerbla.o)(.text+0x1c): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/libf77blas.a(xerbla.o)(.text+0x2f): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/libf77blas.a(xerbla.o)(.text+0x34): In function `xerbla_': : undefined reference to `e_wsfe' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Popping language C Checking for functions ['dgeev'] in library ['/lsftmp/g0306332/inter/mkl/liblapack.a'] ['/lsftmp/g0306332/inter/mkl/libcblas.a', '/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a', ' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `dgeev_' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `dgeev_' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified ATLAS Linux installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBF77BLAS" to "1" Defined "HAVE_LIBATLAS" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/lsftmp/g0306332/inter/mkl/liblapack.a'] ['/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a', ' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0xa7): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0xd7): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0x112): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0x142): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0x1b9): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0x229): more undefined references to `cblas_dtrsm' follow /usr/lib/libf77blas.a(xerbla.o)(.text+0x9): In function `xerbla_': : undefined reference to `s_wsfe' /usr/lib/libf77blas.a(xerbla.o)(.text+0x1c): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/libf77blas.a(xerbla.o)(.text+0x2f): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/libf77blas.a(xerbla.o)(.text+0x34): In function `xerbla_': : undefined reference to `e_wsfe' output: ret = 256 error message = {/usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0xa7): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0xd7): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0x112): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0x142): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0x1b9): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0x229): more undefined references to `cblas_dtrsm' follow /usr/lib/libf77blas.a(xerbla.o)(.text+0x9): In function `xerbla_': : undefined reference to `s_wsfe' /usr/lib/libf77blas.a(xerbla.o)(.text+0x1c): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/libf77blas.a(xerbla.o)(.text+0x2f): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/libf77blas.a(xerbla.o)(.text+0x34): In function `xerbla_': : undefined reference to `e_wsfe' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Popping language C Checking for functions ['dgeev'] in library ['/lsftmp/g0306332/inter/mkl/liblapack.a'] ['/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a', ' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `dgeev_' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `dgeev_' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified AMD ACML lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/libacml.a'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib -L/lsftmp/g0306332/inter/mkl/lib -lacml -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib -L/lsftmp/g0306332/inter/mkl/lib -lacml -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lacml output: ret = 256 error message = {ld: cannot find -lacml } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib -L/lsftmp/g0306332/inter/mkl/lib -lacml -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-x86 lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_def -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_def -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lmkl_lapack output: ret = 256 error message = {ld: cannot find -lmkl_lapack } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_def -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-ia64 lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libmkl_lapack.a', 'libmkl_ipf.a', 'guide', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ipf -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ipf -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lmkl_lapack output: ret = 256 error message = {ld: cannot find -lmkl_lapack } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ipf -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-em64t lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libmkl_lapack.a', 'libmkl_em64t.a', 'guide', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_em64t -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_em64t -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lmkl_lapack output: ret = 256 error message = {ld: cannot find -lmkl_lapack } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_em64t -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Mac-x86 lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libmkl_lapack.a', 'libmkl_ia32.a', 'guide'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ia32 -lguide -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ia32 -lguide -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lmkl_lapack output: ret = 256 error message = {ld: cannot find -lmkl_lapack } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ia32 -lguide -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-x86 installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `vslDeleteStream' /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `viRngUniformBits' /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `vslNewStream' output: ret = 256 error message = {/lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `vslDeleteStream' /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `viRngUniformBits' /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `vslNewStream' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-x86 installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C ================================================================================ TEST checkESSL from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:434) TESTING: checkESSL from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:434) Check for the IBM ESSL library Checking for functions ['iessl'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `iessl' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `iessl' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); int main() { iessl() ; return 0; } Popping language C ================================================================================ TEST checkPESSL from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:440) TESTING: checkPESSL from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:440) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions ['pdgemm'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `pdgemm' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `pdgemm' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pdgemm(); int main() { pdgemm() ; return 0; } Popping language C ================================================================================ TEST checkMissing from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:446) TESTING: checkMissing from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:446) Check for missing LAPACK routines Checking for functions ['dgesvd'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dgeev'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dgetrf'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dpotrf'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dpotrs'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C ================================================================================ TEST configureTimers from PETSc.utilities.timer(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_GETCLOCK PETSC_USE_DCLOCK PETSC_USE_NT_TIME. Checking for functions ['MPI_CRAY_barrier'] in library [''] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `MPI_CRAY_barrier' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `MPI_CRAY_barrier' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); int main() { MPI_CRAY_barrier() ; return 0; } Popping language C Cray-MPI test failure Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:497) TESTING: configureLibrary from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:497) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in User specified root directory MPI: [] ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['MPI_Init', 'MPI_Comm_create'] in library [] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language C Checking for headers User specified root directory MPI: ['/opt/mpich/myrinet/intel/include'] ================================================================================ TEST checkInclude from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:47) TESTING: checkInclude from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:47) Checks if a particular include file can be found along particular include paths sh: /opt/mpich/myrinet/intel/bin/mpicc -E -I/opt/mpich/myrinet/intel/include conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E -I/opt/mpich/myrinet/intel/include conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/opt/mpich/myrinet/intel/include/mpi.h" typedef int MPI_Datatype; #line 64 "/opt/mpich/myrinet/intel/include/mpi.h" #line 86 "/opt/mpich/myrinet/intel/include/mpi.h" #line 100 "/opt/mpich/myrinet/intel/include/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Op; #line 125 "/opt/mpich/myrinet/intel/include/mpi.h" #line 145 "/opt/mpich/myrinet/intel/include/mpi.h" typedef int MPI_Errhandler; typedef union MPIR_HAND... ... ; int PMPI_Init(int *, char ***); int PMPI_Init_thread( int *, char ***, int, int * ); int PMPI_Finalize(void); int PMPI_Initialized(int *); int PMPI_Abort(MPI_Comm, int); int PMPI_Comm_set_name(MPI_Comm, char *); int PMPI_Comm_get_name(MPI_Comm, char *, int *); #line 668 "/opt/mpich/myrinet/intel/include/mpi.h" int PMPI_Pcontrol(const int, ...); int PMPI_Status_set_cancelled( MPI_Status *, int ); int PMPI_Status_set_elements( MPI_Status *, MPI_Datatype, int ); #line 691 "/opt/mpich/myrinet/intel/include/mpi.h" #line 706 "/opt/mpich/myrinet/intel/include/mpi.h" #line 4 "conftest.c" Found header files ['mpi.h'] in ['/opt/mpich/myrinet/intel/include'] ================================================================================ TEST configureConversion from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:163) TESTING: configureConversion from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:163) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MPI_COMM_F2C" to "1" sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MPI_COMM_C2F" to "1" sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureTypes from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:184) TESTING: configureTypes from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:184) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMissingPrototypes from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:212) TESTING: configureMissingPrototypes from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:212) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:468) TESTING: SGIMPICheck from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:468) Returns true if SGI MPI is used Checking for functions ['MPI_SGI_barrier'] in library [] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `MPI_SGI_barrier' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `MPI_SGI_barrier' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); int main() { MPI_SGI_barrier() ; return 0; } Popping language C SGI MPI test failure ================================================================================ TEST FortranMPICheck from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:478) TESTING: FortranMPICheck from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:478) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w -I/opt/mpich/myrinet/intel/include conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w -I/opt/mpich/myrinet/intel/include conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 221 Lines Compiled } Source: program main include 'mpif.h' end Checking for fortran mpi_init() Checking for functions [''] in library [] [] Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w -I/opt/mpich/myrinet/intel/include conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w -I/opt/mpich/myrinet/intel/include conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 223 Lines Compiled } Source: program main include 'mpif.h' integer ierr call mpi_init(ierr) end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language FC Popping language FC Checking for functions ['MPI_Alltoallw'] in library [] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `MPI_Alltoallw' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `MPI_Alltoallw' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Alltoallw(); int main() { MPI_Alltoallw() ; return 0; } Popping language C ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:120) TESTING: checkSharedLibrary from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:120) Check that the libraries for MPI are shared libraries ================================================================================ TEST configureMPIRUN from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:132) TESTING: configureMPIRUN from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:132) Checking for mpirun Pushing language C Popping language C Checking for program /opt/mpich/myrinet/intel/bin/mpiexec...not found Checking for program /opt/mpich/myrinet/intel/bin/mpirun...found Defined make macro "MPIRUN" to "/opt/mpich/myrinet/intel/bin/mpirun" sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: /opt/mpich/myrinet/intel/bin/mpirun -np 1 ./conftest sh: /opt/mpich/myrinet/intel/bin/mpirun -np 1 ./conftest Executing: /opt/mpich/myrinet/intel/bin/mpirun -np 1 ./conftest Runaway process exceeded time limit of 600.0s ERROR while running executable: Could not execute '/opt/mpich/myrinet/intel/bin/mpirun -np 1 ./conftest': Runaway processRunaway process exceeded time limit of 600.0s Library was not shared Popping language C ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:35) TESTING: configureMissingDefines from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:35) Checks for limits sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:45) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:45) Checks if u_short is undefined sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:51) TESTING: configureMissingFunctions from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:51) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:71) TESTING: configureMissingSignals from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:71) Check for missing signals, and define MISSING_ if necessary sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: ================================================================================ TEST configureMissingPrototypes from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:88) TESTING: configureMissingPrototypes from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:88) sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -O3 -Kc++ conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -O3 -Kc++ conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language Cxx ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:110) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:110) ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/libraryOptions.py:46) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/libraryOptions.py:46) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Checking for functions ['bgl_perfctr_void'] in library [''] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `bgl_perfctr_void' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `bgl_perfctr_void' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); int main() { bgl_perfctr_void() ; return 0; } Popping language C BGL/IBM test failure Defined "USE_32BIT_INT" to "1" ================================================================================ TEST configureISColorValueType from PETSc.utilities.libraryOptions(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/libraryOptions.py:98) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/libraryOptions.py:98) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_CHAR" Defined "IS_COLORING_MAX" to "255" Defined "IS_COLOR_VALUE_TYPE" to "char" ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Sieve(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Sieve(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PARTY(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Triangle(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Triangle(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spooles(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.spooles(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Matlab(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sprng(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.sprng(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Chaco(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ml(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.ml(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.TetGen(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.TetGen(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spai(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.spai(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need Sowing ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.babel(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.babel(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ParMetis(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.ParMetis(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Prometheus(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Prometheus(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.UMFPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.UMFPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ccafe(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.ccafe(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.fftw(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.fftw(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.blacs(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.blacs(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SCALAPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.SCALAPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MUMPS(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.MUMPS(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need c2html ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.FIAT(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.FIAT(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sundials(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.sundials(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MPE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.MPE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.hypre(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/hypre.py:131) TESTING: configureLibrary from PETSc.packages.hypre(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/hypre.py:131) Calls the regular package configureLibrary and then does an additional test needed by hypre ================================================================================== Checking for a functional hypre Could not locate an existing copy of hypre: []Downloading hypre Downloading ftp://ftp.mcs.anl.gov/pub/petsc/externalpackages/hypre-1.11.1b.tar.gz to /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre Uncompressing /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre.tar.gz sh: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages; gunzip hypre.tar.gz Executing: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages; gunzip hypre.tar.gz sh: Expanding /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre.tar sh: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages; tar -xf hypre.tar Executing: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages; tar -xf hypre.tar sh: sh: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages; tar -tf hypre.tar | head -n 1 Executing: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages; tar -tf hypre.tar | head -n 1 sh: hypre-1.11.1b/ sh: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages; chmod -R a+r hypre-1.11.1b/;find hypre-1.11.1b/ -type d -name "*" -exec chmod a+rx {} \; Executing: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages; chmod -R a+r hypre-1.11.1b/;find hypre-1.11.1b/ -type d -name "*" -exec chmod a+rx {} \; sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Have to rebuild HYPRE oldargs = new args =--prefix=/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre CC="/opt/mpich/myrinet/intel/bin/mpicc -fPIC -O3 " CXX="/opt/mpich/myrinet/intel/bin/mpicxx -O3 -Kc++ -fPIC " F77="/opt/mpich/myrinet/intel/bin/mpif90 -I. -fPIC -O -w90 -w " --with-MPI-include="/opt/mpich/myrinet/intel/include" --with-MPI-lib-dirs="" --with-MPI-libs="" --without-babel --without-mli --without-FEI --with-blas=yes --with-lapack=yes ================================================================================= Configuring hypre; this may take several minutes ================================================================================= sh: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src;make distclean;./configure --prefix=/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre CC="/opt/mpich/myrinet/intel/bin/mpicc -fPIC -O3 " CXX="/opt/mpich/myrinet/intel/bin/mpicxx -O3 -Kc++ -fPIC " F77="/opt/mpich/myrinet/intel/bin/mpif90 -I. -fPIC -O -w90 -w " --with-MPI-include="/opt/mpich/myrinet/intel/include" --with-MPI-lib-dirs="" --with-MPI-libs="" --without-babel --without-mli --without-FEI --with-blas=yes --with-lapack=yes Executing: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src;make distclean;./configure --prefix=/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre CC="/opt/mpich/myrinet/intel/bin/mpicc -fPIC -O3 " CXX="/opt/mpich/myrinet/intel/bin/mpicxx -O3 -Kc++ -fPIC " F77="/opt/mpich/myrinet/intel/bin/mpif90 -I. -fPIC -O -w90 -w " --with-MPI-include="/opt/mpich/myrinet/intel/include" --with-MPI-lib-dirs="" --with-MPI-libs="" --without-babel --without-mli --without-FEI --with-blas=yes --with-lapack=yes sh: Dist-cleaning utilities ... make[1]: Entering directory `/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src/utilities' rm -f *.o libHYPRE* f2c.h *blas.h *lapack.h rm -rf pchdir tca.map *inslog* make[1]: Leaving directory `/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src/utilities' Dist-cleaning krylov ... make[1]: Entering directory `/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src/krylov' rm -f *.o libHYPRE* rm -rf pchdir tca.map *inslog* make[1]: Leaving directory `/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11... ... gemm_ in -lessl... no checking for dgemm_ in -ldxml... no checking for dgemm_ in -lcxml... no checking for dgemm_ in -lmkl... no checking for dgemm_ in -lscs... no checking for dgemm_ in -latlas... no checking for dgemm_ in -lcomplib.sgimath... no checking for dgemm_ in -lsunmath... no checking for dsygv_ in -llapack... no checking for dsygv_ in -llapack_rs6k... no checking for cabs in -lm... yes checking the hostname... atlas1.nus.edu.sg checking the architecture... LINUX configure: creating ./config.status config.status: creating config/Makefile.config config.status: creating HYPRE_config.h ================================================================================= Compiling hypre; this may take several minutes ================================================================================= sh: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src;HYPRE_INSTALL_DIR=/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre;export HYPRE_INSTALL_DIR; make install Executing: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src;HYPRE_INSTALL_DIR=/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre;export HYPRE_INSTALL_DIR; make install sh: Making utilities ... make[1]: Entering directory `/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src/utilities' /opt/mpich/myrinet/intel/bin/mpicc -fPIC -O3 -O -I.. -I./.. -I. -I/opt/mpich/myrinet/intel/include -DHYPRE_TIMING -DHAVE_CONFIG_H -c amg_linklist.c /opt/mpich/myrinet/intel/bin/mpicc -fPIC -O3 -O -I.. -I./.. -I. -I/opt/mpich/myrinet/intel/include -DHYPRE_TIMING -DHAVE_CONFIG_H -c binsearch.c /opt/mpich/myrinet/intel/bin/mpicc -fPIC -O3 -O -I.. -I./.. -I. -I/opt/mpich/myrinet/intel/include -DHYPRE_TIMING -DHAVE_CONFIG_H -c exchange_data.c /opt/mpich/... ... 11.1b/linux-hypre/include cp -fr /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src/hypre/lib/* /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib/. cp -fr /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src/hypre/include/* /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/include/. chmod -R a+rX,u+w,go-w /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib chmod -R a+rX,u+w,go-w /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/include sh: /usr/bin/ranlib /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib/lib*.a Executing: /usr/bin/ranlib /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib/lib*.a sh: Checking for library in Download HYPRE: ['/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib/libHYPRE_DistributedMatrix.a', 'libHYPRE_DistributedMatrixPilutSolver.a', 'libHYPRE_Euclid.a', 'libHYPRE_IJ_mv.a', 'libHYPRE_LSI.a', 'libHYPRE_MatrixMatrix.a', 'libHYPRE_ParaSails.a', 'libHYPRE_krylov.a', 'libHYPRE_parcsr_ls.a', 'libHYPRE_parcsr_mv.a', 'libHYPRE_seq_mv.a', 'libHYPRE_sstruct_ls.a', 'libHYPRE_sstruct_mv.a', 'libHYPRE_struct_ls.a', 'libHYPRE_struct_mv.a', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-lpmpich++', '-Wl,-rpath,\\', '-L\\'] ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['HYPRE_IJMatrixCreate'] in library ['/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib/libHYPRE_DistributedMatrix.a', 'libHYPRE_DistributedMatrixPilutSolver.a', 'libHYPRE_Euclid.a', 'libHYPRE_IJ_mv.a', 'libHYPRE_LSI.a', 'libHYPRE_MatrixMatrix.a', 'libHYPRE_ParaSails.a', 'libHYPRE_krylov.a', 'libHYPRE_parcsr_ls.a', 'libHYPRE_parcsr_mv.a', 'libHYPRE_seq_mv.a', 'libHYPRE_sstruct_ls.a', 'libHYPRE_sstruct_mv.a', 'libHYPRE_struct_ls.a', 'libHYPRE_struct_mv.a', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-lpmpich++', '-Wl,-rpath,\\', '-L\\'] ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread', ' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib -L/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib -lHYPRE_DistributedMatrix -lHYPRE_DistributedMatrixPilutSolver -lHYPRE_Euclid -lHYPRE_IJ_mv -lHYPRE_LSI -lHYPRE_MatrixMatrix -lHYPRE_ParaSails -lHYPRE_krylov -lHYPRE_parcsr_ls -lHYPRE_parcsr_mv -lHYPRE_seq_mv -lHYPRE_sstruct_ls -lHYPRE_sstruct_mv -lHYPRE_struct_ls -lHYPRE_struct_mv -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib -L/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib -lHYPRE_DistributedMatrix -lHYPRE_DistributedMatrixPilutSolver -lHYPRE_Euclid -lHYPRE_IJ_mv -lHYPRE_LSI -lHYPRE_MatrixMatrix -lHYPRE_ParaSails -lHYPRE_krylov -lHYPRE_parcsr_ls -lHYPRE_parcsr_mv -lHYPRE_seq_mv -lHYPRE_sstruct_ls -lHYPRE_sstruct_mv -lHYPRE_struct_ls -lHYPRE_struct_mv -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: unrecognized option '-Wl,-rpath,' ld: use the --help option for usage information output: ret = 256 error message = {ld: unrecognized option '-Wl,-rpath,' ld: use the --help option for usage information } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib -L/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib -lHYPRE_DistributedMatrix -lHYPRE_DistributedMatrixPilutSolver -lHYPRE_Euclid -lHYPRE_IJ_mv -lHYPRE_LSI -lHYPRE_MatrixMatrix -lHYPRE_ParaSails -lHYPRE_krylov -lHYPRE_parcsr_ls -lHYPRE_parcsr_mv -lHYPRE_seq_mv -lHYPRE_sstruct_ls -lHYPRE_sstruct_mv -lHYPRE_struct_ls -lHYPRE_struct_mv -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char HYPRE_IJMatrixCreate(); int main() { HYPRE_IJMatrixCreate() ; return 0; } Popping language C ********************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): --------------------------------------------------------------------------------------- Downloaded hypre could not be used. Please check install in /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre ********************************************************************************* File "./config/configure.py", line 175, in petsc_configure framework.configure(out = sys.stdout) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/framework.py", line 876, in configure child.configure() File "/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py", line 373, in configure self.executeTest(self.configureLibrary) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/base.py", line 93, in executeTest return apply(test, args,kargs) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/hypre.py", line 134, in configureLibrary PETSc.package.Package.configureLibrary(self) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py", line 321, in configureLibrary for location, dir, lib, incl in self.generateGuesses(): File "/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py", line 177, in generateGuesses raise RuntimeError('Downloaded '+self.package+' could not be used. Please check install in '+d+'\n') ================================================================================= ================================================================================= Previous configure logs below ================================================================================= Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.guess Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.guess sh: i686-pc-linux-gnu sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.sub i686-pc-linux-gnu Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.sub i686-pc-linux-gnu sh: i686-pc-linux-gnu ================================================================================ ================================================================================ Starting Configure Run at Mon Feb 12 10:35:50 2007 Configure Options: --with-vendor-compilers=intel --with-blas-lapack-dir=/lsftmp/g0306332/inter/mkl/ --with-x=0 --with-shared --with-mpi-dir=/opt/mpich/myrinet/intel/ --with-debugging=0 --download-hypre=1 --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions Working directory: /nas/lsftmp/g0306332/petsc-2.3.2-p8 Python version: 2.2.3 (#1, Sep 30 2004, 22:31:19) [GCC 3.2.3 20030502 (Red Hat Linux 3.2.3-42)] ================================================================================ Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/framework.py:807) TESTING: configureExternalPackagesDir from config.framework(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/framework.py:807) ================================================================================ TEST configureLibrary from PETSc.packages.PVODE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.PVODE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/PVODE.py:10) Find a PVODE installation and check if it can work with PETSc ================================================================================ TEST configureLibrary from PETSc.packages.NetCDF(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/NetCDF.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/NetCDF.py:10) Find a NetCDF installation and check if it can work with PETSc ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /opt/mpich/myrinet/intel/bin/gdb...not found Checking for program /opt/gridengine/bin/glinux/gdb...not found Checking for program /usr/java/jdk1.5.0/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/globus/bin/gdb...not found Checking for program /opt/globus/sbin/gdb...not found Checking for program /usr/lsf6/bin/gdb...not found Checking for program /opt/mpich/myrinet/intel/bin/gdb...not found Checking for program /opt/gridengine/bin/glinux/gdb...not found Checking for program /usr/kerberos/bin/gdb...not found Checking for program /usr/java/jdk1.5.0/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /usr/lsf6/bin/gdb...not found Checking for program /usr/lsf6/etc/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /opt/mpich/myrinet/intel/bin/dbx...not found Checking for program /opt/gridengine/bin/glinux/dbx...not found Checking for program /usr/java/jdk1.5.0/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/globus/bin/dbx...not found Checking for program /opt/globus/sbin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /opt/mpich/myrinet/intel/bin/dbx...not found Checking for program /opt/gridengine/bin/glinux/dbx...not found Checking for program /usr/kerberos/bin/dbx...not found Checking for program /usr/java/jdk1.5.0/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /usr/lsf6/etc/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /app1/linux/amber8-2/exe/dbx...not found Checking for program /opt/ganglia/bin/dbx...not found Checking for program /opt/rocks/bin/dbx...not found Checking for program /opt/rocks/sbin/dbx...not found Checking for program /app1/linux/bin/dbx...not found Checking for program /app1/common/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /app1/linux/amber8-2/exe/dbx...not found Checking for program /opt/ganglia/bin/dbx...not found Checking for program /opt/rocks/bin/dbx...not found Checking for program /opt/rocks/sbin/dbx...not found Checking for program /app1/linux/bin/dbx...not found Checking for program /app1/common/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /home/enduser/g0306332/dbx...not found Checking for program /opt/mpich/myrinet/intel/bin/xdb...not found Checking for program /opt/gridengine/bin/glinux/xdb...not found Checking for program /usr/java/jdk1.5.0/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/globus/bin/xdb...not found Checking for program /opt/globus/sbin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /opt/mpich/myrinet/intel/bin/xdb...not found Checking for program /opt/gridengine/bin/glinux/xdb...not found Checking for program /usr/kerberos/bin/xdb...not found Checking for program /usr/java/jdk1.5.0/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /usr/lsf6/etc/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /app1/linux/amber8-2/exe/xdb...not found Checking for program /opt/ganglia/bin/xdb...not found Checking for program /opt/rocks/bin/xdb...not found Checking for program /opt/rocks/sbin/xdb...not found Checking for program /app1/linux/bin/xdb...not found Checking for program /app1/common/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /app1/linux/amber8-2/exe/xdb...not found Checking for program /opt/ganglia/bin/xdb...not found Checking for program /opt/rocks/bin/xdb...not found Checking for program /opt/rocks/sbin/xdb...not found Checking for program /app1/linux/bin/xdb...not found Checking for program /app1/common/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /home/enduser/g0306332/xdb...not found ================================================================================ TEST configureMake from PETSc.utilities.Make(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Make.py:21) TESTING: configureMake from PETSc.utilities.Make(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Make.py:21) Check various things about make Checking for program /opt/mpich/myrinet/intel/bin/make...not found Checking for program /opt/gridengine/bin/glinux/make...not found Checking for program /usr/java/jdk1.5.0/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/globus/bin/make...not found Checking for program /opt/globus/sbin/make...not found Checking for program /usr/lsf6/bin/make...not found Checking for program /opt/mpich/myrinet/intel/bin/make...not found Checking for program /opt/gridengine/bin/glinux/make...not found Checking for program /usr/kerberos/bin/make...not found Checking for program /usr/java/jdk1.5.0/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /usr/lsf6/bin/make...not found Checking for program /usr/lsf6/etc/make...not found Checking for program /usr/local/bin/make...not found Checking for program /bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" sh: strings /usr/bin/make Executing: strings /usr/bin/make sh: /lib/ld-linux.so.2 libc.so.6 strcpy mkstemp64 waitpid getloadavg __strtod_internal stdout getlogin readdir64 sigemptyset strerror fdopen memmove getopt_long getenv setlinebuf __rawmemchr __strtol_internal getpid qsort fgets memcpy dup2 feof malloc remove optarg opterr fflush sigaddset abort pipe strrchr __ctype_tolower_loc kill ctime strcat dcgettext chdir optind stdin wait fnmatch ferror strncmp unlink realloc __strdup sscanf sigaction fread __xstat64 gettimeofday localtime memset opendir __assert_fail strcmp getcwd strsignal getpwnam sprintf fclose setlocale stderr vfork __ctype_b_loc fwrite... ... PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) $(AS) $(ASFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) 3.79.1 i686-pc-linux-gnu /bin/sh #;"*?[]&|<>(){}$`^ -c .out .a .ln .o .c .cc .C .cpp .p .f .F .r .y .l .s .S .mod .sym .def .h .info .dvi .tex .texinfo .texi .txinfo .w .ch .web .sh .elc .el Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC} ${SOBJSC})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureBitKeeper from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:23) TESTING: configureBitKeeper from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:23) Find the BitKeeper executable Checking for program /opt/mpich/myrinet/intel/bin/bk...not found Checking for program /opt/gridengine/bin/glinux/bk...not found Checking for program /usr/java/jdk1.5.0/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/globus/bin/bk...not found Checking for program /opt/globus/sbin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /opt/mpich/myrinet/intel/bin/bk...not found Checking for program /opt/gridengine/bin/glinux/bk...not found Checking for program /usr/kerberos/bin/bk...not found Checking for program /usr/java/jdk1.5.0/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /usr/lsf6/etc/bk...not found Checking for program /usr/local/bin/bk...not found Checking for program /bin/bk...not found Checking for program /usr/bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /app1/linux/amber8-2/exe/bk...not found Checking for program /opt/ganglia/bin/bk...not found Checking for program /opt/rocks/bin/bk...not found Checking for program /opt/rocks/sbin/bk...not found Checking for program /app1/linux/bin/bk...not found Checking for program /app1/common/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /app1/linux/amber8-2/exe/bk...not found Checking for program /opt/ganglia/bin/bk...not found Checking for program /opt/rocks/bin/bk...not found Checking for program /opt/rocks/sbin/bk...not found Checking for program /app1/linux/bin/bk...not found Checking for program /app1/common/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /home/enduser/g0306332/bk...not found ================================================================================ TEST configureCVS from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:30) TESTING: configureCVS from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:30) Find the CVS executable Checking for program /opt/mpich/myrinet/intel/bin/cvs...not found Checking for program /opt/gridengine/bin/glinux/cvs...not found Checking for program /usr/java/jdk1.5.0/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/globus/bin/cvs...not found Checking for program /opt/globus/sbin/cvs...not found Checking for program /usr/lsf6/bin/cvs...not found Checking for program /opt/mpich/myrinet/intel/bin/cvs...not found Checking for program /opt/gridengine/bin/glinux/cvs...not found Checking for program /usr/kerberos/bin/cvs...not found Checking for program /usr/java/jdk1.5.0/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /usr/lsf6/bin/cvs...not found Checking for program /usr/lsf6/etc/cvs...not found Checking for program /usr/local/bin/cvs...not found Checking for program /bin/cvs...not found Checking for program /usr/bin/cvs...found Defined make macro "CVS" to "cvs" ================================================================================ TEST configureSubversion from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:35) TESTING: configureSubversion from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:35) Find the Subversion executable Checking for program /opt/mpich/myrinet/intel/bin/svn...not found Checking for program /opt/gridengine/bin/glinux/svn...not found Checking for program /usr/java/jdk1.5.0/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/globus/bin/svn...not found Checking for program /opt/globus/sbin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /opt/mpich/myrinet/intel/bin/svn...not found Checking for program /opt/gridengine/bin/glinux/svn...not found Checking for program /usr/kerberos/bin/svn...not found Checking for program /usr/java/jdk1.5.0/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /usr/lsf6/etc/svn...not found Checking for program /usr/local/bin/svn...not found Checking for program /bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /usr/X11R6/bin/svn...not found Checking for program /app1/linux/amber8-2/exe/svn...not found Checking for program /opt/ganglia/bin/svn...not found Checking for program /opt/rocks/bin/svn...not found Checking for program /opt/rocks/sbin/svn...not found Checking for program /app1/linux/bin/svn...not found Checking for program /app1/common/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /app1/linux/amber8-2/exe/svn...not found Checking for program /opt/ganglia/bin/svn...not found Checking for program /opt/rocks/bin/svn...not found Checking for program /opt/rocks/sbin/svn...not found Checking for program /app1/linux/bin/svn...not found Checking for program /app1/common/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /usr/X11R6/bin/svn...not found Checking for program /home/enduser/g0306332/svn...not found ================================================================================ TEST configureMkdir from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:21) TESTING: configureMkdir from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:21) Make sure we can have mkdir automatically make intermediate directories Checking for program /opt/mpich/myrinet/intel/bin/mkdir...not found Checking for program /opt/gridengine/bin/glinux/mkdir...not found Checking for program /usr/java/jdk1.5.0/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/globus/bin/mkdir...not found Checking for program /opt/globus/sbin/mkdir...not found Checking for program /usr/lsf6/bin/mkdir...not found Checking for program /opt/mpich/myrinet/intel/bin/mkdir...not found Checking for program /opt/gridengine/bin/glinux/mkdir...not found Checking for program /usr/kerberos/bin/mkdir...not found Checking for program /usr/java/jdk1.5.0/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /usr/lsf6/bin/mkdir...not found Checking for program /usr/lsf6/etc/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /bin/mkdir...found sh: /bin/mkdir -p .conftest/tmp Executing: /bin/mkdir -p .conftest/tmp sh: Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configurePrograms from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:43) TESTING: configurePrograms from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:43) Check for the programs needed to build and run PETSc Checking for program /opt/mpich/myrinet/intel/bin/sh...not found Checking for program /opt/gridengine/bin/glinux/sh...not found Checking for program /usr/java/jdk1.5.0/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/globus/bin/sh...not found Checking for program /opt/globus/sbin/sh...not found Checking for program /usr/lsf6/bin/sh...not found Checking for program /opt/mpich/myrinet/intel/bin/sh...not found Checking for program /opt/gridengine/bin/glinux/sh...not found Checking for program /usr/kerberos/bin/sh...not found Checking for program /usr/java/jdk1.5.0/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /usr/lsf6/bin/sh...not found Checking for program /usr/lsf6/etc/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /opt/mpich/myrinet/intel/bin/sed...not found Checking for program /opt/gridengine/bin/glinux/sed...not found Checking for program /usr/java/jdk1.5.0/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/globus/bin/sed...not found Checking for program /opt/globus/sbin/sed...not found Checking for program /usr/lsf6/bin/sed...not found Checking for program /opt/mpich/myrinet/intel/bin/sed...not found Checking for program /opt/gridengine/bin/glinux/sed...not found Checking for program /usr/kerberos/bin/sed...not found Checking for program /usr/java/jdk1.5.0/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /usr/lsf6/bin/sed...not found Checking for program /usr/lsf6/etc/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" Checking for program /opt/mpich/myrinet/intel/bin/mv...not found Checking for program /opt/gridengine/bin/glinux/mv...not found Checking for program /usr/java/jdk1.5.0/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/globus/bin/mv...not found Checking for program /opt/globus/sbin/mv...not found Checking for program /usr/lsf6/bin/mv...not found Checking for program /opt/mpich/myrinet/intel/bin/mv...not found Checking for program /opt/gridengine/bin/glinux/mv...not found Checking for program /usr/kerberos/bin/mv...not found Checking for program /usr/java/jdk1.5.0/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /usr/lsf6/bin/mv...not found Checking for program /usr/lsf6/etc/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /opt/mpich/myrinet/intel/bin/cp...not found Checking for program /opt/gridengine/bin/glinux/cp...not found Checking for program /usr/java/jdk1.5.0/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/globus/bin/cp...not found Checking for program /opt/globus/sbin/cp...not found Checking for program /usr/lsf6/bin/cp...not found Checking for program /opt/mpich/myrinet/intel/bin/cp...not found Checking for program /opt/gridengine/bin/glinux/cp...not found Checking for program /usr/kerberos/bin/cp...not found Checking for program /usr/java/jdk1.5.0/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /usr/lsf6/bin/cp...not found Checking for program /usr/lsf6/etc/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /opt/mpich/myrinet/intel/bin/grep...not found Checking for program /opt/gridengine/bin/glinux/grep...not found Checking for program /usr/java/jdk1.5.0/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/globus/bin/grep...not found Checking for program /opt/globus/sbin/grep...not found Checking for program /usr/lsf6/bin/grep...not found Checking for program /opt/mpich/myrinet/intel/bin/grep...not found Checking for program /opt/gridengine/bin/glinux/grep...not found Checking for program /usr/kerberos/bin/grep...not found Checking for program /usr/java/jdk1.5.0/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /usr/lsf6/bin/grep...not found Checking for program /usr/lsf6/etc/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /opt/mpich/myrinet/intel/bin/rm...not found Checking for program /opt/gridengine/bin/glinux/rm...not found Checking for program /usr/java/jdk1.5.0/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/globus/bin/rm...not found Checking for program /opt/globus/sbin/rm...not found Checking for program /usr/lsf6/bin/rm...not found Checking for program /opt/mpich/myrinet/intel/bin/rm...not found Checking for program /opt/gridengine/bin/glinux/rm...not found Checking for program /usr/kerberos/bin/rm...not found Checking for program /usr/java/jdk1.5.0/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /usr/lsf6/bin/rm...not found Checking for program /usr/lsf6/etc/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /opt/mpich/myrinet/intel/bin/diff...not found Checking for program /opt/gridengine/bin/glinux/diff...not found Checking for program /usr/java/jdk1.5.0/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/globus/bin/diff...not found Checking for program /opt/globus/sbin/diff...not found Checking for program /usr/lsf6/bin/diff...not found Checking for program /opt/mpich/myrinet/intel/bin/diff...not found Checking for program /opt/gridengine/bin/glinux/diff...not found Checking for program /usr/kerberos/bin/diff...not found Checking for program /usr/java/jdk1.5.0/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /usr/lsf6/bin/diff...not found Checking for program /usr/lsf6/etc/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /bin/diff...not found Checking for program /usr/bin/diff...found sh: /usr/bin/diff -w diff1 diff2 Executing: /usr/bin/diff -w diff1 diff2 sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/enduser/g0306332/ps...not found Checking for program /opt/mpich/myrinet/intel/bin/gzip...not found Checking for program /opt/gridengine/bin/glinux/gzip...not found Checking for program /usr/java/jdk1.5.0/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/globus/bin/gzip...not found Checking for program /opt/globus/sbin/gzip...not found Checking for program /usr/lsf6/bin/gzip...not found Checking for program /opt/mpich/myrinet/intel/bin/gzip...not found Checking for program /opt/gridengine/bin/glinux/gzip...not found Checking for program /usr/kerberos/bin/gzip...not found Checking for program /usr/java/jdk1.5.0/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /usr/lsf6/bin/gzip...not found Checking for program /usr/lsf6/etc/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /bin/gzip...found Defined make macro "GZIP" to "/bin/gzip" Defined "HAVE_GZIP" to "1" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:39) TESTING: configureCLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:39) Choose between C and C++ bindings ================================================================================ TEST configureLanguageSupport from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:45) TESTING: configureLanguageSupport from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:45) Check c-support c++-support and other misc tests Allowing C++ name mangling C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureExternC from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:62) TESTING: configureExternC from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:62) Protect C bindings from C++ mangling Defined "USE_EXTERN_CXX" to " " ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:68) TESTING: configureFortranLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:68) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:34) TESTING: configureDirectories from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:34) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 2 #define PETSC_VERSION_MINOR 3 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 8 #define PETSC_VERSION_DATE "September, 1, 2006" #define PETSC_VERSION_PATCH_DATE "Tue Jan 2 14:33:59 PST 2007" #define PETSC_VERSION_HG "ebeddcedcc065e32fc252af32cf1d01ed4fc7a80" Defined make macro "DIR" to "/nas/lsftmp/g0306332/petsc-2.3.2-p8" Defined "DIR" to "/nas/lsftmp/g0306332/petsc-2.3.2-p8" sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.guess Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.guess sh: i686-pc-linux-gnu sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.sub i686-pc-linux-gnu Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.sub i686-pc-linux-gnu sh: i686-pc-linux-gnu ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:112) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:112) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:119) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:119) This is a tarball installation ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST configureETags from PETSc.utilities.Etags(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST checkVendor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:208) TESTING: checkVendor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:208) Determine the compiler vendor Compiler vendor is "intel" ================================================================================ TEST checkInitialFlags from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:218) TESTING: checkInitialFlags from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:218) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized executableFlags to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:326) TESTING: checkCCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:326) Locate a functional C compiler Checking for program /opt/mpich/myrinet/intel/bin/mpicc...found Defined make macro "CC" to "/opt/mpich/myrinet/intel/bin/mpicc" Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest conftest.o sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest conftest.o sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:375) TESTING: checkCPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:375) Locate a functional C preprocessor Checking for program /opt/mpich/myrinet/intel/bin/mpicc...found Defined make macro "CPP" to "/opt/mpich/myrinet/intel/bin/mpicc -E" Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/stdlib.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; #line 870 "/usr/include/stdlib.h" #line 901 "/usr/include/stdlib.h" #line 911 "/usr/include/stdlib.h" extern int getloadavg (double __loadavg[], int __nelem) ; #line 4 "conftest.c" Popping language C ================================================================================ TEST checkCxxCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:478) TESTING: checkCxxCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:478) Locate a functional Cxx compiler Checking for program /opt/mpich/myrinet/intel/bin/mpicxx...found Defined make macro "CXX" to "/opt/mpich/myrinet/intel/bin/mpicxx" Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc sh: sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest conftest.o sh: sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest conftest.o sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:530) TESTING: checkCxxPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:530) Locate a functional Cxx preprocessor Checking for program /opt/mpich/myrinet/intel/bin/mpicxx...found Defined make macro "CXXCPP" to "/opt/mpich/myrinet/intel/bin/mpicxx -E" Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -E conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -E conftest.cc sh: #line 1 "conftest.cc" #line 1 "confdefs.h" #line 2 "conftest.cc" #line 1 "conffix.h" extern "C" { } #line 3 "conftest.cc" #line 1 "/opt/intel/compiler70/ia32/include/cstdlib" #line 1 "/opt/intel/compiler70/ia32/include/yvals.h" #line 1 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 1 "/opt/intel/compiler70/ia32/include/xarg.h" typedef char * va_list; typedef va_list __gnuc_va_list; #line 114 "/opt/intel/compiler70/ia32/include/xarg.h" #line 30 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 43 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 8 "/opt/intel/compiler... ... bs(_Left)); } inline ldiv_t (div)(long _Left, long _Right) { return (ldiv(_Left, _Right)); } using ::size_t; using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; } #line 4 "conftest.cc" Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:638) TESTING: checkFortranCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:638) Locate a functional Fortran compiler Checking for program /opt/mpich/myrinet/intel/bin/mpif90...found Defined make macro "FC" to "/opt/mpich/myrinet/intel/bin/mpif90" Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest conftest.o sh: sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest conftest.o sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:673) TESTING: checkFortranComments from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:673) Make sure fortran comment "!" works Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 5 Lines Compiled } Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkBrokenMpif90 from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:682) TESTING: checkBrokenMpif90 from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:682) mpif90 from mpich1 and older c-preprocessor combinations misbehave Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Added FC compiler flag -I. Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:722) TESTING: checkPIC from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:722) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Trying C compiler flag -PIC sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -PIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -PIC conftest.o sh: Possible ERROR while running linker: icc: Command line warning: ignoring option '-P'; no argument required output: error message = {icc: Command line warning: ignoring option '-P'; no argument required } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -PIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting C linker flag -PIC due to icc: Command line warning: ignoring option '-P'; no argument required Rejected C compiler flag -PIC because linker cannot handle it Trying C compiler flag -fPIC sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o sh: Valid C linker flag -fPIC Adding C compiler flag -fPIC sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Added C compiler flag -fPIC Popping language C Pushing language Cxx Trying Cxx compiler flag -PIC sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -PIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -PIC conftest.o sh: Possible ERROR while running linker: icc: Command line warning: ignoring option '-P'; no argument required output: error message = {icc: Command line warning: ignoring option '-P'; no argument required } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -PIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting Cxx linker flag -PIC due to icc: Command line warning: ignoring option '-P'; no argument required Rejected Cxx compiler flag -PIC because linker cannot handle it Trying Cxx compiler flag -fPIC sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -fPIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -fPIC conftest.o sh: Valid Cxx linker flag -fPIC Adding Cxx compiler flag -fPIC sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -fPIC conftest.cc sh: Added Cxx compiler flag -fPIC Popping language Cxx Pushing language FC Trying FC compiler flag -PIC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -PIC -I. conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -PIC -I. conftest.o sh: Possible ERROR while running linker: ifc: Command line warning: ignoring option '-P'; no argument required output: error message = {ifc: Command line warning: ignoring option '-P'; no argument required } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -PIC -I. conftest.o Source: program main end Rejecting FC linker flag -PIC due to ifc: Command line warning: ignoring option '-P'; no argument required Rejected FC compiler flag -PIC because linker cannot handle it Trying FC compiler flag -fPIC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -fPIC -I. conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -fPIC -I. conftest.o sh: Valid FC linker flag -fPIC Adding FC compiler flag -fPIC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Added FC compiler flag -fPIC Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:762) TESTING: checkLargeFileIO from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:762) ================================================================================ TEST checkArchiver from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:852) TESTING: checkArchiver from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:852) Check that the archiver exists and can make a library usable by the compiler Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Checking for program /opt/mpich/myrinet/intel/bin/ar...not found Checking for program /opt/gridengine/bin/glinux/ar...not found Checking for program /usr/java/jdk1.5.0/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/globus/bin/ar...not found Checking for program /opt/globus/sbin/ar...not found Checking for program /usr/lsf6/bin/ar...not found Checking for program /opt/mpich/myrinet/intel/bin/ar...not found Checking for program /opt/gridengine/bin/glinux/ar...not found Checking for program /usr/kerberos/bin/ar...not found Checking for program /usr/java/jdk1.5.0/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /usr/lsf6/bin/ar...not found Checking for program /usr/lsf6/etc/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /opt/mpich/myrinet/intel/bin/ranlib...not found Checking for program /opt/gridengine/bin/glinux/ranlib...not found Checking for program /usr/java/jdk1.5.0/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/globus/bin/ranlib...not found Checking for program /opt/globus/sbin/ranlib...not found Checking for program /usr/lsf6/bin/ranlib...not found Checking for program /opt/mpich/myrinet/intel/bin/ranlib...not found Checking for program /opt/gridengine/bin/glinux/ranlib...not found Checking for program /usr/kerberos/bin/ranlib...not found Checking for program /usr/java/jdk1.5.0/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /usr/lsf6/bin/ranlib...not found Checking for program /usr/lsf6/etc/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib -c libconf1.a Executing: /usr/bin/ranlib -c libconf1.a sh: Possible ERROR while running ranlib: ret = 2304 error message = {/usr/bin/ranlib: -c: No such file or directory } Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Checking for program /opt/mpich/myrinet/intel/bin/ar...not found Checking for program /opt/gridengine/bin/glinux/ar...not found Checking for program /usr/java/jdk1.5.0/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/globus/bin/ar...not found Checking for program /opt/globus/sbin/ar...not found Checking for program /usr/lsf6/bin/ar...not found Checking for program /opt/mpich/myrinet/intel/bin/ar...not found Checking for program /opt/gridengine/bin/glinux/ar...not found Checking for program /usr/kerberos/bin/ar...not found Checking for program /usr/java/jdk1.5.0/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /usr/lsf6/bin/ar...not found Checking for program /usr/lsf6/etc/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /opt/mpich/myrinet/intel/bin/ranlib...not found Checking for program /opt/gridengine/bin/glinux/ranlib...not found Checking for program /usr/java/jdk1.5.0/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/globus/bin/ranlib...not found Checking for program /opt/globus/sbin/ranlib...not found Checking for program /usr/lsf6/bin/ranlib...not found Checking for program /opt/mpich/myrinet/intel/bin/ranlib...not found Checking for program /opt/gridengine/bin/glinux/ranlib...not found Checking for program /usr/kerberos/bin/ranlib...not found Checking for program /usr/java/jdk1.5.0/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /usr/lsf6/bin/ranlib...not found Checking for program /usr/lsf6/etc/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib libconf1.a Executing: /usr/bin/ranlib libconf1.a sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -L. -lconf1 Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -L. -lconf1 sh: Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:955) TESTING: checkSharedLinker from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:955) Check that the linker can produce shared libraries Checking shared linker /opt/mpich/myrinet/intel/bin/mpicc using flags ['-shared'] Checking for program /opt/mpich/myrinet/intel/bin/mpicc...found Defined make macro "LD_SHARED" to "/opt/mpich/myrinet/intel/bin/mpicc" sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -shared -fPIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -shared -fPIC conftest.o sh: Valid C linker flag -shared sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC conftest.o sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -L. -lconftest Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -L. -lconftest sh: Using shared linker /opt/mpich/myrinet/intel/bin/mpicc with flags ['-shared'] and library extension so sh: uname -s Executing: uname -s sh: Linux ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1026) TESTING: checkSharedLinkerPaths from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1026) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -flags Executing: /opt/mpich/myrinet/intel/bin/mpicc -flags sh: Trying C linker flag -Wl,-rpath, sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 -fPIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 -fPIC conftest.o sh: Valid C linker flag -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 Popping language C Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicc -flags Executing: /opt/mpich/myrinet/intel/bin/mpicc -flags sh: Trying Cxx linker flag -Wl,-rpath, sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -fPIC conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 conftest.o sh: Valid Cxx linker flag -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 Popping language Cxx Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpicc -flags Executing: /opt/mpich/myrinet/intel/bin/mpicc -flags sh: Trying FC linker flag -Wl,-rpath, sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 -I. -fPIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 -I. -fPIC conftest.o sh: Valid FC linker flag -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1056) TESTING: checkLibC from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1056) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC conftest.o sh: Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1100) TESTING: checkDynamicLinker from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1100) Check that the linker can produce dynamic libraries Checking for header: dlfcn.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/dlfcn.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/include... ... #line 10 "/opt/intel/compiler70/ia32/include/stddef.h" typedef _Ptrdifft ptrdiff_t; typedef _Sizet size_t; typedef _Wchart wchar_t; #line 26 "/usr/include/dlfcn.h" #line 1 "/usr/include/bits/dlfcn.h" #line 29 "/usr/include/dlfcn.h" #line 43 "/usr/include/dlfcn.h" extern void *dlopen (__const char *__file, int __mode) ; extern int dlclose (void *__handle) ; extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) ; #line 67 "/usr/include/dlfcn.h" extern char *dlerror (void) ; #line 155 "/usr/include/dlfcn.h" #line 4 "conftest.c" Defined "HAVE_DLFCN_H" to "1" Checking for functions ['dlopen', 'dlsym', 'dlclose'] in library ['dl'] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -ldl sh: Popping language C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -ldl sh: Popping language C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -ldl sh: Popping language C Adding ['dl'] to LIBS sh: uname -s Executing: uname -s sh: Linux Checking dynamic linker /opt/mpich/myrinet/intel/bin/mpicc using flags ['-shared'] Checking for program /opt/mpich/myrinet/intel/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/opt/mpich/myrinet/intel/bin/mpicc" sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -shared -fPIC conftest.o -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -shared -fPIC conftest.o -ldl sh: Valid C linker flag -shared sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC conftest.o -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC conftest.o -ldl sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(11): warning #266: function declared implicitly printf("%s\n", dlerror()); ^ conftest.c(15): warning #266: function declared implicitly printf("Invalid return from foo()\n"); ^ conftest.c(19): warning #266: function declared implicitly printf("Could not close library\n"); ^ } Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("./libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("%s\n", dlerror()); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC conftest.o -ldl sh: Using dynamic linker /opt/mpich/myrinet/intel/bin/mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1146) TESTING: output from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1146) Output module data as defines and substitutions Substituting "CC" with "/opt/mpich/myrinet/intel/bin/mpicc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/opt/mpich/myrinet/intel/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/opt/mpich/myrinet/intel/bin/mpicxx" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "/opt/mpich/myrinet/intel/bin/mpicxx -E" Substituting "FC" with "/opt/mpich/myrinet/intel/bin/mpif90" Substituting "FFLAGS" with " -I. -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilerFlags.py:66) TESTING: configureCompilerFlags from config.compilerFlags(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilerFlags.py:66) Get the default compiler flags Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc --version Executing: /opt/mpich/myrinet/intel/bin/mpicc --version sh: Could not determine compiler version: Could not execute '/opt/mpich/myrinet/intel/bin/mpicc --version': icc: Command line warning: ignoring unknown option '-fversion' /usr/lib/crt1.o(.text+0x18): In function `_start': : undefined reference to `main' getCompilerVersion: /opt/mpich/myrinet/intel/bin/mpicc Unknown sh: /opt/mpich/myrinet/intel/bin/mpicc -show Executing: /opt/mpich/myrinet/intel/bin/mpicc -show sh: icc -DUSE_STDARG -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDARG_H=1 -DUSE_STDARG=1 -DMALLOC_RET_VOID=1 -L/opt/mpich/myrinet/intel/lib -lmpich -L/opt/gm/lib -lgm -lpthread sh: icc --help Executing: icc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. sh: icc --help Executing: icc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. Trying C compiler flag -wd1572 sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -wd1572 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -wd1572 conftest.c sh: Possible ERROR while running compiler: ret = 1024 error message = {Command-line error: invalid error number: 1572 compilation aborted for conftest.c (code 4) } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -wd1572 due to nonzero status from link Rejecting compiler flag -wd1572 due to Command-line error: invalid error number: 1572 compilation aborted for conftest.c (code 4) PETSc Error: No output file produced Rejected C compiler flag -wd1572 sh: /opt/mpich/myrinet/intel/bin/mpicc -show Executing: /opt/mpich/myrinet/intel/bin/mpicc -show sh: icc -DUSE_STDARG -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDARG_H=1 -DUSE_STDARG=1 -DMALLOC_RET_VOID=1 -L/opt/mpich/myrinet/intel/lib -lmpich -L/opt/gm/lib -lgm -lpthread sh: icc --help Executing: icc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. sh: icc --help Executing: icc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. Trying C compiler flag -O3 sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Added C compiler flag -O3 Popping language C Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx --version Executing: /opt/mpich/myrinet/intel/bin/mpicxx --version sh: Could not determine compiler version: Could not execute '/opt/mpich/myrinet/intel/bin/mpicxx --version': icc: Command line warning: ignoring unknown option '-fversion' /usr/lib/crt1.o(.text+0x18): In function `_start': : undefined reference to `main' getCompilerVersion: /opt/mpich/myrinet/intel/bin/mpicxx Unknown sh: /opt/mpich/myrinet/intel/bin/mpicxx -show Executing: /opt/mpich/myrinet/intel/bin/mpicxx -show sh: icc -DUSE_STDARG -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDARG_H=1 -DUSE_STDARG=1 -DMALLOC_RET_VOID=1 -L/opt/mpich/myrinet/intel/lib -lpmpich++ -lmpich -L/opt/gm/lib -lgm -lpthread sh: icc --help Executing: icc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. sh: icc --help Executing: icc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. Trying Cxx compiler flag -wd1572 sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -wd1572 -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -wd1572 -fPIC conftest.cc sh: Possible ERROR while running compiler: ret = 1024 error message = {Command-line error: invalid error number: 1572 compilation aborted for conftest.cc (code 4) } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -wd1572 due to nonzero status from link Rejecting compiler flag -wd1572 due to Command-line error: invalid error number: 1572 compilation aborted for conftest.cc (code 4) PETSc Error: No output file produced Rejected Cxx compiler flag -wd1572 sh: /opt/mpich/myrinet/intel/bin/mpicxx -show Executing: /opt/mpich/myrinet/intel/bin/mpicxx -show sh: icc -DUSE_STDARG -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDARG_H=1 -DUSE_STDARG=1 -DMALLOC_RET_VOID=1 -L/opt/mpich/myrinet/intel/lib -lpmpich++ -lmpich -L/opt/gm/lib -lgm -lpthread sh: icc --help Executing: icc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. sh: icc --help Executing: icc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. Trying Cxx compiler flag -O3 sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc sh: Added Cxx compiler flag -O3 Popping language Cxx Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -V Executing: /opt/mpich/myrinet/intel/bin/mpif90 -V sh: GNU ld version 2.14.90.0.4 20030523 Supported emulations: elf_i386 i386linux Could not determine compiler version: Could not execute '/opt/mpich/myrinet/intel/bin/mpif90 -V': GNU ld version 2.14.90.0.4 20030523 Supported emulations: elf_i386 i386linux Intel(R) Fortran Compiler for 32-bit applications, Version 7.1 Build 20030922Z Copyright (C) 1985-2003 Intel Corporation. All rights reserved. /usr/lib/crt1.o(.text+0x18): In function `_start': : undefined reference to `main' getCompilerVersion: /opt/mpich/myrinet/intel/bin/mpif90 Unknown sh: /opt/mpich/myrinet/intel/bin/mpif90 -show Executing: /opt/mpich/myrinet/intel/bin/mpif90 -show sh: ln -s /opt/mpich/myrinet/intel/include/mpif.h mpif.h ifc -L/opt/mpich/myrinet/intel/lib -lmpichf90 -lmpich -L/opt/gm/lib -lgm -lpthread -lPEPCF90 rm -f mpif.h sh: ln --help Executing: ln --help sh: Usage: ln [OPTION]... TARGET [LINK_NAME] or: ln [OPTION]... TARGET... DIRECTORY or: ln [OPTION]... --target-directory=DIRECTORY TARGET... Create a link to the specified TARGET with optional LINK_NAME. If LINK_NAME is omitted, a link with the same basename as the TARGET is created in the current directory. When using the second form with more than one TARGET, the last argument must be a directory; create links in DIRECTORY to each TARGET. Create hard links by default, symbolic links with --symbolic. When creating hard links, each TARGET must exist. Mandatory arguments to long options ... ... ach file before linking --help display this help and exit --version output version information and exit The backup suffix is `~', unless set with --suffix or SIMPLE_BACKUP_SUFFIX. The version control method may be selected via the --backup option or through the VERSION_CONTROL environment variable. Here are the values: none, off never make backups (even if --backup is given) numbered, t make numbered backups existing, nil numbered if numbered backups exist, simple otherwise simple, never always make simple backups Report bugs to . sh: ln --help Executing: ln --help sh: Usage: ln [OPTION]... TARGET [LINK_NAME] or: ln [OPTION]... TARGET... DIRECTORY or: ln [OPTION]... --target-directory=DIRECTORY TARGET... Create a link to the specified TARGET with optional LINK_NAME. If LINK_NAME is omitted, a link with the same basename as the TARGET is created in the current directory. When using the second form with more than one TARGET, the last argument must be a directory; create links in DIRECTORY to each TARGET. Create hard links by default, symbolic links with --symbolic. When creating hard links, each TARGET must exist. Mandatory arguments to long options ... ... ach file before linking --help display this help and exit --version output version information and exit The backup suffix is `~', unless set with --suffix or SIMPLE_BACKUP_SUFFIX. The version control method may be selected via the --backup option or through the VERSION_CONTROL environment variable. Here are the values: none, off never make backups (even if --backup is given) numbered, t make numbered backups existing, nil numbered if numbered backups exist, simple otherwise simple, never always make simple backups Report bugs to . sh: /opt/mpich/myrinet/intel/bin/mpif90 -show Executing: /opt/mpich/myrinet/intel/bin/mpif90 -show sh: ln -s /opt/mpich/myrinet/intel/include/mpif.h mpif.h ifc -L/opt/mpich/myrinet/intel/lib -lmpichf90 -lmpich -L/opt/gm/lib -lgm -lpthread -lPEPCF90 rm -f mpif.h sh: ln --help Executing: ln --help sh: Usage: ln [OPTION]... TARGET [LINK_NAME] or: ln [OPTION]... TARGET... DIRECTORY or: ln [OPTION]... --target-directory=DIRECTORY TARGET... Create a link to the specified TARGET with optional LINK_NAME. If LINK_NAME is omitted, a link with the same basename as the TARGET is created in the current directory. When using the second form with more than one TARGET, the last argument must be a directory; create links in DIRECTORY to each TARGET. Create hard links by default, symbolic links with --symbolic. When creating hard links, each TARGET must exist. Mandatory arguments to long options ... ... ach file before linking --help display this help and exit --version output version information and exit The backup suffix is `~', unless set with --suffix or SIMPLE_BACKUP_SUFFIX. The version control method may be selected via the --backup option or through the VERSION_CONTROL environment variable. Here are the values: none, off never make backups (even if --backup is given) numbered, t make numbered backups existing, nil numbered if numbered backups exist, simple otherwise simple, never always make simple backups Report bugs to . sh: ln --help Executing: ln --help sh: Usage: ln [OPTION]... TARGET [LINK_NAME] or: ln [OPTION]... TARGET... DIRECTORY or: ln [OPTION]... --target-directory=DIRECTORY TARGET... Create a link to the specified TARGET with optional LINK_NAME. If LINK_NAME is omitted, a link with the same basename as the TARGET is created in the current directory. When using the second form with more than one TARGET, the last argument must be a directory; create links in DIRECTORY to each TARGET. Create hard links by default, symbolic links with --symbolic. When creating hard links, each TARGET must exist. Mandatory arguments to long options ... ... ach file before linking --help display this help and exit --version output version information and exit The backup suffix is `~', unless set with --suffix or SIMPLE_BACKUP_SUFFIX. The version control method may be selected via the --backup option or through the VERSION_CONTROL environment variable. Here are the values: none, off never make backups (even if --backup is given) numbered, t make numbered backups existing, nil numbered if numbered backups exist, simple otherwise simple, never always make simple backups Report bugs to . Trying FC compiler flag -O sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Added FC compiler flag -O Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================= WARNING! Compiling PETSc with no debugging, this should only be done for timing and production runs. All development should be done when configured using --with-debugging=1 ================================================================================= ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/arch.py:39) TESTING: configureArchitecture from PETSc.utilities.arch(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/arch.py:39) Checks PETSC_ARCH and sets if not set Defined "ARCH" to "linux" Defined "ARCH_NAME" to ""linux-hypre"" Substituting "ARCH" with "linux-hypre" ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/sharedLibraries.py:41) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/sharedLibraries.py:41) sh: uname -s Executing: uname -s sh: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "BUILDSHAREDLIB" to "yes" ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/sharedLibraries.py:53) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/sharedLibraries.py:53) Checks whether dynamic libraries should be used, for which you must - Specify --with-dynamic - Have found a working dynamic linker (with dlfcn.h and libdl) Defines PETSC_USE_DYNAMIC_LIBRARIES if they are used Dynamic libraries - disabled ================================================================================ TEST configureBmakeDir from PETSc.utilities.bmakeDir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/bmakeDir.py:26) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/bmakeDir.py:26) Makes bmake/$PETSC_ARCH if it does not exist Changed persistence directory to bmake/linux-hypre sh: /opt/mpich/myrinet/intel/bin/mpicc --help Executing: /opt/mpich/myrinet/intel/bin/mpicc --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. ================================================================================ TEST checkRestrict from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:126) TESTING: checkRestrict from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:126) Check for the C/CXX restrict keyword Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: ret = 512 error message = {conftest.c(5): error: expected a ";" float * restrict x;; ^ compilation aborted for conftest.c (code 2) } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:244) TESTING: checkCFormatting from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:244) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:97) TESTING: checkCStaticInline from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:97) Check for C keyword: static inline Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:254) TESTING: checkDynamicLoadFlag from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:254) Checks that dlopen() takes RTLD_GLOBAL, and defines PETSC_HAVE_RTLD_GLOBAL if it does sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -ldl sh: Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:153) TESTING: checkCLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:153) Determines the libraries needed to link with C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -v -fPIC -O3 conftest.o -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -v -fPIC -O3 conftest.o -ldl sh: mpicc for 1.2.6 (release) of : 2004/08/04 11:10:38 Possible ERROR while running linker: ld \ /usr/lib/crt1.o \ /usr/lib/crti.o \ /opt/intel/compiler70/ia32/lib/crtxi.o \ -dynamic-linker \ /lib/ld-linux.so.2 \ -u \ ___get_intrinsics \ -o \ conftest \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/mpich/myrinet/intel/lib \ conftest.o \ -ldl \ -lmpich \ -L \ /opt/gm/lib \ -lgm \ -lpthread \ -Qy \ -L/opt/intel/compiler70/ia32/lib \ -L/usr/lib \ -Bstatic \ -limf \ -Bdynamic \ -lm \ -Bstatic \ -lirc \ -Bstatic \ -lcprts \ -Bdynamic \ -lcxa \ -Bstatic \ -lunwind \ -Bdynamic \ -lc \ /opt/intel/compiler70/ia32/lib/crtxn.o \ /usr/lib/crtn.o output: mpicc for 1.2.6 (release) of : 2004/08/04 11:10:38 error message = {ld \ /usr/lib/crt1.o \ /usr/lib/crti.o \ /opt/intel/compiler70/ia32/lib/crtxi.o \ -dynamic-linker \ /lib/ld-linux.so.2 \ -u \ ___get_intrinsics \ -o \ conftest \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/mpich/myrinet/intel/lib \ conftest.o \ -ldl \ -lmpich \ -L \ /opt/gm/lib \ -lgm \ -lpthread \ -Qy \ -L/opt/intel/compiler70/ia32/lib \ -L/usr/lib \ -Bstatic \ -limf \ -Bdynamic \ -lm \ -Bstatic \ -lirc \ -Bstatic \ -lcprts \ -Bdynamic \ -lcxa \ -Bstatic \ -lunwind \ -Bdynamic \ -lc \ /opt/intel/compiler70/ia32/lib/crtxn.o \ /usr/lib/crtn.o } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -v -fPIC -O3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Checking arg mpicc compilers: Unknown arg mpicc compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.2.6 compilers: Unknown arg 1.2.6 compilers: Checking arg (release) compilers: Unknown arg (release) compilers: Checking arg of compilers: Unknown arg of compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg 2004/08/04 compilers: Unknown arg 2004/08/04 compilers: Checking arg 11:10:38 compilers: Unknown arg 11:10:38 compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /usr/lib/crt1.o compilers: Unknown arg /usr/lib/crt1.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /usr/lib/crti.o compilers: Unknown arg /usr/lib/crti.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /opt/intel/compiler70/ia32/lib/crtxi.o compilers: Unknown arg /opt/intel/compiler70/ia32/lib/crtxi.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /lib/ld-linux.so.2 compilers: Unknown arg /lib/ld-linux.so.2 compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -u compilers: Unknown arg -u compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg ___get_intrinsics compilers: Unknown arg ___get_intrinsics compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -rpath compilers: Found -rpath library: \ compilers: Checking arg /opt/intel/compiler70/ia32/lib compilers: Unknown arg /opt/intel/compiler70/ia32/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L compilers: Found -L \ compilers: Checking arg /opt/mpich/myrinet/intel/lib compilers: Unknown arg /opt/mpich/myrinet/intel/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -ldl compilers: Found library or library directory: -ldl compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lmpich compilers: Found library or library directory: -lmpich compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L compilers: Found -L \ compilers: Checking arg /opt/gm/lib compilers: Unknown arg /opt/gm/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lgm compilers: Found library or library directory: -lgm compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lpthread compilers: Found library or library directory: -lpthread compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Qy compilers: Unknown arg -Qy compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L/opt/intel/compiler70/ia32/lib compilers: Found library or library directory: -L/opt/intel/compiler70/ia32/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L/usr/lib compilers: Found library or library directory: -L/usr/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -limf compilers: Found library or library directory: -limf compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lm compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lirc compilers: Found library or library directory: -lirc compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lcprts compilers: Found library or library directory: -lcprts compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lcxa compilers: Found library or library directory: -lcxa compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lunwind compilers: Found library or library directory: -lunwind compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lc compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /opt/intel/compiler70/ia32/lib/crtxn.o compilers: Unknown arg /opt/intel/compiler70/ia32/lib/crtxn.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /usr/lib/crtn.o compilers: Unknown arg /usr/lib/crtn.o compilers: Libraries needed to link C code with another linker: ['-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-ldl', '-lmpich', '-Wl,-rpath,\\', '-L\\', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind'] compilers: Check that C libraries can be used from Fortran Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language FC sh: /opt/mpich/myrinet/intel/bin/mpicxx --help Executing: /opt/mpich/myrinet/intel/bin/mpicxx --help sh: Intel(R) C++ Compiler Help ========================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .i), assembly (.s), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 enable optimizations (DEFAULT) -O2 same as -O1 -O3 enable -O2 plus more aggres... ... ndard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -static-libcxa link Intel libcxa C++ library statically -shared-libcxa link Intel libcxa C++ library dynamically, overrides the default -u pretend the is undefined -Xlinker pass directly to the linker for processing -Wl,[,,...] pass options o1, o2, etc. to the linker for processing Copyright (C) 1985-2003, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. ================================================================================ TEST checkRestrict from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:126) TESTING: checkRestrict from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:126) Check for the C/CXX restrict keyword Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc sh: Possible ERROR while running compiler: ret = 512 error message = {conftest.cc(5): error: expected a ";" float * restrict x;; ^ compilation aborted for conftest.cc (code 2) } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc sh: compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:286) TESTING: checkCxxNamespace from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:286) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc sh: sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.cc sh: Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:261) TESTING: checkCxxOptionalExtensions from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:261) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -fPIC conftest.c sh: Possible ERROR while running compiler: ret = 512 error message = {conftest.c(5): error: identifier "class" is undefined class somename { int i; };; ^ conftest.c(5): error: expected a ";" class somename { int i; };; ^ compilation aborted for conftest.c (code 2) } Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to conftest.c(5): error: identifier "class" is undefined class somename { int i; };; ^ conftest.c(5): error: expected a ";" class somename { int i; };; ^ compilation aborted for conftest.c (code 2) PETSc Error: No output file produced sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -+ -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -+ -fPIC conftest.c sh: Possible ERROR while running compiler: ret = 512 error message = {icc: Command line warning: ignoring unknown option '-+' conftest.c(5): error: identifier "class" is undefined class somename { int i; };; ^ conftest.c(5): error: expected a ";" class somename { int i; };; ^ compilation aborted for conftest.c (code 2) } Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -+ due to nonzero status from link Rejecting compiler flag -+ due to icc: Command line warning: ignoring unknown option '-+' conftest.c(5): error: identifier "class" is undefined class somename { int i; };; ^ conftest.c(5): error: expected a ";" class somename { int i; };; ^ compilation aborted for conftest.c (code 2) PETSc Error: No output file produced sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -x cxx -tlocal -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -x cxx -tlocal -fPIC conftest.c sh: Possible ERROR while running compiler: ret = 512 error message = {icc: Command line warning: ignoring option '-x'; argument required icc: Command line warning: ignoring unknown option '-tlocal' conftest.c(5): error: identifier "class" is undefined class somename { int i; };; ^ conftest.c(5): error: expected a ";" class somename { int i; };; ^ compilation aborted for conftest.c (code 2) } Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -x cxx -tlocal due to nonzero status from link Rejecting compiler flag -x cxx -tlocal due to icc: Command line warning: ignoring option '-x'; argument required icc: Command line warning: ignoring unknown option '-tlocal' conftest.c(5): error: identifier "class" is undefined class somename { int i; };; ^ conftest.c(5): error: expected a ";" class somename { int i; };; ^ compilation aborted for conftest.c (code 2) PETSc Error: No output file produced sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.c sh: Added Cxx compiler flag -Kc++ Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:111) TESTING: checkCxxStaticInline from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:111) Check for C++ keyword: static inline Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:301) TESTING: checkCxxLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:301) Determines the libraries needed to link with C++ Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -v -O3 -Kc++ conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -v -O3 -Kc++ conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: mpiCC for 1.2.6 (release) of : 2004/08/04 11:10:38 Possible ERROR while running linker: ld \ /usr/lib/crt1.o \ /usr/lib/crti.o \ /opt/intel/compiler70/ia32/lib/crtxi.o \ -dynamic-linker \ /lib/ld-linux.so.2 \ -u \ ___get_intrinsics \ -o \ conftest \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/mpich/myrinet/intel/lib \ conftest.o \ -rpath \ -rpath \ -L \ -ldl \ -lmpich \ -rpath \ -L \ -lgm \ -lpthread \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/intel/compiler70/ia32/lib \ -rpath \ /usr/lib \ -L \ /usr/lib \ -limf \ -lirc \ -lcprts \ -lcxa \ -lunwind \ -ldl \ -lpmpich++ \ -lmpich \ -L \ /opt/gm/lib \ -lgm \ -lpthread \ -Qy \ -L/opt/intel/compiler70/ia32/lib \ -L/usr/lib \ -Bstatic \ -limf \ -Bdynamic \ -lm \ -Bstatic \ -lirc \ -Bstatic \ -lcprts \ -Bdynamic \ -lcxa \ -Bstatic \ -lunwind \ -Bdynamic \ -lc \ /opt/intel/compiler70/ia32/lib/crtxn.o \ /usr/lib/crtn.o output: mpiCC for 1.2.6 (release) of : 2004/08/04 11:10:38 error message = {ld \ /usr/lib/crt1.o \ /usr/lib/crti.o \ /opt/intel/compiler70/ia32/lib/crtxi.o \ -dynamic-linker \ /lib/ld-linux.so.2 \ -u \ ___get_intrinsics \ -o \ conftest \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/mpich/myrinet/intel/lib \ conftest.o \ -rpath \ -rpath \ -L \ -ldl \ -lmpich \ -rpath \ -L \ -lgm \ -lpthread \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/intel/compiler70/ia32/lib \ -rpath \ /usr/lib \ -L \ /usr/lib \ -limf \ -lirc \ -lcprts \ -lcxa \ -lunwind \ -ldl \ -lpmpich++ \ -lmpich \ -L \ /opt/gm/lib \ -lgm \ -lpthread \ -Qy \ -L/opt/intel/compiler70/ia32/lib \ -L/usr/lib \ -Bstatic \ -limf \ -Bdynamic \ -lm \ -Bstatic \ -lirc \ -Bstatic \ -lcprts \ -Bdynamic \ -lcxa \ -Bstatic \ -lunwind \ -Bdynamic \ -lc \ /opt/intel/compiler70/ia32/lib/crtxn.o \ /usr/lib/crtn.o } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -v -O3 -Kc++ conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx compilers: Checking arg mpiCC compilers: Unknown arg mpiCC compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.2.6 compilers: Unknown arg 1.2.6 compilers: Checking arg (release) compilers: Unknown arg (release) compilers: Checking arg of compilers: Unknown arg of compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg 2004/08/04 compilers: Unknown arg 2004/08/04 compilers: Checking arg 11:10:38 compilers: Unknown arg 11:10:38 compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /usr/lib/crt1.o compilers: Unknown arg /usr/lib/crt1.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /usr/lib/crti.o compilers: Unknown arg /usr/lib/crti.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /opt/intel/compiler70/ia32/lib/crtxi.o compilers: Unknown arg /opt/intel/compiler70/ia32/lib/crtxi.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /lib/ld-linux.so.2 compilers: Unknown arg /lib/ld-linux.so.2 compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -u compilers: Unknown arg -u compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg ___get_intrinsics compilers: Unknown arg ___get_intrinsics compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -rpath compilers: Found -rpath library: \ compilers: Checking arg /opt/intel/compiler70/ia32/lib compilers: Unknown arg /opt/intel/compiler70/ia32/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L compilers: Found -L \ compilers: Checking arg /opt/mpich/myrinet/intel/lib compilers: Unknown arg /opt/mpich/myrinet/intel/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -rpath compilers: Found -rpath library: \ compilers: Checking arg -rpath compilers: Found -rpath library: \ compilers: Checking arg -L compilers: Found -L \ compilers: Checking arg -ldl compilers: Found library or library directory: -ldl Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lmpich compilers: Found library or library directory: -lmpich Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -rpath compilers: Found -rpath library: \ compilers: Checking arg -L compilers: Found -L \ compilers: Checking arg -lgm compilers: Found library or library directory: -lgm Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lpthread compilers: Found library or library directory: -lpthread Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -rpath compilers: Found -rpath library: \ compilers: Checking arg /opt/intel/compiler70/ia32/lib compilers: Unknown arg /opt/intel/compiler70/ia32/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L compilers: Found -L \ compilers: Checking arg /opt/intel/compiler70/ia32/lib compilers: Unknown arg /opt/intel/compiler70/ia32/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -rpath compilers: Found -rpath library: \ compilers: Checking arg /usr/lib compilers: Unknown arg /usr/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L compilers: Found -L \ compilers: Checking arg /usr/lib compilers: Unknown arg /usr/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -limf compilers: Found library or library directory: -limf Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lirc compilers: Found library or library directory: -lirc Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lcprts compilers: Found library or library directory: -lcprts Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lcxa compilers: Found library or library directory: -lcxa Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lunwind compilers: Found library or library directory: -lunwind Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -ldl compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lpmpich++ compilers: Found library or library directory: -lpmpich++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lmpich compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L compilers: Found -L \ compilers: Checking arg /opt/gm/lib compilers: Unknown arg /opt/gm/lib compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lgm compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lpthread compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Qy compilers: Unknown arg -Qy compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L/opt/intel/compiler70/ia32/lib compilers: Found library or library directory: -L/opt/intel/compiler70/ia32/lib Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -L/usr/lib compilers: Found library or library directory: -L/usr/lib Library already in C list so skipping in C++ compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -limf compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lm compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lirc compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lcprts compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lcxa compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lunwind compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg -lc compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /opt/intel/compiler70/ia32/lib/crtxn.o compilers: Unknown arg /opt/intel/compiler70/ia32/lib/crtxn.o compilers: Checking arg \ compilers: Unknown arg \ compilers: Checking arg /usr/lib/crtn.o compilers: Unknown arg /usr/lib/crtn.o compilers: Libraries needed to link Cxx code with another linker: ['-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-lpmpich++', '-Wl,-rpath,\\', '-L\\'] compilers: Check that Cxx libraries can be used from C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: unrecognized option '-Wl,-rpath,' ld: use the --help option for usage information output: ret = 256 error message = {ld: unrecognized option '-Wl,-rpath,' ld: use the --help option for usage information } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Cxx libraries cannot directly be used from C compilers: Error message from compiling {Cannot compile/link C with /opt/mpich/myrinet/intel/bin/mpicc.} compilers: Check that Cxx libraries can be used from Fortran Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: unrecognized option '-Wl,-rpath,' ld: use the --help option for usage information output: ret = 256 error message = {ld: unrecognized option '-Wl,-rpath,' ld: use the --help option for usage information } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: program main end Popping language FC compilers: Cxx libraries cannot directly be used from Fortran compilers: Error message from compiling {Cannot compile/link FC with /opt/mpich/myrinet/intel/bin/mpicc.} ================================================================================ TEST checkFortranTypeSizes from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:405) TESTING: checkFortranTypeSizes from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:405) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN real*8 variable ^ Warning 2 at (2:conftest.F) : Type size specifiers are an extension to standard Fortran 95 4 Lines Compiled } Source: program main real*8 variable end sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main real*8 variable end compilers: Looks like ifc compiler, adding -w90 -w flags to avoid warnings about real*8 etc Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:464) TESTING: checkFortranNameMangling from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:464) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Popping language C Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 5 Lines Compiled } Source: program main call d1chk() end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o confc.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o confc.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:497) TESTING: checkFortranNameManglingDouble from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:497) Checks if symbols containing and underscore append and extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Popping language C Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 5 Lines Compiled } Source: program main call d1_chk() end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o confc.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o confc.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1c): In function `main': : undefined reference to `d1_chk_' output: ret = 256 error message = {conftest.o(.text+0x1c): In function `main': : undefined reference to `d1_chk_' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o confc.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: program main call d1_chk() end Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:507) TESTING: checkFortranPreprocessor from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:507) Determine if Fortran handles preprocessing properly Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w -DPTesting conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w -DPTesting conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 7 Lines Compiled } Source: program main #define dummy dummy #ifndef PTesting fooey #endif end Added FC compiler flag Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:529) TESTING: checkFortranLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:529) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -V Executing: /opt/mpich/myrinet/intel/bin/mpif90 -V sh: GNU ld version 2.14.90.0.4 20030523 Supported emulations: elf_i386 i386linux sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 4 Lines Compiled } Source: program main end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -v -I. -fPIC -O -w90 -w conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -v -I. -fPIC -O -w90 -w conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: mpif90 for 1.2.6 (release) of : 2004/08/04 11:10:38 Possible ERROR while running linker: ld \ /usr/lib/crt1.o \ /usr/lib/crti.o \ /opt/intel/compiler70/ia32/lib/crtxi.o \ -dynamic-linker \ /lib/ld-linux.so.2 \ -u \ ___get_intrinsics \ -o \ conftest \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/mpich/myrinet/intel/lib \ conftest.o \ -rpath \ -rpath \ -L \ -ldl \ -lmpich \ -rpath \ -L \ -lgm \ -lpthread \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/intel/compiler70/ia32/lib \ -rpath \ /usr/lib \ -L \ /usr/lib \ -limf \ -lirc \ -lcprts \ -lcxa \ -lunwind \ -ldl \ -lmpichf90nc \ -lmpich \ -L \ /opt/gm/lib \ -lgm \ -lpthread \ -lPEPCF90 \ -Qy \ -L/opt/intel/compiler70/ia32/lib \ -L/usr/lib \ -Bstatic \ -lintrins \ -lIEPCF90 \ -lF90 \ -lintrins \ -limf \ -Bdynamic \ -lm \ -Bstatic \ -lirc \ -Bdynamic \ -lcxa \ -Bstatic \ -lunwind \ -Bdynamic \ -lc \ /opt/intel/compiler70/ia32/lib/crtxn.o \ /usr/lib/crtn.o output: mpif90 for 1.2.6 (release) of : 2004/08/04 11:10:38 error message = {ld \ /usr/lib/crt1.o \ /usr/lib/crti.o \ /opt/intel/compiler70/ia32/lib/crtxi.o \ -dynamic-linker \ /lib/ld-linux.so.2 \ -u \ ___get_intrinsics \ -o \ conftest \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/mpich/myrinet/intel/lib \ conftest.o \ -rpath \ -rpath \ -L \ -ldl \ -lmpich \ -rpath \ -L \ -lgm \ -lpthread \ -rpath \ /opt/intel/compiler70/ia32/lib \ -L \ /opt/intel/compiler70/ia32/lib \ -rpath \ /usr/lib \ -L \ /usr/lib \ -limf \ -lirc \ -lcprts \ -lcxa \ -lunwind \ -ldl \ -lmpichf90nc \ -lmpich \ -L \ /opt/gm/lib \ -lgm \ -lpthread \ -lPEPCF90 \ -Qy \ -L/opt/intel/compiler70/ia32/lib \ -L/usr/lib \ -Bstatic \ -lintrins \ -lIEPCF90 \ -lF90 \ -lintrins \ -limf \ -Bdynamic \ -lm \ -Bstatic \ -lirc \ -Bdynamic \ -lcxa \ -Bstatic \ -lunwind \ -Bdynamic \ -lc \ /opt/intel/compiler70/ia32/lib/crtxn.o \ /usr/lib/crtn.o } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -v -I. -fPIC -O -w90 -w conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: program main end Popping language FC compilers: Checking arg mpif90 compilers: Unknown arg mpif90 compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.2.6 compilers: Unknown arg 1.2.6 compilers: Checking arg (release) compilers: Unknown arg (release) compilers: Checking arg of compilers: Unknown arg of compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg 2004/08/04 compilers: Unknown arg 2004/08/04 compilers: Checking arg 11:10:38 compilers: Unknown arg 11:10:38 compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg /usr/lib/crt1.o compilers: Unknown arg /usr/lib/crt1.o compilers: Checking arg /usr/lib/crti.o compilers: Unknown arg /usr/lib/crti.o compilers: Checking arg /opt/intel/compiler70/ia32/lib/crtxi.o compilers: Unknown arg /opt/intel/compiler70/ia32/lib/crtxi.o compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib/ld-linux.so.2 compilers: Unknown arg /lib/ld-linux.so.2 compilers: Checking arg -u compilers: Unknown arg -u compilers: Checking arg ___get_intrinsics compilers: Unknown arg ___get_intrinsics compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg -rpath compilers: Found -rpath library: /opt/intel/compiler70/ia32/lib compilers: Checking arg -L compilers: Found canonical library: -L/opt/mpich/myrinet/intel/lib compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: -rpath compilers: Checking arg -L compilers: Found canonical library: -L-ldl compilers: Checking arg -lmpich compilers: Found library or library directory: -lmpich compilers: Checking arg -rpath compilers: Found -rpath library: -L compilers: Checking arg -lgm compilers: Found library or library directory: -lgm compilers: Checking arg -lpthread compilers: Found library or library directory: -lpthread compilers: Checking arg -rpath compilers: Found -rpath library: /opt/intel/compiler70/ia32/lib compilers: Checking arg -L compilers: Found canonical library: -L/opt/intel/compiler70/ia32/lib compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib compilers: Checking arg -L compilers: Found canonical library: -L/usr/lib compilers: Checking arg -limf compilers: Found library or library directory: -limf compilers: Checking arg -lirc compilers: Found library or library directory: -lirc compilers: Checking arg -lcprts compilers: Found library or library directory: -lcprts compilers: Checking arg -lcxa compilers: Found library or library directory: -lcxa compilers: Checking arg -lunwind compilers: Found library or library directory: -lunwind compilers: Checking arg -ldl compilers: Found library or library directory: -ldl compilers: Checking arg -lmpichf90nc compilers: Found library or library directory: -lmpichf90nc compilers: Checking arg -lmpich compilers: Checking arg -L compilers: Found canonical library: -L/opt/gm/lib compilers: Checking arg -lgm compilers: Checking arg -lpthread compilers: Checking arg -lPEPCF90 compilers: Found library or library directory: -lPEPCF90 compilers: Checking arg -Qy compilers: Unknown arg -Qy compilers: Checking arg -L/opt/intel/compiler70/ia32/lib compilers: Found library or library directory: -L/opt/intel/compiler70/ia32/lib compilers: Checking arg -L/usr/lib compilers: Found library or library directory: -L/usr/lib compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lintrins compilers: Found library or library directory: -lintrins compilers: Checking arg -lIEPCF90 compilers: Found library or library directory: -lIEPCF90 compilers: Checking arg -lF90 compilers: Found library or library directory: -lF90 compilers: Checking arg -lintrins compilers: Checking arg -limf compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lm compilers: Found library or library directory: -lm compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lirc compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lcxa compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lunwind compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lc compilers: Checking arg /opt/intel/compiler70/ia32/lib/crtxn.o compilers: Unknown arg /opt/intel/compiler70/ia32/lib/crtxn.o compilers: Checking arg /usr/lib/crtn.o compilers: Unknown arg /usr/lib/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C compilers: Check for Intel PEPCF90 library Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C compilers: Intel PEPCF90 library exists compilers: Check that Fortran libraries can be used from C++ Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -O3 -Kc++ conftest.o -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -O3 -Kc++ conftest.o -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -O3 -Kc++ conftest.o -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -O3 -Kc++ conftest.o -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language Cxx compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:786) TESTING: checkFortranLinkingCxx from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:786) Check that Fortran can be linked against C++ Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: Popping language Cxx Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: Popping language Cxx Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 5 Lines Compiled } Source: program main call d1chk() end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o cxxobj.o confc.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o cxxobj.o confc.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:821) TESTING: checkFortran90 from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:821) Determine whether the Fortran compiler handles F90 Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 7 Lines Compiled } Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran90Interface from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:868) TESTING: checkFortran90Interface from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:868) Check for custom F90 interfaces, such as that provided by PETSc Defined "HAVE_F90_H" to ""src/sys/f90/f90_intel8.h"" Defined "HAVE_F90_C" to ""src/sys/f90/f90_intel8.c"" ================================================================================ TEST setupFrameworkCompilers from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:932) TESTING: setupFrameworkCompilers from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:932) ================================================================================ TEST configureLibrary from PETSc.packages.Mathematica(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/Mathematica.py:15) TESTING: configureLibrary from PETSc.packages.Mathematica(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/Mathematica.py:15) Find a Mathematica installation and check if it can work with PETSc ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/fortranCPP.py:26) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/fortranCPP.py:26) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:60) TESTING: checkStdC from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:60) sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/string.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... 2, size_t __n) ; extern char *index (__const char *__s, int __c) ; extern char *rindex (__const char *__s, int __c) ; extern int ffs (int __i) __attribute__ ((__const__)); #line 285 "/usr/include/string.h" extern int strcasecmp (__const char *__s1, __const char *__s2) ; extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) ; #line 305 "/usr/include/string.h" extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) ; #line 348 "/usr/include/string.h" #line 378 "/usr/include/string.h" #line 4 "conftest.c" sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/stdlib.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; #line 870 "/usr/include/stdlib.h" #line 901 "/usr/include/stdlib.h" #line 911 "/usr/include/stdlib.h" extern int getloadavg (double __loadavg[], int __nelem) ; #line 4 "conftest.c" sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:93) TESTING: checkStat from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:93) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line... ... extern __inline__ int stat (__const char *__path, struct stat *__statbuf) { return __xstat (3, __path, __statbuf); } extern __inline__ int lstat (__const char *__path, struct stat *__statbuf) { return __lxstat (3, __path, __statbuf); } extern __inline__ int fstat (int __fd, struct stat *__statbuf) { return __fxstat (3, __fd, __statbuf); } extern __inline__ int mknod (__const char *__path, __mode_t __mode, __dev_t __dev) { return __xmknod (1, __path, __mode, &__dev); } #line 392 "/opt/intel/compiler70/ia32/substitute_headers/sys/stat.h" #line 6 "conftest.c" ================================================================================ TEST checkSysWait from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:128) TESTING: checkSysWait from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:128) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:150) TESTING: checkTime from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:150) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/time.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/includ... ... ec *__tp) ; #line 350 "/usr/include/time.h" extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) ; extern int timer_delete (timer_t __timerid) ; extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) ; extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) ; extern int timer_getoverrun (timer_t __timerid) ; #line 397 "/usr/include/time.h" #line 412 "/usr/include/time.h" #line 4 "conftest.c" Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/time.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... ; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) ; extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) ; extern int utimes (__const char *__file, __const struct timeval __tvp[2]) ; extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) ; extern int futimes (int __fd, __const struct timeval __tvp[2]) ; #line 180 "/usr/include/sys/time.h" #line 4 "conftest.c" Defined "HAVE_SYS_TIME_H" to "1" sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "dos.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "dos.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/endian.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/includ... ... s.h" #line 198 "/usr/include/sys/cdefs.h" #line 228 "/usr/include/sys/cdefs.h" #line 259 "/usr/include/sys/cdefs.h" #line 32 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 43 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 58 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 296 "/usr/include/features.h" #line 1 "/usr/include/gnu/stubs.h" #line 319 "/usr/include/features.h" #line 23 "/usr/include/endian.h" #line 1 "/usr/include/bits/endian.h" #line 38 "/usr/include/endian.h" #line 51 "/usr/include/endian.h" #line 4 "conftest.c" Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/fcntl.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/inclu... ... 170 "/usr/include/bits/fcntl.h" #line 180 "/usr/include/bits/fcntl.h" extern ssize_t readahead (int __fd, __off64_t __offset, size_t __count) ; #line 34 "/usr/include/fcntl.h" #line 50 "/usr/include/fcntl.h" extern int fcntl (int __fd, int __cmd, ...); extern int open (__const char *__file, int __oflag, ...); #line 83 "/usr/include/fcntl.h" extern int creat (__const char *__file, __mode_t __mode); #line 102 "/usr/include/fcntl.h" extern int lockf (int __fd, int __cmd, __off_t __len); #line 131 "/usr/include/fcntl.h" #line 172 "/usr/include/fcntl.h" #line 4 "conftest.c" Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/opt/intel/compiler70/ia32/include/float.h" #line 30 "/opt/intel/compiler70/ia32/include/float.h" #line 42 "/opt/intel/compiler70/ia32/include/float.h" #line 54 "/opt/intel/compiler70/ia32/include/float.h" #line 4 "conftest.c" Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "io.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "io.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/opt/intel/compiler70/ia32/include/limits.h" #line 1 "/opt/intel/compiler70/ia32/include/yvals.h" #line 1 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 1 "/opt/intel/compiler70/ia32/include/xarg.h" typedef char * va_list; typedef va_list __gnuc_va_list; #line 114 "/opt/intel/compiler70/ia32/include/xarg.h" #line 30 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 43 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 8 "/opt/intel/compiler70/ia32/inc... ... s/local_lim.h" #line 131 "/usr/include/bits/posix1_lim.h" #line 145 "/usr/include/limits.h" #line 1 "/usr/include/bits/posix2_lim.h" #line 87 "/usr/include/bits/posix2_lim.h" #line 149 "/usr/include/limits.h" #line 24 "/opt/intel/compiler70/ia32/include/limits.h" #line 47 "/opt/intel/compiler70/ia32/include/limits.h" #line 81 "/opt/intel/compiler70/ia32/include/limits.h" #line 96 "/opt/intel/compiler70/ia32/include/limits.h" #line 119 "/opt/intel/compiler70/ia32/include/limits.h" #line 4 "conftest.c" Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/malloc.h" #line 1 "/opt/intel/compiler70/ia32/include/stddef.h" #line 1 "/opt/intel/compiler70/ia32/include/yvals.h" #line 1 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 1 "/opt/intel/compiler70/ia32/include/xarg.h" typedef char * va_list; typedef va_list __gnuc_va_list; #line 114 "/opt/intel/compiler70/ia32/include/xarg.h" #line 30 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 43 "/opt/intel/compiler70/ia32/include/stdarg.h" #line... ... _t malloc_usable_size (void * __ptr); extern void malloc_stats (void); extern void * malloc_get_state (void); extern int malloc_set_state (void * __ptr); extern void (*__malloc_initialize_hook) (void); extern void (*__free_hook) (void * __ptr, const void *); extern void * (*__malloc_hook) (size_t __size, const void *); extern void * (*__realloc_hook) (void * __ptr, size_t __size, const void *); extern void * (*__memalign_hook) (size_t __alignment, size_t __size, const void *); extern void (*__after_morecore_hook) (void); extern void __malloc_check_init (void); #line 4 "conftest.c" Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/pwd.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/include... ... uid_t __uid, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwnam_r (__const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); #line 183 "/usr/include/pwd.h" #line 4 "conftest.c" Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/search.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/includ... ... ompar); extern void *tdelete (__const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value, int __level); extern void twalk (__const void *__root, __action_fn_t __action); #line 161 "/usr/include/search.h" extern void *lfind (__const void *__key, __const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (__const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); #line 4 "conftest.c" Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/strings.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/inc... ... typedef _Wchart wchar_t; #line 30 "/usr/include/strings.h" extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) ; extern void bcopy (__const void *__src, void *__dest, size_t __n) ; extern void bzero (void *__s, size_t __n) ; extern int ffs (int __i) __attribute__ ((const)); extern char *index (__const char *__s, int __c) ; extern char *rindex (__const char *__s, int __c) ; extern int strcasecmp (__const char *__s1, __const char *__s2) ; extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) ; #line 4 "conftest.c" Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/unistd.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... ibute__ ((__const__)); extern int truncate (__const char *__file, __off_t __length) ; #line 890 "/usr/include/unistd.h" extern int ftruncate (int __fd, __off_t __length) ; #line 905 "/usr/include/unistd.h" extern int getdtablesize (void) ; extern int brk (void *__addr) ; extern void *sbrk (intptr_t __delta) ; extern long int syscall (long int __sysno, ...) ; extern int lockf (int __fd, int __cmd, __off_t __len); #line 975 "/usr/include/unistd.h" #line 989 "/usr/include/unistd.h" extern int fdatasync (int __fildes) ; #line 1015 "/usr/include/unistd.h" #line 4 "conftest.c" Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "machine/endian.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "machine/endian.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/param.h" #line 1 "/opt/intel/compiler70/ia32/include/limits.h" #line 1 "/opt/intel/compiler70/ia32/include/yvals.h" #line 1 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 1 "/opt/intel/compiler70/ia32/include/xarg.h" typedef char * va_list; typedef va_list __gnuc_va_list; #line 114 "/opt/intel/compiler70/ia32/include/xarg.h" #line 30 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 43 "/opt/intel/compiler70/ia32/include/stdarg.h" #l... ... long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) ; #line 61 "/usr/include/sys/sysmacros.h" #line 15 "/opt/intel/compiler70/ia32/include/sys/sysmacros.h" #line 25 "/opt/intel/compiler70/ia32/include/sys/sysmacros.h" #line 213 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; #line 249 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" #line 43 "/usr/include/sys/param.h" #line 62 "/usr/include/sys/param.h" #line 4 "conftest.c" Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/procfs.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/... ... gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned short int pr_uid; unsigned short int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; #line 4 "conftest.c" Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/resource.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/... ... nt __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) ; #line 66 "/usr/include/sys/resource.h" extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) ; #line 86 "/usr/include/sys/resource.h" extern int getrusage (__rusage_who_t __who, struct rusage *__usage) ; extern int getpriority (__priority_which_t __which, id_t __who) ; extern int setpriority (__priority_which_t __which, id_t __who, int __prio) ; #line 4 "conftest.c" Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "sys/systeminfo.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "sys/systeminfo.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/times.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/i... ... 147 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t; #line 144 "/opt/intel/compiler70/ia32/substitute_headers/bits/types.h" #line 57 "/usr/include/time.h" typedef __clock_t clock_t; #line 84 "/usr/include/time.h" #line 96 "/usr/include/time.h" #line 108 "/usr/include/time.h" #line 126 "/usr/include/time.h" #line 416 "/usr/include/time.h" #line 30 "/usr/include/sys/times.h" struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) ; #line 4 "conftest.c" Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/utsname.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32... ... #line 58 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 296 "/usr/include/features.h" #line 1 "/usr/include/gnu/stubs.h" #line 319 "/usr/include/features.h" #line 27 "/usr/include/sys/utsname.h" #line 1 "/usr/include/bits/utsname.h" #line 31 "/usr/include/sys/utsname.h" #line 47 "/usr/include/sys/utsname.h" struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; extern int uname (struct utsname *__name) ; #line 4 "conftest.c" Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/string.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... 2, size_t __n) ; extern char *index (__const char *__s, int __c) ; extern char *rindex (__const char *__s, int __c) ; extern int ffs (int __i) __attribute__ ((__const__)); #line 285 "/usr/include/string.h" extern int strcasecmp (__const char *__s1, __const char *__s2) ; extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) ; #line 305 "/usr/include/string.h" extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) ; #line 348 "/usr/include/string.h" #line 378 "/usr/include/string.h" #line 4 "conftest.c" Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/stdlib.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; #line 870 "/usr/include/stdlib.h" #line 901 "/usr/include/stdlib.h" #line 911 "/usr/include/stdlib.h" extern int getloadavg (double __loadavg[], int __nelem) ; #line 4 "conftest.c" Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/socket.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/in... ... extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) ; extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) ; extern int listen (int __fd, int __n) ; extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern int shutdown (int __fd, int __how) ; extern int isfdtype (int __fd, int __fdtype) ; #line 4 "conftest.c" Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/wait.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/in... ... int __options); #line 1 "/usr/include/bits/siginfo.h" #line 1 "/usr/include/bits/wordsize.h" #line 26 "/usr/include/bits/siginfo.h" #line 39 "/usr/include/bits/siginfo.h" #line 259 "/usr/include/bits/siginfo.h" #line 140 "/usr/include/sys/wait.h" extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (void * __stat_loc, int __options, struct rusage * __usage) ; struct rusage; extern __pid_t wait4 (__pid_t __pid, void * __stat_loc, int __options, struct rusage *__usage) ; #line 4 "conftest.c" Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/netinet/in.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/in... ... 32 (unsigned int __bsx) { return ((((__bsx) & 0xff000000) >> 24) | (((__bsx) & 0x00ff0000) >> 8) | (((__bsx) & 0x0000ff00) << 8) | (((__bsx) & 0x000000ff) << 24)); } #line 132 "/usr/include/bits/byteswap.h" #line 274 "/usr/include/netinet/in.h" #line 295 "/usr/include/netinet/in.h" extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) ; extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) ; struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; #line 386 "/usr/include/netinet/in.h" #line 4 "conftest.c" Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/netdb.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/in... ... e/netdb.h" #line 596 "/usr/include/netdb.h" extern int getaddrinfo (__const char *__restrict __name, __const char *__restrict __service, __const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) ; extern __const char *gai_strerror (int __ecode) ; extern int getnameinfo (__const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, unsigned int __flags); #line 661 "/usr/include/netdb.h" #line 4 "conftest.c" Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "Direct.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "Direct.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/time.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/includ... ... ec *__tp) ; #line 350 "/usr/include/time.h" extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) ; extern int timer_delete (timer_t __timerid) ; extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) ; extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) ; extern int timer_getoverrun (timer_t __timerid) ; #line 397 "/usr/include/time.h" #line 412 "/usr/include/time.h" #line 4 "conftest.c" Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "Ws2tcpip.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "Ws2tcpip.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line... ... nt gnu_dev_minor (unsigned long long int __dev) ; extern __inline unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) ; #line 61 "/usr/include/sys/sysmacros.h" #line 15 "/opt/intel/compiler70/ia32/include/sys/sysmacros.h" #line 25 "/opt/intel/compiler70/ia32/include/sys/sysmacros.h" #line 213 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; #line 249 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" #line 4 "conftest.c" Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "WindowsX.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "WindowsX.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "cxxabi.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "cxxabi.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "dos.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "dos.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/endian.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/includ... ... s.h" #line 198 "/usr/include/sys/cdefs.h" #line 228 "/usr/include/sys/cdefs.h" #line 259 "/usr/include/sys/cdefs.h" #line 32 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 43 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 58 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 296 "/usr/include/features.h" #line 1 "/usr/include/gnu/stubs.h" #line 319 "/usr/include/features.h" #line 23 "/usr/include/endian.h" #line 1 "/usr/include/bits/endian.h" #line 38 "/usr/include/endian.h" #line 51 "/usr/include/endian.h" #line 4 "conftest.c" Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/fcntl.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/inclu... ... 170 "/usr/include/bits/fcntl.h" #line 180 "/usr/include/bits/fcntl.h" extern ssize_t readahead (int __fd, __off64_t __offset, size_t __count) ; #line 34 "/usr/include/fcntl.h" #line 50 "/usr/include/fcntl.h" extern int fcntl (int __fd, int __cmd, ...); extern int open (__const char *__file, int __oflag, ...); #line 83 "/usr/include/fcntl.h" extern int creat (__const char *__file, __mode_t __mode); #line 102 "/usr/include/fcntl.h" extern int lockf (int __fd, int __cmd, __off_t __len); #line 131 "/usr/include/fcntl.h" #line 172 "/usr/include/fcntl.h" #line 4 "conftest.c" Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/opt/intel/compiler70/ia32/include/float.h" #line 30 "/opt/intel/compiler70/ia32/include/float.h" #line 42 "/opt/intel/compiler70/ia32/include/float.h" #line 54 "/opt/intel/compiler70/ia32/include/float.h" #line 4 "conftest.c" Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "io.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "io.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/opt/intel/compiler70/ia32/include/limits.h" #line 1 "/opt/intel/compiler70/ia32/include/yvals.h" #line 1 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 1 "/opt/intel/compiler70/ia32/include/xarg.h" typedef char * va_list; typedef va_list __gnuc_va_list; #line 114 "/opt/intel/compiler70/ia32/include/xarg.h" #line 30 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 43 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 8 "/opt/intel/compiler70/ia32/inc... ... s/local_lim.h" #line 131 "/usr/include/bits/posix1_lim.h" #line 145 "/usr/include/limits.h" #line 1 "/usr/include/bits/posix2_lim.h" #line 87 "/usr/include/bits/posix2_lim.h" #line 149 "/usr/include/limits.h" #line 24 "/opt/intel/compiler70/ia32/include/limits.h" #line 47 "/opt/intel/compiler70/ia32/include/limits.h" #line 81 "/opt/intel/compiler70/ia32/include/limits.h" #line 96 "/opt/intel/compiler70/ia32/include/limits.h" #line 119 "/opt/intel/compiler70/ia32/include/limits.h" #line 4 "conftest.c" Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/malloc.h" #line 1 "/opt/intel/compiler70/ia32/include/stddef.h" #line 1 "/opt/intel/compiler70/ia32/include/yvals.h" #line 1 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 1 "/opt/intel/compiler70/ia32/include/xarg.h" typedef char * va_list; typedef va_list __gnuc_va_list; #line 114 "/opt/intel/compiler70/ia32/include/xarg.h" #line 30 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 43 "/opt/intel/compiler70/ia32/include/stdarg.h" #line... ... _t malloc_usable_size (void * __ptr); extern void malloc_stats (void); extern void * malloc_get_state (void); extern int malloc_set_state (void * __ptr); extern void (*__malloc_initialize_hook) (void); extern void (*__free_hook) (void * __ptr, const void *); extern void * (*__malloc_hook) (size_t __size, const void *); extern void * (*__realloc_hook) (void * __ptr, size_t __size, const void *); extern void * (*__memalign_hook) (size_t __alignment, size_t __size, const void *); extern void (*__after_morecore_hook) (void); extern void __malloc_check_init (void); #line 4 "conftest.c" Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/pwd.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/include... ... uid_t __uid, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwnam_r (__const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); #line 183 "/usr/include/pwd.h" #line 4 "conftest.c" Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/search.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/includ... ... ompar); extern void *tdelete (__const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value, int __level); extern void twalk (__const void *__root, __action_fn_t __action); #line 161 "/usr/include/search.h" extern void *lfind (__const void *__key, __const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (__const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); #line 4 "conftest.c" Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/strings.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/inc... ... typedef _Wchart wchar_t; #line 30 "/usr/include/strings.h" extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) ; extern void bcopy (__const void *__src, void *__dest, size_t __n) ; extern void bzero (void *__s, size_t __n) ; extern int ffs (int __i) __attribute__ ((const)); extern char *index (__const char *__s, int __c) ; extern char *rindex (__const char *__s, int __c) ; extern int strcasecmp (__const char *__s1, __const char *__s2) ; extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) ; #line 4 "conftest.c" Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/unistd.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... ibute__ ((__const__)); extern int truncate (__const char *__file, __off_t __length) ; #line 890 "/usr/include/unistd.h" extern int ftruncate (int __fd, __off_t __length) ; #line 905 "/usr/include/unistd.h" extern int getdtablesize (void) ; extern int brk (void *__addr) ; extern void *sbrk (intptr_t __delta) ; extern long int syscall (long int __sysno, ...) ; extern int lockf (int __fd, int __cmd, __off_t __len); #line 975 "/usr/include/unistd.h" #line 989 "/usr/include/unistd.h" extern int fdatasync (int __fildes) ; #line 1015 "/usr/include/unistd.h" #line 4 "conftest.c" Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "machine/endian.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "machine/endian.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/param.h" #line 1 "/opt/intel/compiler70/ia32/include/limits.h" #line 1 "/opt/intel/compiler70/ia32/include/yvals.h" #line 1 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 1 "/opt/intel/compiler70/ia32/include/xarg.h" typedef char * va_list; typedef va_list __gnuc_va_list; #line 114 "/opt/intel/compiler70/ia32/include/xarg.h" #line 30 "/opt/intel/compiler70/ia32/include/stdarg.h" #line 43 "/opt/intel/compiler70/ia32/include/stdarg.h" #l... ... long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) ; #line 61 "/usr/include/sys/sysmacros.h" #line 15 "/opt/intel/compiler70/ia32/include/sys/sysmacros.h" #line 25 "/opt/intel/compiler70/ia32/include/sys/sysmacros.h" #line 213 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; #line 249 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" #line 43 "/usr/include/sys/param.h" #line 62 "/usr/include/sys/param.h" #line 4 "conftest.c" Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/procfs.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/... ... gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned short int pr_uid; unsigned short int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; #line 4 "conftest.c" Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/resource.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/... ... nt __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) ; #line 66 "/usr/include/sys/resource.h" extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) ; #line 86 "/usr/include/sys/resource.h" extern int getrusage (__rusage_who_t __who, struct rusage *__usage) ; extern int getpriority (__priority_which_t __which, id_t __who) ; extern int setpriority (__priority_which_t __which, id_t __who, int __prio) ; #line 4 "conftest.c" Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "sys/systeminfo.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "sys/systeminfo.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/times.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/i... ... 147 "/usr/include/bits/pthreadtypes.h" typedef unsigned long int pthread_t; #line 144 "/opt/intel/compiler70/ia32/substitute_headers/bits/types.h" #line 57 "/usr/include/time.h" typedef __clock_t clock_t; #line 84 "/usr/include/time.h" #line 96 "/usr/include/time.h" #line 108 "/usr/include/time.h" #line 126 "/usr/include/time.h" #line 416 "/usr/include/time.h" #line 30 "/usr/include/sys/times.h" struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) ; #line 4 "conftest.c" Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/utsname.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32... ... #line 58 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 296 "/usr/include/features.h" #line 1 "/usr/include/gnu/stubs.h" #line 319 "/usr/include/features.h" #line 27 "/usr/include/sys/utsname.h" #line 1 "/usr/include/bits/utsname.h" #line 31 "/usr/include/sys/utsname.h" #line 47 "/usr/include/sys/utsname.h" struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; extern int uname (struct utsname *__name) ; #line 4 "conftest.c" Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/string.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... 2, size_t __n) ; extern char *index (__const char *__s, int __c) ; extern char *rindex (__const char *__s, int __c) ; extern int ffs (int __i) __attribute__ ((__const__)); #line 285 "/usr/include/string.h" extern int strcasecmp (__const char *__s1, __const char *__s2) ; extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) ; #line 305 "/usr/include/string.h" extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) ; #line 348 "/usr/include/string.h" #line 378 "/usr/include/string.h" #line 4 "conftest.c" Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/stdlib.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; #line 870 "/usr/include/stdlib.h" #line 901 "/usr/include/stdlib.h" #line 911 "/usr/include/stdlib.h" extern int getloadavg (double __loadavg[], int __nelem) ; #line 4 "conftest.c" Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/socket.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/in... ... extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) ; extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) ; extern int listen (int __fd, int __n) ; extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern int shutdown (int __fd, int __how) ; extern int isfdtype (int __fd, int __fdtype) ; #line 4 "conftest.c" Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/wait.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/in... ... int __options); #line 1 "/usr/include/bits/siginfo.h" #line 1 "/usr/include/bits/wordsize.h" #line 26 "/usr/include/bits/siginfo.h" #line 39 "/usr/include/bits/siginfo.h" #line 259 "/usr/include/bits/siginfo.h" #line 140 "/usr/include/sys/wait.h" extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (void * __stat_loc, int __options, struct rusage * __usage) ; struct rusage; extern __pid_t wait4 (__pid_t __pid, void * __stat_loc, int __options, struct rusage *__usage) ; #line 4 "conftest.c" Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/netinet/in.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/in... ... 32 (unsigned int __bsx) { return ((((__bsx) & 0xff000000) >> 24) | (((__bsx) & 0x00ff0000) >> 8) | (((__bsx) & 0x0000ff00) << 8) | (((__bsx) & 0x000000ff) << 24)); } #line 132 "/usr/include/bits/byteswap.h" #line 274 "/usr/include/netinet/in.h" #line 295 "/usr/include/netinet/in.h" extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) ; extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) ; struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; #line 386 "/usr/include/netinet/in.h" #line 4 "conftest.c" Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/netdb.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/in... ... e/netdb.h" #line 596 "/usr/include/netdb.h" extern int getaddrinfo (__const char *__restrict __name, __const char *__restrict __service, __const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) ; extern __const char *gai_strerror (int __ecode) ; extern int getnameinfo (__const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, unsigned int __flags); #line 661 "/usr/include/netdb.h" #line 4 "conftest.c" Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "Direct.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "Direct.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/time.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/includ... ... ec *__tp) ; #line 350 "/usr/include/time.h" extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) ; extern int timer_delete (timer_t __timerid) ; extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) ; extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) ; extern int timer_getoverrun (timer_t __timerid) ; #line 397 "/usr/include/time.h" #line 412 "/usr/include/time.h" #line 4 "conftest.c" Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "Ws2tcpip.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "Ws2tcpip.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line... ... nt gnu_dev_minor (unsigned long long int __dev) ; extern __inline unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) ; #line 61 "/usr/include/sys/sysmacros.h" #line 15 "/opt/intel/compiler70/ia32/include/sys/sysmacros.h" #line 25 "/opt/intel/compiler70/ia32/include/sys/sysmacros.h" #line 213 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; #line 249 "/opt/intel/compiler70/ia32/substitute_headers/sys/types.h" #line 4 "conftest.c" Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "WindowsX.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "WindowsX.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "cxxabi.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "cxxabi.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST checkRecursiveMacros from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:158) TESTING: checkRecursiveMacros from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:158) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: ================================================================================ TEST checkMemcmp from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:79) TESTING: checkMemcmp from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:79) Check for 8-bit clean memcmp sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: ================================================================================ TEST checkSysinfo from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:102) TESTING: checkSysinfo from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:102) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for function sysinfo sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SYSINFO" to "1" Checking for header: linux/kernel.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/linux/kernel.h" struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; #line 4 "conftest.c" Defined "HAVE_LINUX_KERNEL_H" to "1" Checking for header: sys/sysinfo.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/sys/sysinfo.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/i... ... long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; #line 26 "/usr/include/sys/sysinfo.h" extern int sysinfo (struct sysinfo *__info) ; extern int get_nprocs_conf (void) ; extern int get_nprocs (void) ; extern long int get_phys_pages (void) ; extern long int get_avphys_pages (void) ; #line 4 "conftest.c" Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "sys/systeminfo.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "sys/systeminfo.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: ret = 1024 error message = {conftest.c(13): catastrophic error: #error directive: "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ compilation aborted for conftest.c (code 4) } Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } ================================================================================ TEST checkVPrintf from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:125) Checking for function vprintf sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_VPRINTF" to "1" sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: ================================================================================ TEST checkSignalHandlerType from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:132) TESTING: checkSignalHandlerType from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:132) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:142) TESTING: checkFreeReturnType from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:142) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: ret = 512 error message = {conftest.c(6): error: a value of type "void" cannot be assigned to an entity of type "int" int ierr; void *p; ierr = free(p); return 0; ^ compilation aborted for conftest.c (code 2) } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `sbreak' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `sbreak' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `task_info' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `task_info' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_access' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_access' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(20): (col. 1)warning #980: wrong number of actual arguments to intrinsic function "getcwd" } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getcwd) || defined (__stub___getcwd) choke me #else getcwd(); #endif ; return 0; } Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_getcwd' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_getcwd' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : the `getwd' function is dangerous and should not be used. output: error message = {conftest.o(.text+0x1f): In function `main': : the `getwd' function is dangerous and should not be used. } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getwd) || defined (__stub___getwd) choke me #else getwd(); #endif ; return 0; } Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(20): (col. 1)warning #980: wrong number of actual arguments to intrinsic function "memmove" } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `PXFGETARG' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `PXFGETARG' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(20): (col. 1)warning #980: wrong number of actual arguments to intrinsic function "signal" } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char signal(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char signal(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_signal) || defined (__stub___signal) choke me #else signal(); #endif ; return 0; } Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SIGSET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_sleep' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_sleep' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_snprintf' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_snprintf' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_fullpath' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_fullpath' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_lseek' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_lseek' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `stricmp' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `stricmp' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_intel_fast_memcpy' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_intel_fast_memcpy' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_intel_fast_memset' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_intel_fast_memset' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_access' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_access' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(20): (col. 1)warning #980: wrong number of actual arguments to intrinsic function "getcwd" } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getcwd) || defined (__stub___getcwd) choke me #else getcwd(); #endif ; return 0; } Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_getcwd' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_getcwd' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : the `getwd' function is dangerous and should not be used. output: error message = {conftest.o(.text+0x1f): In function `main': : the `getwd' function is dangerous and should not be used. } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getwd) || defined (__stub___getwd) choke me #else getwd(); #endif ; return 0; } Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(20): (col. 1)warning #980: wrong number of actual arguments to intrinsic function "memmove" } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `PXFGETARG' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `PXFGETARG' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(20): (col. 1)warning #980: wrong number of actual arguments to intrinsic function "signal" } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char signal(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char signal(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_signal) || defined (__stub___signal) choke me #else signal(); #endif ; return 0; } Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SIGSET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_sleep' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_sleep' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_snprintf' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_snprintf' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_fullpath' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_fullpath' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_lseek' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_lseek' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `stricmp' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `stricmp' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_intel_fast_memcpy' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_intel_fast_memcpy' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_intel_fast_memset' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_intel_fast_memset' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `sbreak' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `sbreak' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `task_info' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `task_info' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "sigfpe.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "sigfpe.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "fpxcp.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "fpxcp.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" Possible ERROR while running preprocessor: conftest.c(3): catastrophic error: could not open source file "floatingpoint.h" #include ^ ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "floatingpoint.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/fortranCommandLine.py:26) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/fortranCommandLine.py:26) Check for the mechanism to retrieve command line arguments in Fortran Pushing language C Checking for function _gfortran_iargc sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `_gfortran_iargc' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `_gfortran_iargc' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _gfortran_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) choke me #else _gfortran_iargc(); #endif ; return 0; } Checking for function ipxfargc_ sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `ipxfargc_' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `ipxfargc_' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char ipxfargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) choke me #else ipxfargc_(); #endif ; return 0; } Checking for function f90_unix_MP_iargc sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `f90_unix_MP_iargc' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `f90_unix_MP_iargc' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char f90_unix_MP_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) choke me #else f90_unix_MP_iargc(); #endif ; return 0; } Checking for function PXFGETARG sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `PXFGETARG' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `PXFGETARG' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } Checking for function iargc_ sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm sh: Defined "HAVE_IARGC_" to "1" Defined "HAVE_BGL_IARGC" to "1" Popping language C ================================================================================ TEST checkSizeTypes from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:44) TESTING: checkSizeTypes from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:44) Checks for types associated with sizes, such as size_t. Checking for type: size_t sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: size_t found ================================================================================ TEST checkFileTypes from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:49) TESTING: checkFileTypes from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:49) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: mode_t found Checking for type: off_t sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: off_t found ================================================================================ TEST checkPID from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:55) TESTING: checkPID from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:55) Checks for pid_t, and defines it if necessary Checking for type: pid_t sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: pid_t found ================================================================================ TEST checkUID from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:59) TESTING: checkUID from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:59) Checks for uid_t and gid_t, and defines them if necessary sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" sys/types.h ================================================================================ TEST checkSignal from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:66) TESTING: checkSignal from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:66) Checks the return type of signal() and defines RETSIGTYPE to that type name sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:87) TESTING: checkC99Complex from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:87) Check for complex numbers in in C99 std sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:96) TESTING: checkCxxComplex from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:96) Check for complex numbers in namespace std Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -O3 -Kc++ conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -O3 -Kc++ conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:117) TESTING: checkFortranKind from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:117) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 7 Lines Compiled } Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:129) TESTING: checkFortranDReal from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:129) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 5 Lines Compiled } Source: program main double precision d d = dreal(3.0) end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language FC ================================================================================ TEST checkConst from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:137) TESTING: checkConst from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:137) Checks for working const, and if not found defines it to empty string sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: ================================================================================ TEST checkEndian from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:193) TESTING: checkEndian from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:193) If the machine is big endian, defines WORDS_BIGENDIAN sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Possible ERROR while running compiler: ret = 512 error message = {conftest.c(11): error: identifier "not" is undefined not big endian ^ conftest.c(11): error: expected a ";" not big endian ^ compilation aborted for conftest.c (code 2) } Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_VOID_P" to "4" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_LONG" to "4" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:288) TESTING: checkBitsPerByte from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:288) Determine the nubmer of bits per byte and define BITS_PER_BYTE sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST configureScalarType from PETSc.utilities.scalarTypes(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/scalarTypes.py:30) TESTING: configureScalarType from PETSc.utilities.scalarTypes(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/scalarTypes.py:30) Choose between real and complex numbers Scalar type is real ================================================================================ TEST configurePrecision from PETSc.utilities.scalarTypes(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/scalarTypes.py:46) TESTING: configurePrecision from PETSc.utilities.scalarTypes(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/scalarTypes.py:46) Set the default real number precision for PETSc objects Precision is double ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lsocket -lnsl -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lsocket -lnsl -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lsocket output: ret = 256 error message = {ld: cannot find -lsocket } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lsocket -lnsl -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lfpe -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lfpe -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lfpe output: ret = 256 error message = {ld: cannot find -lfpe } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lfpe -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lsocket -lnsl -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lsocket -lnsl -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lsocket output: ret = 256 error message = {ld: cannot find -lsocket } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lsocket -lnsl -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lfpe -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lfpe -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lfpe output: ret = 256 error message = {ld: cannot find -lfpe } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -lfpe -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST checkMath from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:177) TESTING: checkMath from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:177) Check for sin() in libm, the math library Checking for functions ['sin', 'floor', 'log10', 'pow'] in library [''] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:193) TESTING: checkMathErf from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:193) Check for erf() in libm, the math library Checking for functions ['erf'] in library [] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkDynamic from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:202) TESTING: checkDynamic from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:202) Check for the header and libraries necessary for dynamic library manipulation Checking for functions ['dlopen'] in library ['dl'] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -ldl -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -ldl -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language C Checking for header: dlfcn.h sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/dlfcn.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/include... ... #line 10 "/opt/intel/compiler70/ia32/include/stddef.h" typedef _Ptrdifft ptrdiff_t; typedef _Sizet size_t; typedef _Wchart wchar_t; #line 26 "/usr/include/dlfcn.h" #line 1 "/usr/include/bits/dlfcn.h" #line 29 "/usr/include/dlfcn.h" #line 43 "/usr/include/dlfcn.h" extern void *dlopen (__const char *__file, int __mode) ; extern int dlclose (void *__handle) ; extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) ; #line 67 "/usr/include/dlfcn.h" extern char *dlerror (void) ; #line 155 "/usr/include/dlfcn.h" #line 4 "conftest.c" Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST alternateConfigureLibrary from config.packages.Boost(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/package.py:355) TESTING: alternateConfigureLibrary from config.packages.Boost(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/package.py:355) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureLibrary from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:384) TESTING: configureLibrary from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:384) ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root (HPUX) ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libveclib.a'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lveclib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lveclib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lveclib output: ret = 256 error message = {ld: cannot find -lveclib } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lveclib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root (F2C) ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libf2cblas.a'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf2cblas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf2cblas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lf2cblas output: ret = 256 error message = {ld: cannot find -lf2cblas } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf2cblas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libfblas.a'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lfblas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lfblas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lfblas output: ret = 256 error message = {ld: cannot find -lfblas } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lfblas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified ATLAS Linux installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libcblas.a', '/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBCBLAS" to "1" Defined "HAVE_LIBF77BLAS" to "1" Defined "HAVE_LIBATLAS" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/lsftmp/g0306332/inter/mkl/liblapack.a'] ['/lsftmp/g0306332/inter/mkl/libcblas.a', '/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a', ' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: /usr/lib/libf77blas.a(xerbla.o)(.text+0x9): In function `xerbla_': : undefined reference to `s_wsfe' /usr/lib/libf77blas.a(xerbla.o)(.text+0x1c): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/libf77blas.a(xerbla.o)(.text+0x2f): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/libf77blas.a(xerbla.o)(.text+0x34): In function `xerbla_': : undefined reference to `e_wsfe' output: ret = 256 error message = {/usr/lib/libf77blas.a(xerbla.o)(.text+0x9): In function `xerbla_': : undefined reference to `s_wsfe' /usr/lib/libf77blas.a(xerbla.o)(.text+0x1c): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/libf77blas.a(xerbla.o)(.text+0x2f): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/libf77blas.a(xerbla.o)(.text+0x34): In function `xerbla_': : undefined reference to `e_wsfe' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Popping language C Checking for functions ['dgeev'] in library ['/lsftmp/g0306332/inter/mkl/liblapack.a'] ['/lsftmp/g0306332/inter/mkl/libcblas.a', '/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a', ' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `dgeev_' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `dgeev_' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified ATLAS Linux installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBF77BLAS" to "1" Defined "HAVE_LIBATLAS" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/lsftmp/g0306332/inter/mkl/liblapack.a'] ['/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a', ' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0xa7): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0xd7): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0x112): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0x142): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0x1b9): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0x229): more undefined references to `cblas_dtrsm' follow /usr/lib/libf77blas.a(xerbla.o)(.text+0x9): In function `xerbla_': : undefined reference to `s_wsfe' /usr/lib/libf77blas.a(xerbla.o)(.text+0x1c): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/libf77blas.a(xerbla.o)(.text+0x2f): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/libf77blas.a(xerbla.o)(.text+0x34): In function `xerbla_': : undefined reference to `e_wsfe' output: ret = 256 error message = {/usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0xa7): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0xd7): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0x112): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0x142): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0x1b9): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/liblapack.a(ATL_dgetrs.o)(.text+0x229): more undefined references to `cblas_dtrsm' follow /usr/lib/libf77blas.a(xerbla.o)(.text+0x9): In function `xerbla_': : undefined reference to `s_wsfe' /usr/lib/libf77blas.a(xerbla.o)(.text+0x1c): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/libf77blas.a(xerbla.o)(.text+0x2f): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/libf77blas.a(xerbla.o)(.text+0x34): In function `xerbla_': : undefined reference to `e_wsfe' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Popping language C Checking for functions ['dgeev'] in library ['/lsftmp/g0306332/inter/mkl/liblapack.a'] ['/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a', ' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `dgeev_' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `dgeev_' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified AMD ACML lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/libacml.a'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib -L/lsftmp/g0306332/inter/mkl/lib -lacml -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib -L/lsftmp/g0306332/inter/mkl/lib -lacml -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lacml output: ret = 256 error message = {ld: cannot find -lacml } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib -L/lsftmp/g0306332/inter/mkl/lib -lacml -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-x86 lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_def -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_def -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lmkl_lapack output: ret = 256 error message = {ld: cannot find -lmkl_lapack } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_def -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-ia64 lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libmkl_lapack.a', 'libmkl_ipf.a', 'guide', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ipf -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ipf -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lmkl_lapack output: ret = 256 error message = {ld: cannot find -lmkl_lapack } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ipf -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-em64t lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libmkl_lapack.a', 'libmkl_em64t.a', 'guide', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_em64t -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_em64t -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lmkl_lapack output: ret = 256 error message = {ld: cannot find -lmkl_lapack } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_em64t -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Mac-x86 lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libmkl_lapack.a', 'libmkl_ia32.a', 'guide'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ia32 -lguide -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ia32 -lguide -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: cannot find -lmkl_lapack output: ret = 256 error message = {ld: cannot find -lmkl_lapack } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ia32 -lguide -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-x86 installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `vslDeleteStream' /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `viRngUniformBits' /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `vslNewStream' output: ret = 256 error message = {/lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `vslDeleteStream' /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `viRngUniformBits' /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `vslNewStream' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-x86 installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C ================================================================================ TEST checkESSL from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:434) TESTING: checkESSL from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:434) Check for the IBM ESSL library Checking for functions ['iessl'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `iessl' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `iessl' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); int main() { iessl() ; return 0; } Popping language C ================================================================================ TEST checkPESSL from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:440) TESTING: checkPESSL from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:440) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions ['pdgemm'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `pdgemm' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `pdgemm' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pdgemm(); int main() { pdgemm() ; return 0; } Popping language C ================================================================================ TEST checkMissing from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:446) TESTING: checkMissing from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:446) Check for missing LAPACK routines Checking for functions ['dgesvd'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dgeev'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dgetrf'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dpotrf'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dpotrs'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C ================================================================================ TEST configureTimers from PETSc.utilities.timer(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_GETCLOCK PETSC_USE_DCLOCK PETSC_USE_NT_TIME. Checking for functions ['MPI_CRAY_barrier'] in library [''] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `MPI_CRAY_barrier' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `MPI_CRAY_barrier' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); int main() { MPI_CRAY_barrier() ; return 0; } Popping language C Cray-MPI test failure Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:497) TESTING: configureLibrary from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:497) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in User specified root directory MPI: [] ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['MPI_Init', 'MPI_Comm_create'] in library [] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language C Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language C Checking for headers User specified root directory MPI: ['/opt/mpich/myrinet/intel/include'] ================================================================================ TEST checkInclude from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:47) TESTING: checkInclude from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:47) Checks if a particular include file can be found along particular include paths sh: /opt/mpich/myrinet/intel/bin/mpicc -E -I/opt/mpich/myrinet/intel/include conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E -I/opt/mpich/myrinet/intel/include conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/opt/mpich/myrinet/intel/include/mpi.h" typedef int MPI_Datatype; #line 64 "/opt/mpich/myrinet/intel/include/mpi.h" #line 86 "/opt/mpich/myrinet/intel/include/mpi.h" #line 100 "/opt/mpich/myrinet/intel/include/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Op; #line 125 "/opt/mpich/myrinet/intel/include/mpi.h" #line 145 "/opt/mpich/myrinet/intel/include/mpi.h" typedef int MPI_Errhandler; typedef union MPIR_HAND... ... ; int PMPI_Init(int *, char ***); int PMPI_Init_thread( int *, char ***, int, int * ); int PMPI_Finalize(void); int PMPI_Initialized(int *); int PMPI_Abort(MPI_Comm, int); int PMPI_Comm_set_name(MPI_Comm, char *); int PMPI_Comm_get_name(MPI_Comm, char *, int *); #line 668 "/opt/mpich/myrinet/intel/include/mpi.h" int PMPI_Pcontrol(const int, ...); int PMPI_Status_set_cancelled( MPI_Status *, int ); int PMPI_Status_set_elements( MPI_Status *, MPI_Datatype, int ); #line 691 "/opt/mpich/myrinet/intel/include/mpi.h" #line 706 "/opt/mpich/myrinet/intel/include/mpi.h" #line 4 "conftest.c" Found header files ['mpi.h'] in ['/opt/mpich/myrinet/intel/include'] ================================================================================ TEST configureConversion from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:163) TESTING: configureConversion from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:163) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MPI_COMM_F2C" to "1" sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MPI_COMM_C2F" to "1" sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureTypes from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:184) TESTING: configureTypes from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:184) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMissingPrototypes from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:212) TESTING: configureMissingPrototypes from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:212) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:468) TESTING: SGIMPICheck from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:468) Returns true if SGI MPI is used Checking for functions ['MPI_SGI_barrier'] in library [] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `MPI_SGI_barrier' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `MPI_SGI_barrier' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); int main() { MPI_SGI_barrier() ; return 0; } Popping language C SGI MPI test failure ================================================================================ TEST FortranMPICheck from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:478) TESTING: FortranMPICheck from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:478) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w -I/opt/mpich/myrinet/intel/include conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w -I/opt/mpich/myrinet/intel/include conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 221 Lines Compiled } Source: program main include 'mpif.h' end Checking for fortran mpi_init() Checking for functions [''] in library [] [] Pushing language FC sh: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w -I/opt/mpich/myrinet/intel/include conftest.F Executing: /opt/mpich/myrinet/intel/bin/mpif90 -c -o conftest.o -I. -fPIC -O -w90 -w -I/opt/mpich/myrinet/intel/include conftest.F sh: Possible ERROR while running compiler: error message = { program MAIN 223 Lines Compiled } Source: program main include 'mpif.h' integer ierr call mpi_init(ierr) end Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpif90 -o conftest -I. -fPIC -O -w90 -w -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language FC Popping language FC Checking for functions ['MPI_Alltoallw'] in library [] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `MPI_Alltoallw' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `MPI_Alltoallw' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Alltoallw(); int main() { MPI_Alltoallw() ; return 0; } Popping language C ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:120) TESTING: checkSharedLibrary from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:120) Check that the libraries for MPI are shared libraries ================================================================================ TEST configureMPIRUN from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:132) TESTING: configureMPIRUN from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:132) Checking for mpirun Pushing language C Popping language C Checking for program /opt/mpich/myrinet/intel/bin/mpiexec...not found Checking for program /opt/mpich/myrinet/intel/bin/mpirun...found Defined make macro "MPIRUN" to "/opt/mpich/myrinet/intel/bin/mpirun" sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o libconftest.so -shared -fPIC -O3 -I/opt/mpich/myrinet/intel/include conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Executing: /opt/mpich/myrinet/intel/bin/mpirun -np 1 ./conftest sh: /opt/mpich/myrinet/intel/bin/mpirun -np 1 ./conftest Executing: /opt/mpich/myrinet/intel/bin/mpirun -np 1 ./conftest Runaway process exceeded time limit of 600.0s ERROR while running executable: Could not execute '/opt/mpich/myrinet/intel/bin/mpirun -np 1 ./conftest': Runaway processRunaway process exceeded time limit of 600.0s Library was not shared Popping language C ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:35) TESTING: configureMissingDefines from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:35) Checks for limits sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:45) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:45) Checks if u_short is undefined sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:51) TESTING: configureMissingFunctions from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:51) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:71) TESTING: configureMissingSignals from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:71) Check for missing signals, and define MISSING_ if necessary sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: ================================================================================ TEST configureMissingPrototypes from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:88) TESTING: configureMissingPrototypes from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:88) sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o -O3 -Kc++ -fPIC conftest.cc sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -O3 -Kc++ conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicxx -o conftest -O3 -Kc++ conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Popping language Cxx ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:110) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:110) ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/libraryOptions.py:46) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/libraryOptions.py:46) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Checking for functions ['bgl_perfctr_void'] in library [''] [] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': : undefined reference to `bgl_perfctr_void' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': : undefined reference to `bgl_perfctr_void' } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); int main() { bgl_perfctr_void() ; return 0; } Popping language C BGL/IBM test failure Defined "USE_32BIT_INT" to "1" ================================================================================ TEST configureISColorValueType from PETSc.utilities.libraryOptions(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/libraryOptions.py:98) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/libraryOptions.py:98) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_CHAR" Defined "IS_COLORING_MAX" to "255" Defined "IS_COLOR_VALUE_TYPE" to "char" ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Sieve(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Sieve(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PARTY(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Triangle(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Triangle(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spooles(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.spooles(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Matlab(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sprng(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.sprng(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Chaco(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ml(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.ml(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.TetGen(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.TetGen(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spai(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.spai(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need Sowing ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.babel(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.babel(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ParMetis(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.ParMetis(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Prometheus(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Prometheus(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.UMFPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.UMFPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ccafe(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.ccafe(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.fftw(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.fftw(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.blacs(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.blacs(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SCALAPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.SCALAPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MUMPS(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.MUMPS(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need c2html ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.FIAT(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.FIAT(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sundials(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.sundials(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MPE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.MPE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.hypre(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/hypre.py:131) TESTING: configureLibrary from PETSc.packages.hypre(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/hypre.py:131) Calls the regular package configureLibrary and then does an additional test needed by hypre ================================================================================== Checking for a functional hypre ************************************************************************************************** You must register to use hypre at http://www.llnl.gov/CASC/hypre/download/hyprebeta_cur_agree.html Once you have registered, config/configure.py will continue and download and install hypre for you ************************************************************************************************** Could not locate an existing copy of hypre: []Downloading hypre Downloading ftp://ftp.mcs.anl.gov/pub/petsc/externalpackages/hypre-1.11.1b.tar.gz to /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre Uncompressing /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre.tar.gz sh: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages; gunzip hypre.tar.gz Executing: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages; gunzip hypre.tar.gz sh: Expanding /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre.tar sh: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages; tar -xf hypre.tar Executing: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages; tar -xf hypre.tar sh: sh: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages; tar -tf hypre.tar | head -n 1 Executing: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages; tar -tf hypre.tar | head -n 1 sh: hypre-1.11.1b/ sh: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages; chmod -R a+r hypre-1.11.1b/;find hypre-1.11.1b/ -type d -name "*" -exec chmod a+rx {} \; Executing: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages; chmod -R a+r hypre-1.11.1b/;find hypre-1.11.1b/ -type d -name "*" -exec chmod a+rx {} \; sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Have to rebuild HYPRE oldargs = new args =--prefix=/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre CC="/opt/mpich/myrinet/intel/bin/mpicc -fPIC -O3 " CXX="/opt/mpich/myrinet/intel/bin/mpicxx -O3 -Kc++ -fPIC " F77="/opt/mpich/myrinet/intel/bin/mpif90 -I. -fPIC -O -w90 -w " --with-MPI-include="/opt/mpich/myrinet/intel/include" --with-MPI-lib-dirs="" --with-MPI-libs="" --without-babel --without-mli --without-FEI --with-blas=yes --with-lapack=yes ================================================================================= Configuring hypre; this may take several minutes ================================================================================= sh: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src;make distclean;./configure --prefix=/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre CC="/opt/mpich/myrinet/intel/bin/mpicc -fPIC -O3 " CXX="/opt/mpich/myrinet/intel/bin/mpicxx -O3 -Kc++ -fPIC " F77="/opt/mpich/myrinet/intel/bin/mpif90 -I. -fPIC -O -w90 -w " --with-MPI-include="/opt/mpich/myrinet/intel/include" --with-MPI-lib-dirs="" --with-MPI-libs="" --without-babel --without-mli --without-FEI --with-blas=yes --with-lapack=yes Executing: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src;make distclean;./configure --prefix=/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre CC="/opt/mpich/myrinet/intel/bin/mpicc -fPIC -O3 " CXX="/opt/mpich/myrinet/intel/bin/mpicxx -O3 -Kc++ -fPIC " F77="/opt/mpich/myrinet/intel/bin/mpif90 -I. -fPIC -O -w90 -w " --with-MPI-include="/opt/mpich/myrinet/intel/include" --with-MPI-lib-dirs="" --with-MPI-libs="" --without-babel --without-mli --without-FEI --with-blas=yes --with-lapack=yes sh: Dist-cleaning utilities ... make[1]: Entering directory `/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src/utilities' rm -f *.o libHYPRE* f2c.h *blas.h *lapack.h rm -rf pchdir tca.map *inslog* make[1]: Leaving directory `/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src/utilities' Dist-cleaning krylov ... make[1]: Entering directory `/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src/krylov' rm -f *.o libHYPRE* rm -rf pchdir tca.map *inslog* make[1]: Leaving directory `/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11... ... gemm_ in -lessl... no checking for dgemm_ in -ldxml... no checking for dgemm_ in -lcxml... no checking for dgemm_ in -lmkl... no checking for dgemm_ in -lscs... no checking for dgemm_ in -latlas... no checking for dgemm_ in -lcomplib.sgimath... no checking for dgemm_ in -lsunmath... no checking for dsygv_ in -llapack... no checking for dsygv_ in -llapack_rs6k... no checking for cabs in -lm... yes checking the hostname... atlas1.nus.edu.sg checking the architecture... LINUX configure: creating ./config.status config.status: creating config/Makefile.config config.status: creating HYPRE_config.h ================================================================================= Compiling hypre; this may take several minutes ================================================================================= sh: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src;HYPRE_INSTALL_DIR=/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre;export HYPRE_INSTALL_DIR; make install Executing: cd /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src;HYPRE_INSTALL_DIR=/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre;export HYPRE_INSTALL_DIR; make install sh: Making utilities ... make[1]: Entering directory `/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src/utilities' /opt/mpich/myrinet/intel/bin/mpicc -fPIC -O3 -O -I.. -I./.. -I. -I/opt/mpich/myrinet/intel/include -DHYPRE_TIMING -DHAVE_CONFIG_H -c amg_linklist.c /opt/mpich/myrinet/intel/bin/mpicc -fPIC -O3 -O -I.. -I./.. -I. -I/opt/mpich/myrinet/intel/include -DHYPRE_TIMING -DHAVE_CONFIG_H -c binsearch.c /opt/mpich/myrinet/intel/bin/mpicc -fPIC -O3 -O -I.. -I./.. -I. -I/opt/mpich/myrinet/intel/include -DHYPRE_TIMING -DHAVE_CONFIG_H -c exchange_data.c /opt/mpich/... ... 11.1b/linux-hypre/include cp -fr /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src/hypre/lib/* /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib/. cp -fr /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/src/hypre/include/* /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/include/. chmod -R a+rX,u+w,go-w /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib chmod -R a+rX,u+w,go-w /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/include sh: /usr/bin/ranlib /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib/lib*.a Executing: /usr/bin/ranlib /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib/lib*.a sh: Checking for library in Download HYPRE: ['/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib/libHYPRE_DistributedMatrix.a', 'libHYPRE_DistributedMatrixPilutSolver.a', 'libHYPRE_Euclid.a', 'libHYPRE_IJ_mv.a', 'libHYPRE_LSI.a', 'libHYPRE_MatrixMatrix.a', 'libHYPRE_ParaSails.a', 'libHYPRE_krylov.a', 'libHYPRE_parcsr_ls.a', 'libHYPRE_parcsr_mv.a', 'libHYPRE_seq_mv.a', 'libHYPRE_sstruct_ls.a', 'libHYPRE_sstruct_mv.a', 'libHYPRE_struct_ls.a', 'libHYPRE_struct_mv.a', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-lpmpich++', '-Wl,-rpath,\\', '-L\\'] ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['HYPRE_IJMatrixCreate'] in library ['/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib/libHYPRE_DistributedMatrix.a', 'libHYPRE_DistributedMatrixPilutSolver.a', 'libHYPRE_Euclid.a', 'libHYPRE_IJ_mv.a', 'libHYPRE_LSI.a', 'libHYPRE_MatrixMatrix.a', 'libHYPRE_ParaSails.a', 'libHYPRE_krylov.a', 'libHYPRE_parcsr_ls.a', 'libHYPRE_parcsr_mv.a', 'libHYPRE_seq_mv.a', 'libHYPRE_sstruct_ls.a', 'libHYPRE_sstruct_mv.a', 'libHYPRE_struct_ls.a', 'libHYPRE_struct_mv.a', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-Wl,-rpath,\\', '-Wl,-rpath,\\', '-L\\', '-lpmpich++', '-Wl,-rpath,\\', '-L\\'] ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread', ' -lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/mpich/myrinet/intel/lib', '-L/opt/mpich/myrinet/intel/lib', '-Wl,-rpath,-rpath', '-Wl,-rpath,-ldl', '-L-ldl', '-lmpich', '-Wl,-rpath,-L', '-lgm', '-lpthread', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-limf', '-lirc', '-lcprts', '-lcxa', '-lunwind', '-ldl', '-lmpichf90nc', '-Wl,-rpath,/opt/gm/lib', '-L/opt/gm/lib', '-lPEPCF90', '-Wl,-rpath,/opt/intel/compiler70/ia32/lib', '-L/opt/intel/compiler70/ia32/lib', '-Wl,-rpath,/usr/lib', '-L/usr/lib', '-lintrins', '-lIEPCF90', '-lF90', '-lm'] Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o -fPIC -O3 conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib -L/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib -lHYPRE_DistributedMatrix -lHYPRE_DistributedMatrixPilutSolver -lHYPRE_Euclid -lHYPRE_IJ_mv -lHYPRE_LSI -lHYPRE_MatrixMatrix -lHYPRE_ParaSails -lHYPRE_krylov -lHYPRE_parcsr_ls -lHYPRE_parcsr_mv -lHYPRE_seq_mv -lHYPRE_sstruct_ls -lHYPRE_sstruct_mv -lHYPRE_struct_ls -lHYPRE_struct_mv -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib -L/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib -lHYPRE_DistributedMatrix -lHYPRE_DistributedMatrixPilutSolver -lHYPRE_Euclid -lHYPRE_IJ_mv -lHYPRE_LSI -lHYPRE_MatrixMatrix -lHYPRE_ParaSails -lHYPRE_krylov -lHYPRE_parcsr_ls -lHYPRE_parcsr_mv -lHYPRE_seq_mv -lHYPRE_sstruct_ls -lHYPRE_sstruct_mv -lHYPRE_struct_ls -lHYPRE_struct_mv -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl sh: Possible ERROR while running linker: ld: unrecognized option '-Wl,-rpath,' ld: use the --help option for usage information output: ret = 256 error message = {ld: unrecognized option '-Wl,-rpath,' ld: use the --help option for usage information } Pushing language C Popping language C in /opt/mpich/myrinet/intel/bin/mpicc -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib -L/nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre/lib -lHYPRE_DistributedMatrix -lHYPRE_DistributedMatrixPilutSolver -lHYPRE_Euclid -lHYPRE_IJ_mv -lHYPRE_LSI -lHYPRE_MatrixMatrix -lHYPRE_ParaSails -lHYPRE_krylov -lHYPRE_parcsr_ls -lHYPRE_parcsr_mv -lHYPRE_seq_mv -lHYPRE_sstruct_ls -lHYPRE_sstruct_mv -lHYPRE_struct_ls -lHYPRE_struct_mv -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -Wl,-rpath,\ -Wl,-rpath,\ -L\ -lpmpich++ -Wl,-rpath,\ -L\ -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/mpich/myrinet/intel/lib -L/opt/mpich/myrinet/intel/lib -Wl,-rpath,-rpath -Wl,-rpath,-ldl -L-ldl -lmpich -Wl,-rpath,-L -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl -lmpichf90nc -Wl,-rpath,/opt/gm/lib -L/opt/gm/lib -lPEPCF90 -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -lintrins -lIEPCF90 -lF90 -lm -Wl,-rpath,\ -Wl,-rpath,\ -L\ -ldl -lmpich -Wl,-rpath,\ -L\ -lgm -lpthread -Wl,-rpath,/opt/intel/compiler70/ia32/lib -L/opt/intel/compiler70/ia32/lib -Wl,-rpath,/usr/lib -L/usr/lib -limf -lirc -lcprts -lcxa -lunwind -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char HYPRE_IJMatrixCreate(); int main() { HYPRE_IJMatrixCreate() ; return 0; } Popping language C ********************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): --------------------------------------------------------------------------------------- Downloaded hypre could not be used. Please check install in /nas/lsftmp/g0306332/petsc-2.3.2-p8/externalpackages/hypre-1.11.1b/linux-hypre ********************************************************************************* File "./config/configure.py", line 175, in petsc_configure framework.configure(out = sys.stdout) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/framework.py", line 876, in configure child.configure() File "/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py", line 373, in configure self.executeTest(self.configureLibrary) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/base.py", line 93, in executeTest return apply(test, args,kargs) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/hypre.py", line 134, in configureLibrary PETSc.package.Package.configureLibrary(self) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py", line 321, in configureLibrary for location, dir, lib, incl in self.generateGuesses(): File "/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py", line 177, in generateGuesses raise RuntimeError('Downloaded '+self.package+' could not be used. Please check install in '+d+'\n') ================================================================================= ================================================================================= Previous configure logs below ================================================================================= Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.guess Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.guess sh: i686-pc-linux-gnu sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.sub i686-pc-linux-gnu Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.sub i686-pc-linux-gnu sh: i686-pc-linux-gnu ================================================================================ ================================================================================ Starting Configure Run at Mon Feb 12 10:35:33 2007 Configure Options: --with-vendor-compilers=intel --with-blas-lapack-dir=/lsftmp/g0306332/inter/mkl/ --with-x=0 --with-shared --with-mpi-dir=/opt/mpich/myrinet/intel/ --with-debugging=0 --download-hypre=1 --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions Working directory: /nas/lsftmp/g0306332/petsc-2.3.2-p8 Python version: 2.2.3 (#1, Sep 30 2004, 22:31:19) [GCC 3.2.3 20030502 (Red Hat Linux 3.2.3-42)] ================================================================================ Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/framework.py:807) TESTING: configureExternalPackagesDir from config.framework(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/framework.py:807) ================================================================================ TEST configureLibrary from PETSc.packages.PVODE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.PVODE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/PVODE.py:10) Find a PVODE installation and check if it can work with PETSc ================================================================================ TEST configureLibrary from PETSc.packages.NetCDF(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/NetCDF.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/NetCDF.py:10) Find a NetCDF installation and check if it can work with PETSc ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /opt/mpich/myrinet/intel/bin/gdb...not found Checking for program /opt/gridengine/bin/glinux/gdb...not found Checking for program /usr/java/jdk1.5.0/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/globus/bin/gdb...not found Checking for program /opt/globus/sbin/gdb...not found Checking for program /usr/lsf6/bin/gdb...not found Checking for program /opt/mpich/myrinet/intel/bin/gdb...not found Checking for program /opt/gridengine/bin/glinux/gdb...not found Checking for program /usr/kerberos/bin/gdb...not found Checking for program /usr/java/jdk1.5.0/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /usr/lsf6/bin/gdb...not found Checking for program /usr/lsf6/etc/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /opt/mpich/myrinet/intel/bin/dbx...not found Checking for program /opt/gridengine/bin/glinux/dbx...not found Checking for program /usr/java/jdk1.5.0/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/globus/bin/dbx...not found Checking for program /opt/globus/sbin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /opt/mpich/myrinet/intel/bin/dbx...not found Checking for program /opt/gridengine/bin/glinux/dbx...not found Checking for program /usr/kerberos/bin/dbx...not found Checking for program /usr/java/jdk1.5.0/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /usr/lsf6/etc/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /app1/linux/amber8-2/exe/dbx...not found Checking for program /opt/ganglia/bin/dbx...not found Checking for program /opt/rocks/bin/dbx...not found Checking for program /opt/rocks/sbin/dbx...not found Checking for program /app1/linux/bin/dbx...not found Checking for program /app1/common/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /app1/linux/amber8-2/exe/dbx...not found Checking for program /opt/ganglia/bin/dbx...not found Checking for program /opt/rocks/bin/dbx...not found Checking for program /opt/rocks/sbin/dbx...not found Checking for program /app1/linux/bin/dbx...not found Checking for program /app1/common/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /home/enduser/g0306332/dbx...not found Checking for program /opt/mpich/myrinet/intel/bin/xdb...not found Checking for program /opt/gridengine/bin/glinux/xdb...not found Checking for program /usr/java/jdk1.5.0/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/globus/bin/xdb...not found Checking for program /opt/globus/sbin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /opt/mpich/myrinet/intel/bin/xdb...not found Checking for program /opt/gridengine/bin/glinux/xdb...not found Checking for program /usr/kerberos/bin/xdb...not found Checking for program /usr/java/jdk1.5.0/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /usr/lsf6/etc/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /app1/linux/amber8-2/exe/xdb...not found Checking for program /opt/ganglia/bin/xdb...not found Checking for program /opt/rocks/bin/xdb...not found Checking for program /opt/rocks/sbin/xdb...not found Checking for program /app1/linux/bin/xdb...not found Checking for program /app1/common/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /app1/linux/amber8-2/exe/xdb...not found Checking for program /opt/ganglia/bin/xdb...not found Checking for program /opt/rocks/bin/xdb...not found Checking for program /opt/rocks/sbin/xdb...not found Checking for program /app1/linux/bin/xdb...not found Checking for program /app1/common/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /home/enduser/g0306332/xdb...not found ================================================================================ TEST configureMake from PETSc.utilities.Make(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Make.py:21) TESTING: configureMake from PETSc.utilities.Make(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Make.py:21) Check various things about make Checking for program /opt/mpich/myrinet/intel/bin/make...not found Checking for program /opt/gridengine/bin/glinux/make...not found Checking for program /usr/java/jdk1.5.0/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/globus/bin/make...not found Checking for program /opt/globus/sbin/make...not found Checking for program /usr/lsf6/bin/make...not found Checking for program /opt/mpich/myrinet/intel/bin/make...not found Checking for program /opt/gridengine/bin/glinux/make...not found Checking for program /usr/kerberos/bin/make...not found Checking for program /usr/java/jdk1.5.0/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /usr/lsf6/bin/make...not found Checking for program /usr/lsf6/etc/make...not found Checking for program /usr/local/bin/make...not found Checking for program /bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" sh: strings /usr/bin/make Executing: strings /usr/bin/make sh: /lib/ld-linux.so.2 libc.so.6 strcpy mkstemp64 waitpid getloadavg __strtod_internal stdout getlogin readdir64 sigemptyset strerror fdopen memmove getopt_long getenv setlinebuf __rawmemchr __strtol_internal getpid qsort fgets memcpy dup2 feof malloc remove optarg opterr fflush sigaddset abort pipe strrchr __ctype_tolower_loc kill ctime strcat dcgettext chdir optind stdin wait fnmatch ferror strncmp unlink realloc __strdup sscanf sigaction fread __xstat64 gettimeofday localtime memset opendir __assert_fail strcmp getcwd strsignal getpwnam sprintf fclose setlocale stderr vfork __ctype_b_loc fwrite... ... PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) $(AS) $(ASFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) 3.79.1 i686-pc-linux-gnu /bin/sh #;"*?[]&|<>(){}$`^ -c .out .a .ln .o .c .cc .C .cpp .p .f .F .r .y .l .s .S .mod .sym .def .h .info .dvi .tex .texinfo .texi .txinfo .w .ch .web .sh .elc .el Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC} ${SOBJSC})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureBitKeeper from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:23) TESTING: configureBitKeeper from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:23) Find the BitKeeper executable Checking for program /opt/mpich/myrinet/intel/bin/bk...not found Checking for program /opt/gridengine/bin/glinux/bk...not found Checking for program /usr/java/jdk1.5.0/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/globus/bin/bk...not found Checking for program /opt/globus/sbin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /opt/mpich/myrinet/intel/bin/bk...not found Checking for program /opt/gridengine/bin/glinux/bk...not found Checking for program /usr/kerberos/bin/bk...not found Checking for program /usr/java/jdk1.5.0/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /usr/lsf6/etc/bk...not found Checking for program /usr/local/bin/bk...not found Checking for program /bin/bk...not found Checking for program /usr/bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /app1/linux/amber8-2/exe/bk...not found Checking for program /opt/ganglia/bin/bk...not found Checking for program /opt/rocks/bin/bk...not found Checking for program /opt/rocks/sbin/bk...not found Checking for program /app1/linux/bin/bk...not found Checking for program /app1/common/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /app1/linux/amber8-2/exe/bk...not found Checking for program /opt/ganglia/bin/bk...not found Checking for program /opt/rocks/bin/bk...not found Checking for program /opt/rocks/sbin/bk...not found Checking for program /app1/linux/bin/bk...not found Checking for program /app1/common/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /home/enduser/g0306332/bk...not found ================================================================================ TEST configureCVS from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:30) TESTING: configureCVS from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:30) Find the CVS executable Checking for program /opt/mpich/myrinet/intel/bin/cvs...not found Checking for program /opt/gridengine/bin/glinux/cvs...not found Checking for program /usr/java/jdk1.5.0/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/globus/bin/cvs...not found Checking for program /opt/globus/sbin/cvs...not found Checking for program /usr/lsf6/bin/cvs...not found Checking for program /opt/mpich/myrinet/intel/bin/cvs...not found Checking for program /opt/gridengine/bin/glinux/cvs...not found Checking for program /usr/kerberos/bin/cvs...not found Checking for program /usr/java/jdk1.5.0/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /usr/lsf6/bin/cvs...not found Checking for program /usr/lsf6/etc/cvs...not found Checking for program /usr/local/bin/cvs...not found Checking for program /bin/cvs...not found Checking for program /usr/bin/cvs...found Defined make macro "CVS" to "cvs" ================================================================================ TEST configureSubversion from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:35) TESTING: configureSubversion from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:35) Find the Subversion executable Checking for program /opt/mpich/myrinet/intel/bin/svn...not found Checking for program /opt/gridengine/bin/glinux/svn...not found Checking for program /usr/java/jdk1.5.0/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/globus/bin/svn...not found Checking for program /opt/globus/sbin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /opt/mpich/myrinet/intel/bin/svn...not found Checking for program /opt/gridengine/bin/glinux/svn...not found Checking for program /usr/kerberos/bin/svn...not found Checking for program /usr/java/jdk1.5.0/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /usr/lsf6/etc/svn...not found Checking for program /usr/local/bin/svn...not found Checking for program /bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /usr/X11R6/bin/svn...not found Checking for program /app1/linux/amber8-2/exe/svn...not found Checking for program /opt/ganglia/bin/svn...not found Checking for program /opt/rocks/bin/svn...not found Checking for program /opt/rocks/sbin/svn...not found Checking for program /app1/linux/bin/svn...not found Checking for program /app1/common/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /app1/linux/amber8-2/exe/svn...not found Checking for program /opt/ganglia/bin/svn...not found Checking for program /opt/rocks/bin/svn...not found Checking for program /opt/rocks/sbin/svn...not found Checking for program /app1/linux/bin/svn...not found Checking for program /app1/common/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /usr/X11R6/bin/svn...not found Checking for program /home/enduser/g0306332/svn...not found ================================================================================ TEST configureMkdir from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:21) TESTING: configureMkdir from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:21) Make sure we can have mkdir automatically make intermediate directories Checking for program /opt/mpich/myrinet/intel/bin/mkdir...not found Checking for program /opt/gridengine/bin/glinux/mkdir...not found Checking for program /usr/java/jdk1.5.0/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/globus/bin/mkdir...not found Checking for program /opt/globus/sbin/mkdir...not found Checking for program /usr/lsf6/bin/mkdir...not found Checking for program /opt/mpich/myrinet/intel/bin/mkdir...not found Checking for program /opt/gridengine/bin/glinux/mkdir...not found Checking for program /usr/kerberos/bin/mkdir...not found Checking for program /usr/java/jdk1.5.0/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /usr/lsf6/bin/mkdir...not found Checking for program /usr/lsf6/etc/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /bin/mkdir...found sh: /bin/mkdir -p .conftest/tmp Executing: /bin/mkdir -p .conftest/tmp sh: Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configurePrograms from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:43) TESTING: configurePrograms from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:43) Check for the programs needed to build and run PETSc Checking for program /opt/mpich/myrinet/intel/bin/sh...not found Checking for program /opt/gridengine/bin/glinux/sh...not found Checking for program /usr/java/jdk1.5.0/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/globus/bin/sh...not found Checking for program /opt/globus/sbin/sh...not found Checking for program /usr/lsf6/bin/sh...not found Checking for program /opt/mpich/myrinet/intel/bin/sh...not found Checking for program /opt/gridengine/bin/glinux/sh...not found Checking for program /usr/kerberos/bin/sh...not found Checking for program /usr/java/jdk1.5.0/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /usr/lsf6/bin/sh...not found Checking for program /usr/lsf6/etc/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /opt/mpich/myrinet/intel/bin/sed...not found Checking for program /opt/gridengine/bin/glinux/sed...not found Checking for program /usr/java/jdk1.5.0/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/globus/bin/sed...not found Checking for program /opt/globus/sbin/sed...not found Checking for program /usr/lsf6/bin/sed...not found Checking for program /opt/mpich/myrinet/intel/bin/sed...not found Checking for program /opt/gridengine/bin/glinux/sed...not found Checking for program /usr/kerberos/bin/sed...not found Checking for program /usr/java/jdk1.5.0/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /usr/lsf6/bin/sed...not found Checking for program /usr/lsf6/etc/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" Checking for program /opt/mpich/myrinet/intel/bin/mv...not found Checking for program /opt/gridengine/bin/glinux/mv...not found Checking for program /usr/java/jdk1.5.0/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/globus/bin/mv...not found Checking for program /opt/globus/sbin/mv...not found Checking for program /usr/lsf6/bin/mv...not found Checking for program /opt/mpich/myrinet/intel/bin/mv...not found Checking for program /opt/gridengine/bin/glinux/mv...not found Checking for program /usr/kerberos/bin/mv...not found Checking for program /usr/java/jdk1.5.0/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /usr/lsf6/bin/mv...not found Checking for program /usr/lsf6/etc/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /opt/mpich/myrinet/intel/bin/cp...not found Checking for program /opt/gridengine/bin/glinux/cp...not found Checking for program /usr/java/jdk1.5.0/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/globus/bin/cp...not found Checking for program /opt/globus/sbin/cp...not found Checking for program /usr/lsf6/bin/cp...not found Checking for program /opt/mpich/myrinet/intel/bin/cp...not found Checking for program /opt/gridengine/bin/glinux/cp...not found Checking for program /usr/kerberos/bin/cp...not found Checking for program /usr/java/jdk1.5.0/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /usr/lsf6/bin/cp...not found Checking for program /usr/lsf6/etc/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /opt/mpich/myrinet/intel/bin/grep...not found Checking for program /opt/gridengine/bin/glinux/grep...not found Checking for program /usr/java/jdk1.5.0/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/globus/bin/grep...not found Checking for program /opt/globus/sbin/grep...not found Checking for program /usr/lsf6/bin/grep...not found Checking for program /opt/mpich/myrinet/intel/bin/grep...not found Checking for program /opt/gridengine/bin/glinux/grep...not found Checking for program /usr/kerberos/bin/grep...not found Checking for program /usr/java/jdk1.5.0/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /usr/lsf6/bin/grep...not found Checking for program /usr/lsf6/etc/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /opt/mpich/myrinet/intel/bin/rm...not found Checking for program /opt/gridengine/bin/glinux/rm...not found Checking for program /usr/java/jdk1.5.0/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/globus/bin/rm...not found Checking for program /opt/globus/sbin/rm...not found Checking for program /usr/lsf6/bin/rm...not found Checking for program /opt/mpich/myrinet/intel/bin/rm...not found Checking for program /opt/gridengine/bin/glinux/rm...not found Checking for program /usr/kerberos/bin/rm...not found Checking for program /usr/java/jdk1.5.0/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /usr/lsf6/bin/rm...not found Checking for program /usr/lsf6/etc/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /opt/mpich/myrinet/intel/bin/diff...not found Checking for program /opt/gridengine/bin/glinux/diff...not found Checking for program /usr/java/jdk1.5.0/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/globus/bin/diff...not found Checking for program /opt/globus/sbin/diff...not found Checking for program /usr/lsf6/bin/diff...not found Checking for program /opt/mpich/myrinet/intel/bin/diff...not found Checking for program /opt/gridengine/bin/glinux/diff...not found Checking for program /usr/kerberos/bin/diff...not found Checking for program /usr/java/jdk1.5.0/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /usr/lsf6/bin/diff...not found Checking for program /usr/lsf6/etc/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /bin/diff...not found Checking for program /usr/bin/diff...found sh: /usr/bin/diff -w diff1 diff2 Executing: /usr/bin/diff -w diff1 diff2 sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/enduser/g0306332/ps...not found Checking for program /opt/mpich/myrinet/intel/bin/gzip...not found Checking for program /opt/gridengine/bin/glinux/gzip...not found Checking for program /usr/java/jdk1.5.0/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/globus/bin/gzip...not found Checking for program /opt/globus/sbin/gzip...not found Checking for program /usr/lsf6/bin/gzip...not found Checking for program /opt/mpich/myrinet/intel/bin/gzip...not found Checking for program /opt/gridengine/bin/glinux/gzip...not found Checking for program /usr/kerberos/bin/gzip...not found Checking for program /usr/java/jdk1.5.0/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /usr/lsf6/bin/gzip...not found Checking for program /usr/lsf6/etc/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /bin/gzip...found Defined make macro "GZIP" to "/bin/gzip" Defined "HAVE_GZIP" to "1" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:39) TESTING: configureCLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:39) Choose between C and C++ bindings ================================================================================ TEST configureLanguageSupport from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:45) TESTING: configureLanguageSupport from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:45) Check c-support c++-support and other misc tests Allowing C++ name mangling C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureExternC from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:62) TESTING: configureExternC from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:62) Protect C bindings from C++ mangling Defined "USE_EXTERN_CXX" to " " ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:68) TESTING: configureFortranLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:68) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:34) TESTING: configureDirectories from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:34) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 2 #define PETSC_VERSION_MINOR 3 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 8 #define PETSC_VERSION_DATE "September, 1, 2006" #define PETSC_VERSION_PATCH_DATE "Tue Jan 2 14:33:59 PST 2007" #define PETSC_VERSION_HG "ebeddcedcc065e32fc252af32cf1d01ed4fc7a80" Defined make macro "DIR" to "/nas/lsftmp/g0306332/petsc-2.3.2-p8" Defined "DIR" to "/nas/lsftmp/g0306332/petsc-2.3.2-p8" sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.guess Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.guess sh: i686-pc-linux-gnu sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.sub i686-pc-linux-gnu Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.sub i686-pc-linux-gnu sh: i686-pc-linux-gnu ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:112) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:112) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:119) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:119) This is a tarball installation ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST configureETags from PETSc.utilities.Etags(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST checkVendor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:208) TESTING: checkVendor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:208) Determine the compiler vendor Compiler vendor is "intel" ================================================================================ TEST checkInitialFlags from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:218) TESTING: checkInitialFlags from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:218) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized executableFlags to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:326) TESTING: checkCCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:326) Locate a functional C compiler Checking for program /opt/mpich/myrinet/intel/bin/mpicc...found Defined make macro "CC" to "/opt/mpich/myrinet/intel/bin/mpicc" Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest conftest.o sh: sh: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /opt/mpich/myrinet/intel/bin/mpicc -o conftest conftest.o Executing: /opt/mpich/myrinet/intel/bin/mpicc -o conftest conftest.o sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:375) TESTING: checkCPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:375) Locate a functional C preprocessor Checking for program /opt/mpich/myrinet/intel/bin/mpicc...found Defined make macro "CPP" to "/opt/mpich/myrinet/intel/bin/mpicc -E" Pushing language C sh: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c Executing: /opt/mpich/myrinet/intel/bin/mpicc -E conftest.c sh: #line 1 "conftest.c" #line 1 "confdefs.h" #line 2 "conftest.c" #line 1 "conffix.h" #line 3 "conftest.c" #line 1 "/usr/include/stdlib.h" #line 1 "/usr/include/features.h" #line 105 "/usr/include/features.h" #line 123 "/usr/include/features.h" #line 143 "/usr/include/features.h" #line 153 "/usr/include/features.h" #line 174 "/usr/include/features.h" #line 213 "/usr/include/features.h" #line 280 "/usr/include/features.h" #line 291 "/usr/include/features.h" #line 1 "/opt/intel/compiler70/ia32/include/sys/cdefs.h" #line 29 "/opt/intel/compiler70/ia32/incl... ... t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; #line 870 "/usr/include/stdlib.h" #line 901 "/usr/include/stdlib.h" #line 911 "/usr/include/stdlib.h" extern int getloadavg (double __loadavg[], int __nelem) ; #line 4 "conftest.c" Popping language C ================================================================================ TEST checkCxxCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:478) TESTING: checkCxxCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:478) Locate a functional Cxx compiler Checking for program /opt/mpich/myrinet/intel/bin/mpicxx...found Defined make macro "CXX" to "/opt/mpich/myrinet/intel/bin/mpicxx" Pushing language Cxx sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc sh: sh: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc Executing: /opt/mpich/myrinet/intel/bin/mpicxx -c -o conftest.o conftest.cc ********************************************************************************* CONFIGURATION CRASH (Please send configure.log to petsc-maint@mcs.anl.gov) ********************************************************************************* File "./config/configure.py", line 175, in petsc_configure framework.configure(out = sys.stdout) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/framework.py", line 876, in configure child.configure() File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py", line 1183, in configure self.executeTest(self.checkCxxCompiler) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/base.py", line 93, in executeTest return apply(test, args,kargs) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py", line 490, in checkCxxCompiler self.checkCompiler('Cxx') File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py", line 241, in checkCompiler if not self.checkLink(): File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/base.py", line 487, in checkLink (output, returnCode) = self.outputLink(includes, body, cleanup, codeBegin, codeEnd, shared) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/base.py", line 453, in outputLink (out, err, ret) = self.outputCompile(includes, body, cleanup = 0, codeBegin = codeBegin, codeEnd = codeEnd) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/base.py", line 413, in outputCompile (out, err, ret) = Configure.executeShellCommand(command, checkCommand = report, log = self.framework.log) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/script.py", line 199, in executeShellCommand thread.join(timeout) File "/usr/lib/python2.2/threading.py", line 467, in join self.__block.wait(delay) File "/usr/lib/python2.2/threading.py", line 209, in wait _sleep(delay) ================================================================================= ================================================================================= Previous configure logs below ================================================================================= Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.guess Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.guess sh: i686-pc-linux-gnu sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.sub i686-pc-linux-gnu Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.sub i686-pc-linux-gnu sh: i686-pc-linux-gnu ================================================================================ ================================================================================ Starting Configure Run at Mon Feb 12 10:21:48 2007 Configure Options: --with-fc=/lsftmp/g0306332/inter/fc/bin/ifort --with-blas-lapack-dir=/lsftmp/g0306332/inter/mkl/ --with-mpi=0 --with-x=0 --with-shared --with-debugging=0 --download-hypre=1 --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions Working directory: /nas/lsftmp/g0306332/petsc-2.3.2-p8 Python version: 2.2.3 (#1, Sep 30 2004, 22:31:19) [GCC 3.2.3 20030502 (Red Hat Linux 3.2.3-42)] ================================================================================ Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/framework.py:807) TESTING: configureExternalPackagesDir from config.framework(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/framework.py:807) ================================================================================ TEST configureLibrary from PETSc.packages.PVODE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.PVODE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/PVODE.py:10) Find a PVODE installation and check if it can work with PETSc ================================================================================ TEST configureLibrary from PETSc.packages.NetCDF(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/NetCDF.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/NetCDF.py:10) Find a NetCDF installation and check if it can work with PETSc ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /opt/mpich/myrinet/intel/bin/gdb...not found Checking for program /opt/gridengine/bin/glinux/gdb...not found Checking for program /usr/java/jdk1.5.0/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/globus/bin/gdb...not found Checking for program /opt/globus/sbin/gdb...not found Checking for program /usr/lsf6/bin/gdb...not found Checking for program /opt/mpich/myrinet/intel/bin/gdb...not found Checking for program /opt/gridengine/bin/glinux/gdb...not found Checking for program /usr/kerberos/bin/gdb...not found Checking for program /usr/java/jdk1.5.0/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /usr/lsf6/bin/gdb...not found Checking for program /usr/lsf6/etc/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /opt/mpich/myrinet/intel/bin/dbx...not found Checking for program /opt/gridengine/bin/glinux/dbx...not found Checking for program /usr/java/jdk1.5.0/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/globus/bin/dbx...not found Checking for program /opt/globus/sbin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /opt/mpich/myrinet/intel/bin/dbx...not found Checking for program /opt/gridengine/bin/glinux/dbx...not found Checking for program /usr/kerberos/bin/dbx...not found Checking for program /usr/java/jdk1.5.0/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /usr/lsf6/etc/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /app1/linux/amber8-2/exe/dbx...not found Checking for program /opt/ganglia/bin/dbx...not found Checking for program /opt/rocks/bin/dbx...not found Checking for program /opt/rocks/sbin/dbx...not found Checking for program /app1/linux/bin/dbx...not found Checking for program /app1/common/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /app1/linux/amber8-2/exe/dbx...not found Checking for program /opt/ganglia/bin/dbx...not found Checking for program /opt/rocks/bin/dbx...not found Checking for program /opt/rocks/sbin/dbx...not found Checking for program /app1/linux/bin/dbx...not found Checking for program /app1/common/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /home/enduser/g0306332/dbx...not found Checking for program /opt/mpich/myrinet/intel/bin/xdb...not found Checking for program /opt/gridengine/bin/glinux/xdb...not found Checking for program /usr/java/jdk1.5.0/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/globus/bin/xdb...not found Checking for program /opt/globus/sbin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /opt/mpich/myrinet/intel/bin/xdb...not found Checking for program /opt/gridengine/bin/glinux/xdb...not found Checking for program /usr/kerberos/bin/xdb...not found Checking for program /usr/java/jdk1.5.0/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /usr/lsf6/etc/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /app1/linux/amber8-2/exe/xdb...not found Checking for program /opt/ganglia/bin/xdb...not found Checking for program /opt/rocks/bin/xdb...not found Checking for program /opt/rocks/sbin/xdb...not found Checking for program /app1/linux/bin/xdb...not found Checking for program /app1/common/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /app1/linux/amber8-2/exe/xdb...not found Checking for program /opt/ganglia/bin/xdb...not found Checking for program /opt/rocks/bin/xdb...not found Checking for program /opt/rocks/sbin/xdb...not found Checking for program /app1/linux/bin/xdb...not found Checking for program /app1/common/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /home/enduser/g0306332/xdb...not found ================================================================================ TEST configureMake from PETSc.utilities.Make(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Make.py:21) TESTING: configureMake from PETSc.utilities.Make(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Make.py:21) Check various things about make Checking for program /opt/mpich/myrinet/intel/bin/make...not found Checking for program /opt/gridengine/bin/glinux/make...not found Checking for program /usr/java/jdk1.5.0/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/globus/bin/make...not found Checking for program /opt/globus/sbin/make...not found Checking for program /usr/lsf6/bin/make...not found Checking for program /opt/mpich/myrinet/intel/bin/make...not found Checking for program /opt/gridengine/bin/glinux/make...not found Checking for program /usr/kerberos/bin/make...not found Checking for program /usr/java/jdk1.5.0/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /usr/lsf6/bin/make...not found Checking for program /usr/lsf6/etc/make...not found Checking for program /usr/local/bin/make...not found Checking for program /bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" sh: strings /usr/bin/make Executing: strings /usr/bin/make sh: /lib/ld-linux.so.2 libc.so.6 strcpy mkstemp64 waitpid getloadavg __strtod_internal stdout getlogin readdir64 sigemptyset strerror fdopen memmove getopt_long getenv setlinebuf __rawmemchr __strtol_internal getpid qsort fgets memcpy dup2 feof malloc remove optarg opterr fflush sigaddset abort pipe strrchr __ctype_tolower_loc kill ctime strcat dcgettext chdir optind stdin wait fnmatch ferror strncmp unlink realloc __strdup sscanf sigaction fread __xstat64 gettimeofday localtime memset opendir __assert_fail strcmp getcwd strsignal getpwnam sprintf fclose setlocale stderr vfork __ctype_b_loc fwrite... ... PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) $(AS) $(ASFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) 3.79.1 i686-pc-linux-gnu /bin/sh #;"*?[]&|<>(){}$`^ -c .out .a .ln .o .c .cc .C .cpp .p .f .F .r .y .l .s .S .mod .sym .def .h .info .dvi .tex .texinfo .texi .txinfo .w .ch .web .sh .elc .el Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC} ${SOBJSC})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureBitKeeper from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:23) TESTING: configureBitKeeper from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:23) Find the BitKeeper executable Checking for program /opt/mpich/myrinet/intel/bin/bk...not found Checking for program /opt/gridengine/bin/glinux/bk...not found Checking for program /usr/java/jdk1.5.0/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/globus/bin/bk...not found Checking for program /opt/globus/sbin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /opt/mpich/myrinet/intel/bin/bk...not found Checking for program /opt/gridengine/bin/glinux/bk...not found Checking for program /usr/kerberos/bin/bk...not found Checking for program /usr/java/jdk1.5.0/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /usr/lsf6/etc/bk...not found Checking for program /usr/local/bin/bk...not found Checking for program /bin/bk...not found Checking for program /usr/bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /app1/linux/amber8-2/exe/bk...not found Checking for program /opt/ganglia/bin/bk...not found Checking for program /opt/rocks/bin/bk...not found Checking for program /opt/rocks/sbin/bk...not found Checking for program /app1/linux/bin/bk...not found Checking for program /app1/common/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /app1/linux/amber8-2/exe/bk...not found Checking for program /opt/ganglia/bin/bk...not found Checking for program /opt/rocks/bin/bk...not found Checking for program /opt/rocks/sbin/bk...not found Checking for program /app1/linux/bin/bk...not found Checking for program /app1/common/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /home/enduser/g0306332/bk...not found ================================================================================ TEST configureCVS from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:30) TESTING: configureCVS from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:30) Find the CVS executable Checking for program /opt/mpich/myrinet/intel/bin/cvs...not found Checking for program /opt/gridengine/bin/glinux/cvs...not found Checking for program /usr/java/jdk1.5.0/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/globus/bin/cvs...not found Checking for program /opt/globus/sbin/cvs...not found Checking for program /usr/lsf6/bin/cvs...not found Checking for program /opt/mpich/myrinet/intel/bin/cvs...not found Checking for program /opt/gridengine/bin/glinux/cvs...not found Checking for program /usr/kerberos/bin/cvs...not found Checking for program /usr/java/jdk1.5.0/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /usr/lsf6/bin/cvs...not found Checking for program /usr/lsf6/etc/cvs...not found Checking for program /usr/local/bin/cvs...not found Checking for program /bin/cvs...not found Checking for program /usr/bin/cvs...found Defined make macro "CVS" to "cvs" ================================================================================ TEST configureSubversion from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:35) TESTING: configureSubversion from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:35) Find the Subversion executable Checking for program /opt/mpich/myrinet/intel/bin/svn...not found Checking for program /opt/gridengine/bin/glinux/svn...not found Checking for program /usr/java/jdk1.5.0/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/globus/bin/svn...not found Checking for program /opt/globus/sbin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /opt/mpich/myrinet/intel/bin/svn...not found Checking for program /opt/gridengine/bin/glinux/svn...not found Checking for program /usr/kerberos/bin/svn...not found Checking for program /usr/java/jdk1.5.0/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /usr/lsf6/etc/svn...not found Checking for program /usr/local/bin/svn...not found Checking for program /bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /usr/X11R6/bin/svn...not found Checking for program /app1/linux/amber8-2/exe/svn...not found Checking for program /opt/ganglia/bin/svn...not found Checking for program /opt/rocks/bin/svn...not found Checking for program /opt/rocks/sbin/svn...not found Checking for program /app1/linux/bin/svn...not found Checking for program /app1/common/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /app1/linux/amber8-2/exe/svn...not found Checking for program /opt/ganglia/bin/svn...not found Checking for program /opt/rocks/bin/svn...not found Checking for program /opt/rocks/sbin/svn...not found Checking for program /app1/linux/bin/svn...not found Checking for program /app1/common/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /usr/X11R6/bin/svn...not found Checking for program /home/enduser/g0306332/svn...not found ================================================================================ TEST configureMkdir from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:21) TESTING: configureMkdir from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:21) Make sure we can have mkdir automatically make intermediate directories Checking for program /opt/mpich/myrinet/intel/bin/mkdir...not found Checking for program /opt/gridengine/bin/glinux/mkdir...not found Checking for program /usr/java/jdk1.5.0/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/globus/bin/mkdir...not found Checking for program /opt/globus/sbin/mkdir...not found Checking for program /usr/lsf6/bin/mkdir...not found Checking for program /opt/mpich/myrinet/intel/bin/mkdir...not found Checking for program /opt/gridengine/bin/glinux/mkdir...not found Checking for program /usr/kerberos/bin/mkdir...not found Checking for program /usr/java/jdk1.5.0/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /usr/lsf6/bin/mkdir...not found Checking for program /usr/lsf6/etc/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /bin/mkdir...found sh: /bin/mkdir -p .conftest/tmp Executing: /bin/mkdir -p .conftest/tmp sh: Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configurePrograms from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:43) TESTING: configurePrograms from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:43) Check for the programs needed to build and run PETSc Checking for program /opt/mpich/myrinet/intel/bin/sh...not found Checking for program /opt/gridengine/bin/glinux/sh...not found Checking for program /usr/java/jdk1.5.0/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/globus/bin/sh...not found Checking for program /opt/globus/sbin/sh...not found Checking for program /usr/lsf6/bin/sh...not found Checking for program /opt/mpich/myrinet/intel/bin/sh...not found Checking for program /opt/gridengine/bin/glinux/sh...not found Checking for program /usr/kerberos/bin/sh...not found Checking for program /usr/java/jdk1.5.0/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /usr/lsf6/bin/sh...not found Checking for program /usr/lsf6/etc/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /opt/mpich/myrinet/intel/bin/sed...not found Checking for program /opt/gridengine/bin/glinux/sed...not found Checking for program /usr/java/jdk1.5.0/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/globus/bin/sed...not found Checking for program /opt/globus/sbin/sed...not found Checking for program /usr/lsf6/bin/sed...not found Checking for program /opt/mpich/myrinet/intel/bin/sed...not found Checking for program /opt/gridengine/bin/glinux/sed...not found Checking for program /usr/kerberos/bin/sed...not found Checking for program /usr/java/jdk1.5.0/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /usr/lsf6/bin/sed...not found Checking for program /usr/lsf6/etc/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" Checking for program /opt/mpich/myrinet/intel/bin/mv...not found Checking for program /opt/gridengine/bin/glinux/mv...not found Checking for program /usr/java/jdk1.5.0/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/globus/bin/mv...not found Checking for program /opt/globus/sbin/mv...not found Checking for program /usr/lsf6/bin/mv...not found Checking for program /opt/mpich/myrinet/intel/bin/mv...not found Checking for program /opt/gridengine/bin/glinux/mv...not found Checking for program /usr/kerberos/bin/mv...not found Checking for program /usr/java/jdk1.5.0/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /usr/lsf6/bin/mv...not found Checking for program /usr/lsf6/etc/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /opt/mpich/myrinet/intel/bin/cp...not found Checking for program /opt/gridengine/bin/glinux/cp...not found Checking for program /usr/java/jdk1.5.0/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/globus/bin/cp...not found Checking for program /opt/globus/sbin/cp...not found Checking for program /usr/lsf6/bin/cp...not found Checking for program /opt/mpich/myrinet/intel/bin/cp...not found Checking for program /opt/gridengine/bin/glinux/cp...not found Checking for program /usr/kerberos/bin/cp...not found Checking for program /usr/java/jdk1.5.0/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /usr/lsf6/bin/cp...not found Checking for program /usr/lsf6/etc/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /opt/mpich/myrinet/intel/bin/grep...not found Checking for program /opt/gridengine/bin/glinux/grep...not found Checking for program /usr/java/jdk1.5.0/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/globus/bin/grep...not found Checking for program /opt/globus/sbin/grep...not found Checking for program /usr/lsf6/bin/grep...not found Checking for program /opt/mpich/myrinet/intel/bin/grep...not found Checking for program /opt/gridengine/bin/glinux/grep...not found Checking for program /usr/kerberos/bin/grep...not found Checking for program /usr/java/jdk1.5.0/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /usr/lsf6/bin/grep...not found Checking for program /usr/lsf6/etc/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /opt/mpich/myrinet/intel/bin/rm...not found Checking for program /opt/gridengine/bin/glinux/rm...not found Checking for program /usr/java/jdk1.5.0/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/globus/bin/rm...not found Checking for program /opt/globus/sbin/rm...not found Checking for program /usr/lsf6/bin/rm...not found Checking for program /opt/mpich/myrinet/intel/bin/rm...not found Checking for program /opt/gridengine/bin/glinux/rm...not found Checking for program /usr/kerberos/bin/rm...not found Checking for program /usr/java/jdk1.5.0/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /usr/lsf6/bin/rm...not found Checking for program /usr/lsf6/etc/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /opt/mpich/myrinet/intel/bin/diff...not found Checking for program /opt/gridengine/bin/glinux/diff...not found Checking for program /usr/java/jdk1.5.0/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/globus/bin/diff...not found Checking for program /opt/globus/sbin/diff...not found Checking for program /usr/lsf6/bin/diff...not found Checking for program /opt/mpich/myrinet/intel/bin/diff...not found Checking for program /opt/gridengine/bin/glinux/diff...not found Checking for program /usr/kerberos/bin/diff...not found Checking for program /usr/java/jdk1.5.0/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /usr/lsf6/bin/diff...not found Checking for program /usr/lsf6/etc/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /bin/diff...not found Checking for program /usr/bin/diff...found sh: /usr/bin/diff -w diff1 diff2 Executing: /usr/bin/diff -w diff1 diff2 sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/enduser/g0306332/ps...not found Checking for program /opt/mpich/myrinet/intel/bin/gzip...not found Checking for program /opt/gridengine/bin/glinux/gzip...not found Checking for program /usr/java/jdk1.5.0/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/globus/bin/gzip...not found Checking for program /opt/globus/sbin/gzip...not found Checking for program /usr/lsf6/bin/gzip...not found Checking for program /opt/mpich/myrinet/intel/bin/gzip...not found Checking for program /opt/gridengine/bin/glinux/gzip...not found Checking for program /usr/kerberos/bin/gzip...not found Checking for program /usr/java/jdk1.5.0/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /usr/lsf6/bin/gzip...not found Checking for program /usr/lsf6/etc/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /bin/gzip...found Defined make macro "GZIP" to "/bin/gzip" Defined "HAVE_GZIP" to "1" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:39) TESTING: configureCLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:39) Choose between C and C++ bindings ================================================================================ TEST configureLanguageSupport from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:45) TESTING: configureLanguageSupport from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:45) Check c-support c++-support and other misc tests Allowing C++ name mangling C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureExternC from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:62) TESTING: configureExternC from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:62) Protect C bindings from C++ mangling Defined "USE_EXTERN_CXX" to " " ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:68) TESTING: configureFortranLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:68) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:34) TESTING: configureDirectories from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:34) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 2 #define PETSC_VERSION_MINOR 3 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 8 #define PETSC_VERSION_DATE "September, 1, 2006" #define PETSC_VERSION_PATCH_DATE "Tue Jan 2 14:33:59 PST 2007" #define PETSC_VERSION_HG "ebeddcedcc065e32fc252af32cf1d01ed4fc7a80" Defined make macro "DIR" to "/nas/lsftmp/g0306332/petsc-2.3.2-p8" Defined "DIR" to "/nas/lsftmp/g0306332/petsc-2.3.2-p8" sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.guess Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.guess sh: i686-pc-linux-gnu sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.sub i686-pc-linux-gnu Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.sub i686-pc-linux-gnu sh: i686-pc-linux-gnu ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:112) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:112) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:119) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:119) This is a tarball installation ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST configureETags from PETSc.utilities.Etags(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST checkVendor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:208) TESTING: checkVendor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:208) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:218) TESTING: checkInitialFlags from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:218) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized executableFlags to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:326) TESTING: checkCCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:326) Locate a functional C compiler Checking for program /opt/mpich/myrinet/intel/bin/gcc...not found Checking for program /opt/gridengine/bin/glinux/gcc...not found Checking for program /usr/java/jdk1.5.0/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/globus/bin/gcc...not found Checking for program /opt/globus/sbin/gcc...not found Checking for program /usr/lsf6/bin/gcc...not found Checking for program /opt/mpich/myrinet/intel/bin/gcc...not found Checking for program /opt/gridengine/bin/glinux/gcc...not found Checking for program /usr/kerberos/bin/gcc...not found Checking for program /usr/java/jdk1.5.0/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /usr/lsf6/bin/gcc...not found Checking for program /usr/lsf6/etc/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CC" to "gcc" Pushing language C sh: gcc -c -o conftest.o conftest.c Executing: gcc -c -o conftest.o conftest.c sh: sh: gcc -c -o conftest.o conftest.c Executing: gcc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: gcc -o conftest conftest.o Executing: gcc -o conftest conftest.o sh: sh: gcc -c -o conftest.o conftest.c Executing: gcc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest conftest.o Executing: gcc -o conftest conftest.o sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:375) TESTING: checkCPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:375) Locate a functional C preprocessor Checking for program /opt/mpich/myrinet/intel/bin/gcc...not found Checking for program /opt/gridengine/bin/glinux/gcc...not found Checking for program /usr/java/jdk1.5.0/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/globus/bin/gcc...not found Checking for program /opt/globus/sbin/gcc...not found Checking for program /usr/lsf6/bin/gcc...not found Checking for program /opt/mpich/myrinet/intel/bin/gcc...not found Checking for program /opt/gridengine/bin/glinux/gcc...not found Checking for program /usr/kerberos/bin/gcc...not found Checking for program /usr/java/jdk1.5.0/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /usr/lsf6/bin/gcc...not found Checking for program /usr/lsf6/etc/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CPP" to "gcc -E" Pushing language C sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 # 25 "/usr/include/stdlib.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 26 "/usr/include/stdlib.h" 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/inclu... ... mblen (__const char *__s, size_t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; # 916 "/usr/include/stdlib.h" 3 extern int getloadavg (double __loadavg[], int __nelem) ; # 4 "conftest.c" 2 Popping language C ================================================================================ TEST checkCxxCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:478) TESTING: checkCxxCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:478) Locate a functional Cxx compiler Checking for program /opt/mpich/myrinet/intel/bin/g++...not found Checking for program /opt/gridengine/bin/glinux/g++...not found Checking for program /usr/java/jdk1.5.0/bin/g++...not found Checking for program /opt/intel/compiler70/ia32/bin/g++...not found Checking for program /opt/intel/compiler70/ia32/bin/g++...not found Checking for program /opt/globus/bin/g++...not found Checking for program /opt/globus/sbin/g++...not found Checking for program /usr/lsf6/bin/g++...not found Checking for program /opt/mpich/myrinet/intel/bin/g++...not found Checking for program /opt/gridengine/bin/glinux/g++...not found Checking for program /usr/kerberos/bin/g++...not found Checking for program /usr/java/jdk1.5.0/bin/g++...not found Checking for program /opt/intel/compiler70/ia32/bin/g++...not found Checking for program /opt/intel/compiler70/ia32/bin/g++...not found Checking for program /usr/lsf6/bin/g++...not found Checking for program /usr/lsf6/etc/g++...not found Checking for program /usr/local/bin/g++...not found Checking for program /bin/g++...not found Checking for program /usr/bin/g++...found Defined make macro "CXX" to "g++" Pushing language Cxx sh: g++ -c -o conftest.o conftest.cc Executing: g++ -c -o conftest.o conftest.cc sh: sh: g++ -c -o conftest.o conftest.cc Executing: g++ -c -o conftest.o conftest.cc sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: g++ -o conftest conftest.o Executing: g++ -o conftest conftest.o sh: sh: g++ -c -o conftest.o conftest.cc Executing: g++ -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: g++ -o conftest conftest.o Executing: g++ -o conftest conftest.o sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:530) TESTING: checkCxxPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:530) Locate a functional Cxx preprocessor Checking for program /opt/mpich/myrinet/intel/bin/g++...not found Checking for program /opt/gridengine/bin/glinux/g++...not found Checking for program /usr/java/jdk1.5.0/bin/g++...not found Checking for program /opt/intel/compiler70/ia32/bin/g++...not found Checking for program /opt/intel/compiler70/ia32/bin/g++...not found Checking for program /opt/globus/bin/g++...not found Checking for program /opt/globus/sbin/g++...not found Checking for program /usr/lsf6/bin/g++...not found Checking for program /opt/mpich/myrinet/intel/bin/g++...not found Checking for program /opt/gridengine/bin/glinux/g++...not found Checking for program /usr/kerberos/bin/g++...not found Checking for program /usr/java/jdk1.5.0/bin/g++...not found Checking for program /opt/intel/compiler70/ia32/bin/g++...not found Checking for program /opt/intel/compiler70/ia32/bin/g++...not found Checking for program /usr/lsf6/bin/g++...not found Checking for program /usr/lsf6/etc/g++...not found Checking for program /usr/local/bin/g++...not found Checking for program /bin/g++...not found Checking for program /usr/bin/g++...found Defined make macro "CXXCPP" to "g++ -E" Pushing language Cxx sh: g++ -E conftest.cc Executing: g++ -E conftest.cc sh: # 1 "conftest.cc" # 1 "" # 1 "" # 1 "conftest.cc" # 1 "confdefs.h" 1 # 2 "conftest.cc" 2 # 1 "conffix.h" 1 extern "C" { } # 3 "conftest.cc" 2 # 1 "/usr/include/c++/3.2.3/cstdlib" 1 3 # 48 "/usr/include/c++/3.2.3/cstdlib" 3 # 1 "/usr/include/c++/3.2.3/i386-pc-linux/bits/c++config.h" 1 3 # 34 "/usr/include/c++/3.2.3/i386-pc-linux/bits/c++config.h" 3 # 1 "/usr/include/c++/3.2.3/i386-pc-linux/bits/os_defines.h" 1 3 # 39 "/usr/include/c++/3.2.3/i386-pc-linux/bits/os_defines.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h... ... __n / __d; __q.rem = __n % __d; return __q; } inline lldiv_t lldiv(long long __n, long long __d) { lldiv_t __q; __q.quot = __n / __d; __q.rem = __n % __d; return __q; } using ::atoll; using ::strtof; using ::strtoll; using ::strtoull; using ::strtold; } namespace std { using __gnu_cxx::lldiv_t; using __gnu_cxx::_Exit; using __gnu_cxx::abs; using __gnu_cxx::llabs; using __gnu_cxx::div; using __gnu_cxx::lldiv; using __gnu_cxx::atoll; using __gnu_cxx::strtof; using __gnu_cxx::strtoll; using __gnu_cxx::strtoull; using __gnu_cxx::strtold; } # 4 "conftest.cc" 2 Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:638) TESTING: checkFortranCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:638) Locate a functional Fortran compiler Checking for program /lsftmp/g0306332/inter/fc/bin/ifort...found Defined make macro "FC" to "/lsftmp/g0306332/inter/fc/bin/ifort" Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F sh: sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest conftest.o Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest conftest.o sh: sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest conftest.o Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest conftest.o sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:673) TESTING: checkFortranComments from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:673) Make sure fortran comment "!" works Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F sh: Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkBrokenMpif90 from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:682) TESTING: checkBrokenMpif90 from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:682) mpif90 from mpich1 and older c-preprocessor combinations misbehave Pushing language FC Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:722) TESTING: checkPIC from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:722) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Trying C compiler flag -PIC sh: gcc -c -o conftest.o conftest.c Executing: gcc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -PIC conftest.o Executing: gcc -o conftest -PIC conftest.o sh: Possible ERROR while running linker: gcc: unrecognized option `-PIC' output: error message = {gcc: unrecognized option `-PIC' } Pushing language C Popping language C in gcc -o conftest -PIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting C linker flag -PIC due to gcc: unrecognized option `-PIC' Rejected C compiler flag -PIC because linker cannot handle it Trying C compiler flag -fPIC sh: gcc -c -o conftest.o conftest.c Executing: gcc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC conftest.o Executing: gcc -o conftest -fPIC conftest.o sh: Valid C linker flag -fPIC Adding C compiler flag -fPIC sh: gcc -c -o conftest.o -fPIC conftest.c Executing: gcc -c -o conftest.o -fPIC conftest.c sh: Added C compiler flag -fPIC Popping language C Pushing language Cxx Trying Cxx compiler flag -PIC sh: g++ -c -o conftest.o conftest.cc Executing: g++ -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: g++ -o conftest -PIC conftest.o Executing: g++ -o conftest -PIC conftest.o sh: Possible ERROR while running linker: g++: unrecognized option `-PIC' output: error message = {g++: unrecognized option `-PIC' } Pushing language C Popping language C in g++ -o conftest -PIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting Cxx linker flag -PIC due to g++: unrecognized option `-PIC' Rejected Cxx compiler flag -PIC because linker cannot handle it Trying Cxx compiler flag -fPIC sh: g++ -c -o conftest.o conftest.cc Executing: g++ -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: g++ -o conftest -fPIC conftest.o Executing: g++ -o conftest -fPIC conftest.o sh: Valid Cxx linker flag -fPIC Adding Cxx compiler flag -fPIC sh: g++ -c -o conftest.o -fPIC conftest.cc Executing: g++ -c -o conftest.o -fPIC conftest.cc sh: Added Cxx compiler flag -fPIC Popping language Cxx Pushing language FC Trying FC compiler flag -PIC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -PIC conftest.o Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -PIC conftest.o sh: Possible ERROR while running linker: ifort: Command line warning: ignoring option '-P'; no argument required output: error message = {ifort: Command line warning: ignoring option '-P'; no argument required } Pushing language C Popping language C in /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -PIC conftest.o Source: program main end Rejecting FC linker flag -PIC due to ifort: Command line warning: ignoring option '-P'; no argument required Rejected FC compiler flag -PIC because linker cannot handle it Trying FC compiler flag -fPIC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC conftest.o Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC conftest.o sh: Valid FC linker flag -fPIC Adding FC compiler flag -fPIC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC conftest.F sh: Added FC compiler flag -fPIC Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:762) TESTING: checkLargeFileIO from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:762) ================================================================================ TEST checkArchiver from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:852) TESTING: checkArchiver from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:852) Check that the archiver exists and can make a library usable by the compiler Pushing language C sh: gcc -c -o conftest.o -fPIC conftest.c Executing: gcc -c -o conftest.o -fPIC conftest.c sh: Checking for program /opt/mpich/myrinet/intel/bin/ar...not found Checking for program /opt/gridengine/bin/glinux/ar...not found Checking for program /usr/java/jdk1.5.0/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/globus/bin/ar...not found Checking for program /opt/globus/sbin/ar...not found Checking for program /usr/lsf6/bin/ar...not found Checking for program /opt/mpich/myrinet/intel/bin/ar...not found Checking for program /opt/gridengine/bin/glinux/ar...not found Checking for program /usr/kerberos/bin/ar...not found Checking for program /usr/java/jdk1.5.0/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /usr/lsf6/bin/ar...not found Checking for program /usr/lsf6/etc/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /opt/mpich/myrinet/intel/bin/ranlib...not found Checking for program /opt/gridengine/bin/glinux/ranlib...not found Checking for program /usr/java/jdk1.5.0/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/globus/bin/ranlib...not found Checking for program /opt/globus/sbin/ranlib...not found Checking for program /usr/lsf6/bin/ranlib...not found Checking for program /opt/mpich/myrinet/intel/bin/ranlib...not found Checking for program /opt/gridengine/bin/glinux/ranlib...not found Checking for program /usr/kerberos/bin/ranlib...not found Checking for program /usr/java/jdk1.5.0/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /usr/lsf6/bin/ranlib...not found Checking for program /usr/lsf6/etc/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib -c libconf1.a Executing: /usr/bin/ranlib -c libconf1.a sh: Possible ERROR while running ranlib: ret = 2304 error message = {/usr/bin/ranlib: -c: No such file or directory } Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. sh: gcc -c -o conftest.o -fPIC conftest.c Executing: gcc -c -o conftest.o -fPIC conftest.c sh: Checking for program /opt/mpich/myrinet/intel/bin/ar...not found Checking for program /opt/gridengine/bin/glinux/ar...not found Checking for program /usr/java/jdk1.5.0/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/globus/bin/ar...not found Checking for program /opt/globus/sbin/ar...not found Checking for program /usr/lsf6/bin/ar...not found Checking for program /opt/mpich/myrinet/intel/bin/ar...not found Checking for program /opt/gridengine/bin/glinux/ar...not found Checking for program /usr/kerberos/bin/ar...not found Checking for program /usr/java/jdk1.5.0/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /usr/lsf6/bin/ar...not found Checking for program /usr/lsf6/etc/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /opt/mpich/myrinet/intel/bin/ranlib...not found Checking for program /opt/gridengine/bin/glinux/ranlib...not found Checking for program /usr/java/jdk1.5.0/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/globus/bin/ranlib...not found Checking for program /opt/globus/sbin/ranlib...not found Checking for program /usr/lsf6/bin/ranlib...not found Checking for program /opt/mpich/myrinet/intel/bin/ranlib...not found Checking for program /opt/gridengine/bin/glinux/ranlib...not found Checking for program /usr/kerberos/bin/ranlib...not found Checking for program /usr/java/jdk1.5.0/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /usr/lsf6/bin/ranlib...not found Checking for program /usr/lsf6/etc/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib libconf1.a Executing: /usr/bin/ranlib libconf1.a sh: sh: gcc -c -o conftest.o -fPIC conftest.c Executing: gcc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC conftest.o -L. -lconf1 Executing: gcc -o conftest -fPIC conftest.o -L. -lconf1 sh: Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:955) TESTING: checkSharedLinker from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:955) Check that the linker can produce shared libraries Checking shared linker gcc using flags ['-shared'] Checking for program /opt/mpich/myrinet/intel/bin/gcc...not found Checking for program /opt/gridengine/bin/glinux/gcc...not found Checking for program /usr/java/jdk1.5.0/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/globus/bin/gcc...not found Checking for program /opt/globus/sbin/gcc...not found Checking for program /usr/lsf6/bin/gcc...not found Checking for program /opt/mpich/myrinet/intel/bin/gcc...not found Checking for program /opt/gridengine/bin/glinux/gcc...not found Checking for program /usr/kerberos/bin/gcc...not found Checking for program /usr/java/jdk1.5.0/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /usr/lsf6/bin/gcc...not found Checking for program /usr/lsf6/etc/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "LD_SHARED" to "gcc" sh: gcc -c -o conftest.o -fPIC conftest.c Executing: gcc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -shared -fPIC conftest.o Executing: gcc -o conftest -shared -fPIC conftest.o sh: Valid C linker flag -shared sh: gcc -c -o conftest.o -fPIC conftest.c Executing: gcc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: gcc -o libconftest.so -shared -fPIC conftest.o Executing: gcc -o libconftest.so -shared -fPIC conftest.o sh: sh: gcc -c -o conftest.o -fPIC conftest.c Executing: gcc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC conftest.o -L. -lconftest Executing: gcc -o conftest -fPIC conftest.o -L. -lconftest sh: Using shared linker gcc with flags ['-shared'] and library extension so sh: uname -s Executing: uname -s sh: Linux ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1026) TESTING: checkSharedLinkerPaths from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1026) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C sh: gcc -flags Executing: gcc -flags sh: Trying C linker flag -Wl,-rpath, sh: gcc -c -o conftest.o -fPIC conftest.c Executing: gcc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 -fPIC conftest.o Executing: gcc -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 -fPIC conftest.o sh: Valid C linker flag -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 Popping language C Pushing language Cxx sh: gcc -flags Executing: gcc -flags sh: Trying Cxx linker flag -Wl,-rpath, sh: g++ -c -o conftest.o -fPIC conftest.cc Executing: g++ -c -o conftest.o -fPIC conftest.cc sh: Pushing language C Popping language C sh: g++ -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 conftest.o Executing: g++ -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 conftest.o sh: Valid Cxx linker flag -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 Popping language Cxx Pushing language FC sh: gcc -flags Executing: gcc -flags sh: Trying FC linker flag -Wl,-rpath, sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 -fPIC conftest.o Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 -fPIC conftest.o sh: Valid FC linker flag -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1056) TESTING: checkLibC from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1056) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking sh: gcc -c -o conftest.o -fPIC conftest.c Executing: gcc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: gcc -o libconftest.so -shared -fPIC conftest.o Executing: gcc -o libconftest.so -shared -fPIC conftest.o sh: Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1100) TESTING: checkDynamicLinker from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1100) Check that the linker can produce dynamic libraries Checking for header: dlfcn.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 # 23 "/usr/include/dlfcn.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 24 "/usr/include/dlfcn.h" 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/... ... " 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 3 typedef unsigned int size_t; # 26 "/usr/include/dlfcn.h" 2 3 # 1 "/usr/include/bits/dlfcn.h" 1 3 # 29 "/usr/include/dlfcn.h" 2 3 # 45 "/usr/include/dlfcn.h" 3 extern void *dlopen (__const char *__file, int __mode) ; extern int dlclose (void *__handle) ; extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) ; # 71 "/usr/include/dlfcn.h" 3 extern char *dlerror (void) ; # 157 "/usr/include/dlfcn.h" 3 # 4 "conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for functions ['dlopen', 'dlsym', 'dlclose'] in library ['dl'] [] Pushing language C sh: gcc -c -o conftest.o -fPIC conftest.c Executing: gcc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC conftest.o -ldl Executing: gcc -o conftest -fPIC conftest.o -ldl sh: Popping language C Pushing language C sh: gcc -c -o conftest.o -fPIC conftest.c Executing: gcc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC conftest.o -ldl Executing: gcc -o conftest -fPIC conftest.o -ldl sh: Popping language C Pushing language C sh: gcc -c -o conftest.o -fPIC conftest.c Executing: gcc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC conftest.o -ldl Executing: gcc -o conftest -fPIC conftest.o -ldl sh: Popping language C Adding ['dl'] to LIBS sh: uname -s Executing: uname -s sh: Linux Checking dynamic linker gcc using flags ['-shared'] Checking for program /opt/mpich/myrinet/intel/bin/gcc...not found Checking for program /opt/gridengine/bin/glinux/gcc...not found Checking for program /usr/java/jdk1.5.0/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/globus/bin/gcc...not found Checking for program /opt/globus/sbin/gcc...not found Checking for program /usr/lsf6/bin/gcc...not found Checking for program /opt/mpich/myrinet/intel/bin/gcc...not found Checking for program /opt/gridengine/bin/glinux/gcc...not found Checking for program /usr/kerberos/bin/gcc...not found Checking for program /usr/java/jdk1.5.0/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /usr/lsf6/bin/gcc...not found Checking for program /usr/lsf6/etc/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "DYNAMICLINKER" to "gcc" sh: gcc -c -o conftest.o -fPIC conftest.c Executing: gcc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -shared -fPIC conftest.o -ldl Executing: gcc -o conftest -shared -fPIC conftest.o -ldl sh: Valid C linker flag -shared sh: gcc -c -o conftest.o -fPIC conftest.c Executing: gcc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: gcc -o libconftest.so -shared -fPIC conftest.o -ldl Executing: gcc -o libconftest.so -shared -fPIC conftest.o -ldl sh: sh: gcc -c -o conftest.o -fPIC conftest.c Executing: gcc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC conftest.o -ldl Executing: gcc -o conftest -fPIC conftest.o -ldl sh: Using dynamic linker gcc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1146) TESTING: output from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1146) Output module data as defines and substitutions Substituting "CC" with "gcc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "gcc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "g++" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "g++ -E" Substituting "FC" with "/lsftmp/g0306332/inter/fc/bin/ifort" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilerFlags.py:66) TESTING: configureCompilerFlags from config.compilerFlags(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilerFlags.py:66) Get the default compiler flags Pushing language C sh: gcc --version Executing: gcc --version sh: gcc (GCC) 3.2.3 20030502 (Red Hat Linux 3.2.3-42) Copyright (C) 2002 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: gcc gcc (GCC) 3.2.3 20030502 (Red Hat Linux 3.2.3-42) sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... Specify the language of the following input files Permissable languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -Wall sh: gcc -c -o conftest.o -fPIC -Wall conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall conftest.c sh: Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings conftest.c sh: Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-long-double sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -Wno-long-double conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -Wno-long-double conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {cc1: unrecognized option `-Wno-long-double' } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -Wno-long-double due to nonzero status from link Rejecting compiler flag -Wno-long-double due to cc1: unrecognized option `-Wno-long-double' PETSc Error: No output file produced Rejected C compiler flag -Wno-long-double Trying C compiler flag -Wno-strict-aliasing sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {cc1: unrecognized option `-Wno-strict-aliasing' } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -Wno-strict-aliasing due to nonzero status from link Rejecting compiler flag -Wno-strict-aliasing due to cc1: unrecognized option `-Wno-strict-aliasing' PETSc Error: No output file produced Rejected C compiler flag -Wno-strict-aliasing sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... Specify the language of the following input files Permissable languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -O sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Added C compiler flag -O Popping language C Pushing language Cxx sh: g++ --version Executing: g++ --version sh: g++ (GCC) 3.2.3 20030502 (Red Hat Linux 3.2.3-42) Copyright (C) 2002 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: g++ g++ (GCC) 3.2.3 20030502 (Red Hat Linux 3.2.3-42) sh: g++ --help Executing: g++ --help sh: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... Specify the language of the following input files Permissable languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -Wall sh: g++ -c -o conftest.o -Wall -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -fPIC conftest.cc sh: Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings sh: g++ -c -o conftest.o -Wall -Wwrite-strings -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -fPIC conftest.cc sh: Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-long-double sh: g++ -c -o conftest.o -Wall -Wwrite-strings -Wno-long-double -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -Wno-long-double -fPIC conftest.cc sh: Possible ERROR while running compiler: ret = 256 error message = {cc1plus: unrecognized option `-Wno-long-double' } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -Wno-long-double due to nonzero status from link Rejecting compiler flag -Wno-long-double due to cc1plus: unrecognized option `-Wno-long-double' PETSc Error: No output file produced Rejected Cxx compiler flag -Wno-long-double Trying Cxx compiler flag -Wno-strict-aliasing sh: g++ -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC conftest.cc sh: Possible ERROR while running compiler: ret = 256 error message = {cc1plus: unrecognized option `-Wno-strict-aliasing' } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -Wno-strict-aliasing due to nonzero status from link Rejecting compiler flag -Wno-strict-aliasing due to cc1plus: unrecognized option `-Wno-strict-aliasing' PETSc Error: No output file produced Rejected Cxx compiler flag -Wno-strict-aliasing sh: g++ --help Executing: g++ --help sh: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... Specify the language of the following input files Permissable languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -O sh: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc sh: Added Cxx compiler flag -O Popping language Cxx Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort --version Executing: /lsftmp/g0306332/inter/fc/bin/ifort --version sh: ifort (IFORT) 9.1 20061103 Copyright (C) 1985-2006 Intel Corporation. All rights reserved. getCompilerVersion: /lsftmp/g0306332/inter/fc/bin/ifort ifort (IFORT) 9.1 20061103 sh: /lsftmp/g0306332/inter/fc/bin/ifort --help Executing: /lsftmp/g0306332/inter/fc/bin/ifort --help sh: Intel(R) Fortran Compiler Help ============================== usage: ifort [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .F .FOR .F90 .i .i90), assembly (.s .S), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the ifort.cfg file. Compiler Option List -------------------- Performance ----------- -O1 optimize for maximum speed, but disable some o... ... than 3.2) -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor -[no]threads specify whether or not multi-threaded libraries should be linked against Copyright (C) 1985-2006, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. sh: /lsftmp/g0306332/inter/fc/bin/ifort --help Executing: /lsftmp/g0306332/inter/fc/bin/ifort --help sh: Intel(R) Fortran Compiler Help ============================== usage: ifort [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .F .FOR .F90 .i .i90), assembly (.s .S), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the ifort.cfg file. Compiler Option List -------------------- Performance ----------- -O1 optimize for maximum speed, but disable some o... ... than 3.2) -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor -[no]threads specify whether or not multi-threaded libraries should be linked against Copyright (C) 1985-2006, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. sh: /lsftmp/g0306332/inter/fc/bin/ifort --help Executing: /lsftmp/g0306332/inter/fc/bin/ifort --help sh: Intel(R) Fortran Compiler Help ============================== usage: ifort [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .F .FOR .F90 .i .i90), assembly (.s .S), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the ifort.cfg file. Compiler Option List -------------------- Performance ----------- -O1 optimize for maximum speed, but disable some o... ... than 3.2) -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor -[no]threads specify whether or not multi-threaded libraries should be linked against Copyright (C) 1985-2006, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. sh: /lsftmp/g0306332/inter/fc/bin/ifort --help Executing: /lsftmp/g0306332/inter/fc/bin/ifort --help sh: Intel(R) Fortran Compiler Help ============================== usage: ifort [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .F .FOR .F90 .i .i90), assembly (.s .S), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the ifort.cfg file. Compiler Option List -------------------- Performance ----------- -O1 optimize for maximum speed, but disable some o... ... than 3.2) -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor -[no]threads specify whether or not multi-threaded libraries should be linked against Copyright (C) 1985-2006, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. Trying FC compiler flag -O3 sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F sh: Added FC compiler flag -O3 Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================= WARNING! Compiling PETSc with no debugging, this should only be done for timing and production runs. All development should be done when configured using --with-debugging=1 ================================================================================= ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/arch.py:39) TESTING: configureArchitecture from PETSc.utilities.arch(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/arch.py:39) Checks PETSC_ARCH and sets if not set Defined "ARCH" to "linux" Defined "ARCH_NAME" to ""linux-nompi-hypre"" Substituting "ARCH" with "linux-nompi-hypre" ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/sharedLibraries.py:41) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/sharedLibraries.py:41) sh: uname -s Executing: uname -s sh: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "BUILDSHAREDLIB" to "yes" ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/sharedLibraries.py:53) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/sharedLibraries.py:53) Checks whether dynamic libraries should be used, for which you must - Specify --with-dynamic - Have found a working dynamic linker (with dlfcn.h and libdl) Defines PETSC_USE_DYNAMIC_LIBRARIES if they are used Dynamic libraries - disabled ================================================================================ TEST configureBmakeDir from PETSc.utilities.bmakeDir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/bmakeDir.py:26) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/bmakeDir.py:26) Makes bmake/$PETSC_ARCH if it does not exist Changed persistence directory to bmake/linux-nompi-hypre sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... Specify the language of the following input files Permissable languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:126) TESTING: checkRestrict from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:126) Check for the C/CXX restrict keyword Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:5: syntax error before "x" } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:5: warning: unused variable `x' } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:244) TESTING: checkCFormatting from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:244) Activate format string checking if using the GNU compilers compilers: Added gcc printf format checking Defined "PRINTF_FORMAT_CHECK(A,B)" to "__attribute__((format (printf, A, B)))" ================================================================================ TEST checkCStaticInline from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:97) TESTING: checkCStaticInline from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:97) Check for C keyword: static inline Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `i' } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:254) TESTING: checkDynamicLoadFlag from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:254) Checks that dlopen() takes RTLD_GLOBAL, and defines PETSC_HAVE_RTLD_GLOBAL if it does sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -ldl sh: Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:153) TESTING: checkCLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:153) Determines the libraries needed to link with C Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -v -fPIC -Wall -Wwrite-strings -O conftest.o -ldl Executing: gcc -o conftest -v -fPIC -Wall -Wwrite-strings -O conftest.o -ldl sh: Possible ERROR while running linker: Reading specs from /usr/lib/gcc-lib/i386-pc-linux/3.2.3/specs Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --disable-checking --with-system-zlib --enable-__cxa_atexit --host=i386-pc-linux Thread model: posix gcc version 3.2.3 20030502 (Red Hat Linux 3.2.3-42) /usr/lib/gcc-lib/i386-pc-linux/3.2.3/collect2 --eh-frame-hdr -m elf_i386 -dynamic-linker /lib/ld-linux.so.2 -o conftest /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. conftest.o -ldl -lgcc -lgcc_eh -lc -lgcc -lgcc_eh /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o output: error message = {Reading specs from /usr/lib/gcc-lib/i386-pc-linux/3.2.3/specs Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --disable-checking --with-system-zlib --enable-__cxa_atexit --host=i386-pc-linux Thread model: posix gcc version 3.2.3 20030502 (Red Hat Linux 3.2.3-42) /usr/lib/gcc-lib/i386-pc-linux/3.2.3/collect2 --eh-frame-hdr -m elf_i386 -dynamic-linker /lib/ld-linux.so.2 -o conftest /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. conftest.o -ldl -lgcc -lgcc_eh -lc -lgcc -lgcc_eh /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o } Pushing language C Popping language C in gcc -o conftest -v -fPIC -Wall -Wwrite-strings -O conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/specs compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/specs compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../configure compilers: Unknown arg ../configure compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --disable-checking compilers: Unknown arg --disable-checking compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-__cxa_atexit compilers: Unknown arg --enable-__cxa_atexit compilers: Checking arg --host=i386-pc-linux compilers: Unknown arg --host=i386-pc-linux compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.2.3 compilers: Unknown arg 3.2.3 compilers: Checking arg 20030502 compilers: Unknown arg 20030502 compilers: Checking arg (Red compilers: Unknown arg (Red compilers: Checking arg Hat compilers: Unknown arg Hat compilers: Checking arg Linux compilers: Unknown arg Linux compilers: Checking arg 3.2.3-42) compilers: Unknown arg 3.2.3-42) compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/collect2 compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/collect2 compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_i386 compilers: Unknown arg elf_i386 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib/ld-linux.so.2 compilers: Unknown arg /lib/ld-linux.so.2 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 compilers: Found library or library directory: -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. compilers: Found library or library directory: -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -ldl compilers: Found library or library directory: -ldl compilers: Checking arg -lgcc compilers: Checking arg -lgcc_eh compilers: Found library or library directory: -lgcc_eh compilers: Checking arg -lc compilers: Checking arg -lgcc compilers: Checking arg -lgcc_eh compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o compilers: Libraries needed to link C code with another linker: ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh'] compilers: Check that C libraries can be used from Fortran Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F sh: sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language FC sh: g++ --help Executing: g++ --help sh: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... Specify the language of the following input files Permissable languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:126) TESTING: checkRestrict from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:126) Check for the C/CXX restrict keyword Pushing language Cxx sh: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.cc: In function `int main()': conftest.cc:5: syntax error before `;' token conftest.cc:5: warning: unused variable `float*restrict' } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc sh: Possible ERROR while running compiler: error message = {conftest.cc: In function `int main()': conftest.cc:5: warning: unused variable `float* __restrict x' } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:286) TESTING: checkCxxNamespace from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:286) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx sh: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc sh: sh: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc sh: Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:261) TESTING: checkCxxOptionalExtensions from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:261) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx sh: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.c Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.c sh: Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:111) TESTING: checkCxxStaticInline from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:111) Check for C++ keyword: static inline Pushing language Cxx sh: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc sh: Possible ERROR while running compiler: error message = {conftest.cc: In function `int main()': conftest.cc:6: warning: unused variable `int i' } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:301) TESTING: checkCxxLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:301) Determines the libraries needed to link with C++ Pushing language Cxx sh: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc sh: Pushing language C Popping language C sh: g++ -o conftest -v -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: g++ -o conftest -v -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: Reading specs from /usr/lib/gcc-lib/i386-pc-linux/3.2.3/specs Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --disable-checking --with-system-zlib --enable-__cxa_atexit --host=i386-pc-linux Thread model: posix gcc version 3.2.3 20030502 (Red Hat Linux 3.2.3-42) /usr/lib/gcc-lib/i386-pc-linux/3.2.3/collect2 --eh-frame-hdr -m elf_i386 -dynamic-linker /lib/ld-linux.so.2 -o conftest /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. conftest.o -rpath /usr/lib/gcc-lib/i386-pc-linux/3.2.3 -rpath /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o output: error message = {Reading specs from /usr/lib/gcc-lib/i386-pc-linux/3.2.3/specs Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --disable-checking --with-system-zlib --enable-__cxa_atexit --host=i386-pc-linux Thread model: posix gcc version 3.2.3 20030502 (Red Hat Linux 3.2.3-42) /usr/lib/gcc-lib/i386-pc-linux/3.2.3/collect2 --eh-frame-hdr -m elf_i386 -dynamic-linker /lib/ld-linux.so.2 -o conftest /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. conftest.o -rpath /usr/lib/gcc-lib/i386-pc-linux/3.2.3 -rpath /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o } Pushing language C Popping language C in g++ -o conftest -v -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/specs compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/specs compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../configure compilers: Unknown arg ../configure compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --disable-checking compilers: Unknown arg --disable-checking compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-__cxa_atexit compilers: Unknown arg --enable-__cxa_atexit compilers: Checking arg --host=i386-pc-linux compilers: Unknown arg --host=i386-pc-linux compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.2.3 compilers: Unknown arg 3.2.3 compilers: Checking arg 20030502 compilers: Unknown arg 20030502 compilers: Checking arg (Red compilers: Unknown arg (Red compilers: Checking arg Hat compilers: Unknown arg Hat compilers: Checking arg Linux compilers: Unknown arg Linux compilers: Checking arg 3.2.3-42) compilers: Unknown arg 3.2.3-42) compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/collect2 compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/collect2 compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_i386 compilers: Unknown arg elf_i386 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib/ld-linux.so.2 compilers: Unknown arg /lib/ld-linux.so.2 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 compilers: Found library or library directory: -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 Library already in C list so skipping in C++ compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. compilers: Found library or library directory: -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. Library already in C list so skipping in C++ compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/gcc-lib/i386-pc-linux/3.2.3 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. compilers: Checking arg -ldl compilers: Found library or library directory: -ldl Library already in C list so skipping in C++ compilers: Checking arg -lgcc_eh compilers: Found library or library directory: -lgcc_eh Library already in C list so skipping in C++ compilers: Checking arg -ldl compilers: Checking arg -lstdc++ compilers: Found library or library directory: -lstdc++ compilers: Checking arg -lm compilers: Checking arg -lgcc_s compilers: Found library or library directory: -lgcc_s compilers: Checking arg -lgcc compilers: Checking arg -lc compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o compilers: Libraries needed to link Cxx code with another linker: ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lstdc++', '-lgcc_s'] compilers: Check that Cxx libraries can be used from C Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F sh: sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language FC ================================================================================ TEST checkFortranTypeSizes from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:405) TESTING: checkFortranTypeSizes from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:405) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F sh: Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:464) TESTING: checkFortranNameMangling from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:464) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Popping language C Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o confc.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o confc.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:497) TESTING: checkFortranNameManglingDouble from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:497) Checks if symbols containing and underscore append and extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Popping language C Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o confc.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o confc.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x31): In function `MAIN__': : undefined reference to `d1_chk_' output: ret = 256 error message = {conftest.o(.text+0x31): In function `MAIN__': : undefined reference to `d1_chk_' } Pushing language C Popping language C in /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o confc.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: program main call d1_chk() end Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:507) TESTING: checkFortranPreprocessor from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:507) Determine if Fortran handles preprocessing properly Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 -DPTesting conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 -DPTesting conftest.F sh: Added FC compiler flag Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:529) TESTING: checkFortranLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:529) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -V Executing: /lsftmp/g0306332/inter/fc/bin/ifort -V sh: sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -v -fPIC -O3 conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -v -fPIC -O3 conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: Version 9.1 /lsftmp/g0306332/inter/fc/bin/fortcom -mP1OPT_version=910 -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mGLOB_tune_for_fort -mGLOB_use_fort_dope_vector -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mP3OPT_use_mspp_call_convention -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE "-mGLOB_options_string=-o conftest -v -fPIC -O3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl" -mGLOB_position_independent_code -mGLOB_preemption_model=3 -mGLOB_cxx_limited_range=FALSE -mGLOB_as_output_backup_file_name=/tmp/ifortDE8S5Xas_.s -mGLOB_machine_model=GLOB_MACHINE_MODEL_IA32_NONE -mP2OPT_subs_out_of_bound=FALSE -mIPOPT_ninl_user_level=2 -mGLOB_opt_level=3 -mIPOPT_activate -mP2OPT_hlo_level=2 -mP2OPT_hlo -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_ipo_mo_activate -mIPOPT_ipo_mo_nfiles=1 -mIPOPT_source_files_list=/tmp/ifortVDgZz5lst -mIPOPT_short_data_info=/tmp/iforttjGMHysdata -mIPOPT_link_script_file=/tmp/ifortTIRAP1script -mIPOPT_global_data "-mIPOPT_link_version=2.14.90.0.4 20030523" "-mIPOPT_cmdline_link="/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o" "--eh-frame-hdr" "-dynamic-linker" "/lib/ld-linux.so.2" "-m" "elf_i386" "-o" "conftest" "/lsftmp/g0306332/inter/fc/lib/for_main.o" "conftest.o" "-rpath" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3" "-rpath" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." "-ldl" "-lgcc_eh" "-ldl" "-L/lsftmp/g0306332/inter/fc/lib" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" "-Bstatic" "-lifport" "-lifcore" "-limf" "-Bdynamic" "-lm" "-Bstatic" "-lipgo" "-Bdynamic" "-Bstatic" "-lirc" "-Bdynamic" "-lc" "-lgcc_s" "-lgcc" "-Bstatic" "-lirc_s" "-Bdynamic" "-ldl" "-lc" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o"" -mIPOPT_save_il0 -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=/tmp/ipo_ifort52jqk9.o "-mGLOB_linker_version=2.14.90.0.4 20030523" -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_obj_output_file=/tmp/ipo_ifort52jqk9.o -mP1OPT_source_file_name=/tmp/ipo_ifort52jqk9.f conftest.o -mIPOPT_object_files=/tmp/ifortpDycsCtxt -mIPOPT_mo_unique_name=25168 ld /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o --eh-frame-hdr -dynamic-linker /lib/ld-linux.so.2 -m elf_i386 -o conftest /lsftmp/g0306332/inter/fc/lib/for_main.o conftest.o -rpath /usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -rpath /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl -L/lsftmp/g0306332/inter/fc/lib -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -Bstatic -lifport -lifcore -limf -Bdynamic -lm -Bstatic -lipgo -Bdynamic -Bstatic -lirc -Bdynamic -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o rm /tmp/ifortjksFcGgnudirs rm /tmp/ifortpDycsCtxt rm /tmp/ifortVDgZz5lst rm /tmp/iforttjGMHysdata rm /tmp/ifortTIRAP1script rm /tmp/ipo_ifort52jqk9.o rm /tmp/ifortn6KpXugas rm /tmp/ifortDE8S5Xas_.s rm /tmp/ifortZb2nerldashv rm /tmp/ifortPG1KnUgnudirs rm /tmp/iforthC8Xxnarg output: error message = {Version 9.1 /lsftmp/g0306332/inter/fc/bin/fortcom -mP1OPT_version=910 -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mGLOB_tune_for_fort -mGLOB_use_fort_dope_vector -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mP3OPT_use_mspp_call_convention -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE "-mGLOB_options_string=-o conftest -v -fPIC -O3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl" -mGLOB_position_independent_code -mGLOB_preemption_model=3 -mGLOB_cxx_limited_range=FALSE -mGLOB_as_output_backup_file_name=/tmp/ifortDE8S5Xas_.s -mGLOB_machine_model=GLOB_MACHINE_MODEL_IA32_NONE -mP2OPT_subs_out_of_bound=FALSE -mIPOPT_ninl_user_level=2 -mGLOB_opt_level=3 -mIPOPT_activate -mP2OPT_hlo_level=2 -mP2OPT_hlo -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_ipo_mo_activate -mIPOPT_ipo_mo_nfiles=1 -mIPOPT_source_files_list=/tmp/ifortVDgZz5lst -mIPOPT_short_data_info=/tmp/iforttjGMHysdata -mIPOPT_link_script_file=/tmp/ifortTIRAP1script -mIPOPT_global_data "-mIPOPT_link_version=2.14.90.0.4 20030523" "-mIPOPT_cmdline_link="/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o" "--eh-frame-hdr" "-dynamic-linker" "/lib/ld-linux.so.2" "-m" "elf_i386" "-o" "conftest" "/lsftmp/g0306332/inter/fc/lib/for_main.o" "conftest.o" "-rpath" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3" "-rpath" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." "-ldl" "-lgcc_eh" "-ldl" "-L/lsftmp/g0306332/inter/fc/lib" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" "-Bstatic" "-lifport" "-lifcore" "-limf" "-Bdynamic" "-lm" "-Bstatic" "-lipgo" "-Bdynamic" "-Bstatic" "-lirc" "-Bdynamic" "-lc" "-lgcc_s" "-lgcc" "-Bstatic" "-lirc_s" "-Bdynamic" "-ldl" "-lc" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o"" -mIPOPT_save_il0 -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=/tmp/ipo_ifort52jqk9.o "-mGLOB_linker_version=2.14.90.0.4 20030523" -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_obj_output_file=/tmp/ipo_ifort52jqk9.o -mP1OPT_source_file_name=/tmp/ipo_ifort52jqk9.f conftest.o -mIPOPT_object_files=/tmp/ifortpDycsCtxt -mIPOPT_mo_unique_name=25168 ld /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o --eh-frame-hdr -dynamic-linker /lib/ld-linux.so.2 -m elf_i386 -o conftest /lsftmp/g0306332/inter/fc/lib/for_main.o conftest.o -rpath /usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -rpath /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl -L/lsftmp/g0306332/inter/fc/lib -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -Bstatic -lifport -lifcore -limf -Bdynamic -lm -Bstatic -lipgo -Bdynamic -Bstatic -lirc -Bdynamic -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o rm /tmp/ifortjksFcGgnudirs rm /tmp/ifortpDycsCtxt rm /tmp/ifortVDgZz5lst rm /tmp/iforttjGMHysdata rm /tmp/ifortTIRAP1script rm /tmp/ipo_ifort52jqk9.o rm /tmp/ifortn6KpXugas rm /tmp/ifortDE8S5Xas_.s rm /tmp/ifortZb2nerldashv rm /tmp/ifortPG1KnUgnudirs rm /tmp/iforthC8Xxnarg } Pushing language C Popping language C in /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -v -fPIC -O3 conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: program main end Popping language FC compilers: Checking arg Version compilers: Unknown arg Version compilers: Checking arg 9.1 compilers: Unknown arg 9.1 compilers: Checking arg /lsftmp/g0306332/inter/fc/bin/fortcom compilers: Unknown arg /lsftmp/g0306332/inter/fc/bin/fortcom compilers: Checking arg -mP1OPT_version=910 compilers: Unknown arg -mP1OPT_version=910 compilers: Checking arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Unknown arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Checking arg -mGLOB_tune_for_fort compilers: Unknown arg -mGLOB_tune_for_fort compilers: Checking arg -mGLOB_use_fort_dope_vector compilers: Unknown arg -mGLOB_use_fort_dope_vector compilers: Checking arg -mP2OPT_static_promotion compilers: Unknown arg -mP2OPT_static_promotion compilers: Checking arg -mP1OPT_print_version=FALSE compilers: Unknown arg -mP1OPT_print_version=FALSE compilers: Checking arg -mP3OPT_use_mspp_call_convention compilers: Unknown arg -mP3OPT_use_mspp_call_convention compilers: Checking arg -mCG_use_gas_got_workaround=F compilers: Unknown arg -mCG_use_gas_got_workaround=F compilers: Checking arg -mP2OPT_align_option_used=TRUE compilers: Unknown arg -mP2OPT_align_option_used=TRUE compilers: Checking arg "-mGLOB_options_string=-o compilers: Unknown arg "-mGLOB_options_string=-o compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -O3 compilers: Unknown arg -O3 compilers: Checking arg -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 compilers: Found library or library directory: -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 compilers: Checking arg -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. compilers: Found library or library directory: -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. compilers: Checking arg -ldl compilers: Found library or library directory: -ldl compilers: Checking arg -lgcc_eh compilers: Found library or library directory: -lgcc_eh compilers: Checking arg -ldl" compilers: Checking arg -mGLOB_position_independent_code compilers: Unknown arg -mGLOB_position_independent_code compilers: Checking arg -mGLOB_preemption_model=3 compilers: Unknown arg -mGLOB_preemption_model=3 compilers: Checking arg -mGLOB_cxx_limited_range=FALSE compilers: Unknown arg -mGLOB_cxx_limited_range=FALSE compilers: Checking arg -mGLOB_as_output_backup_file_name=/tmp/ifortDE8S5Xas_.s compilers: Unknown arg -mGLOB_as_output_backup_file_name=/tmp/ifortDE8S5Xas_.s compilers: Checking arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_IA32_NONE compilers: Unknown arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_IA32_NONE compilers: Checking arg -mP2OPT_subs_out_of_bound=FALSE compilers: Unknown arg -mP2OPT_subs_out_of_bound=FALSE compilers: Checking arg -mIPOPT_ninl_user_level=2 compilers: Unknown arg -mIPOPT_ninl_user_level=2 compilers: Checking arg -mGLOB_opt_level=3 compilers: Unknown arg -mGLOB_opt_level=3 compilers: Checking arg -mIPOPT_activate compilers: Unknown arg -mIPOPT_activate compilers: Checking arg -mP2OPT_hlo_level=2 compilers: Unknown arg -mP2OPT_hlo_level=2 compilers: Checking arg -mP2OPT_hlo compilers: Unknown arg -mP2OPT_hlo compilers: Checking arg -mIPOPT_link compilers: Unknown arg -mIPOPT_link compilers: Checking arg -mIPOPT_ipo_activate compilers: Unknown arg -mIPOPT_ipo_activate compilers: Checking arg -mIPOPT_ipo_mo_activate compilers: Unknown arg -mIPOPT_ipo_mo_activate compilers: Checking arg -mIPOPT_ipo_mo_nfiles=1 compilers: Unknown arg -mIPOPT_ipo_mo_nfiles=1 compilers: Checking arg -mIPOPT_source_files_list=/tmp/ifortVDgZz5lst compilers: Unknown arg -mIPOPT_source_files_list=/tmp/ifortVDgZz5lst compilers: Checking arg -mIPOPT_short_data_info=/tmp/iforttjGMHysdata compilers: Unknown arg -mIPOPT_short_data_info=/tmp/iforttjGMHysdata compilers: Checking arg -mIPOPT_link_script_file=/tmp/ifortTIRAP1script compilers: Unknown arg -mIPOPT_link_script_file=/tmp/ifortTIRAP1script compilers: Checking arg -mIPOPT_global_data compilers: Unknown arg -mIPOPT_global_data compilers: Checking arg "-mIPOPT_link_version=2.14.90.0.4 compilers: Unknown arg "-mIPOPT_link_version=2.14.90.0.4 compilers: Checking arg 20030523" compilers: Unknown arg 20030523 compilers: Checking arg "-mIPOPT_cmdline_link="/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o" compilers: Unknown arg -mIPOPT_cmdline_link="/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o compilers: Checking arg "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o" compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o compilers: Checking arg "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o" compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o compilers: Checking arg "--eh-frame-hdr" compilers: Unknown arg --eh-frame-hdr compilers: Checking arg "-dynamic-linker" compilers: Unknown arg -dynamic-linker compilers: Checking arg "/lib/ld-linux.so.2" compilers: Unknown arg /lib/ld-linux.so.2 compilers: Checking arg "-m" compilers: Unknown arg -m compilers: Checking arg "elf_i386" compilers: Unknown arg elf_i386 compilers: Checking arg "-o" compilers: Unknown arg -o compilers: Checking arg "conftest" compilers: Unknown arg conftest compilers: Checking arg "/lsftmp/g0306332/inter/fc/lib/for_main.o" compilers: Unknown arg /lsftmp/g0306332/inter/fc/lib/for_main.o compilers: Checking arg "conftest.o" compilers: Unknown arg conftest.o compilers: Checking arg "-rpath" compilers: Found -rpath library: "/usr/lib/gcc-lib/i386-pc-linux/3.2.3" compilers: Checking arg "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3" compilers: Checking arg "-rpath" compilers: Found -rpath library: "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." compilers: Checking arg "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." compilers: Checking arg "-ldl" compilers: Checking arg "-lgcc_eh" compilers: Checking arg "-ldl" compilers: Checking arg "-L/lsftmp/g0306332/inter/fc/lib" compilers: Found library or library directory: -L/lsftmp/g0306332/inter/fc/lib compilers: Checking arg "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" compilers: Found library or library directory: -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ compilers: Checking arg "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" compilers: Found library or library directory: -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lifport" compilers: Found library or library directory: -lifport compilers: Checking arg "-lifcore" compilers: Found library or library directory: -lifcore compilers: Checking arg "-limf" compilers: Found library or library directory: -limf compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lm" compilers: Found library or library directory: -lm compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lipgo" compilers: Found library or library directory: -lipgo compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lirc" compilers: Found library or library directory: -lirc compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lc" compilers: Checking arg "-lgcc_s" compilers: Found library or library directory: -lgcc_s compilers: Checking arg "-lgcc" compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lirc_s" compilers: Found library or library directory: -lirc_s compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-ldl" compilers: Checking arg "-lc" compilers: Checking arg "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o" compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o compilers: Checking arg "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o"" compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o compilers: Checking arg -mIPOPT_save_il0 compilers: Unknown arg -mIPOPT_save_il0 compilers: Checking arg -mIPOPT_il_in_obj compilers: Unknown arg -mIPOPT_il_in_obj compilers: Checking arg -mIPOPT_ipo_activate_warn=FALSE compilers: Unknown arg -mIPOPT_ipo_activate_warn=FALSE compilers: Checking arg -mIPOPT_obj_output_file_name=/tmp/ipo_ifort52jqk9.o compilers: Unknown arg -mIPOPT_obj_output_file_name=/tmp/ipo_ifort52jqk9.o compilers: Checking arg "-mGLOB_linker_version=2.14.90.0.4 compilers: Unknown arg "-mGLOB_linker_version=2.14.90.0.4 compilers: Checking arg 20030523" compilers: Unknown arg 20030523 compilers: Checking arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Unknown arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Checking arg -mGLOB_obj_output_file=/tmp/ipo_ifort52jqk9.o compilers: Unknown arg -mGLOB_obj_output_file=/tmp/ipo_ifort52jqk9.o compilers: Checking arg -mP1OPT_source_file_name=/tmp/ipo_ifort52jqk9.f compilers: Unknown arg -mP1OPT_source_file_name=/tmp/ipo_ifort52jqk9.f compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -mIPOPT_object_files=/tmp/ifortpDycsCtxt compilers: Unknown arg -mIPOPT_object_files=/tmp/ifortpDycsCtxt compilers: Checking arg -mIPOPT_mo_unique_name=25168 compilers: Unknown arg -mIPOPT_mo_unique_name=25168 compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib/ld-linux.so.2 compilers: Unknown arg /lib/ld-linux.so.2 compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_i386 compilers: Unknown arg elf_i386 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg /lsftmp/g0306332/inter/fc/lib/for_main.o compilers: Unknown arg /lsftmp/g0306332/inter/fc/lib/for_main.o compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/gcc-lib/i386-pc-linux/3.2.3 compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. compilers: Checking arg -ldl compilers: Checking arg -lgcc_eh compilers: Checking arg -ldl compilers: Checking arg -L/lsftmp/g0306332/inter/fc/lib compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lifport compilers: Checking arg -lifcore compilers: Checking arg -limf compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lm compilers: Found library or library directory: -lm compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lipgo compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lirc compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lc compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lirc_s compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -ldl compilers: Checking arg -lc compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ifortjksFcGgnudirs compilers: Unknown arg /tmp/ifortjksFcGgnudirs compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ifortpDycsCtxt compilers: Unknown arg /tmp/ifortpDycsCtxt compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ifortVDgZz5lst compilers: Unknown arg /tmp/ifortVDgZz5lst compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/iforttjGMHysdata compilers: Unknown arg /tmp/iforttjGMHysdata compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ifortTIRAP1script compilers: Unknown arg /tmp/ifortTIRAP1script compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ipo_ifort52jqk9.o compilers: Unknown arg /tmp/ipo_ifort52jqk9.o compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ifortn6KpXugas compilers: Unknown arg /tmp/ifortn6KpXugas compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ifortDE8S5Xas_.s compilers: Unknown arg /tmp/ifortDE8S5Xas_.s compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ifortZb2nerldashv compilers: Unknown arg /tmp/ifortZb2nerldashv compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ifortPG1KnUgnudirs compilers: Unknown arg /tmp/ifortPG1KnUgnudirs compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/iforthC8Xxnarg compilers: Unknown arg /tmp/iforthC8Xxnarg compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C compilers: Check for Intel PEPCF90 library Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl -lPEPCF90 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl -lPEPCF90 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm sh: Possible ERROR while running linker: /usr/bin/ld: cannot find -lPEPCF90 collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/bin/ld: cannot find -lPEPCF90 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl -lPEPCF90 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Intel PEPCF90 library does not exist compilers: Check that Fortran libraries can be used from C++ Pushing language Cxx sh: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc sh: sh: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc sh: Pushing language C Popping language C sh: g++ -o conftest -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: g++ -o conftest -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: sh: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc sh: Pushing language C Popping language C sh: g++ -o conftest -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: g++ -o conftest -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language Cxx compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:786) TESTING: checkFortranLinkingCxx from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:786) Check that Fortran can be linked against C++ Pushing language Cxx sh: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc sh: Popping language Cxx Pushing language Cxx sh: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc sh: Popping language Cxx Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o cxxobj.o confc.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o cxxobj.o confc.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: cxxobj.o(.gnu.linkonce.d.DW.ref.__gxx_personality_v0+0x0): undefined reference to `__gxx_personality_v0' output: ret = 256 error message = {cxxobj.o(.gnu.linkonce.d.DW.ref.__gxx_personality_v0+0x0): undefined reference to `__gxx_personality_v0' } Pushing language C Popping language C in /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o cxxobj.o confc.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: program main call d1chk() end Popping language FC Pushing language Cxx sh: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc sh: Popping language Cxx Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o cxxobj.o confc.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o cxxobj.o confc.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Popping language FC compilers: Fortran can link C++ functions using the C++ compiler libraries ================================================================================ TEST checkFortran90 from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:821) TESTING: checkFortran90 from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:821) Determine whether the Fortran compiler handles F90 Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran90Interface from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:868) TESTING: checkFortran90Interface from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:868) Check for custom F90 interfaces, such as that provided by PETSc ================================================================================ TEST setupFrameworkCompilers from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:932) TESTING: setupFrameworkCompilers from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:932) ================================================================================ TEST configureLibrary from PETSc.packages.Mathematica(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/Mathematica.py:15) TESTING: configureLibrary from PETSc.packages.Mathematica(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/Mathematica.py:15) Find a Mathematica installation and check if it can work with PETSc ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/fortranCPP.py:26) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/fortranCPP.py:26) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:60) TESTING: checkStdC from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:60) sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 # 26 "/usr/include/string.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/string.h" 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/inclu... ... __s, int __c) __attribute__ ((__pure__)); extern char *rindex (__const char *__s, int __c) __attribute__ ((__pure__)); extern int ffs (int __i) __attribute__ ((__const__)); # 287 "/usr/include/string.h" 3 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__pure__)); # 309 "/usr/include/string.h" 3 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) ; # 379 "/usr/include/string.h" 3 # 4 "conftest.c" 2 sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 # 25 "/usr/include/stdlib.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 26 "/usr/include/stdlib.h" 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/inclu... ... mblen (__const char *__s, size_t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; # 916 "/usr/include/stdlib.h" 3 extern int getloadavg (double __loadavg[], int __nelem) ; # 4 "conftest.c" 2 sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:93) TESTING: checkStat from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:93) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 # 27 "/usr/include/sys/types.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 28 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 28 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/wordsize.h... ... t stat (__const char *__path, struct stat *__statbuf) { return __xstat (3, __path, __statbuf); } extern __inline__ int lstat (__const char *__path, struct stat *__statbuf) { return __lxstat (3, __path, __statbuf); } extern __inline__ int fstat (int __fd, struct stat *__statbuf) { return __fxstat (3, __fd, __statbuf); } extern __inline__ int mknod (__const char *__path, __mode_t __mode, __dev_t __dev) { return __xmknod (1, __path, __mode, &__dev); } # 408 "/usr/include/sys/stat.h" 3 # 6 "conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:128) TESTING: checkSysWait from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:128) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:150) TESTING: checkTime from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:150) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 # 28 "/usr/include/time.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 29 "/usr/include/time.h" 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/std... ... /time.h" 3 extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) ; extern int timer_delete (timer_t __timerid) ; extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) ; extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) ; extern int timer_getoverrun (timer_t __timerid) ; # 413 "/usr/include/time.h" 3 # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 # 22 "/usr/include/sys/time.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 23 "/usr/include/sys/time.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 28 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/wordsize.h" 1... ... it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) ; extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) ; extern int utimes (__const char *__file, __const struct timeval __tvp[2]) ; extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) ; extern int futimes (int __fd, __const struct timeval __tvp[2]) ; # 181 "/usr/include/sys/time.h" 3 # 4 "conftest.c" 2 Defined "HAVE_SYS_TIME_H" to "1" sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:17: dos.h: No such file or directory ret = 256 error message = {conftest.c:3:17: dos.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 # 22 "/usr/include/endian.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 23 "/usr/include/endian.h" 2 3 # 37 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 4 "conftes... ... nftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 # 22 "/usr/include/endian.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 23 "/usr/include/endian.h" 2 3 # 37 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 4 "conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 # 26 "/usr/include/fcntl.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/fcntl.h" 2 3 # 1 "/usr/include/bits/fcntl.h" 1 3 # 25 "/usr/include/bits/fcntl.h" 3 # 1 "/usr/include/sys/types.h" 1 3 # 29 "/usr... ... e; __off_t l_start; __off_t l_len; __pid_t l_pid; }; # 181 "/usr/include/bits/fcntl.h" 3 extern ssize_t readahead (int __fd, __off64_t __offset, size_t __count) ; # 34 "/usr/include/fcntl.h" 2 3 # 63 "/usr/include/fcntl.h" 3 extern int fcntl (int __fd, int __cmd, ...); # 72 "/usr/include/fcntl.h" 3 extern int open (__const char *__file, int __oflag, ...); # 90 "/usr/include/fcntl.h" 3 extern int creat (__const char *__file, __mode_t __mode); # 119 "/usr/include/fcntl.h" 3 extern int lockf (int __fd, int __cmd, __off_t __len); # 173 "/usr/include/fcntl.h" 3 # 4 "conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/float.h" 1 3 # 4 "conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:16: io.h: No such file or directory ret = 256 error message = {conftest.c:3:16: io.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 1 3 # 11 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/syslimits.h" 1 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 1 3 # 132 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 3 # 1 "/usr/include/limits.h" 1 3 # 26 "/usr/include/limits.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 ... ... /include/bits/posix1_lim.h" 1 3 # 130 "/usr/include/bits/posix1_lim.h" 3 # 1 "/usr/include/bits/local_lim.h" 1 3 # 36 "/usr/include/bits/local_lim.h" 3 # 1 "/usr/include/linux/limits.h" 1 3 # 37 "/usr/include/bits/local_lim.h" 2 3 # 131 "/usr/include/bits/posix1_lim.h" 2 3 # 145 "/usr/include/limits.h" 2 3 # 1 "/usr/include/bits/posix2_lim.h" 1 3 # 149 "/usr/include/limits.h" 2 3 # 133 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 2 3 # 8 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/syslimits.h" 2 3 # 12 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 2 3 # 4 "conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 # 46 "/usr/include/malloc.h" 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 151 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 3 typedef int ptrdiff_t; # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 3 typedef unsigned int size_t; # 325 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 3 typedef long int wchar_t; # 47 "/usr/include/malloc.h" 2 3 # 118 "/usr/include/mal... ... e_t malloc_usable_size (void * __ptr) ; extern void malloc_stats (void) ; extern void * malloc_get_state (void) ; extern int malloc_set_state (void * __ptr) ; extern void (*__malloc_initialize_hook) (void); extern void (*__free_hook) (void * __ptr, __const void *); extern void * (*__malloc_hook) (size_t __size, __const void *); extern void * (*__realloc_hook) (void * __ptr, size_t __size, __const void *); extern void * (*__memalign_hook) (size_t __alignment, size_t __size, __const void *); extern void (*__after_morecore_hook) (void); extern void __malloc_check_init (void) ; # 4 "conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 # 26 "/usr/include/pwd.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/pwd.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 28 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/i... ... t passwd **__restrict __result); extern int getpwnam_r (__const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 164 "/usr/include/pwd.h" 3 extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 184 "/usr/include/pwd.h" 3 # 4 "conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/search.h" 1 3 # 23 "/usr/include/search.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 24 "/usr/include/search.h" 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/inclu... ... void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value, int __level); extern void twalk (__const void *__root, __action_fn_t __action); # 165 "/usr/include/search.h" 3 extern void *lfind (__const void *__key, __const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (__const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 4 "conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 # 27 "/usr/include/strings.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 28 "/usr/include/strings.h" 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/in... ... nst void *__s2, size_t __n) __attribute__ ((__pure__)); extern void bcopy (__const void *__src, void *__dest, size_t __n) ; extern void bzero (void *__s, size_t __n) ; extern int ffs (int __i) __attribute__ ((const)); extern char *index (__const char *__s, int __c) __attribute__ ((__pure__)); extern char *rindex (__const char *__s, int __c) __attribute__ ((__pure__)); extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__pure__)); # 4 "conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 # 26 "/usr/include/unistd.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/unistd.h" 2 3 # 171 "/usr/include/unistd.h" 3 # 1 "/usr/include/bits/posix_opt.h" 1 3 # 172 "/usr/include/unistd.h" 2 3 # 186 "... ... int truncate (__const char *__file, __off_t __length) ; # 893 "/usr/include/unistd.h" 3 extern int ftruncate (int __fd, __off_t __length) ; # 909 "/usr/include/unistd.h" 3 extern int getdtablesize (void) ; # 918 "/usr/include/unistd.h" 3 extern int brk (void *__addr) ; extern void *sbrk (intptr_t __delta) ; # 939 "/usr/include/unistd.h" 3 extern long int syscall (long int __sysno, ...) ; # 962 "/usr/include/unistd.h" 3 extern int lockf (int __fd, int __cmd, __off_t __len); # 993 "/usr/include/unistd.h" 3 extern int fdatasync (int __fildes) ; # 1024 "/usr/include/unistd.h" 3 # 4 "conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: machine/endian.h: No such file or directory ret = 256 error message = {conftest.c:3:28: machine/endian.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 # 22 "/usr/include/sys/param.h" 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 1 3 # 11 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/syslimits.h" 1 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 1 3 # 132 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 3 # 1 "/usr/include/limits.h" 1 3 # 26 "/usr/include/limits.h" 3... ... d_descr) - sizeof (__pthread_cond_align_t)]; __pthread_cond_align_t __align; } pthread_cond_t; typedef struct { int __dummy; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef struct { int __m_reserved; int __m_count; _pthread_descr __m_owner; int __m_kind; struct _pthread_fastlock __m_lock; } pthread_mutex_t; typedef struct { int __mutexkind; } pthread_mutexattr_t; typedef int pthread_once_t; # 150 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; # 267 "/usr/include/sys/types.h" 2 3 # 43 "/usr/include/sys/param.h" 2 3 # 4 "conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 # 31 "/usr/include/sys/procfs.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 32 "/usr/include/sys/procfs.h" 2 3 # 1 "/usr/include/sys/time.h" 1 3 # 24 "/usr/include/sys/time.h" 3 # 1 "/usr/include/bits/types.h" 1 ... ... pr_cutime; struct timeval pr_cstime; elf_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned short int pr_uid; unsigned short int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; # 4 "conftest.c" 2 Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 # 22 "/usr/include/sys/resource.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 23 "/usr/include/sys/resource.h" 2 3 # 1 "/usr/include/bits/resource.h" 1 3 # 24 "/usr/include/bits/resource.h" 3 # 1 "/usr/include/... ... resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) ; # 71 "/usr/include/sys/resource.h" 3 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) ; # 89 "/usr/include/sys/resource.h" 3 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) ; extern int getpriority (__priority_which_t __which, id_t __who) ; extern int setpriority (__priority_which_t __which, id_t __who, int __prio) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 # 26 "/usr/include/sys/times.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/sys/times.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 56 "/usr/include/time.h" 3 # 1 "/usr/include/bits/types.h" 1 3 # 28 "/us... ... t64_t; __extension__ typedef unsigned long int __fsfilcnt_t; __extension__ typedef unsigned long long int __fsfilcnt64_t; __extension__ typedef int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; __extension__ typedef int __intptr_t; __extension__ typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 typedef __clock_t clock_t; # 30 "/usr/include/sys/times.h" 2 3 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 # 26 "/usr/include/sys/utsname.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/sys/utsname.h" 2 3 # 1 "/usr/include/bits/utsname.h" 1 3 # 31 "/usr/include/sys/utsname.h" 2 3 # 49 "/usr/include/sys... ... eatures.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/sys/utsname.h" 2 3 # 1 "/usr/include/bits/utsname.h" 1 3 # 31 "/usr/include/sys/utsname.h" 2 3 # 49 "/usr/include/sys/utsname.h" 3 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; # 82 "/usr/include/sys/utsname.h" 3 extern int uname (struct utsname *__name) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 # 26 "/usr/include/string.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/string.h" 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/inclu... ... __s, int __c) __attribute__ ((__pure__)); extern char *rindex (__const char *__s, int __c) __attribute__ ((__pure__)); extern int ffs (int __i) __attribute__ ((__const__)); # 287 "/usr/include/string.h" 3 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__pure__)); # 309 "/usr/include/string.h" 3 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) ; # 379 "/usr/include/string.h" 3 # 4 "conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 # 25 "/usr/include/stdlib.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 26 "/usr/include/stdlib.h" 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/inclu... ... mblen (__const char *__s, size_t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; # 916 "/usr/include/stdlib.h" 3 extern int getloadavg (double __loadavg[], int __nelem) ; # 4 "conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 # 23 "/usr/include/sys/socket.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 24 "/usr/include/sys/socket.h" 2 3 # 1 "/usr/include/sys/uio.h" 1 3 # 24 "/usr/include/sys/uio.h" 3 # 1 "/usr/include/sys/types.h" 1 3 #... ... level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) ; extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) ; extern int listen (int __fd, int __n) ; # 209 "/usr/include/sys/socket.h" 3 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern int shutdown (int __fd, int __how) ; # 231 "/usr/include/sys/socket.h" 3 extern int isfdtype (int __fd, int __fdtype) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 # 26 "/usr/include/sys/wait.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/sys/wait.h" 2 3 # 1 "/usr/include/signal.h" 1 3 # 31 "/usr/include/signal.h" 3 # 1 "/usr/include/bits/sigset.h" 1 3 # 23 "/... ... e/bits/siginfo.h" 1 3 # 25 "/usr/include/bits/siginfo.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 26 "/usr/include/bits/siginfo.h" 2 3 # 140 "/usr/include/sys/wait.h" 2 3 # 151 "/usr/include/sys/wait.h" 3 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options, struct rusage * __usage) ; struct rusage; extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options, struct rusage *__usage) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 # 22 "/usr/include/netinet/in.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 23 "/usr/include/netinet/in.h" 2 3 # 1 "/usr/include/stdint.h" 1 3 # 27 "/usr/include/stdint.h" 3 # 1 "/usr/include/bits/wchar.h" 1 3 # ... ... tern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__const__)); # 1 "/usr/include/bits/byteswap.h" 1 3 # 274 "/usr/include/netinet/in.h" 2 3 # 336 "/usr/include/netinet/in.h" 3 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) ; extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) ; # 364 "/usr/include/netinet/in.h" 3 struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; # 387 "/usr/include/netinet/in.h" 3 # 4 "conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 # 26 "/usr/include/netdb.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/netdb.h" 2 3 # 1 "/usr/include/netinet/in.h" 1 3 # 23 "/usr/include/netinet/in.h" 3 # 1 "/usr/include/stdint.h" 1 3 # 27 "/usr/in... ... __const char *__restrict __service, __const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) ; extern __const char *gai_strerror (int __ecode) ; extern int getnameinfo (__const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, unsigned int __flags); # 662 "/usr/include/netdb.h" 3 # 4 "conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: Direct.h: No such file or directory ret = 256 error message = {conftest.c:3:20: Direct.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 # 28 "/usr/include/time.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 29 "/usr/include/time.h" 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/std... ... /time.h" 3 extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) ; extern int timer_delete (timer_t __timerid) ; extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) ; extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) ; extern int timer_getoverrun (timer_t __timerid) ; # 413 "/usr/include/time.h" 3 # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:22: Ws2tcpip.h: No such file or directory ret = 256 error message = {conftest.c:3:22: Ws2tcpip.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 # 27 "/usr/include/sys/types.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 28 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 28 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/wordsize.h... ... ) - sizeof (_pthread_descr) - sizeof (__pthread_cond_align_t)]; __pthread_cond_align_t __align; } pthread_cond_t; typedef struct { int __dummy; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef struct { int __m_reserved; int __m_count; _pthread_descr __m_owner; int __m_kind; struct _pthread_fastlock __m_lock; } pthread_mutex_t; typedef struct { int __mutexkind; } pthread_mutexattr_t; typedef int pthread_once_t; # 150 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; # 267 "/usr/include/sys/types.h" 2 3 # 4 "conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:22: WindowsX.h: No such file or directory ret = 256 error message = {conftest.c:3:22: WindowsX.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: cxxabi.h: No such file or directory ret = 256 error message = {conftest.c:3:20: cxxabi.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:17: dos.h: No such file or directory ret = 256 error message = {conftest.c:3:17: dos.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 # 22 "/usr/include/endian.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 23 "/usr/include/endian.h" 2 3 # 37 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 4 "conftes... ... nftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 # 22 "/usr/include/endian.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 23 "/usr/include/endian.h" 2 3 # 37 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 4 "conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 # 26 "/usr/include/fcntl.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/fcntl.h" 2 3 # 1 "/usr/include/bits/fcntl.h" 1 3 # 25 "/usr/include/bits/fcntl.h" 3 # 1 "/usr/include/sys/types.h" 1 3 # 29 "/usr... ... e; __off_t l_start; __off_t l_len; __pid_t l_pid; }; # 181 "/usr/include/bits/fcntl.h" 3 extern ssize_t readahead (int __fd, __off64_t __offset, size_t __count) ; # 34 "/usr/include/fcntl.h" 2 3 # 63 "/usr/include/fcntl.h" 3 extern int fcntl (int __fd, int __cmd, ...); # 72 "/usr/include/fcntl.h" 3 extern int open (__const char *__file, int __oflag, ...); # 90 "/usr/include/fcntl.h" 3 extern int creat (__const char *__file, __mode_t __mode); # 119 "/usr/include/fcntl.h" 3 extern int lockf (int __fd, int __cmd, __off_t __len); # 173 "/usr/include/fcntl.h" 3 # 4 "conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/float.h" 1 3 # 4 "conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:16: io.h: No such file or directory ret = 256 error message = {conftest.c:3:16: io.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 1 3 # 11 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/syslimits.h" 1 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 1 3 # 132 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 3 # 1 "/usr/include/limits.h" 1 3 # 26 "/usr/include/limits.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 ... ... /include/bits/posix1_lim.h" 1 3 # 130 "/usr/include/bits/posix1_lim.h" 3 # 1 "/usr/include/bits/local_lim.h" 1 3 # 36 "/usr/include/bits/local_lim.h" 3 # 1 "/usr/include/linux/limits.h" 1 3 # 37 "/usr/include/bits/local_lim.h" 2 3 # 131 "/usr/include/bits/posix1_lim.h" 2 3 # 145 "/usr/include/limits.h" 2 3 # 1 "/usr/include/bits/posix2_lim.h" 1 3 # 149 "/usr/include/limits.h" 2 3 # 133 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 2 3 # 8 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/syslimits.h" 2 3 # 12 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 2 3 # 4 "conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 # 46 "/usr/include/malloc.h" 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 151 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 3 typedef int ptrdiff_t; # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 3 typedef unsigned int size_t; # 325 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 3 typedef long int wchar_t; # 47 "/usr/include/malloc.h" 2 3 # 118 "/usr/include/mal... ... e_t malloc_usable_size (void * __ptr) ; extern void malloc_stats (void) ; extern void * malloc_get_state (void) ; extern int malloc_set_state (void * __ptr) ; extern void (*__malloc_initialize_hook) (void); extern void (*__free_hook) (void * __ptr, __const void *); extern void * (*__malloc_hook) (size_t __size, __const void *); extern void * (*__realloc_hook) (void * __ptr, size_t __size, __const void *); extern void * (*__memalign_hook) (size_t __alignment, size_t __size, __const void *); extern void (*__after_morecore_hook) (void); extern void __malloc_check_init (void) ; # 4 "conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 # 26 "/usr/include/pwd.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/pwd.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 28 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/i... ... t passwd **__restrict __result); extern int getpwnam_r (__const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 164 "/usr/include/pwd.h" 3 extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 184 "/usr/include/pwd.h" 3 # 4 "conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/search.h" 1 3 # 23 "/usr/include/search.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 24 "/usr/include/search.h" 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/inclu... ... void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value, int __level); extern void twalk (__const void *__root, __action_fn_t __action); # 165 "/usr/include/search.h" 3 extern void *lfind (__const void *__key, __const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (__const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 4 "conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 # 27 "/usr/include/strings.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 28 "/usr/include/strings.h" 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/in... ... nst void *__s2, size_t __n) __attribute__ ((__pure__)); extern void bcopy (__const void *__src, void *__dest, size_t __n) ; extern void bzero (void *__s, size_t __n) ; extern int ffs (int __i) __attribute__ ((const)); extern char *index (__const char *__s, int __c) __attribute__ ((__pure__)); extern char *rindex (__const char *__s, int __c) __attribute__ ((__pure__)); extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__pure__)); # 4 "conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 # 26 "/usr/include/unistd.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/unistd.h" 2 3 # 171 "/usr/include/unistd.h" 3 # 1 "/usr/include/bits/posix_opt.h" 1 3 # 172 "/usr/include/unistd.h" 2 3 # 186 "... ... int truncate (__const char *__file, __off_t __length) ; # 893 "/usr/include/unistd.h" 3 extern int ftruncate (int __fd, __off_t __length) ; # 909 "/usr/include/unistd.h" 3 extern int getdtablesize (void) ; # 918 "/usr/include/unistd.h" 3 extern int brk (void *__addr) ; extern void *sbrk (intptr_t __delta) ; # 939 "/usr/include/unistd.h" 3 extern long int syscall (long int __sysno, ...) ; # 962 "/usr/include/unistd.h" 3 extern int lockf (int __fd, int __cmd, __off_t __len); # 993 "/usr/include/unistd.h" 3 extern int fdatasync (int __fildes) ; # 1024 "/usr/include/unistd.h" 3 # 4 "conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: machine/endian.h: No such file or directory ret = 256 error message = {conftest.c:3:28: machine/endian.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 # 22 "/usr/include/sys/param.h" 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 1 3 # 11 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/syslimits.h" 1 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 1 3 # 132 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/limits.h" 3 # 1 "/usr/include/limits.h" 1 3 # 26 "/usr/include/limits.h" 3... ... d_descr) - sizeof (__pthread_cond_align_t)]; __pthread_cond_align_t __align; } pthread_cond_t; typedef struct { int __dummy; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef struct { int __m_reserved; int __m_count; _pthread_descr __m_owner; int __m_kind; struct _pthread_fastlock __m_lock; } pthread_mutex_t; typedef struct { int __mutexkind; } pthread_mutexattr_t; typedef int pthread_once_t; # 150 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; # 267 "/usr/include/sys/types.h" 2 3 # 43 "/usr/include/sys/param.h" 2 3 # 4 "conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 # 31 "/usr/include/sys/procfs.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 32 "/usr/include/sys/procfs.h" 2 3 # 1 "/usr/include/sys/time.h" 1 3 # 24 "/usr/include/sys/time.h" 3 # 1 "/usr/include/bits/types.h" 1 ... ... pr_cutime; struct timeval pr_cstime; elf_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned short int pr_uid; unsigned short int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; # 4 "conftest.c" 2 Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 # 22 "/usr/include/sys/resource.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 23 "/usr/include/sys/resource.h" 2 3 # 1 "/usr/include/bits/resource.h" 1 3 # 24 "/usr/include/bits/resource.h" 3 # 1 "/usr/include/... ... resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) ; # 71 "/usr/include/sys/resource.h" 3 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) ; # 89 "/usr/include/sys/resource.h" 3 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) ; extern int getpriority (__priority_which_t __which, id_t __who) ; extern int setpriority (__priority_which_t __which, id_t __who, int __prio) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 # 26 "/usr/include/sys/times.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/sys/times.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 56 "/usr/include/time.h" 3 # 1 "/usr/include/bits/types.h" 1 3 # 28 "/us... ... t64_t; __extension__ typedef unsigned long int __fsfilcnt_t; __extension__ typedef unsigned long long int __fsfilcnt64_t; __extension__ typedef int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; __extension__ typedef int __intptr_t; __extension__ typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 typedef __clock_t clock_t; # 30 "/usr/include/sys/times.h" 2 3 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 # 26 "/usr/include/sys/utsname.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/sys/utsname.h" 2 3 # 1 "/usr/include/bits/utsname.h" 1 3 # 31 "/usr/include/sys/utsname.h" 2 3 # 49 "/usr/include/sys... ... eatures.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/sys/utsname.h" 2 3 # 1 "/usr/include/bits/utsname.h" 1 3 # 31 "/usr/include/sys/utsname.h" 2 3 # 49 "/usr/include/sys/utsname.h" 3 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; # 82 "/usr/include/sys/utsname.h" 3 extern int uname (struct utsname *__name) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 # 26 "/usr/include/string.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/string.h" 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/inclu... ... __s, int __c) __attribute__ ((__pure__)); extern char *rindex (__const char *__s, int __c) __attribute__ ((__pure__)); extern int ffs (int __i) __attribute__ ((__const__)); # 287 "/usr/include/string.h" 3 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__pure__)); # 309 "/usr/include/string.h" 3 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) ; # 379 "/usr/include/string.h" 3 # 4 "conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 # 25 "/usr/include/stdlib.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 26 "/usr/include/stdlib.h" 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/inclu... ... mblen (__const char *__s, size_t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; # 916 "/usr/include/stdlib.h" 3 extern int getloadavg (double __loadavg[], int __nelem) ; # 4 "conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 # 23 "/usr/include/sys/socket.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 24 "/usr/include/sys/socket.h" 2 3 # 1 "/usr/include/sys/uio.h" 1 3 # 24 "/usr/include/sys/uio.h" 3 # 1 "/usr/include/sys/types.h" 1 3 #... ... level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) ; extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) ; extern int listen (int __fd, int __n) ; # 209 "/usr/include/sys/socket.h" 3 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern int shutdown (int __fd, int __how) ; # 231 "/usr/include/sys/socket.h" 3 extern int isfdtype (int __fd, int __fdtype) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 # 26 "/usr/include/sys/wait.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/sys/wait.h" 2 3 # 1 "/usr/include/signal.h" 1 3 # 31 "/usr/include/signal.h" 3 # 1 "/usr/include/bits/sigset.h" 1 3 # 23 "/... ... e/bits/siginfo.h" 1 3 # 25 "/usr/include/bits/siginfo.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 26 "/usr/include/bits/siginfo.h" 2 3 # 140 "/usr/include/sys/wait.h" 2 3 # 151 "/usr/include/sys/wait.h" 3 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options, struct rusage * __usage) ; struct rusage; extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options, struct rusage *__usage) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 # 22 "/usr/include/netinet/in.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 23 "/usr/include/netinet/in.h" 2 3 # 1 "/usr/include/stdint.h" 1 3 # 27 "/usr/include/stdint.h" 3 # 1 "/usr/include/bits/wchar.h" 1 3 # ... ... tern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__const__)); # 1 "/usr/include/bits/byteswap.h" 1 3 # 274 "/usr/include/netinet/in.h" 2 3 # 336 "/usr/include/netinet/in.h" 3 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) ; extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) ; # 364 "/usr/include/netinet/in.h" 3 struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; # 387 "/usr/include/netinet/in.h" 3 # 4 "conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 # 26 "/usr/include/netdb.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/netdb.h" 2 3 # 1 "/usr/include/netinet/in.h" 1 3 # 23 "/usr/include/netinet/in.h" 3 # 1 "/usr/include/stdint.h" 1 3 # 27 "/usr/in... ... __const char *__restrict __service, __const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) ; extern __const char *gai_strerror (int __ecode) ; extern int getnameinfo (__const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, unsigned int __flags); # 662 "/usr/include/netdb.h" 3 # 4 "conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: Direct.h: No such file or directory ret = 256 error message = {conftest.c:3:20: Direct.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 # 28 "/usr/include/time.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 29 "/usr/include/time.h" 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/std... ... /time.h" 3 extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) ; extern int timer_delete (timer_t __timerid) ; extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) ; extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) ; extern int timer_getoverrun (timer_t __timerid) ; # 413 "/usr/include/time.h" 3 # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:22: Ws2tcpip.h: No such file or directory ret = 256 error message = {conftest.c:3:22: Ws2tcpip.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 # 27 "/usr/include/sys/types.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 28 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 28 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/wordsize.h... ... ) - sizeof (_pthread_descr) - sizeof (__pthread_cond_align_t)]; __pthread_cond_align_t __align; } pthread_cond_t; typedef struct { int __dummy; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef struct { int __m_reserved; int __m_count; _pthread_descr __m_owner; int __m_kind; struct _pthread_fastlock __m_lock; } pthread_mutex_t; typedef struct { int __mutexkind; } pthread_mutexattr_t; typedef int pthread_once_t; # 150 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; # 267 "/usr/include/sys/types.h" 2 3 # 4 "conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:22: WindowsX.h: No such file or directory ret = 256 error message = {conftest.c:3:22: WindowsX.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: cxxabi.h: No such file or directory ret = 256 error message = {conftest.c:3:20: cxxabi.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST checkRecursiveMacros from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:158) TESTING: checkRecursiveMacros from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:158) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: ================================================================================ TEST checkMemcmp from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:79) TESTING: checkMemcmp from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:79) Check for 8-bit clean memcmp sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: ================================================================================ TEST checkSysinfo from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:102) TESTING: checkSysinfo from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:102) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for function sysinfo sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_SYSINFO" to "1" Checking for header: linux/kernel.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/linux/kernel.h" 1 3 # 10 "/usr/include/linux/kernel.h" 3 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long f... ... # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/linux/kernel.h" 1 3 # 10 "/usr/include/linux/kernel.h" 3 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 4 "conftest.c" 2 Defined "HAVE_LINUX_KERNEL_H" to "1" Checking for header: sys/sysinfo.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/sysinfo.h" 1 3 # 22 "/usr/include/sys/sysinfo.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 23 "/usr/include/sys/sysinfo.h" 2 3 # 1 "/usr/include/linux/kernel.h" 1 3 # 10 "/usr/include/linux/kernel.h" 3 struct sysinfo { ... ... ng freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 26 "/usr/include/sys/sysinfo.h" 2 3 extern int sysinfo (struct sysinfo *__info) ; extern int get_nprocs_conf (void) ; extern int get_nprocs (void) ; extern long int get_phys_pages (void) ; extern long int get_avphys_pages (void) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c:13:4: #error "Cannot check sysinfo without special headers" conftest.c: In function `main': conftest.c:17: warning: implicit declaration of function `sysinfo' } Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } ================================================================================ TEST checkVPrintf from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:125) Checking for function vprintf sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_VPRINTF" to "1" sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:7: warning: `Argp' might be used uninitialized in this function } Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } ================================================================================ TEST checkSignalHandlerType from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:132) TESTING: checkSignalHandlerType from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:132) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx sh: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc sh: Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:142) TESTING: checkFreeReturnType from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:142) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:6: void value not ignored as it ought to be } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `sbreak' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `sbreak' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `task_info' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `task_info' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `_access' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `_access' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `_getcwd' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `_getcwd' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : the `getwd' function is dangerous and should not be used. output: error message = {conftest.o(.text+0x17): In function `main': : the `getwd' function is dangerous and should not be used. } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getwd) || defined (__stub___getwd) choke me #else getwd(); #endif ; return 0; } Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function `memmove' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_SIGSET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `_sleep' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `_sleep' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `_snprintf' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `_snprintf' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `_fullpath' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `_fullpath' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `_lseek' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `_lseek' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `stricmp' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `stricmp' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function `bzero' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_bzero) || defined (__stub___bzero) choke me #else bzero(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `_intel_fast_memcpy' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `_intel_fast_memcpy' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `_intel_fast_memset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `_intel_fast_memset' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `_access' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `_access' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `_getcwd' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `_getcwd' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : the `getwd' function is dangerous and should not be used. output: error message = {conftest.o(.text+0x17): In function `main': : the `getwd' function is dangerous and should not be used. } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getwd) || defined (__stub___getwd) choke me #else getwd(); #endif ; return 0; } Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function `memmove' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_SIGSET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `_sleep' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `_sleep' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `_snprintf' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `_snprintf' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `_fullpath' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `_fullpath' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `_lseek' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `_lseek' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `stricmp' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `stricmp' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function `bzero' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_bzero) || defined (__stub___bzero) choke me #else bzero(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `_intel_fast_memcpy' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `_intel_fast_memcpy' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `_intel_fast_memset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `_intel_fast_memset' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `sbreak' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `sbreak' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `task_info' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `task_info' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: sigfpe.h: No such file or directory ret = 256 error message = {conftest.c:3:20: sigfpe.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:19: fpxcp.h: No such file or directory ret = 256 error message = {conftest.c:3:19: fpxcp.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:27: floatingpoint.h: No such file or directory ret = 256 error message = {conftest.c:3:27: floatingpoint.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/fortranCommandLine.py:26) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/fortranCommandLine.py:26) Check for the mechanism to retrieve command line arguments in Fortran Pushing language C Checking for function _gfortran_iargc sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `_gfortran_iargc' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `_gfortran_iargc' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _gfortran_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) choke me #else _gfortran_iargc(); #endif ; return 0; } Checking for function ipxfargc_ sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm sh: Defined "HAVE_IPXFARGC_" to "1" Defined "HAVE_PXFGETARG_NEW" to "1" Popping language C ================================================================================ TEST checkSizeTypes from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:44) TESTING: checkSizeTypes from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:44) Checks for types associated with sizes, such as size_t. Checking for type: size_t sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:49) TESTING: checkFileTypes from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:49) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkPID from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:55) TESTING: checkPID from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:55) Checks for pid_t, and defines it if necessary Checking for type: pid_t sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:59) TESTING: checkUID from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:59) Checks for uid_t and gid_t, and defines them if necessary sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 sys/types.h ================================================================================ TEST checkSignal from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:66) TESTING: checkSignal from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:66) Checks the return type of signal() and defines RETSIGTYPE to that type name sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:87) TESTING: checkC99Complex from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:87) Check for complex numbers in in C99 std sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `x' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { double complex x; ; return 0; } Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:96) TESTING: checkCxxComplex from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:96) Check for complex numbers in namespace std Pushing language Cxx sh: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc sh: Possible ERROR while running compiler: error message = {conftest.cc: In function `int main()': conftest.cc:6: warning: unused variable `std::complex x' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language C Popping language C sh: g++ -o conftest -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: g++ -o conftest -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:117) TESTING: checkFortranKind from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:117) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F sh: Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:129) TESTING: checkFortranDReal from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:129) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -O3 conftest.F sh: Possible ERROR while running compiler: error message = {fortcom: Warning: conftest.F, line 3: This argument's data type is incompatible with this intrinsic procedure; procedure assumed EXTERNAL. [DREAL] d = dreal(3.0) ----------------^ } Source: program main double precision d d = dreal(3.0) end Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x35): In function `MAIN__': : undefined reference to `dreal_' output: ret = 256 error message = {conftest.o(.text+0x35): In function `MAIN__': : undefined reference to `dreal_' } Pushing language C Popping language C in /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -O3 conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: program main double precision d d = dreal(3.0) end Defined "MISSING_DREAL" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:137) TESTING: checkConst from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:137) Checks for working const, and if not found defines it to empty string sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:27: warning: `t' might be used uninitialized in this function conftest.c:46: warning: `b' might be used uninitialized in this function } Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:193) TESTING: checkEndian from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:193) If the machine is big endian, defines WORDS_BIGENDIAN sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:11: `not' undeclared (first use in this function) conftest.c:11: (Each undeclared identifier is reported only once conftest.c:11: for each function it appears in.) conftest.c:11: syntax error before "big" } Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_VOID_P" to "4" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_LONG" to "4" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:288) TESTING: checkBitsPerByte from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:288) Determine the nubmer of bits per byte and define BITS_PER_BYTE sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST configureScalarType from PETSc.utilities.scalarTypes(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/scalarTypes.py:30) TESTING: configureScalarType from PETSc.utilities.scalarTypes(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/scalarTypes.py:30) Choose between real and complex numbers Scalar type is real ================================================================================ TEST configurePrecision from PETSc.utilities.scalarTypes(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/scalarTypes.py:46) TESTING: configurePrecision from PETSc.utilities.scalarTypes(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/scalarTypes.py:46) Set the default real number precision for PETSc objects Precision is double ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -lsocket -lnsl -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -lsocket -lnsl -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -lsocket -lnsl -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -lfpe -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -lfpe -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -lfpe -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -lsocket -lnsl -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -lsocket -lnsl -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -lsocket -lnsl -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -lfpe -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -lfpe -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -lfpe -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST checkMath from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:177) TESTING: checkMath from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:177) Check for sin() in libm, the math library Checking for functions ['sin', 'floor', 'log10', 'pow'] in library [''] [] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:7: warning: `x' might be used uninitialized in this function } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); int main() { double x; sin(x); ; return 0; } Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Popping language C Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:7: warning: `x' might be used uninitialized in this function } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double floor(double); int main() { double x; floor(x); ; return 0; } Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Popping language C Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:7: warning: `x' might be used uninitialized in this function } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double log10(double); int main() { double x; log10(x); ; return 0; } Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Popping language C Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:7: warning: `x' might be used uninitialized in this function } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double pow(double, double); int main() { double x,y ; y = pow(x, x); ; return 0; } Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:193) TESTING: checkMathErf from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:193) Check for erf() in libm, the math library Checking for functions ['erf'] in library [] [] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:7: warning: `x' might be used uninitialized in this function } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); int main() { double x; erf(x); ; return 0; } Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkDynamic from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:202) TESTING: checkDynamic from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:202) Check for the header and libraries necessary for dynamic library manipulation Checking for functions ['dlopen'] in library ['dl'] [] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -ldl -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -ldl -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Popping language C Checking for header: dlfcn.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 # 23 "/usr/include/dlfcn.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 24 "/usr/include/dlfcn.h" 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/... ... " 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 3 typedef unsigned int size_t; # 26 "/usr/include/dlfcn.h" 2 3 # 1 "/usr/include/bits/dlfcn.h" 1 3 # 29 "/usr/include/dlfcn.h" 2 3 # 45 "/usr/include/dlfcn.h" 3 extern void *dlopen (__const char *__file, int __mode) ; extern int dlclose (void *__handle) ; extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) ; # 71 "/usr/include/dlfcn.h" 3 extern char *dlerror (void) ; # 157 "/usr/include/dlfcn.h" 3 # 4 "conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST alternateConfigureLibrary from config.packages.Boost(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/package.py:355) TESTING: alternateConfigureLibrary from config.packages.Boost(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/package.py:355) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureLibrary from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:384) TESTING: configureLibrary from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:384) ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root (HPUX) ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libveclib.a'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lveclib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lveclib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lveclib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root (F2C) ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libf2cblas.a'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf2cblas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf2cblas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/bin/ld: cannot find -lf2cblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/bin/ld: cannot find -lf2cblas collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf2cblas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libfblas.a'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lfblas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lfblas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/bin/ld: cannot find -lfblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/bin/ld: cannot find -lfblas collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lfblas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified ATLAS Linux installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libcblas.a', '/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_LIBCBLAS" to "1" Defined "HAVE_LIBF77BLAS" to "1" Defined "HAVE_LIBATLAS" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/lsftmp/g0306332/inter/mkl/liblapack.a'] ['/lsftmp/g0306332/inter/mkl/libcblas.a', '/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x9): In function `xerbla_': : undefined reference to `s_wsfe' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x1c): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x2f): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x34): In function `xerbla_': : undefined reference to `e_wsfe' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x43): In function `xerbla_': : undefined reference to `s_stop' collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x9): In function `xerbla_': : undefined reference to `s_wsfe' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x1c): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x2f): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x34): In function `xerbla_': : undefined reference to `e_wsfe' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x43): In function `xerbla_': : undefined reference to `s_stop' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Popping language C Checking for functions ['dgeev'] in library ['/lsftmp/g0306332/inter/mkl/liblapack.a'] ['/lsftmp/g0306332/inter/mkl/libcblas.a', '/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `dgeev_' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `dgeev_' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified ATLAS Linux installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_LIBF77BLAS" to "1" Defined "HAVE_LIBATLAS" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/lsftmp/g0306332/inter/mkl/liblapack.a'] ['/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../liblapack.a(ATL_dgetrs.o)(.text+0xa7): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../liblapack.a(ATL_dgetrs.o)(.text+0xd7): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../liblapack.a(ATL_dgetrs.o)(.text+0x112): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../liblapack.a(ATL_dgetrs.o)(.text+0x142): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../liblapack.a(ATL_dgetrs.o)(.text+0x1b9): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../liblapack.a(ATL_dgetrs.o)(.text+0x229): more undefined references to `cblas_dtrsm' follow /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x9): In function `xerbla_': : undefined reference to `s_wsfe' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x1c): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x2f): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x34): In function `xerbla_': : undefined reference to `e_wsfe' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x43): In function `xerbla_': : undefined reference to `s_stop' collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../liblapack.a(ATL_dgetrs.o)(.text+0xa7): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../liblapack.a(ATL_dgetrs.o)(.text+0xd7): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../liblapack.a(ATL_dgetrs.o)(.text+0x112): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../liblapack.a(ATL_dgetrs.o)(.text+0x142): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../liblapack.a(ATL_dgetrs.o)(.text+0x1b9): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../liblapack.a(ATL_dgetrs.o)(.text+0x229): more undefined references to `cblas_dtrsm' follow /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x9): In function `xerbla_': : undefined reference to `s_wsfe' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x1c): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x2f): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x34): In function `xerbla_': : undefined reference to `e_wsfe' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../libf77blas.a(xerbla.o)(.text+0x43): In function `xerbla_': : undefined reference to `s_stop' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Popping language C Checking for functions ['dgeev'] in library ['/lsftmp/g0306332/inter/mkl/liblapack.a'] ['/lsftmp/g0306332/inter/mkl/libf77blas.a', '/lsftmp/g0306332/inter/mkl/libatlas.a', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `dgeev_' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `dgeev_' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -latlas -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified AMD ACML lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/libacml.a'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib -L/lsftmp/g0306332/inter/mkl/lib -lacml -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib -L/lsftmp/g0306332/inter/mkl/lib -lacml -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/bin/ld: cannot find -lacml collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/bin/ld: cannot find -lacml collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib -L/lsftmp/g0306332/inter/mkl/lib -lacml -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-x86 lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'pthread'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_def -lguide -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_def -lguide -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/bin/ld: cannot find -lmkl_lapack collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/bin/ld: cannot find -lmkl_lapack collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_def -lguide -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-ia64 lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libmkl_lapack.a', 'libmkl_ipf.a', 'guide', 'pthread'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ipf -lguide -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ipf -lguide -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/bin/ld: cannot find -lmkl_lapack collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/bin/ld: cannot find -lmkl_lapack collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ipf -lguide -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-em64t lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libmkl_lapack.a', 'libmkl_em64t.a', 'guide', 'pthread'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_em64t -lguide -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_em64t -lguide -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/bin/ld: cannot find -lmkl_lapack collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/bin/ld: cannot find -lmkl_lapack collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_em64t -lguide -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Mac-x86 lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/libmkl_lapack.a', 'libmkl_ia32.a', 'guide'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ia32 -lguide -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ia32 -lguide -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/bin/ld: cannot find -lmkl_lapack collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/bin/ld: cannot find -lmkl_lapack collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl -L/lsftmp/g0306332/inter/mkl -lmkl_lapack -lmkl_ia32 -lguide -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-x86 installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'pthread'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `vslDeleteStream' /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `viRngUniformBits' /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `vslNewStream' collect2: ld returned 1 exit status output: ret = 256 error message = {/lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `vslDeleteStream' /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `viRngUniformBits' /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `vslNewStream' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-x86 installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C ================================================================================ TEST checkESSL from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:434) TESTING: checkESSL from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:434) Check for the IBM ESSL library Checking for functions ['iessl'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `iessl' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `iessl' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); int main() { iessl() ; return 0; } Popping language C ================================================================================ TEST checkPESSL from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:440) TESTING: checkPESSL from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:440) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions ['pdgemm'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] [] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `pdgemm' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `pdgemm' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pdgemm(); int main() { pdgemm() ; return 0; } Popping language C ================================================================================ TEST checkMissing from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:446) TESTING: checkMissing from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:446) Check for missing LAPACK routines Checking for functions ['dgesvd'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dgeev'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dgetrf'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dpotrf'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C Checking for functions ['dpotrs'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'vml', 'pthread'] ['-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-ldl', '-lgcc_eh', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.."', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lifport', '-lifcore', '-limf', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..', '-lm'] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lvml -lpthread -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.." -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lm -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_DEF" to "1" Popping language C ================================================================================ TEST configureTimers from PETSc.utilities.timer(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_GETCLOCK PETSC_USE_DCLOCK PETSC_USE_NT_TIME. Checking for functions ['MPI_CRAY_barrier'] in library [''] [] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `MPI_CRAY_barrier' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `MPI_CRAY_barrier' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); int main() { MPI_CRAY_barrier() ; return 0; } Popping language C Cray-MPI test failure ================================================================================ TEST alternateConfigureLibrary from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:195) TESTING: alternateConfigureLibrary from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:195) Setup MPIUNI, our uniprocessor version of MPI Defined "HAVE_MPIUNI" to "1" Defined make macro "MPIRUN" to "${PETSC_DIR}/bin/mpirun.uni" Defined "HAVE_MPI_COMM_F2C" to "1" Defined "HAVE_MPI_COMM_C2F" to "1" Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:35) TESTING: configureMissingDefines from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:35) Checks for limits sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:45) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:45) Checks if u_short is undefined sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `foo' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:51) TESTING: configureMissingFunctions from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:51) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:71) TESTING: configureMissingSignals from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:71) Check for missing signals, and define MISSING_ if necessary sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: ================================================================================ TEST configureMissingPrototypes from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:88) TESTING: configureMissingPrototypes from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:88) sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:14: warning: unused variable `err' } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Pushing language Cxx sh: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -Wwrite-strings -O -fPIC conftest.cc sh: Possible ERROR while running compiler: error message = {conftest.cc: In function `int main()': conftest.cc:14: warning: unused variable `int err' } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Pushing language C Popping language C sh: g++ -o conftest -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: g++ -o conftest -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Popping language Cxx ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:110) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:110) ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/libraryOptions.py:46) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/libraryOptions.py:46) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Checking for functions ['bgl_perfctr_void'] in library [''] [] Pushing language C sh: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c Executing: gcc -c -o conftest.o -fPIC -Wall -Wwrite-strings -O conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Executing: gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x17): In function `main': : undefined reference to `bgl_perfctr_void' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x17): In function `main': : undefined reference to `bgl_perfctr_void' collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o conftest -fPIC -Wall -Wwrite-strings -O conftest.o -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -lstdc++ -lgcc_s -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3 -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../.. -ldl -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); int main() { bgl_perfctr_void() ; return 0; } Popping language C BGL/IBM test failure Defined "USE_32BIT_INT" to "1" ================================================================================ TEST configureISColorValueType from PETSc.utilities.libraryOptions(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/libraryOptions.py:98) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/libraryOptions.py:98) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_CHAR" Defined "IS_COLORING_MAX" to "255" Defined "IS_COLOR_VALUE_TYPE" to "char" ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Sieve(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Sieve(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PARTY(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Triangle(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Triangle(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spooles(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.spooles(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Matlab(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sprng(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.sprng(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Chaco(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ml(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.ml(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.TetGen(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.TetGen(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spai(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.spai(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need Sowing ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.babel(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.babel(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ParMetis(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.ParMetis(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Prometheus(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Prometheus(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.UMFPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.UMFPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ccafe(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.ccafe(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.fftw(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.fftw(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.blacs(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.blacs(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SCALAPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.SCALAPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MUMPS(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.MUMPS(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need c2html ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.FIAT(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.FIAT(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sundials(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.sundials(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MPE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.MPE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ********************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): --------------------------------------------------------------------------------------- Cannot use hypre with MPIUNI, you need a real MPI ********************************************************************************* File "./config/configure.py", line 175, in petsc_configure framework.configure(out = sys.stdout) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/framework.py", line 876, in configure child.configure() File "/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py", line 360, in configure raise RuntimeError('Cannot use '+self.name+' with MPIUNI, you need a real MPI') ================================================================================= ================================================================================= Previous configure logs below ================================================================================= Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.guess Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.guess sh: i686-pc-linux-gnu sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.sub i686-pc-linux-gnu Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.sub i686-pc-linux-gnu sh: i686-pc-linux-gnu ================================================================================ ================================================================================ Starting Configure Run at Mon Feb 12 10:18:00 2007 Configure Options: --with-fc=/lsftmp/g0306332/inter/fc/bin/ifort --with-blas-lapack-dir=/lsftmp/g0306332/inter/mkl/ --with-mpi=0 --with-x=0 --with-shared --with-debugging=0 --download-hypre=1 --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions Working directory: /nas/lsftmp/g0306332/petsc-2.3.2-p8 Python version: 2.2.3 (#1, Sep 30 2004, 22:31:19) [GCC 3.2.3 20030502 (Red Hat Linux 3.2.3-42)] ================================================================================ Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/framework.py:807) TESTING: configureExternalPackagesDir from config.framework(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/framework.py:807) ================================================================================ TEST configureLibrary from PETSc.packages.PVODE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.PVODE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/PVODE.py:10) Find a PVODE installation and check if it can work with PETSc ================================================================================ TEST configureLibrary from PETSc.packages.NetCDF(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/NetCDF.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/NetCDF.py:10) Find a NetCDF installation and check if it can work with PETSc ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /opt/mpich/myrinet/intel/bin/gdb...not found Checking for program /opt/gridengine/bin/glinux/gdb...not found Checking for program /usr/java/jdk1.5.0/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/globus/bin/gdb...not found Checking for program /opt/globus/sbin/gdb...not found Checking for program /usr/lsf6/bin/gdb...not found Checking for program /opt/mpich/myrinet/intel/bin/gdb...not found Checking for program /opt/gridengine/bin/glinux/gdb...not found Checking for program /usr/kerberos/bin/gdb...not found Checking for program /usr/java/jdk1.5.0/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /usr/lsf6/bin/gdb...not found Checking for program /usr/lsf6/etc/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /opt/mpich/myrinet/intel/bin/dbx...not found Checking for program /opt/gridengine/bin/glinux/dbx...not found Checking for program /usr/java/jdk1.5.0/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/globus/bin/dbx...not found Checking for program /opt/globus/sbin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /opt/mpich/myrinet/intel/bin/dbx...not found Checking for program /opt/gridengine/bin/glinux/dbx...not found Checking for program /usr/kerberos/bin/dbx...not found Checking for program /usr/java/jdk1.5.0/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /usr/lsf6/etc/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /app1/linux/amber8-2/exe/dbx...not found Checking for program /opt/ganglia/bin/dbx...not found Checking for program /opt/rocks/bin/dbx...not found Checking for program /opt/rocks/sbin/dbx...not found Checking for program /app1/linux/bin/dbx...not found Checking for program /app1/common/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /app1/linux/amber8-2/exe/dbx...not found Checking for program /opt/ganglia/bin/dbx...not found Checking for program /opt/rocks/bin/dbx...not found Checking for program /opt/rocks/sbin/dbx...not found Checking for program /app1/linux/bin/dbx...not found Checking for program /app1/common/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /home/enduser/g0306332/dbx...not found Checking for program /opt/mpich/myrinet/intel/bin/xdb...not found Checking for program /opt/gridengine/bin/glinux/xdb...not found Checking for program /usr/java/jdk1.5.0/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/globus/bin/xdb...not found Checking for program /opt/globus/sbin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /opt/mpich/myrinet/intel/bin/xdb...not found Checking for program /opt/gridengine/bin/glinux/xdb...not found Checking for program /usr/kerberos/bin/xdb...not found Checking for program /usr/java/jdk1.5.0/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /usr/lsf6/etc/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /app1/linux/amber8-2/exe/xdb...not found Checking for program /opt/ganglia/bin/xdb...not found Checking for program /opt/rocks/bin/xdb...not found Checking for program /opt/rocks/sbin/xdb...not found Checking for program /app1/linux/bin/xdb...not found Checking for program /app1/common/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /app1/linux/amber8-2/exe/xdb...not found Checking for program /opt/ganglia/bin/xdb...not found Checking for program /opt/rocks/bin/xdb...not found Checking for program /opt/rocks/sbin/xdb...not found Checking for program /app1/linux/bin/xdb...not found Checking for program /app1/common/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /home/enduser/g0306332/xdb...not found ================================================================================ TEST configureMake from PETSc.utilities.Make(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Make.py:21) TESTING: configureMake from PETSc.utilities.Make(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Make.py:21) Check various things about make Checking for program /opt/mpich/myrinet/intel/bin/make...not found Checking for program /opt/gridengine/bin/glinux/make...not found Checking for program /usr/java/jdk1.5.0/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/globus/bin/make...not found Checking for program /opt/globus/sbin/make...not found Checking for program /usr/lsf6/bin/make...not found Checking for program /opt/mpich/myrinet/intel/bin/make...not found Checking for program /opt/gridengine/bin/glinux/make...not found Checking for program /usr/kerberos/bin/make...not found Checking for program /usr/java/jdk1.5.0/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /usr/lsf6/bin/make...not found Checking for program /usr/lsf6/etc/make...not found Checking for program /usr/local/bin/make...not found Checking for program /bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" sh: strings /usr/bin/make Executing: strings /usr/bin/make sh: /lib/ld-linux.so.2 libc.so.6 strcpy mkstemp64 waitpid getloadavg __strtod_internal stdout getlogin readdir64 sigemptyset strerror fdopen memmove getopt_long getenv setlinebuf __rawmemchr __strtol_internal getpid qsort fgets memcpy dup2 feof malloc remove optarg opterr fflush sigaddset abort pipe strrchr __ctype_tolower_loc kill ctime strcat dcgettext chdir optind stdin wait fnmatch ferror strncmp unlink realloc __strdup sscanf sigaction fread __xstat64 gettimeofday localtime memset opendir __assert_fail strcmp getcwd strsignal getpwnam sprintf fclose setlocale stderr vfork __ctype_b_loc fwrite... ... PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) $(AS) $(ASFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) 3.79.1 i686-pc-linux-gnu /bin/sh #;"*?[]&|<>(){}$`^ -c .out .a .ln .o .c .cc .C .cpp .p .f .F .r .y .l .s .S .mod .sym .def .h .info .dvi .tex .texinfo .texi .txinfo .w .ch .web .sh .elc .el Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC} ${SOBJSC})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureBitKeeper from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:23) TESTING: configureBitKeeper from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:23) Find the BitKeeper executable Checking for program /opt/mpich/myrinet/intel/bin/bk...not found Checking for program /opt/gridengine/bin/glinux/bk...not found Checking for program /usr/java/jdk1.5.0/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/globus/bin/bk...not found Checking for program /opt/globus/sbin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /opt/mpich/myrinet/intel/bin/bk...not found Checking for program /opt/gridengine/bin/glinux/bk...not found Checking for program /usr/kerberos/bin/bk...not found Checking for program /usr/java/jdk1.5.0/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /usr/lsf6/etc/bk...not found Checking for program /usr/local/bin/bk...not found Checking for program /bin/bk...not found Checking for program /usr/bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /app1/linux/amber8-2/exe/bk...not found Checking for program /opt/ganglia/bin/bk...not found Checking for program /opt/rocks/bin/bk...not found Checking for program /opt/rocks/sbin/bk...not found Checking for program /app1/linux/bin/bk...not found Checking for program /app1/common/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /app1/linux/amber8-2/exe/bk...not found Checking for program /opt/ganglia/bin/bk...not found Checking for program /opt/rocks/bin/bk...not found Checking for program /opt/rocks/sbin/bk...not found Checking for program /app1/linux/bin/bk...not found Checking for program /app1/common/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /home/enduser/g0306332/bk...not found ================================================================================ TEST configureCVS from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:30) TESTING: configureCVS from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:30) Find the CVS executable Checking for program /opt/mpich/myrinet/intel/bin/cvs...not found Checking for program /opt/gridengine/bin/glinux/cvs...not found Checking for program /usr/java/jdk1.5.0/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/globus/bin/cvs...not found Checking for program /opt/globus/sbin/cvs...not found Checking for program /usr/lsf6/bin/cvs...not found Checking for program /opt/mpich/myrinet/intel/bin/cvs...not found Checking for program /opt/gridengine/bin/glinux/cvs...not found Checking for program /usr/kerberos/bin/cvs...not found Checking for program /usr/java/jdk1.5.0/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /usr/lsf6/bin/cvs...not found Checking for program /usr/lsf6/etc/cvs...not found Checking for program /usr/local/bin/cvs...not found Checking for program /bin/cvs...not found Checking for program /usr/bin/cvs...found Defined make macro "CVS" to "cvs" ================================================================================ TEST configureSubversion from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:35) TESTING: configureSubversion from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:35) Find the Subversion executable Checking for program /opt/mpich/myrinet/intel/bin/svn...not found Checking for program /opt/gridengine/bin/glinux/svn...not found Checking for program /usr/java/jdk1.5.0/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/globus/bin/svn...not found Checking for program /opt/globus/sbin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /opt/mpich/myrinet/intel/bin/svn...not found Checking for program /opt/gridengine/bin/glinux/svn...not found Checking for program /usr/kerberos/bin/svn...not found Checking for program /usr/java/jdk1.5.0/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /usr/lsf6/etc/svn...not found Checking for program /usr/local/bin/svn...not found Checking for program /bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /usr/X11R6/bin/svn...not found Checking for program /app1/linux/amber8-2/exe/svn...not found Checking for program /opt/ganglia/bin/svn...not found Checking for program /opt/rocks/bin/svn...not found Checking for program /opt/rocks/sbin/svn...not found Checking for program /app1/linux/bin/svn...not found Checking for program /app1/common/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /app1/linux/amber8-2/exe/svn...not found Checking for program /opt/ganglia/bin/svn...not found Checking for program /opt/rocks/bin/svn...not found Checking for program /opt/rocks/sbin/svn...not found Checking for program /app1/linux/bin/svn...not found Checking for program /app1/common/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /usr/X11R6/bin/svn...not found Checking for program /home/enduser/g0306332/svn...not found ================================================================================ TEST configureMkdir from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:21) TESTING: configureMkdir from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:21) Make sure we can have mkdir automatically make intermediate directories Checking for program /opt/mpich/myrinet/intel/bin/mkdir...not found Checking for program /opt/gridengine/bin/glinux/mkdir...not found Checking for program /usr/java/jdk1.5.0/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/globus/bin/mkdir...not found Checking for program /opt/globus/sbin/mkdir...not found Checking for program /usr/lsf6/bin/mkdir...not found Checking for program /opt/mpich/myrinet/intel/bin/mkdir...not found Checking for program /opt/gridengine/bin/glinux/mkdir...not found Checking for program /usr/kerberos/bin/mkdir...not found Checking for program /usr/java/jdk1.5.0/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /usr/lsf6/bin/mkdir...not found Checking for program /usr/lsf6/etc/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /bin/mkdir...found sh: /bin/mkdir -p .conftest/tmp Executing: /bin/mkdir -p .conftest/tmp sh: Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configurePrograms from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:43) TESTING: configurePrograms from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:43) Check for the programs needed to build and run PETSc Checking for program /opt/mpich/myrinet/intel/bin/sh...not found Checking for program /opt/gridengine/bin/glinux/sh...not found Checking for program /usr/java/jdk1.5.0/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/globus/bin/sh...not found Checking for program /opt/globus/sbin/sh...not found Checking for program /usr/lsf6/bin/sh...not found Checking for program /opt/mpich/myrinet/intel/bin/sh...not found Checking for program /opt/gridengine/bin/glinux/sh...not found Checking for program /usr/kerberos/bin/sh...not found Checking for program /usr/java/jdk1.5.0/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /usr/lsf6/bin/sh...not found Checking for program /usr/lsf6/etc/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /opt/mpich/myrinet/intel/bin/sed...not found Checking for program /opt/gridengine/bin/glinux/sed...not found Checking for program /usr/java/jdk1.5.0/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/globus/bin/sed...not found Checking for program /opt/globus/sbin/sed...not found Checking for program /usr/lsf6/bin/sed...not found Checking for program /opt/mpich/myrinet/intel/bin/sed...not found Checking for program /opt/gridengine/bin/glinux/sed...not found Checking for program /usr/kerberos/bin/sed...not found Checking for program /usr/java/jdk1.5.0/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /usr/lsf6/bin/sed...not found Checking for program /usr/lsf6/etc/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" Checking for program /opt/mpich/myrinet/intel/bin/mv...not found Checking for program /opt/gridengine/bin/glinux/mv...not found Checking for program /usr/java/jdk1.5.0/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/globus/bin/mv...not found Checking for program /opt/globus/sbin/mv...not found Checking for program /usr/lsf6/bin/mv...not found Checking for program /opt/mpich/myrinet/intel/bin/mv...not found Checking for program /opt/gridengine/bin/glinux/mv...not found Checking for program /usr/kerberos/bin/mv...not found Checking for program /usr/java/jdk1.5.0/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /usr/lsf6/bin/mv...not found Checking for program /usr/lsf6/etc/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /opt/mpich/myrinet/intel/bin/cp...not found Checking for program /opt/gridengine/bin/glinux/cp...not found Checking for program /usr/java/jdk1.5.0/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/globus/bin/cp...not found Checking for program /opt/globus/sbin/cp...not found Checking for program /usr/lsf6/bin/cp...not found Checking for program /opt/mpich/myrinet/intel/bin/cp...not found Checking for program /opt/gridengine/bin/glinux/cp...not found Checking for program /usr/kerberos/bin/cp...not found Checking for program /usr/java/jdk1.5.0/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /usr/lsf6/bin/cp...not found Checking for program /usr/lsf6/etc/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /opt/mpich/myrinet/intel/bin/grep...not found Checking for program /opt/gridengine/bin/glinux/grep...not found Checking for program /usr/java/jdk1.5.0/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/globus/bin/grep...not found Checking for program /opt/globus/sbin/grep...not found Checking for program /usr/lsf6/bin/grep...not found Checking for program /opt/mpich/myrinet/intel/bin/grep...not found Checking for program /opt/gridengine/bin/glinux/grep...not found Checking for program /usr/kerberos/bin/grep...not found Checking for program /usr/java/jdk1.5.0/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /usr/lsf6/bin/grep...not found Checking for program /usr/lsf6/etc/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /opt/mpich/myrinet/intel/bin/rm...not found Checking for program /opt/gridengine/bin/glinux/rm...not found Checking for program /usr/java/jdk1.5.0/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/globus/bin/rm...not found Checking for program /opt/globus/sbin/rm...not found Checking for program /usr/lsf6/bin/rm...not found Checking for program /opt/mpich/myrinet/intel/bin/rm...not found Checking for program /opt/gridengine/bin/glinux/rm...not found Checking for program /usr/kerberos/bin/rm...not found Checking for program /usr/java/jdk1.5.0/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /usr/lsf6/bin/rm...not found Checking for program /usr/lsf6/etc/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /opt/mpich/myrinet/intel/bin/diff...not found Checking for program /opt/gridengine/bin/glinux/diff...not found Checking for program /usr/java/jdk1.5.0/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/globus/bin/diff...not found Checking for program /opt/globus/sbin/diff...not found Checking for program /usr/lsf6/bin/diff...not found Checking for program /opt/mpich/myrinet/intel/bin/diff...not found Checking for program /opt/gridengine/bin/glinux/diff...not found Checking for program /usr/kerberos/bin/diff...not found Checking for program /usr/java/jdk1.5.0/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /usr/lsf6/bin/diff...not found Checking for program /usr/lsf6/etc/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /bin/diff...not found Checking for program /usr/bin/diff...found sh: /usr/bin/diff -w diff1 diff2 Executing: /usr/bin/diff -w diff1 diff2 sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/enduser/g0306332/ps...not found Checking for program /opt/mpich/myrinet/intel/bin/gzip...not found Checking for program /opt/gridengine/bin/glinux/gzip...not found Checking for program /usr/java/jdk1.5.0/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/globus/bin/gzip...not found Checking for program /opt/globus/sbin/gzip...not found Checking for program /usr/lsf6/bin/gzip...not found Checking for program /opt/mpich/myrinet/intel/bin/gzip...not found Checking for program /opt/gridengine/bin/glinux/gzip...not found Checking for program /usr/kerberos/bin/gzip...not found Checking for program /usr/java/jdk1.5.0/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /usr/lsf6/bin/gzip...not found Checking for program /usr/lsf6/etc/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /bin/gzip...found Defined make macro "GZIP" to "/bin/gzip" Defined "HAVE_GZIP" to "1" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:39) TESTING: configureCLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:39) Choose between C and C++ bindings ================================================================================ TEST configureLanguageSupport from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:45) TESTING: configureLanguageSupport from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:45) Check c-support c++-support and other misc tests Allowing C++ name mangling C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureExternC from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:62) TESTING: configureExternC from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:62) Protect C bindings from C++ mangling Defined "USE_EXTERN_CXX" to " " ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:68) TESTING: configureFortranLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:68) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:34) TESTING: configureDirectories from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:34) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 2 #define PETSC_VERSION_MINOR 3 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 8 #define PETSC_VERSION_DATE "September, 1, 2006" #define PETSC_VERSION_PATCH_DATE "Tue Jan 2 14:33:59 PST 2007" #define PETSC_VERSION_HG "ebeddcedcc065e32fc252af32cf1d01ed4fc7a80" Defined make macro "DIR" to "/nas/lsftmp/g0306332/petsc-2.3.2-p8" Defined "DIR" to "/nas/lsftmp/g0306332/petsc-2.3.2-p8" sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.guess Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.guess sh: i686-pc-linux-gnu sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.sub i686-pc-linux-gnu Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.sub i686-pc-linux-gnu sh: i686-pc-linux-gnu ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:112) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:112) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:119) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:119) This is a tarball installation ================================================================================ TEST configureETags from PETSc.utilities.Etags(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise WARNING: ETags files have not been created Checking for program /opt/mpich/myrinet/intel/bin/etags...not found Checking for program /opt/gridengine/bin/glinux/etags...not found Checking for program /usr/java/jdk1.5.0/bin/etags...not found Checking for program /opt/intel/compiler70/ia32/bin/etags...not found Checking for program /opt/intel/compiler70/ia32/bin/etags...not found Checking for program /opt/globus/bin/etags...not found Checking for program /opt/globus/sbin/etags...not found Checking for program /usr/lsf6/bin/etags...not found Checking for program /opt/mpich/myrinet/intel/bin/etags...not found Checking for program /opt/gridengine/bin/glinux/etags...not found Checking for program /usr/kerberos/bin/etags...not found Checking for program /usr/java/jdk1.5.0/bin/etags...not found Checking for program /opt/intel/compiler70/ia32/bin/etags...not found Checking for program /opt/intel/compiler70/ia32/bin/etags...not found Checking for program /usr/lsf6/bin/etags...not found Checking for program /usr/lsf6/etc/etags...not found Checking for program /usr/local/bin/etags...not found Checking for program /bin/etags...not found Checking for program /usr/bin/etags...not found Checking for program /usr/X11R6/bin/etags...not found Checking for program /app1/linux/amber8-2/exe/etags...not found Checking for program /opt/ganglia/bin/etags...not found Checking for program /opt/rocks/bin/etags...not found Checking for program /opt/rocks/sbin/etags...not found Checking for program /app1/linux/bin/etags...not found Checking for program /app1/common/bin/etags...not found Checking for program /usr/lsf6/bin/etags...not found Checking for program /app1/linux/amber8-2/exe/etags...not found Checking for program /opt/ganglia/bin/etags...not found Checking for program /opt/rocks/bin/etags...not found Checking for program /opt/rocks/sbin/etags...not found Checking for program /app1/linux/bin/etags...not found Checking for program /app1/common/bin/etags...not found Checking for program /usr/lsf6/bin/etags...not found Checking for program /usr/X11R6/bin/etags...not found Checking for program /home/enduser/g0306332/etags...not found Checking for program /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/win32fe/etags...not found The etags command is not in your path, cannot build etags files ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST checkVendor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:208) TESTING: checkVendor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:208) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:218) TESTING: checkInitialFlags from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:218) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized executableFlags to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:326) TESTING: checkCCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:326) Locate a functional C compiler Checking for program /opt/mpich/myrinet/intel/bin/gcc...not found Checking for program /opt/gridengine/bin/glinux/gcc...not found Checking for program /usr/java/jdk1.5.0/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/globus/bin/gcc...not found Checking for program /opt/globus/sbin/gcc...not found Checking for program /usr/lsf6/bin/gcc...not found Checking for program /opt/mpich/myrinet/intel/bin/gcc...not found Checking for program /opt/gridengine/bin/glinux/gcc...not found Checking for program /usr/kerberos/bin/gcc...not found Checking for program /usr/java/jdk1.5.0/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /usr/lsf6/bin/gcc...not found Checking for program /usr/lsf6/etc/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CC" to "gcc" Pushing language C sh: gcc -c -o conftest.o conftest.c Executing: gcc -c -o conftest.o conftest.c sh: sh: gcc -c -o conftest.o conftest.c Executing: gcc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: gcc -o conftest conftest.o Executing: gcc -o conftest conftest.o sh: sh: gcc -c -o conftest.o conftest.c Executing: gcc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: gcc -o conftest conftest.o Executing: gcc -o conftest conftest.o sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:375) TESTING: checkCPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:375) Locate a functional C preprocessor Checking for program /opt/mpich/myrinet/intel/bin/gcc...not found Checking for program /opt/gridengine/bin/glinux/gcc...not found Checking for program /usr/java/jdk1.5.0/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/globus/bin/gcc...not found Checking for program /opt/globus/sbin/gcc...not found Checking for program /usr/lsf6/bin/gcc...not found Checking for program /opt/mpich/myrinet/intel/bin/gcc...not found Checking for program /opt/gridengine/bin/glinux/gcc...not found Checking for program /usr/kerberos/bin/gcc...not found Checking for program /usr/java/jdk1.5.0/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /opt/intel/compiler70/ia32/bin/gcc...not found Checking for program /usr/lsf6/bin/gcc...not found Checking for program /usr/lsf6/etc/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CPP" to "gcc -E" Pushing language C sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 # 25 "/usr/include/stdlib.h" 3 # 1 "/usr/include/features.h" 1 3 # 295 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 296 "/usr/include/features.h" 2 3 # 318 "/usr/include/features.h" 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 26 "/usr/include/stdlib.h" 2 3 # 1 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/include/stddef.h" 1 3 # 213 "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/inclu... ... mblen (__const char *__s, size_t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; # 916 "/usr/include/stdlib.h" 3 extern int getloadavg (double __loadavg[], int __nelem) ; # 4 "conftest.c" 2 Popping language C ================================================================================ TEST checkCxxCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:478) TESTING: checkCxxCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:478) Locate a functional Cxx compiler Failure to find language module: No module named Cxx Failure to find language module: No module named Cxx ********************************************************************************* UNABLE to FIND MODULE for config/configure.py --------------------------------------------------------------------------------------- No module named Cxx ********************************************************************************* File "./config/configure.py", line 175, in petsc_configure framework.configure(out = sys.stdout) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/framework.py", line 876, in configure child.configure() File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py", line 1183, in configure self.executeTest(self.checkCxxCompiler) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/base.py", line 93, in executeTest return apply(test, args,kargs) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py", line 487, in checkCxxCompiler self.framework.getCompilerObject('Cxx').sourceExtension = ext File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/script.py", line 402, in getCompilerObject self.compilerObject[language] = self.getLanguageModule(language).Compiler(self.argDB) File "/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/script.py", line 378, in getLanguageModule module = __import__(moduleName) ================================================================================= ================================================================================= Previous configure logs below ================================================================================= Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.guess Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.guess sh: i686-pc-linux-gnu sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.sub i686-pc-linux-gnu Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/config.sub i686-pc-linux-gnu sh: i686-pc-linux-gnu ================================================================================ ================================================================================ Starting Configure Run at Tue Jan 30 11:57:50 2007 Configure Options: --with-cc=/scratch/g0306332/intel/cc/bin/icc --with-fc=/lsftmp/g0306332/inter/fc/bin/ifort --with-blas-lapack-dir=/lsftmp/g0306332/inter/mkl/lib/32 --with-mpi=0 --with-x=0 --with-shared --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions Working directory: /nas/lsftmp/g0306332/petsc-2.3.2-p8 Python version: 2.2.3 (#1, Sep 30 2004, 22:31:19) [GCC 3.2.3 20030502 (Red Hat Linux 3.2.3-42)] ================================================================================ Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/framework.py:807) TESTING: configureExternalPackagesDir from config.framework(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/framework.py:807) ================================================================================ TEST configureLibrary from PETSc.packages.PVODE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.PVODE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/PVODE.py:10) Find a PVODE installation and check if it can work with PETSc ================================================================================ TEST configureLibrary from PETSc.packages.NetCDF(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/NetCDF.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/NetCDF.py:10) Find a NetCDF installation and check if it can work with PETSc ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /opt/mpich/myrinet/intel/bin/gdb...not found Checking for program /opt/gridengine/bin/glinux/gdb...not found Checking for program /usr/java/jdk1.5.0/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/globus/bin/gdb...not found Checking for program /opt/globus/sbin/gdb...not found Checking for program /usr/lsf6/bin/gdb...not found Checking for program /opt/mpich/myrinet/intel/bin/gdb...not found Checking for program /opt/gridengine/bin/glinux/gdb...not found Checking for program /usr/kerberos/bin/gdb...not found Checking for program /usr/java/jdk1.5.0/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /opt/intel/compiler70/ia32/bin/gdb...not found Checking for program /usr/lsf6/bin/gdb...not found Checking for program /usr/lsf6/etc/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /opt/mpich/myrinet/intel/bin/dbx...not found Checking for program /opt/gridengine/bin/glinux/dbx...not found Checking for program /usr/java/jdk1.5.0/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/globus/bin/dbx...not found Checking for program /opt/globus/sbin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /opt/mpich/myrinet/intel/bin/dbx...not found Checking for program /opt/gridengine/bin/glinux/dbx...not found Checking for program /usr/kerberos/bin/dbx...not found Checking for program /usr/java/jdk1.5.0/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /opt/intel/compiler70/ia32/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /usr/lsf6/etc/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /app1/linux/amber8-2/exe/dbx...not found Checking for program /opt/ganglia/bin/dbx...not found Checking for program /opt/rocks/bin/dbx...not found Checking for program /opt/rocks/sbin/dbx...not found Checking for program /app1/linux/bin/dbx...not found Checking for program /app1/common/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /app1/linux/amber8-2/exe/dbx...not found Checking for program /opt/ganglia/bin/dbx...not found Checking for program /opt/rocks/bin/dbx...not found Checking for program /opt/rocks/sbin/dbx...not found Checking for program /app1/linux/bin/dbx...not found Checking for program /app1/common/bin/dbx...not found Checking for program /usr/lsf6/bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /home/enduser/g0306332/dbx...not found Checking for program /opt/mpich/myrinet/intel/bin/xdb...not found Checking for program /opt/gridengine/bin/glinux/xdb...not found Checking for program /usr/java/jdk1.5.0/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/globus/bin/xdb...not found Checking for program /opt/globus/sbin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /opt/mpich/myrinet/intel/bin/xdb...not found Checking for program /opt/gridengine/bin/glinux/xdb...not found Checking for program /usr/kerberos/bin/xdb...not found Checking for program /usr/java/jdk1.5.0/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /opt/intel/compiler70/ia32/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /usr/lsf6/etc/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /app1/linux/amber8-2/exe/xdb...not found Checking for program /opt/ganglia/bin/xdb...not found Checking for program /opt/rocks/bin/xdb...not found Checking for program /opt/rocks/sbin/xdb...not found Checking for program /app1/linux/bin/xdb...not found Checking for program /app1/common/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /app1/linux/amber8-2/exe/xdb...not found Checking for program /opt/ganglia/bin/xdb...not found Checking for program /opt/rocks/bin/xdb...not found Checking for program /opt/rocks/sbin/xdb...not found Checking for program /app1/linux/bin/xdb...not found Checking for program /app1/common/bin/xdb...not found Checking for program /usr/lsf6/bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /home/enduser/g0306332/xdb...not found ================================================================================ TEST configureMake from PETSc.utilities.Make(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Make.py:21) TESTING: configureMake from PETSc.utilities.Make(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Make.py:21) Check various things about make Checking for program /opt/mpich/myrinet/intel/bin/make...not found Checking for program /opt/gridengine/bin/glinux/make...not found Checking for program /usr/java/jdk1.5.0/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/globus/bin/make...not found Checking for program /opt/globus/sbin/make...not found Checking for program /usr/lsf6/bin/make...not found Checking for program /opt/mpich/myrinet/intel/bin/make...not found Checking for program /opt/gridengine/bin/glinux/make...not found Checking for program /usr/kerberos/bin/make...not found Checking for program /usr/java/jdk1.5.0/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /opt/intel/compiler70/ia32/bin/make...not found Checking for program /usr/lsf6/bin/make...not found Checking for program /usr/lsf6/etc/make...not found Checking for program /usr/local/bin/make...not found Checking for program /bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" sh: strings /usr/bin/make Executing: strings /usr/bin/make sh: /lib/ld-linux.so.2 libc.so.6 strcpy mkstemp64 waitpid getloadavg __strtod_internal stdout getlogin readdir64 sigemptyset strerror fdopen memmove getopt_long getenv setlinebuf __rawmemchr __strtol_internal getpid qsort fgets memcpy dup2 feof malloc remove optarg opterr fflush sigaddset abort pipe strrchr __ctype_tolower_loc kill ctime strcat dcgettext chdir optind stdin wait fnmatch ferror strncmp unlink realloc __strdup sscanf sigaction fread __xstat64 gettimeofday localtime memset opendir __assert_fail strcmp getcwd strsignal getpwnam sprintf fclose setlocale stderr vfork __ctype_b_loc fwrite... ... PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) $(AS) $(ASFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) 3.79.1 i686-pc-linux-gnu /bin/sh #;"*?[]&|<>(){}$`^ -c .out .a .ln .o .c .cc .C .cpp .p .f .F .r .y .l .s .S .mod .sym .def .h .info .dvi .tex .texinfo .texi .txinfo .w .ch .web .sh .elc .el Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC} ${SOBJSC})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureBitKeeper from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:23) TESTING: configureBitKeeper from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:23) Find the BitKeeper executable Checking for program /opt/mpich/myrinet/intel/bin/bk...not found Checking for program /opt/gridengine/bin/glinux/bk...not found Checking for program /usr/java/jdk1.5.0/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/globus/bin/bk...not found Checking for program /opt/globus/sbin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /opt/mpich/myrinet/intel/bin/bk...not found Checking for program /opt/gridengine/bin/glinux/bk...not found Checking for program /usr/kerberos/bin/bk...not found Checking for program /usr/java/jdk1.5.0/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /opt/intel/compiler70/ia32/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /usr/lsf6/etc/bk...not found Checking for program /usr/local/bin/bk...not found Checking for program /bin/bk...not found Checking for program /usr/bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /app1/linux/amber8-2/exe/bk...not found Checking for program /opt/ganglia/bin/bk...not found Checking for program /opt/rocks/bin/bk...not found Checking for program /opt/rocks/sbin/bk...not found Checking for program /app1/linux/bin/bk...not found Checking for program /app1/common/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /app1/linux/amber8-2/exe/bk...not found Checking for program /opt/ganglia/bin/bk...not found Checking for program /opt/rocks/bin/bk...not found Checking for program /opt/rocks/sbin/bk...not found Checking for program /app1/linux/bin/bk...not found Checking for program /app1/common/bin/bk...not found Checking for program /usr/lsf6/bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /home/enduser/g0306332/bk...not found ================================================================================ TEST configureCVS from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:30) TESTING: configureCVS from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:30) Find the CVS executable Checking for program /opt/mpich/myrinet/intel/bin/cvs...not found Checking for program /opt/gridengine/bin/glinux/cvs...not found Checking for program /usr/java/jdk1.5.0/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/globus/bin/cvs...not found Checking for program /opt/globus/sbin/cvs...not found Checking for program /usr/lsf6/bin/cvs...not found Checking for program /opt/mpich/myrinet/intel/bin/cvs...not found Checking for program /opt/gridengine/bin/glinux/cvs...not found Checking for program /usr/kerberos/bin/cvs...not found Checking for program /usr/java/jdk1.5.0/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /opt/intel/compiler70/ia32/bin/cvs...not found Checking for program /usr/lsf6/bin/cvs...not found Checking for program /usr/lsf6/etc/cvs...not found Checking for program /usr/local/bin/cvs...not found Checking for program /bin/cvs...not found Checking for program /usr/bin/cvs...found Defined make macro "CVS" to "cvs" ================================================================================ TEST configureSubversion from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:35) TESTING: configureSubversion from config.sourceControl(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/sourceControl.py:35) Find the Subversion executable Checking for program /opt/mpich/myrinet/intel/bin/svn...not found Checking for program /opt/gridengine/bin/glinux/svn...not found Checking for program /usr/java/jdk1.5.0/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/globus/bin/svn...not found Checking for program /opt/globus/sbin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /opt/mpich/myrinet/intel/bin/svn...not found Checking for program /opt/gridengine/bin/glinux/svn...not found Checking for program /usr/kerberos/bin/svn...not found Checking for program /usr/java/jdk1.5.0/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /opt/intel/compiler70/ia32/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /usr/lsf6/etc/svn...not found Checking for program /usr/local/bin/svn...not found Checking for program /bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /usr/X11R6/bin/svn...not found Checking for program /app1/linux/amber8-2/exe/svn...not found Checking for program /opt/ganglia/bin/svn...not found Checking for program /opt/rocks/bin/svn...not found Checking for program /opt/rocks/sbin/svn...not found Checking for program /app1/linux/bin/svn...not found Checking for program /app1/common/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /app1/linux/amber8-2/exe/svn...not found Checking for program /opt/ganglia/bin/svn...not found Checking for program /opt/rocks/bin/svn...not found Checking for program /opt/rocks/sbin/svn...not found Checking for program /app1/linux/bin/svn...not found Checking for program /app1/common/bin/svn...not found Checking for program /usr/lsf6/bin/svn...not found Checking for program /usr/X11R6/bin/svn...not found Checking for program /home/enduser/g0306332/svn...not found ================================================================================ TEST configureMkdir from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:21) TESTING: configureMkdir from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:21) Make sure we can have mkdir automatically make intermediate directories Checking for program /opt/mpich/myrinet/intel/bin/mkdir...not found Checking for program /opt/gridengine/bin/glinux/mkdir...not found Checking for program /usr/java/jdk1.5.0/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/globus/bin/mkdir...not found Checking for program /opt/globus/sbin/mkdir...not found Checking for program /usr/lsf6/bin/mkdir...not found Checking for program /opt/mpich/myrinet/intel/bin/mkdir...not found Checking for program /opt/gridengine/bin/glinux/mkdir...not found Checking for program /usr/kerberos/bin/mkdir...not found Checking for program /usr/java/jdk1.5.0/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /opt/intel/compiler70/ia32/bin/mkdir...not found Checking for program /usr/lsf6/bin/mkdir...not found Checking for program /usr/lsf6/etc/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /bin/mkdir...found sh: /bin/mkdir -p .conftest/tmp Executing: /bin/mkdir -p .conftest/tmp sh: Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configurePrograms from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:43) TESTING: configurePrograms from config.programs(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/programs.py:43) Check for the programs needed to build and run PETSc Checking for program /opt/mpich/myrinet/intel/bin/sh...not found Checking for program /opt/gridengine/bin/glinux/sh...not found Checking for program /usr/java/jdk1.5.0/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/globus/bin/sh...not found Checking for program /opt/globus/sbin/sh...not found Checking for program /usr/lsf6/bin/sh...not found Checking for program /opt/mpich/myrinet/intel/bin/sh...not found Checking for program /opt/gridengine/bin/glinux/sh...not found Checking for program /usr/kerberos/bin/sh...not found Checking for program /usr/java/jdk1.5.0/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /opt/intel/compiler70/ia32/bin/sh...not found Checking for program /usr/lsf6/bin/sh...not found Checking for program /usr/lsf6/etc/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /opt/mpich/myrinet/intel/bin/sed...not found Checking for program /opt/gridengine/bin/glinux/sed...not found Checking for program /usr/java/jdk1.5.0/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/globus/bin/sed...not found Checking for program /opt/globus/sbin/sed...not found Checking for program /usr/lsf6/bin/sed...not found Checking for program /opt/mpich/myrinet/intel/bin/sed...not found Checking for program /opt/gridengine/bin/glinux/sed...not found Checking for program /usr/kerberos/bin/sed...not found Checking for program /usr/java/jdk1.5.0/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /opt/intel/compiler70/ia32/bin/sed...not found Checking for program /usr/lsf6/bin/sed...not found Checking for program /usr/lsf6/etc/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" Checking for program /opt/mpich/myrinet/intel/bin/mv...not found Checking for program /opt/gridengine/bin/glinux/mv...not found Checking for program /usr/java/jdk1.5.0/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/globus/bin/mv...not found Checking for program /opt/globus/sbin/mv...not found Checking for program /usr/lsf6/bin/mv...not found Checking for program /opt/mpich/myrinet/intel/bin/mv...not found Checking for program /opt/gridengine/bin/glinux/mv...not found Checking for program /usr/kerberos/bin/mv...not found Checking for program /usr/java/jdk1.5.0/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /opt/intel/compiler70/ia32/bin/mv...not found Checking for program /usr/lsf6/bin/mv...not found Checking for program /usr/lsf6/etc/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /opt/mpich/myrinet/intel/bin/cp...not found Checking for program /opt/gridengine/bin/glinux/cp...not found Checking for program /usr/java/jdk1.5.0/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/globus/bin/cp...not found Checking for program /opt/globus/sbin/cp...not found Checking for program /usr/lsf6/bin/cp...not found Checking for program /opt/mpich/myrinet/intel/bin/cp...not found Checking for program /opt/gridengine/bin/glinux/cp...not found Checking for program /usr/kerberos/bin/cp...not found Checking for program /usr/java/jdk1.5.0/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /opt/intel/compiler70/ia32/bin/cp...not found Checking for program /usr/lsf6/bin/cp...not found Checking for program /usr/lsf6/etc/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /opt/mpich/myrinet/intel/bin/grep...not found Checking for program /opt/gridengine/bin/glinux/grep...not found Checking for program /usr/java/jdk1.5.0/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/globus/bin/grep...not found Checking for program /opt/globus/sbin/grep...not found Checking for program /usr/lsf6/bin/grep...not found Checking for program /opt/mpich/myrinet/intel/bin/grep...not found Checking for program /opt/gridengine/bin/glinux/grep...not found Checking for program /usr/kerberos/bin/grep...not found Checking for program /usr/java/jdk1.5.0/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /opt/intel/compiler70/ia32/bin/grep...not found Checking for program /usr/lsf6/bin/grep...not found Checking for program /usr/lsf6/etc/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /opt/mpich/myrinet/intel/bin/rm...not found Checking for program /opt/gridengine/bin/glinux/rm...not found Checking for program /usr/java/jdk1.5.0/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/globus/bin/rm...not found Checking for program /opt/globus/sbin/rm...not found Checking for program /usr/lsf6/bin/rm...not found Checking for program /opt/mpich/myrinet/intel/bin/rm...not found Checking for program /opt/gridengine/bin/glinux/rm...not found Checking for program /usr/kerberos/bin/rm...not found Checking for program /usr/java/jdk1.5.0/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /opt/intel/compiler70/ia32/bin/rm...not found Checking for program /usr/lsf6/bin/rm...not found Checking for program /usr/lsf6/etc/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /opt/mpich/myrinet/intel/bin/diff...not found Checking for program /opt/gridengine/bin/glinux/diff...not found Checking for program /usr/java/jdk1.5.0/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/globus/bin/diff...not found Checking for program /opt/globus/sbin/diff...not found Checking for program /usr/lsf6/bin/diff...not found Checking for program /opt/mpich/myrinet/intel/bin/diff...not found Checking for program /opt/gridengine/bin/glinux/diff...not found Checking for program /usr/kerberos/bin/diff...not found Checking for program /usr/java/jdk1.5.0/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /opt/intel/compiler70/ia32/bin/diff...not found Checking for program /usr/lsf6/bin/diff...not found Checking for program /usr/lsf6/etc/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /bin/diff...not found Checking for program /usr/bin/diff...found sh: /usr/bin/diff -w diff1 diff2 Executing: /usr/bin/diff -w diff1 diff2 sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/enduser/g0306332/ps...not found Checking for program /opt/mpich/myrinet/intel/bin/gzip...not found Checking for program /opt/gridengine/bin/glinux/gzip...not found Checking for program /usr/java/jdk1.5.0/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/globus/bin/gzip...not found Checking for program /opt/globus/sbin/gzip...not found Checking for program /usr/lsf6/bin/gzip...not found Checking for program /opt/mpich/myrinet/intel/bin/gzip...not found Checking for program /opt/gridengine/bin/glinux/gzip...not found Checking for program /usr/kerberos/bin/gzip...not found Checking for program /usr/java/jdk1.5.0/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /opt/intel/compiler70/ia32/bin/gzip...not found Checking for program /usr/lsf6/bin/gzip...not found Checking for program /usr/lsf6/etc/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /bin/gzip...found Defined make macro "GZIP" to "/bin/gzip" Defined "HAVE_GZIP" to "1" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:39) TESTING: configureCLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:39) Choose between C and C++ bindings ================================================================================ TEST configureLanguageSupport from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:45) TESTING: configureLanguageSupport from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:45) Check c-support c++-support and other misc tests Turning off C++ support Allowing C++ name mangling C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureExternC from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:62) TESTING: configureExternC from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:62) Protect C bindings from C++ mangling Defined "USE_EXTERN_CXX" to " " ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:68) TESTING: configureFortranLanguage from PETSc.utilities.languages(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/languages.py:68) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:34) TESTING: configureDirectories from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:34) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 2 #define PETSC_VERSION_MINOR 3 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 8 #define PETSC_VERSION_DATE "September, 1, 2006" #define PETSC_VERSION_PATCH_DATE "Tue Jan 2 14:33:59 PST 2007" #define PETSC_VERSION_HG "ebeddcedcc065e32fc252af32cf1d01ed4fc7a80" Defined make macro "DIR" to "/nas/lsftmp/g0306332/petsc-2.3.2-p8" Defined "DIR" to "/nas/lsftmp/g0306332/petsc-2.3.2-p8" sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.guess Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.guess sh: i686-pc-linux-gnu sh: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.sub i686-pc-linux-gnu Executing: /bin/sh /nas/lsftmp/g0306332/petsc-2.3.2-p8/bin/config/config.sub i686-pc-linux-gnu sh: i686-pc-linux-gnu ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:112) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:112) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:119) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/petscdir.py:119) This is a tarball installation ================================================================================ TEST configureETags from PETSc.utilities.Etags(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST checkVendor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:208) TESTING: checkVendor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:208) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:218) TESTING: checkInitialFlags from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:218) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized executableFlags to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:326) TESTING: checkCCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:326) Locate a functional C compiler Checking for program /scratch/g0306332/intel/cc/bin/icc...found Defined make macro "CC" to "/scratch/g0306332/intel/cc/bin/icc" Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest conftest.o Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest conftest.o sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest conftest.o Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest conftest.o sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:375) TESTING: checkCPreprocessor from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:375) Locate a functional C preprocessor Checking for program /scratch/g0306332/intel/cc/bin/icc...found Defined make macro "CPP" to "/scratch/g0306332/intel/cc/bin/icc -E" Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/... ... s, size_t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; # 870 "/usr/include/stdlib.h" 3 # 901 "/usr/include/stdlib.h" 3 # 911 "/usr/include/stdlib.h" 3 extern int getloadavg (double __loadavg[], int __nelem) ; # 4 "conftest.c" 2 Popping language C ================================================================================ TEST checkCxxCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:478) TESTING: checkCxxCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:478) Locate a functional Cxx compiler ================================================================================ TEST checkFortranCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:638) TESTING: checkFortranCompiler from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:638) Locate a functional Fortran compiler Checking for program /lsftmp/g0306332/inter/fc/bin/ifort...found Defined make macro "FC" to "/lsftmp/g0306332/inter/fc/bin/ifort" Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F sh: sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest conftest.o Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest conftest.o sh: sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest conftest.o Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest conftest.o sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:673) TESTING: checkFortranComments from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:673) Make sure fortran comment "!" works Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F sh: Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkBrokenMpif90 from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:682) TESTING: checkBrokenMpif90 from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:682) mpif90 from mpich1 and older c-preprocessor combinations misbehave Pushing language FC Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:722) TESTING: checkPIC from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:722) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Trying C compiler flag -PIC sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -PIC conftest.o Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -PIC conftest.o sh: Possible ERROR while running linker: icc: Command line warning: ignoring option '-P'; no argument required output: error message = {icc: Command line warning: ignoring option '-P'; no argument required } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -PIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting C linker flag -PIC due to icc: Command line warning: ignoring option '-P'; no argument required Rejected C compiler flag -PIC because linker cannot handle it Trying C compiler flag -fPIC sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC conftest.o Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC conftest.o sh: Valid C linker flag -fPIC Adding C compiler flag -fPIC sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c sh: Added C compiler flag -fPIC Popping language C Pushing language FC Trying FC compiler flag -PIC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -PIC conftest.o Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -PIC conftest.o sh: Possible ERROR while running linker: ifort: Command line warning: ignoring option '-P'; no argument required output: error message = {ifort: Command line warning: ignoring option '-P'; no argument required } Pushing language C Popping language C in /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -PIC conftest.o Source: program main end Rejecting FC linker flag -PIC due to ifort: Command line warning: ignoring option '-P'; no argument required Rejected FC compiler flag -PIC because linker cannot handle it Trying FC compiler flag -fPIC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC conftest.o Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC conftest.o sh: Valid FC linker flag -fPIC Adding FC compiler flag -fPIC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC conftest.F sh: Added FC compiler flag -fPIC Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:762) TESTING: checkLargeFileIO from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:762) ================================================================================ TEST checkArchiver from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:852) TESTING: checkArchiver from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:852) Check that the archiver exists and can make a library usable by the compiler Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c sh: Checking for program /opt/mpich/myrinet/intel/bin/ar...not found Checking for program /opt/gridengine/bin/glinux/ar...not found Checking for program /usr/java/jdk1.5.0/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/globus/bin/ar...not found Checking for program /opt/globus/sbin/ar...not found Checking for program /usr/lsf6/bin/ar...not found Checking for program /opt/mpich/myrinet/intel/bin/ar...not found Checking for program /opt/gridengine/bin/glinux/ar...not found Checking for program /usr/kerberos/bin/ar...not found Checking for program /usr/java/jdk1.5.0/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /usr/lsf6/bin/ar...not found Checking for program /usr/lsf6/etc/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /opt/mpich/myrinet/intel/bin/ranlib...not found Checking for program /opt/gridengine/bin/glinux/ranlib...not found Checking for program /usr/java/jdk1.5.0/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/globus/bin/ranlib...not found Checking for program /opt/globus/sbin/ranlib...not found Checking for program /usr/lsf6/bin/ranlib...not found Checking for program /opt/mpich/myrinet/intel/bin/ranlib...not found Checking for program /opt/gridengine/bin/glinux/ranlib...not found Checking for program /usr/kerberos/bin/ranlib...not found Checking for program /usr/java/jdk1.5.0/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /usr/lsf6/bin/ranlib...not found Checking for program /usr/lsf6/etc/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib -c libconf1.a Executing: /usr/bin/ranlib -c libconf1.a sh: Possible ERROR while running ranlib: ret = 2304 error message = {/usr/bin/ranlib: -c: No such file or directory } Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c sh: Checking for program /opt/mpich/myrinet/intel/bin/ar...not found Checking for program /opt/gridengine/bin/glinux/ar...not found Checking for program /usr/java/jdk1.5.0/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/globus/bin/ar...not found Checking for program /opt/globus/sbin/ar...not found Checking for program /usr/lsf6/bin/ar...not found Checking for program /opt/mpich/myrinet/intel/bin/ar...not found Checking for program /opt/gridengine/bin/glinux/ar...not found Checking for program /usr/kerberos/bin/ar...not found Checking for program /usr/java/jdk1.5.0/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /opt/intel/compiler70/ia32/bin/ar...not found Checking for program /usr/lsf6/bin/ar...not found Checking for program /usr/lsf6/etc/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /opt/mpich/myrinet/intel/bin/ranlib...not found Checking for program /opt/gridengine/bin/glinux/ranlib...not found Checking for program /usr/java/jdk1.5.0/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/globus/bin/ranlib...not found Checking for program /opt/globus/sbin/ranlib...not found Checking for program /usr/lsf6/bin/ranlib...not found Checking for program /opt/mpich/myrinet/intel/bin/ranlib...not found Checking for program /opt/gridengine/bin/glinux/ranlib...not found Checking for program /usr/kerberos/bin/ranlib...not found Checking for program /usr/java/jdk1.5.0/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /opt/intel/compiler70/ia32/bin/ranlib...not found Checking for program /usr/lsf6/bin/ranlib...not found Checking for program /usr/lsf6/etc/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib libconf1.a Executing: /usr/bin/ranlib libconf1.a sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC conftest.o -L. -lconf1 Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC conftest.o -L. -lconf1 sh: Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:955) TESTING: checkSharedLinker from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:955) Check that the linker can produce shared libraries Checking shared linker /scratch/g0306332/intel/cc/bin/icc using flags ['-shared'] Checking for program /scratch/g0306332/intel/cc/bin/icc...found Defined make macro "LD_SHARED" to "/scratch/g0306332/intel/cc/bin/icc" sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -shared -fPIC conftest.o Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -shared -fPIC conftest.o sh: Valid C linker flag -shared sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o libconftest.so -shared -fPIC conftest.o Executing: /scratch/g0306332/intel/cc/bin/icc -o libconftest.so -shared -fPIC conftest.o sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC conftest.o -L. -lconftest Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC conftest.o -L. -lconftest sh: Using shared linker /scratch/g0306332/intel/cc/bin/icc with flags ['-shared'] and library extension so sh: uname -s Executing: uname -s sh: Linux ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1026) TESTING: checkSharedLinkerPaths from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1026) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -flags Executing: /scratch/g0306332/intel/cc/bin/icc -flags sh: Trying C linker flag -Wl,-rpath, sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 -fPIC conftest.o Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 -fPIC conftest.o sh: Valid C linker flag -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 Popping language C Pushing language FC sh: /scratch/g0306332/intel/cc/bin/icc -flags Executing: /scratch/g0306332/intel/cc/bin/icc -flags sh: Trying FC linker flag -Wl,-rpath, sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 -fPIC conftest.o Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 -fPIC conftest.o sh: Valid FC linker flag -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8 Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1056) TESTING: checkLibC from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1056) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o libconftest.so -shared -fPIC conftest.o Executing: /scratch/g0306332/intel/cc/bin/icc -o libconftest.so -shared -fPIC conftest.o sh: Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1100) TESTING: checkDynamicLinker from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1100) Check that the linker can produce dynamic libraries Checking for header: dlfcn.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/inc... ... n.h" 2 3 # 1 "/scratch/g0306332/intel/cc/include/stddef.h" 1 3 typedef int ptrdiff_t; typedef unsigned size_t; typedef long int wchar_t; # 26 "/usr/include/dlfcn.h" 2 3 # 1 "/usr/include/bits/dlfcn.h" 1 3 # 29 "/usr/include/dlfcn.h" 2 3 # 43 "/usr/include/dlfcn.h" 3 extern void *dlopen (__const char *__file, int __mode) ; extern int dlclose (void *__handle) ; extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) ; # 67 "/usr/include/dlfcn.h" 3 extern char *dlerror (void) ; # 155 "/usr/include/dlfcn.h" 3 # 4 "conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for functions ['dlopen', 'dlsym', 'dlclose'] in library ['dl'] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC conftest.o -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC conftest.o -ldl sh: Popping language C Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC conftest.o -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC conftest.o -ldl sh: Popping language C Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC conftest.o -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC conftest.o -ldl sh: Popping language C Adding ['dl'] to LIBS sh: uname -s Executing: uname -s sh: Linux Checking dynamic linker /scratch/g0306332/intel/cc/bin/icc using flags ['-shared'] Checking for program /scratch/g0306332/intel/cc/bin/icc...found Defined make macro "DYNAMICLINKER" to "/scratch/g0306332/intel/cc/bin/icc" sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -shared -fPIC conftest.o -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -shared -fPIC conftest.o -ldl sh: Valid C linker flag -shared sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o libconftest.so -shared -fPIC conftest.o -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o libconftest.so -shared -fPIC conftest.o -ldl sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC conftest.o -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC conftest.o -ldl sh: Using dynamic linker /scratch/g0306332/intel/cc/bin/icc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1146) TESTING: output from config.setCompilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/setCompilers.py:1146) Output module data as defines and substitutions Substituting "CC" with "/scratch/g0306332/intel/cc/bin/icc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/scratch/g0306332/intel/cc/bin/icc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "" Substituting "FC" with "/lsftmp/g0306332/inter/fc/bin/ifort" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilerFlags.py:66) TESTING: configureCompilerFlags from config.compilerFlags(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilerFlags.py:66) Get the default compiler flags Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc --version Executing: /scratch/g0306332/intel/cc/bin/icc --version sh: icc (ICC) 9.1 20060706 Copyright (C) 1985-2006 Intel Corporation. All rights reserved. getCompilerVersion: /scratch/g0306332/intel/cc/bin/icc icc (ICC) 9.1 20060706 sh: /scratch/g0306332/intel/cc/bin/icc --help Executing: /scratch/g0306332/intel/cc/bin/icc --help sh: Intel(R) C Compiler Help ======================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 optimize for maximum speed, but disable some optimizations... ... efault on systems running a gcc version lower than 3.2) -u pretend the is undefined -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor Copyright (C) 1985-2006, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. sh: /scratch/g0306332/intel/cc/bin/icc --help Executing: /scratch/g0306332/intel/cc/bin/icc --help sh: Intel(R) C Compiler Help ======================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 optimize for maximum speed, but disable some optimizations... ... efault on systems running a gcc version lower than 3.2) -u pretend the is undefined -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor Copyright (C) 1985-2006, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. Trying C compiler flag -wd1572 sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 conftest.c sh: Added C compiler flag -wd1572 sh: /scratch/g0306332/intel/cc/bin/icc --help Executing: /scratch/g0306332/intel/cc/bin/icc --help sh: Intel(R) C Compiler Help ======================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 optimize for maximum speed, but disable some optimizations... ... efault on systems running a gcc version lower than 3.2) -u pretend the is undefined -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor Copyright (C) 1985-2006, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. sh: /scratch/g0306332/intel/cc/bin/icc --help Executing: /scratch/g0306332/intel/cc/bin/icc --help sh: Intel(R) C Compiler Help ======================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 optimize for maximum speed, but disable some optimizations... ... efault on systems running a gcc version lower than 3.2) -u pretend the is undefined -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor Copyright (C) 1985-2006, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. Trying C compiler flag -g sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Added C compiler flag -g Popping language C Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort --version Executing: /lsftmp/g0306332/inter/fc/bin/ifort --version sh: ifort (IFORT) 9.1 20061103 Copyright (C) 1985-2006 Intel Corporation. All rights reserved. getCompilerVersion: /lsftmp/g0306332/inter/fc/bin/ifort ifort (IFORT) 9.1 20061103 sh: /lsftmp/g0306332/inter/fc/bin/ifort --help Executing: /lsftmp/g0306332/inter/fc/bin/ifort --help sh: Intel(R) Fortran Compiler Help ============================== usage: ifort [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .F .FOR .F90 .i .i90), assembly (.s .S), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the ifort.cfg file. Compiler Option List -------------------- Performance ----------- -O1 optimize for maximum speed, but disable some o... ... than 3.2) -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor -[no]threads specify whether or not multi-threaded libraries should be linked against Copyright (C) 1985-2006, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. sh: /lsftmp/g0306332/inter/fc/bin/ifort --help Executing: /lsftmp/g0306332/inter/fc/bin/ifort --help sh: Intel(R) Fortran Compiler Help ============================== usage: ifort [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .F .FOR .F90 .i .i90), assembly (.s .S), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the ifort.cfg file. Compiler Option List -------------------- Performance ----------- -O1 optimize for maximum speed, but disable some o... ... than 3.2) -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor -[no]threads specify whether or not multi-threaded libraries should be linked against Copyright (C) 1985-2006, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. sh: /lsftmp/g0306332/inter/fc/bin/ifort --help Executing: /lsftmp/g0306332/inter/fc/bin/ifort --help sh: Intel(R) Fortran Compiler Help ============================== usage: ifort [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .F .FOR .F90 .i .i90), assembly (.s .S), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the ifort.cfg file. Compiler Option List -------------------- Performance ----------- -O1 optimize for maximum speed, but disable some o... ... than 3.2) -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor -[no]threads specify whether or not multi-threaded libraries should be linked against Copyright (C) 1985-2006, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. sh: /lsftmp/g0306332/inter/fc/bin/ifort --help Executing: /lsftmp/g0306332/inter/fc/bin/ifort --help sh: Intel(R) Fortran Compiler Help ============================== usage: ifort [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .F .FOR .F90 .i .i90), assembly (.s .S), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the ifort.cfg file. Compiler Option List -------------------- Performance ----------- -O1 optimize for maximum speed, but disable some o... ... than 3.2) -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor -[no]threads specify whether or not multi-threaded libraries should be linked against Copyright (C) 1985-2006, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. Trying FC compiler flag -g sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F sh: Added FC compiler flag -g Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/arch.py:39) TESTING: configureArchitecture from PETSc.utilities.arch(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/arch.py:39) Checks PETSC_ARCH and sets if not set Defined "ARCH" to "linux" Defined "ARCH_NAME" to ""linux-nompi-icc"" Substituting "ARCH" with "linux-nompi-icc" ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/sharedLibraries.py:41) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/sharedLibraries.py:41) sh: uname -s Executing: uname -s sh: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "BUILDSHAREDLIB" to "yes" ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/sharedLibraries.py:53) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/sharedLibraries.py:53) Checks whether dynamic libraries should be used, for which you must - Specify --with-dynamic - Have found a working dynamic linker (with dlfcn.h and libdl) Defines PETSC_USE_DYNAMIC_LIBRARIES if they are used Dynamic libraries - disabled ================================================================================ TEST configureBmakeDir from PETSc.utilities.bmakeDir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/bmakeDir.py:26) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/bmakeDir.py:26) Makes bmake/$PETSC_ARCH if it does not exist Changed persistence directory to bmake/linux-nompi-icc sh: /scratch/g0306332/intel/cc/bin/icc --help Executing: /scratch/g0306332/intel/cc/bin/icc --help sh: Intel(R) C Compiler Help ======================== usage: icc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the icc.cfg file. Compiler Option List -------------------- Performance ----------- -O1 optimize for maximum speed, but disable some optimizations... ... efault on systems running a gcc version lower than 3.2) -u pretend the is undefined -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor Copyright (C) 1985-2006, Intel Corporation. All rights reserved. * Other brands and names are the property of their respective owners. ================================================================================ TEST checkRestrict from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:126) TESTING: checkRestrict from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:126) Check for the C/CXX restrict keyword Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: ret = 512 error message = {conftest.c(5): error: expected a ";" float * restrict x;; ^ compilation aborted for conftest.c (code 2) } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:244) TESTING: checkCFormatting from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:244) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:97) TESTING: checkCStaticInline from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:97) Check for C keyword: static inline Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:254) TESTING: checkDynamicLoadFlag from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:254) Checks that dlopen() takes RTLD_GLOBAL, and defines PETSC_HAVE_RTLD_GLOBAL if it does sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl sh: Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:153) TESTING: checkCLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:153) Determines the libraries needed to link with C Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -v -fPIC -wd1572 -g conftest.o -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -v -fPIC -wd1572 -g conftest.o -ldl sh: Possible ERROR while running linker: Version 9.1 /scratch/g0306332/intel/cc/bin/mcpcom -mP1OPT_version=910 -mP1OPT_print_version=FALSE -mP3OPT_use_mspp_call_convention -mCG_use_gas_got_workaround=F "-mGLOB_options_string=-long_double -o conftest -v -fPIC -wd1572 -g -ldl" -mGLOB_position_independent_code -mGLOB_preemption_model=3 -mGLOB_cxx_limited_range=FALSE -mP3OPT_emit_line_numbers -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF20 -mGLOB_as_output_backup_file_name=/tmp/iccJOaH2Ras_.s -mGLOB_machine_model=GLOB_MACHINE_MODEL_IA32_NONE -mIPOPT_ninl_user_level=2 -mIPOPT_activate -mP2OPT_hlo -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_ipo_mo_activate -mIPOPT_ipo_mo_nfiles=1 -mIPOPT_source_files_list=/tmp/icctEJhYslst -mIPOPT_short_data_info=/tmp/iccqFxIe4sdata -mIPOPT_link_script_file=/tmp/iccbYW9uFscript -mIPOPT_global_data "-mIPOPT_link_version=2.14.90.0.4 20030523" "-mIPOPT_cmdline_link="/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o" "--eh-frame-hdr" "-dynamic-linker" "/lib/ld-linux.so.2" "-m" "elf_i386" "-o" "conftest" "conftest.o" "-ldl" "-L/scratch/g0306332/intel/cc/lib" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" "-Bstatic" "-limf" "-Bdynamic" "-lm" "-Bstatic" "-lipgo" "-Bdynamic" "-lgcc_s" "-lgcc" "-Bdynamic" "-Bstatic" "-lirc" "-Bdynamic" "-lc" "-lgcc_s" "-lgcc" "-Bstatic" "-lirc_s" "-Bdynamic" "-ldl" "-lc" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o"" -mIPOPT_save_il0 -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=/tmp/ipo_iccJt5rrg.o "-mGLOB_linker_version=2.14.90.0.4 20030523" -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_obj_output_file=/tmp/ipo_iccJt5rrg.o -mP1OPT_source_file_name=/tmp/ipo_iccJt5rrg.c conftest.o -mIPOPT_object_files=/tmp/iccsFxRHRtxt ld /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o --eh-frame-hdr -dynamic-linker /lib/ld-linux.so.2 -m elf_i386 -o conftest conftest.o -ldl -L/scratch/g0306332/intel/cc/lib -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -Bstatic -limf -Bdynamic -lm -Bstatic -lipgo -Bdynamic -lgcc_s -lgcc -Bdynamic -Bstatic -lirc -Bdynamic -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o rm /tmp/iccylP3aFgnudirs rm /tmp/iccsFxRHRtxt rm /tmp/icctEJhYslst rm /tmp/iccqFxIe4sdata rm /tmp/iccbYW9uFscript rm /tmp/ipo_iccJt5rrg.o rm /tmp/iccGkjCLggas rm /tmp/iccJOaH2Ras_.s rm /tmp/iccCxGNjtldashv rm /tmp/iccbgmLB4gnudirs rm /tmp/iccodpvUFarg output: error message = {Version 9.1 /scratch/g0306332/intel/cc/bin/mcpcom -mP1OPT_version=910 -mP1OPT_print_version=FALSE -mP3OPT_use_mspp_call_convention -mCG_use_gas_got_workaround=F "-mGLOB_options_string=-long_double -o conftest -v -fPIC -wd1572 -g -ldl" -mGLOB_position_independent_code -mGLOB_preemption_model=3 -mGLOB_cxx_limited_range=FALSE -mP3OPT_emit_line_numbers -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF20 -mGLOB_as_output_backup_file_name=/tmp/iccJOaH2Ras_.s -mGLOB_machine_model=GLOB_MACHINE_MODEL_IA32_NONE -mIPOPT_ninl_user_level=2 -mIPOPT_activate -mP2OPT_hlo -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_ipo_mo_activate -mIPOPT_ipo_mo_nfiles=1 -mIPOPT_source_files_list=/tmp/icctEJhYslst -mIPOPT_short_data_info=/tmp/iccqFxIe4sdata -mIPOPT_link_script_file=/tmp/iccbYW9uFscript -mIPOPT_global_data "-mIPOPT_link_version=2.14.90.0.4 20030523" "-mIPOPT_cmdline_link="/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o" "--eh-frame-hdr" "-dynamic-linker" "/lib/ld-linux.so.2" "-m" "elf_i386" "-o" "conftest" "conftest.o" "-ldl" "-L/scratch/g0306332/intel/cc/lib" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" "-Bstatic" "-limf" "-Bdynamic" "-lm" "-Bstatic" "-lipgo" "-Bdynamic" "-lgcc_s" "-lgcc" "-Bdynamic" "-Bstatic" "-lirc" "-Bdynamic" "-lc" "-lgcc_s" "-lgcc" "-Bstatic" "-lirc_s" "-Bdynamic" "-ldl" "-lc" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o"" -mIPOPT_save_il0 -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=/tmp/ipo_iccJt5rrg.o "-mGLOB_linker_version=2.14.90.0.4 20030523" -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_obj_output_file=/tmp/ipo_iccJt5rrg.o -mP1OPT_source_file_name=/tmp/ipo_iccJt5rrg.c conftest.o -mIPOPT_object_files=/tmp/iccsFxRHRtxt ld /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o --eh-frame-hdr -dynamic-linker /lib/ld-linux.so.2 -m elf_i386 -o conftest conftest.o -ldl -L/scratch/g0306332/intel/cc/lib -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -Bstatic -limf -Bdynamic -lm -Bstatic -lipgo -Bdynamic -lgcc_s -lgcc -Bdynamic -Bstatic -lirc -Bdynamic -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o rm /tmp/iccylP3aFgnudirs rm /tmp/iccsFxRHRtxt rm /tmp/icctEJhYslst rm /tmp/iccqFxIe4sdata rm /tmp/iccbYW9uFscript rm /tmp/ipo_iccJt5rrg.o rm /tmp/iccGkjCLggas rm /tmp/iccJOaH2Ras_.s rm /tmp/iccCxGNjtldashv rm /tmp/iccbgmLB4gnudirs rm /tmp/iccodpvUFarg } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -v -fPIC -wd1572 -g conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Checking arg Version compilers: Unknown arg Version compilers: Checking arg 9.1 compilers: Unknown arg 9.1 compilers: Checking arg /scratch/g0306332/intel/cc/bin/mcpcom compilers: Unknown arg /scratch/g0306332/intel/cc/bin/mcpcom compilers: Checking arg -mP1OPT_version=910 compilers: Unknown arg -mP1OPT_version=910 compilers: Checking arg -mP1OPT_print_version=FALSE compilers: Unknown arg -mP1OPT_print_version=FALSE compilers: Checking arg -mP3OPT_use_mspp_call_convention compilers: Unknown arg -mP3OPT_use_mspp_call_convention compilers: Checking arg -mCG_use_gas_got_workaround=F compilers: Unknown arg -mCG_use_gas_got_workaround=F compilers: Checking arg "-mGLOB_options_string=-long_double compilers: Unknown arg "-mGLOB_options_string=-long_double compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -wd1572 compilers: Unknown arg -wd1572 compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg -ldl" compilers: Found library or library directory: -ldl compilers: Checking arg -mGLOB_position_independent_code compilers: Unknown arg -mGLOB_position_independent_code compilers: Checking arg -mGLOB_preemption_model=3 compilers: Unknown arg -mGLOB_preemption_model=3 compilers: Checking arg -mGLOB_cxx_limited_range=FALSE compilers: Unknown arg -mGLOB_cxx_limited_range=FALSE compilers: Checking arg -mP3OPT_emit_line_numbers compilers: Unknown arg -mP3OPT_emit_line_numbers compilers: Checking arg -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL compilers: Unknown arg -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL compilers: Checking arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF20 compilers: Unknown arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF20 compilers: Checking arg -mGLOB_as_output_backup_file_name=/tmp/iccJOaH2Ras_.s compilers: Unknown arg -mGLOB_as_output_backup_file_name=/tmp/iccJOaH2Ras_.s compilers: Checking arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_IA32_NONE compilers: Unknown arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_IA32_NONE compilers: Checking arg -mIPOPT_ninl_user_level=2 compilers: Unknown arg -mIPOPT_ninl_user_level=2 compilers: Checking arg -mIPOPT_activate compilers: Unknown arg -mIPOPT_activate compilers: Checking arg -mP2OPT_hlo compilers: Unknown arg -mP2OPT_hlo compilers: Checking arg -mIPOPT_link compilers: Unknown arg -mIPOPT_link compilers: Checking arg -mIPOPT_ipo_activate compilers: Unknown arg -mIPOPT_ipo_activate compilers: Checking arg -mIPOPT_ipo_mo_activate compilers: Unknown arg -mIPOPT_ipo_mo_activate compilers: Checking arg -mIPOPT_ipo_mo_nfiles=1 compilers: Unknown arg -mIPOPT_ipo_mo_nfiles=1 compilers: Checking arg -mIPOPT_source_files_list=/tmp/icctEJhYslst compilers: Unknown arg -mIPOPT_source_files_list=/tmp/icctEJhYslst compilers: Checking arg -mIPOPT_short_data_info=/tmp/iccqFxIe4sdata compilers: Unknown arg -mIPOPT_short_data_info=/tmp/iccqFxIe4sdata compilers: Checking arg -mIPOPT_link_script_file=/tmp/iccbYW9uFscript compilers: Unknown arg -mIPOPT_link_script_file=/tmp/iccbYW9uFscript compilers: Checking arg -mIPOPT_global_data compilers: Unknown arg -mIPOPT_global_data compilers: Checking arg "-mIPOPT_link_version=2.14.90.0.4 compilers: Unknown arg "-mIPOPT_link_version=2.14.90.0.4 compilers: Checking arg 20030523" compilers: Unknown arg 20030523 compilers: Checking arg "-mIPOPT_cmdline_link="/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o" compilers: Unknown arg -mIPOPT_cmdline_link="/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o compilers: Checking arg "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o" compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o compilers: Checking arg "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o" compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o compilers: Checking arg "--eh-frame-hdr" compilers: Unknown arg --eh-frame-hdr compilers: Checking arg "-dynamic-linker" compilers: Unknown arg -dynamic-linker compilers: Checking arg "/lib/ld-linux.so.2" compilers: Unknown arg /lib/ld-linux.so.2 compilers: Checking arg "-m" compilers: Unknown arg -m compilers: Checking arg "elf_i386" compilers: Unknown arg elf_i386 compilers: Checking arg "-o" compilers: Unknown arg -o compilers: Checking arg "conftest" compilers: Unknown arg conftest compilers: Checking arg "conftest.o" compilers: Unknown arg conftest.o compilers: Checking arg "-ldl" compilers: Checking arg "-L/scratch/g0306332/intel/cc/lib" compilers: Found library or library directory: -L/scratch/g0306332/intel/cc/lib compilers: Checking arg "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" compilers: Found library or library directory: -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ compilers: Checking arg "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" compilers: Found library or library directory: -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-limf" compilers: Found library or library directory: -limf compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lm" compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lipgo" compilers: Found library or library directory: -lipgo compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lgcc_s" compilers: Found library or library directory: -lgcc_s compilers: Checking arg "-lgcc" compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lirc" compilers: Found library or library directory: -lirc compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lc" compilers: Checking arg "-lgcc_s" compilers: Checking arg "-lgcc" compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lirc_s" compilers: Found library or library directory: -lirc_s compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-ldl" compilers: Checking arg "-lc" compilers: Checking arg "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o" compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o compilers: Checking arg "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o"" compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o compilers: Checking arg -mIPOPT_save_il0 compilers: Unknown arg -mIPOPT_save_il0 compilers: Checking arg -mIPOPT_il_in_obj compilers: Unknown arg -mIPOPT_il_in_obj compilers: Checking arg -mIPOPT_ipo_activate_warn=FALSE compilers: Unknown arg -mIPOPT_ipo_activate_warn=FALSE compilers: Checking arg -mIPOPT_obj_output_file_name=/tmp/ipo_iccJt5rrg.o compilers: Unknown arg -mIPOPT_obj_output_file_name=/tmp/ipo_iccJt5rrg.o compilers: Checking arg "-mGLOB_linker_version=2.14.90.0.4 compilers: Unknown arg "-mGLOB_linker_version=2.14.90.0.4 compilers: Checking arg 20030523" compilers: Unknown arg 20030523 compilers: Checking arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Unknown arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Checking arg -mGLOB_obj_output_file=/tmp/ipo_iccJt5rrg.o compilers: Unknown arg -mGLOB_obj_output_file=/tmp/ipo_iccJt5rrg.o compilers: Checking arg -mP1OPT_source_file_name=/tmp/ipo_iccJt5rrg.c compilers: Unknown arg -mP1OPT_source_file_name=/tmp/ipo_iccJt5rrg.c compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -mIPOPT_object_files=/tmp/iccsFxRHRtxt compilers: Unknown arg -mIPOPT_object_files=/tmp/iccsFxRHRtxt compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib/ld-linux.so.2 compilers: Unknown arg /lib/ld-linux.so.2 compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_i386 compilers: Unknown arg elf_i386 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -ldl compilers: Checking arg -L/scratch/g0306332/intel/cc/lib compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -limf compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lm compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lipgo compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lirc compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lc compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lirc_s compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -ldl compilers: Checking arg -lc compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/iccylP3aFgnudirs compilers: Unknown arg /tmp/iccylP3aFgnudirs compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/iccsFxRHRtxt compilers: Unknown arg /tmp/iccsFxRHRtxt compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/icctEJhYslst compilers: Unknown arg /tmp/icctEJhYslst compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/iccqFxIe4sdata compilers: Unknown arg /tmp/iccqFxIe4sdata compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/iccbYW9uFscript compilers: Unknown arg /tmp/iccbYW9uFscript compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ipo_iccJt5rrg.o compilers: Unknown arg /tmp/ipo_iccJt5rrg.o compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/iccGkjCLggas compilers: Unknown arg /tmp/iccGkjCLggas compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/iccJOaH2Ras_.s compilers: Unknown arg /tmp/iccJOaH2Ras_.s compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/iccCxGNjtldashv compilers: Unknown arg /tmp/iccCxGNjtldashv compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/iccbgmLB4gnudirs compilers: Unknown arg /tmp/iccbgmLB4gnudirs compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/iccodpvUFarg compilers: Unknown arg /tmp/iccodpvUFarg compilers: Libraries needed to link C code with another linker: ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s'] compilers: Check that C libraries can be used from Fortran Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F sh: sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language FC ================================================================================ TEST checkFortranTypeSizes from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:405) TESTING: checkFortranTypeSizes from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:405) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F sh: Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:464) TESTING: checkFortranNameMangling from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:464) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Popping language C Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -g conftest.o confc.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -g conftest.o confc.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:497) TESTING: checkFortranNameManglingDouble from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:497) Checks if symbols containing and underscore append and extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Popping language C Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -g conftest.o confc.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -g conftest.o confc.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x39): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.F:2: undefined reference to `d1_chk_' output: ret = 256 error message = {conftest.o(.text+0x39): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.F:2: undefined reference to `d1_chk_' } Pushing language C Popping language C in /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -g conftest.o confc.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: program main call d1_chk() end Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:507) TESTING: checkFortranPreprocessor from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:507) Determine if Fortran handles preprocessing properly Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g -DPTesting conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g -DPTesting conftest.F sh: Added FC compiler flag Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:529) TESTING: checkFortranLibraries from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:529) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -V Executing: /lsftmp/g0306332/inter/fc/bin/ifort -V sh: sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -v -fPIC -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -v -fPIC -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: Version 9.1 /lsftmp/g0306332/inter/fc/bin/fortcom -mP1OPT_version=910 -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mGLOB_tune_for_fort -mGLOB_use_fort_dope_vector -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mP3OPT_use_mspp_call_convention -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE "-mGLOB_options_string=-o conftest -v -fPIC -g -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl" -mGLOB_position_independent_code -mGLOB_preemption_model=3 -mGLOB_cxx_limited_range=FALSE -mP3OPT_emit_line_numbers -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF20 -mGLOB_as_output_backup_file_name=/tmp/ifortwDQyryas_.s -mGLOB_machine_model=GLOB_MACHINE_MODEL_IA32_NONE -mP2OPT_subs_out_of_bound=FALSE -mIPOPT_ninl_user_level=2 -mIPOPT_activate -mP2OPT_hlo -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_ipo_mo_activate -mIPOPT_ipo_mo_nfiles=1 -mIPOPT_source_files_list=/tmp/ifortCoOwpGlst -mIPOPT_short_data_info=/tmp/ifortJUpRpEsdata -mIPOPT_link_script_file=/tmp/ifortM6CcqCscript -mIPOPT_global_data "-mIPOPT_link_version=2.14.90.0.4 20030523" "-mIPOPT_cmdline_link="/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o" "--eh-frame-hdr" "-dynamic-linker" "/lib/ld-linux.so.2" "-m" "elf_i386" "-o" "conftest" "/lsftmp/g0306332/inter/fc/lib/for_main.o" "conftest.o" "-ldl" "-rpath" "/scratch/g0306332/intel/cc/lib" "-L/scratch/g0306332/intel/cc/lib" "-rpath" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" "-rpath" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" "-limf" "-lipgo" "-lgcc_s" "-lirc" "-lirc_s" "-ldl" "-L/lsftmp/g0306332/inter/fc/lib" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" "-Bstatic" "-lifport" "-lifcore" "-limf" "-Bdynamic" "-lm" "-Bstatic" "-lipgo" "-Bdynamic" "-Bstatic" "-lirc" "-Bdynamic" "-lc" "-lgcc_s" "-lgcc" "-Bstatic" "-lirc_s" "-Bdynamic" "-ldl" "-lc" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o"" -mIPOPT_save_il0 -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=/tmp/ipo_ifortqnAToK.o "-mGLOB_linker_version=2.14.90.0.4 20030523" -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_obj_output_file=/tmp/ipo_ifortqnAToK.o -mP1OPT_source_file_name=/tmp/ipo_ifortqnAToK.f conftest.o -mIPOPT_object_files=/tmp/ifortTaScpItxt -mIPOPT_mo_unique_name=7215 ld /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o --eh-frame-hdr -dynamic-linker /lib/ld-linux.so.2 -m elf_i386 -o conftest /lsftmp/g0306332/inter/fc/lib/for_main.o conftest.o -ldl -rpath /scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -rpath /usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -rpath /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl -L/lsftmp/g0306332/inter/fc/lib -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -Bstatic -lifport -lifcore -limf -Bdynamic -lm -Bstatic -lipgo -Bdynamic -Bstatic -lirc -Bdynamic -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o rm /tmp/iforttYzBoMgnudirs rm /tmp/ifortTaScpItxt rm /tmp/ifortCoOwpGlst rm /tmp/ifortJUpRpEsdata rm /tmp/ifortM6CcqCscript rm /tmp/ipo_ifortqnAToK.o rm /tmp/iforttBJyqAgas rm /tmp/ifortwDQyryas_.s rm /tmp/ifortX3wAswldashv rm /tmp/ifortGz4suugnudirs rm /tmp/ifort5iRbxsarg output: error message = {Version 9.1 /lsftmp/g0306332/inter/fc/bin/fortcom -mP1OPT_version=910 -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mGLOB_tune_for_fort -mGLOB_use_fort_dope_vector -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mP3OPT_use_mspp_call_convention -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE "-mGLOB_options_string=-o conftest -v -fPIC -g -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl" -mGLOB_position_independent_code -mGLOB_preemption_model=3 -mGLOB_cxx_limited_range=FALSE -mP3OPT_emit_line_numbers -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF20 -mGLOB_as_output_backup_file_name=/tmp/ifortwDQyryas_.s -mGLOB_machine_model=GLOB_MACHINE_MODEL_IA32_NONE -mP2OPT_subs_out_of_bound=FALSE -mIPOPT_ninl_user_level=2 -mIPOPT_activate -mP2OPT_hlo -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_ipo_mo_activate -mIPOPT_ipo_mo_nfiles=1 -mIPOPT_source_files_list=/tmp/ifortCoOwpGlst -mIPOPT_short_data_info=/tmp/ifortJUpRpEsdata -mIPOPT_link_script_file=/tmp/ifortM6CcqCscript -mIPOPT_global_data "-mIPOPT_link_version=2.14.90.0.4 20030523" "-mIPOPT_cmdline_link="/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o" "--eh-frame-hdr" "-dynamic-linker" "/lib/ld-linux.so.2" "-m" "elf_i386" "-o" "conftest" "/lsftmp/g0306332/inter/fc/lib/for_main.o" "conftest.o" "-ldl" "-rpath" "/scratch/g0306332/intel/cc/lib" "-L/scratch/g0306332/intel/cc/lib" "-rpath" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" "-rpath" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" "-limf" "-lipgo" "-lgcc_s" "-lirc" "-lirc_s" "-ldl" "-L/lsftmp/g0306332/inter/fc/lib" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" "-Bstatic" "-lifport" "-lifcore" "-limf" "-Bdynamic" "-lm" "-Bstatic" "-lipgo" "-Bdynamic" "-Bstatic" "-lirc" "-Bdynamic" "-lc" "-lgcc_s" "-lgcc" "-Bstatic" "-lirc_s" "-Bdynamic" "-ldl" "-lc" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o" "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o"" -mIPOPT_save_il0 -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=/tmp/ipo_ifortqnAToK.o "-mGLOB_linker_version=2.14.90.0.4 20030523" -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_obj_output_file=/tmp/ipo_ifortqnAToK.o -mP1OPT_source_file_name=/tmp/ipo_ifortqnAToK.f conftest.o -mIPOPT_object_files=/tmp/ifortTaScpItxt -mIPOPT_mo_unique_name=7215 ld /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o --eh-frame-hdr -dynamic-linker /lib/ld-linux.so.2 -m elf_i386 -o conftest /lsftmp/g0306332/inter/fc/lib/for_main.o conftest.o -ldl -rpath /scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -rpath /usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -rpath /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl -L/lsftmp/g0306332/inter/fc/lib -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -Bstatic -lifport -lifcore -limf -Bdynamic -lm -Bstatic -lipgo -Bdynamic -Bstatic -lirc -Bdynamic -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o rm /tmp/iforttYzBoMgnudirs rm /tmp/ifortTaScpItxt rm /tmp/ifortCoOwpGlst rm /tmp/ifortJUpRpEsdata rm /tmp/ifortM6CcqCscript rm /tmp/ipo_ifortqnAToK.o rm /tmp/iforttBJyqAgas rm /tmp/ifortwDQyryas_.s rm /tmp/ifortX3wAswldashv rm /tmp/ifortGz4suugnudirs rm /tmp/ifort5iRbxsarg } Pushing language C Popping language C in /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -v -fPIC -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: program main end Popping language FC compilers: Checking arg Version compilers: Unknown arg Version compilers: Checking arg 9.1 compilers: Unknown arg 9.1 compilers: Checking arg /lsftmp/g0306332/inter/fc/bin/fortcom compilers: Unknown arg /lsftmp/g0306332/inter/fc/bin/fortcom compilers: Checking arg -mP1OPT_version=910 compilers: Unknown arg -mP1OPT_version=910 compilers: Checking arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Unknown arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Checking arg -mGLOB_tune_for_fort compilers: Unknown arg -mGLOB_tune_for_fort compilers: Checking arg -mGLOB_use_fort_dope_vector compilers: Unknown arg -mGLOB_use_fort_dope_vector compilers: Checking arg -mP2OPT_static_promotion compilers: Unknown arg -mP2OPT_static_promotion compilers: Checking arg -mP1OPT_print_version=FALSE compilers: Unknown arg -mP1OPT_print_version=FALSE compilers: Checking arg -mP3OPT_use_mspp_call_convention compilers: Unknown arg -mP3OPT_use_mspp_call_convention compilers: Checking arg -mCG_use_gas_got_workaround=F compilers: Unknown arg -mCG_use_gas_got_workaround=F compilers: Checking arg -mP2OPT_align_option_used=TRUE compilers: Unknown arg -mP2OPT_align_option_used=TRUE compilers: Checking arg "-mGLOB_options_string=-o compilers: Unknown arg "-mGLOB_options_string=-o compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg -ldl compilers: Found library or library directory: -ldl compilers: Checking arg -Wl,-rpath,/scratch/g0306332/intel/cc/lib compilers: Unknown arg -Wl,-rpath,/scratch/g0306332/intel/cc/lib compilers: Checking arg -L/scratch/g0306332/intel/cc/lib compilers: Found library or library directory: -L/scratch/g0306332/intel/cc/lib compilers: Checking arg -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ compilers: Found library or library directory: -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ compilers: Checking arg -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ compilers: Found library or library directory: -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ compilers: Checking arg -limf compilers: Found library or library directory: -limf compilers: Checking arg -lipgo compilers: Found library or library directory: -lipgo compilers: Checking arg -lgcc_s compilers: Found library or library directory: -lgcc_s compilers: Checking arg -lirc compilers: Found library or library directory: -lirc compilers: Checking arg -lirc_s compilers: Found library or library directory: -lirc_s compilers: Checking arg -ldl" compilers: Checking arg -mGLOB_position_independent_code compilers: Unknown arg -mGLOB_position_independent_code compilers: Checking arg -mGLOB_preemption_model=3 compilers: Unknown arg -mGLOB_preemption_model=3 compilers: Checking arg -mGLOB_cxx_limited_range=FALSE compilers: Unknown arg -mGLOB_cxx_limited_range=FALSE compilers: Checking arg -mP3OPT_emit_line_numbers compilers: Unknown arg -mP3OPT_emit_line_numbers compilers: Checking arg -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL compilers: Unknown arg -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL compilers: Checking arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF20 compilers: Unknown arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF20 compilers: Checking arg -mGLOB_as_output_backup_file_name=/tmp/ifortwDQyryas_.s compilers: Unknown arg -mGLOB_as_output_backup_file_name=/tmp/ifortwDQyryas_.s compilers: Checking arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_IA32_NONE compilers: Unknown arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_IA32_NONE compilers: Checking arg -mP2OPT_subs_out_of_bound=FALSE compilers: Unknown arg -mP2OPT_subs_out_of_bound=FALSE compilers: Checking arg -mIPOPT_ninl_user_level=2 compilers: Unknown arg -mIPOPT_ninl_user_level=2 compilers: Checking arg -mIPOPT_activate compilers: Unknown arg -mIPOPT_activate compilers: Checking arg -mP2OPT_hlo compilers: Unknown arg -mP2OPT_hlo compilers: Checking arg -mIPOPT_link compilers: Unknown arg -mIPOPT_link compilers: Checking arg -mIPOPT_ipo_activate compilers: Unknown arg -mIPOPT_ipo_activate compilers: Checking arg -mIPOPT_ipo_mo_activate compilers: Unknown arg -mIPOPT_ipo_mo_activate compilers: Checking arg -mIPOPT_ipo_mo_nfiles=1 compilers: Unknown arg -mIPOPT_ipo_mo_nfiles=1 compilers: Checking arg -mIPOPT_source_files_list=/tmp/ifortCoOwpGlst compilers: Unknown arg -mIPOPT_source_files_list=/tmp/ifortCoOwpGlst compilers: Checking arg -mIPOPT_short_data_info=/tmp/ifortJUpRpEsdata compilers: Unknown arg -mIPOPT_short_data_info=/tmp/ifortJUpRpEsdata compilers: Checking arg -mIPOPT_link_script_file=/tmp/ifortM6CcqCscript compilers: Unknown arg -mIPOPT_link_script_file=/tmp/ifortM6CcqCscript compilers: Checking arg -mIPOPT_global_data compilers: Unknown arg -mIPOPT_global_data compilers: Checking arg "-mIPOPT_link_version=2.14.90.0.4 compilers: Unknown arg "-mIPOPT_link_version=2.14.90.0.4 compilers: Checking arg 20030523" compilers: Unknown arg 20030523 compilers: Checking arg "-mIPOPT_cmdline_link="/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o" compilers: Unknown arg -mIPOPT_cmdline_link="/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o compilers: Checking arg "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o" compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o compilers: Checking arg "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o" compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o compilers: Checking arg "--eh-frame-hdr" compilers: Unknown arg --eh-frame-hdr compilers: Checking arg "-dynamic-linker" compilers: Unknown arg -dynamic-linker compilers: Checking arg "/lib/ld-linux.so.2" compilers: Unknown arg /lib/ld-linux.so.2 compilers: Checking arg "-m" compilers: Unknown arg -m compilers: Checking arg "elf_i386" compilers: Unknown arg elf_i386 compilers: Checking arg "-o" compilers: Unknown arg -o compilers: Checking arg "conftest" compilers: Unknown arg conftest compilers: Checking arg "/lsftmp/g0306332/inter/fc/lib/for_main.o" compilers: Unknown arg /lsftmp/g0306332/inter/fc/lib/for_main.o compilers: Checking arg "conftest.o" compilers: Unknown arg conftest.o compilers: Checking arg "-ldl" compilers: Checking arg "-rpath" compilers: Found -rpath library: "/scratch/g0306332/intel/cc/lib" compilers: Checking arg "-L/scratch/g0306332/intel/cc/lib" compilers: Checking arg "-rpath" compilers: Found -rpath library: "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" compilers: Checking arg "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" compilers: Checking arg "-rpath" compilers: Found -rpath library: "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" compilers: Checking arg "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" compilers: Checking arg "-limf" compilers: Checking arg "-lipgo" compilers: Checking arg "-lgcc_s" compilers: Checking arg "-lirc" compilers: Checking arg "-lirc_s" compilers: Checking arg "-ldl" compilers: Checking arg "-L/lsftmp/g0306332/inter/fc/lib" compilers: Found library or library directory: -L/lsftmp/g0306332/inter/fc/lib compilers: Checking arg "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" compilers: Checking arg "-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lifport" compilers: Found library or library directory: -lifport compilers: Checking arg "-lifcore" compilers: Found library or library directory: -lifcore compilers: Checking arg "-limf" compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lm" compilers: Found library or library directory: -lm compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lipgo" compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lirc" compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lc" compilers: Checking arg "-lgcc_s" compilers: Checking arg "-lgcc" compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lirc_s" compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-ldl" compilers: Checking arg "-lc" compilers: Checking arg "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o" compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o compilers: Checking arg "/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o"" compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o compilers: Checking arg -mIPOPT_save_il0 compilers: Unknown arg -mIPOPT_save_il0 compilers: Checking arg -mIPOPT_il_in_obj compilers: Unknown arg -mIPOPT_il_in_obj compilers: Checking arg -mIPOPT_ipo_activate_warn=FALSE compilers: Unknown arg -mIPOPT_ipo_activate_warn=FALSE compilers: Checking arg -mIPOPT_obj_output_file_name=/tmp/ipo_ifortqnAToK.o compilers: Unknown arg -mIPOPT_obj_output_file_name=/tmp/ipo_ifortqnAToK.o compilers: Checking arg "-mGLOB_linker_version=2.14.90.0.4 compilers: Unknown arg "-mGLOB_linker_version=2.14.90.0.4 compilers: Checking arg 20030523" compilers: Unknown arg 20030523 compilers: Checking arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Unknown arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Checking arg -mGLOB_obj_output_file=/tmp/ipo_ifortqnAToK.o compilers: Unknown arg -mGLOB_obj_output_file=/tmp/ipo_ifortqnAToK.o compilers: Checking arg -mP1OPT_source_file_name=/tmp/ipo_ifortqnAToK.f compilers: Unknown arg -mP1OPT_source_file_name=/tmp/ipo_ifortqnAToK.f compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -mIPOPT_object_files=/tmp/ifortTaScpItxt compilers: Unknown arg -mIPOPT_object_files=/tmp/ifortTaScpItxt compilers: Checking arg -mIPOPT_mo_unique_name=7215 compilers: Unknown arg -mIPOPT_mo_unique_name=7215 compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crt1.o compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crti.o compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtbegin.o compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib/ld-linux.so.2 compilers: Unknown arg /lib/ld-linux.so.2 compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_i386 compilers: Unknown arg elf_i386 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg /lsftmp/g0306332/inter/fc/lib/for_main.o compilers: Unknown arg /lsftmp/g0306332/inter/fc/lib/for_main.o compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -ldl compilers: Checking arg -rpath compilers: Found -rpath library: /scratch/g0306332/intel/cc/lib compilers: Checking arg -L/scratch/g0306332/intel/cc/lib compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/gcc-lib/i386-pc-linux/3.2.3/ compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ compilers: Checking arg -limf compilers: Checking arg -lipgo compilers: Checking arg -lgcc_s compilers: Checking arg -lirc compilers: Checking arg -lirc_s compilers: Checking arg -ldl compilers: Checking arg -L/lsftmp/g0306332/inter/fc/lib compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ compilers: Checking arg -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lifport compilers: Checking arg -lifcore compilers: Checking arg -limf compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lm compilers: Found library or library directory: -lm compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lipgo compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lirc compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lc compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lirc_s compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -ldl compilers: Checking arg -lc compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/crtend.o compilers: Checking arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o compilers: Unknown arg /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../crtn.o compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/iforttYzBoMgnudirs compilers: Unknown arg /tmp/iforttYzBoMgnudirs compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ifortTaScpItxt compilers: Unknown arg /tmp/ifortTaScpItxt compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ifortCoOwpGlst compilers: Unknown arg /tmp/ifortCoOwpGlst compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ifortJUpRpEsdata compilers: Unknown arg /tmp/ifortJUpRpEsdata compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ifortM6CcqCscript compilers: Unknown arg /tmp/ifortM6CcqCscript compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ipo_ifortqnAToK.o compilers: Unknown arg /tmp/ipo_ifortqnAToK.o compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/iforttBJyqAgas compilers: Unknown arg /tmp/iforttBJyqAgas compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ifortwDQyryas_.s compilers: Unknown arg /tmp/ifortwDQyryas_.s compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ifortX3wAswldashv compilers: Unknown arg /tmp/ifortX3wAswldashv compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ifortGz4suugnudirs compilers: Unknown arg /tmp/ifortGz4suugnudirs compilers: Checking arg rm compilers: Unknown arg rm compilers: Checking arg /tmp/ifort5iRbxsarg compilers: Unknown arg /tmp/ifort5iRbxsarg compilers: Libraries needed to link Fortran code with the C linker: ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C compilers: Check for Intel PEPCF90 library Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl -lPEPCF90 -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl -lPEPCF90 -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm sh: Possible ERROR while running linker: IPO link: can not find -lPEPCF90 icc: error: problem during multi-file optimization compilation (code 1) output: ret = 256 error message = {IPO link: can not find -lPEPCF90 icc: error: problem during multi-file optimization compilation (code 1) } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl -lPEPCF90 -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Intel PEPCF90 library does not exist ================================================================================ TEST checkFortran90 from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:821) TESTING: checkFortran90 from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:821) Determine whether the Fortran compiler handles F90 Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F sh: Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran90Interface from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:868) TESTING: checkFortran90Interface from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:868) Check for custom F90 interfaces, such as that provided by PETSc ================================================================================ TEST setupFrameworkCompilers from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:932) TESTING: setupFrameworkCompilers from config.compilers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/compilers.py:932) ================================================================================ TEST configureLibrary from PETSc.packages.Mathematica(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/Mathematica.py:15) TESTING: configureLibrary from PETSc.packages.Mathematica(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/packages/Mathematica.py:15) Find a Mathematica installation and check if it can work with PETSc ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/fortranCPP.py:26) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/fortranCPP.py:26) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:60) TESTING: checkStdC from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:60) sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/... ... re__)); extern char *rindex (__const char *__s, int __c) __attribute__ ((__pure__)); extern int ffs (int __i) __attribute__ ((__const__)); # 285 "/usr/include/string.h" 3 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__pure__)); # 305 "/usr/include/string.h" 3 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) ; # 348 "/usr/include/string.h" 3 # 378 "/usr/include/string.h" 3 # 4 "conftest.c" 2 sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/... ... s, size_t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; # 870 "/usr/include/stdlib.h" 3 # 901 "/usr/include/stdlib.h" 3 # 911 "/usr/include/stdlib.h" 3 extern int getloadavg (double __loadavg[], int __nelem) ; # 4 "conftest.c" 2 sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:93) TESTING: checkStat from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:93) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/u... ... e_t __mode, __dev_t *__dev) ; extern __inline__ int stat (__const char *__path, struct stat *__statbuf) { return __xstat (3, __path, __statbuf); } extern __inline__ int lstat (__const char *__path, struct stat *__statbuf) { return __lxstat (3, __path, __statbuf); } extern __inline__ int fstat (int __fd, struct stat *__statbuf) { return __fxstat (3, __fd, __statbuf); } extern __inline__ int mknod (__const char *__path, __mode_t __mode, __dev_t __dev) { return __xmknod (1, __path, __mode, &__dev); } # 405 "/usr/include/sys/stat.h" 3 # 6 "conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:128) TESTING: checkSysWait from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:128) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:150) TESTING: checkTime from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:150) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/in... ... t timespec *__tp) ; # 350 "/usr/include/time.h" 3 extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) ; extern int timer_delete (timer_t __timerid) ; extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) ; extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) ; extern int timer_getoverrun (timer_t __timerid) ; # 397 "/usr/include/time.h" 3 # 412 "/usr/include/time.h" 3 # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/... ... rval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) ; extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) ; extern int utimes (__const char *__file, __const struct timeval __tvp[2]) ; extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) ; extern int futimes (int __fd, __const struct timeval __tvp[2]) ; # 180 "/usr/include/sys/time.h" 3 # 4 "conftest.c" 2 Defined "HAVE_SYS_TIME_H" to "1" sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "dos.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "dos.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/in... ... " 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/include/sys/cdefs.h" 3 # 101 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 137 "/usr/include/sys/cdefs.h" 3 # 198 "/usr/include/sys/cdefs.h" 3 # 228 "/usr/include/sys/cdefs.h" 3 # 259 "/usr/include/sys/cdefs.h" 3 # 296 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 23 "/usr/include/endian.h" 2 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 4 "conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/i... ... tl.h" 3 # 170 "/usr/include/bits/fcntl.h" 3 # 180 "/usr/include/bits/fcntl.h" 3 extern ssize_t readahead (int __fd, __off64_t __offset, size_t __count) ; # 34 "/usr/include/fcntl.h" 2 3 # 50 "/usr/include/fcntl.h" 3 extern int fcntl (int __fd, int __cmd, ...); extern int open (__const char *__file, int __oflag, ...); # 83 "/usr/include/fcntl.h" 3 extern int creat (__const char *__file, __mode_t __mode); # 102 "/usr/include/fcntl.h" 3 extern int lockf (int __fd, int __cmd, __off_t __len); # 131 "/usr/include/fcntl.h" 3 # 172 "/usr/include/fcntl.h" 3 # 4 "conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/scratch/g0306332/intel/cc/include/float.h" 1 3 # 30 "/scratch/g0306332/intel/cc/include/float.h" 3 # 42 "/scratch/g0306332/intel/cc/include/float.h" 3 # 54 "/scratch/g0306332/intel/cc/include/float.h" 3 # 64 "/scratch/g0306332/intel/cc/include/float.h" 3 # 4 "conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "io.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "io.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/scratch/g0306332/intel/cc/include/limits.h" 1 3 # 1 "/usr/include/limits.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cd... ... lude/bits/local_lim.h" 2 3 # 131 "/usr/include/bits/posix1_lim.h" 2 3 # 145 "/usr/include/limits.h" 2 3 # 1 "/usr/include/bits/posix2_lim.h" 1 3 # 87 "/usr/include/bits/posix2_lim.h" 3 # 149 "/usr/include/limits.h" 2 3 # 23 "/scratch/g0306332/intel/cc/include/limits.h" 2 3 # 42 "/scratch/g0306332/intel/cc/include/limits.h" 3 # 85 "/scratch/g0306332/intel/cc/include/limits.h" 3 # 96 "/scratch/g0306332/intel/cc/include/limits.h" 3 # 120 "/scratch/g0306332/intel/cc/include/limits.h" 3 # 4 "conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 # 1 "/scratch/g0306332/intel/cc/include/stddef.h" 1 3 typedef int ptrdiff_t; typedef unsigned size_t; typedef long int wchar_t; # 47 "/usr/include/malloc.h" 2 3 # 55 "/usr/include/malloc.h" 3 # 63 "/usr/include/malloc.h" 3 # 75 "/usr/include/malloc.h" 3 # 104 "/usr/include/malloc.h" 3 # 112 "/usr/include/malloc.h" 3 extern void * malloc (size_t __size) ; extern void * calloc (size_t __nmemb, size_t __size) ; extern void * realloc... ... sable_size (void * __ptr) ; extern void malloc_stats (void) ; extern void * malloc_get_state (void) ; extern int malloc_set_state (void * __ptr) ; extern void (*__malloc_initialize_hook) (void); extern void (*__free_hook) (void * __ptr, __const void *); extern void * (*__malloc_hook) (size_t __size, __const void *); extern void * (*__realloc_hook) (void * __ptr, size_t __size, __const void *); extern void * (*__memalign_hook) (size_t __alignment, size_t __size, __const void *); extern void (*__after_morecore_hook) (void); extern void __malloc_check_init (void) ; # 4 "conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/inc... ... (__uid_t __uid, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwnam_r (__const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 183 "/usr/include/pwd.h" 3 # 4 "conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/search.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/in... ... __compar); extern void *tdelete (__const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value, int __level); extern void twalk (__const void *__root, __action_fn_t __action); # 161 "/usr/include/search.h" 3 extern void *lfind (__const void *__key, __const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (__const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 4 "conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr... ... _t __n) __attribute__ ((__pure__)); extern void bcopy (__const void *__src, void *__dest, size_t __n) ; extern void bzero (void *__s, size_t __n) ; extern int ffs (int __i) __attribute__ ((const)); extern char *index (__const char *__s, int __c) __attribute__ ((__pure__)); extern char *rindex (__const char *__s, int __c) __attribute__ ((__pure__)); extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__pure__)); # 4 "conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/... ... id) __attribute__ ((__const__)); extern int truncate (__const char *__file, __off_t __length) ; # 890 "/usr/include/unistd.h" 3 extern int ftruncate (int __fd, __off_t __length) ; # 905 "/usr/include/unistd.h" 3 extern int getdtablesize (void) ; extern int brk (void *__addr) ; extern void *sbrk (intptr_t __delta) ; extern long int syscall (long int __sysno, ...) ; extern int lockf (int __fd, int __cmd, __off_t __len); # 975 "/usr/include/unistd.h" 3 # 989 "/usr/include/unistd.h" 3 extern int fdatasync (int __fildes) ; # 1015 "/usr/include/unistd.h" 3 # 4 "conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "machine/endian.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "machine/endian.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 # 1 "/scratch/g0306332/intel/cc/include/limits.h" 1 3 # 1 "/usr/include/limits.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 ... ... nsigned int pthread_key_t; typedef struct { int __m_reserved; int __m_count; _pthread_descr __m_owner; int __m_kind; struct _pthread_fastlock __m_lock; } pthread_mutex_t; typedef struct { int __mutexkind; } pthread_mutexattr_t; typedef int pthread_once_t; # 128 "/usr/include/bits/pthreadtypes.h" 3 # 147 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; # 267 "/usr/include/sys/types.h" 2 3 # 43 "/usr/include/sys/param.h" 2 3 # 62 "/usr/include/sys/param.h" 3 # 4 "conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/... ... f_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned short int pr_uid; unsigned short int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; # 4 "conftest.c" 2 Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/... ... edef int __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) ; # 66 "/usr/include/sys/resource.h" 3 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) ; # 86 "/usr/include/sys/resource.h" 3 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) ; extern int getpriority (__priority_which_t __which, id_t __who) ; extern int setpriority (__priority_which_t __which, id_t __who, int __prio) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "sys/systeminfo.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "sys/systeminfo.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/u... ... 64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; __extension__ typedef int __intptr_t; __extension__ typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 typedef __clock_t clock_t; # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 # 126 "/usr/include/time.h" 3 # 416 "/usr/include/time.h" 3 # 30 "/usr/include/sys/times.h" 2 3 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "... ... clude/sys/cdefs.h" 3 # 259 "/usr/include/sys/cdefs.h" 3 # 296 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/sys/utsname.h" 2 3 # 1 "/usr/include/bits/utsname.h" 1 3 # 31 "/usr/include/sys/utsname.h" 2 3 # 47 "/usr/include/sys/utsname.h" 3 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; extern int uname (struct utsname *__name) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/... ... re__)); extern char *rindex (__const char *__s, int __c) __attribute__ ((__pure__)); extern int ffs (int __i) __attribute__ ((__const__)); # 285 "/usr/include/string.h" 3 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__pure__)); # 305 "/usr/include/string.h" 3 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) ; # 348 "/usr/include/string.h" 3 # 378 "/usr/include/string.h" 3 # 4 "conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/... ... s, size_t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; # 870 "/usr/include/stdlib.h" 3 # 901 "/usr/include/stdlib.h" 3 # 911 "/usr/include/stdlib.h" 3 extern int getloadavg (double __loadavg[], int __nelem) ; # 4 "conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/us... ... extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) ; extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) ; extern int listen (int __fd, int __n) ; extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern int shutdown (int __fd, int __how) ; extern int isfdtype (int __fd, int __fdtype) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/us... ... tions); # 1 "/usr/include/bits/siginfo.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 26 "/usr/include/bits/siginfo.h" 2 3 # 39 "/usr/include/bits/siginfo.h" 3 # 259 "/usr/include/bits/siginfo.h" 3 # 140 "/usr/include/sys/wait.h" 2 3 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options, struct rusage * __usage) ; struct rusage; extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options, struct rusage *__usage) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/us... ... nst__)); # 1 "/usr/include/bits/byteswap.h" 1 3 # 57 "/usr/include/bits/byteswap.h" 3 # 104 "/usr/include/bits/byteswap.h" 3 # 117 "/usr/include/bits/byteswap.h" 3 # 132 "/usr/include/bits/byteswap.h" 3 # 274 "/usr/include/netinet/in.h" 2 3 # 295 "/usr/include/netinet/in.h" 3 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) ; extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) ; struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; # 386 "/usr/include/netinet/in.h" 3 # 4 "conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/us... ... clude/netdb.h" 3 # 596 "/usr/include/netdb.h" 3 extern int getaddrinfo (__const char *__restrict __name, __const char *__restrict __service, __const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) ; extern __const char *gai_strerror (int __ecode) ; extern int getnameinfo (__const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, unsigned int __flags); # 661 "/usr/include/netdb.h" 3 # 4 "conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "Direct.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "Direct.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/in... ... t timespec *__tp) ; # 350 "/usr/include/time.h" 3 extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) ; extern int timer_delete (timer_t __timerid) ; extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) ; extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) ; extern int timer_getoverrun (timer_t __timerid) ; # 397 "/usr/include/time.h" 3 # 412 "/usr/include/time.h" 3 # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "Ws2tcpip.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "Ws2tcpip.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/u... ... ad_cond_t; typedef struct { int __dummy; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef struct { int __m_reserved; int __m_count; _pthread_descr __m_owner; int __m_kind; struct _pthread_fastlock __m_lock; } pthread_mutex_t; typedef struct { int __mutexkind; } pthread_mutexattr_t; typedef int pthread_once_t; # 128 "/usr/include/bits/pthreadtypes.h" 3 # 147 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; # 267 "/usr/include/sys/types.h" 2 3 # 4 "conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "WindowsX.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "WindowsX.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "cxxabi.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "cxxabi.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "dos.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "dos.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/in... ... " 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/include/sys/cdefs.h" 3 # 101 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 137 "/usr/include/sys/cdefs.h" 3 # 198 "/usr/include/sys/cdefs.h" 3 # 228 "/usr/include/sys/cdefs.h" 3 # 259 "/usr/include/sys/cdefs.h" 3 # 296 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 23 "/usr/include/endian.h" 2 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 4 "conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/i... ... tl.h" 3 # 170 "/usr/include/bits/fcntl.h" 3 # 180 "/usr/include/bits/fcntl.h" 3 extern ssize_t readahead (int __fd, __off64_t __offset, size_t __count) ; # 34 "/usr/include/fcntl.h" 2 3 # 50 "/usr/include/fcntl.h" 3 extern int fcntl (int __fd, int __cmd, ...); extern int open (__const char *__file, int __oflag, ...); # 83 "/usr/include/fcntl.h" 3 extern int creat (__const char *__file, __mode_t __mode); # 102 "/usr/include/fcntl.h" 3 extern int lockf (int __fd, int __cmd, __off_t __len); # 131 "/usr/include/fcntl.h" 3 # 172 "/usr/include/fcntl.h" 3 # 4 "conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/scratch/g0306332/intel/cc/include/float.h" 1 3 # 30 "/scratch/g0306332/intel/cc/include/float.h" 3 # 42 "/scratch/g0306332/intel/cc/include/float.h" 3 # 54 "/scratch/g0306332/intel/cc/include/float.h" 3 # 64 "/scratch/g0306332/intel/cc/include/float.h" 3 # 4 "conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "io.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "io.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/scratch/g0306332/intel/cc/include/limits.h" 1 3 # 1 "/usr/include/limits.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cd... ... lude/bits/local_lim.h" 2 3 # 131 "/usr/include/bits/posix1_lim.h" 2 3 # 145 "/usr/include/limits.h" 2 3 # 1 "/usr/include/bits/posix2_lim.h" 1 3 # 87 "/usr/include/bits/posix2_lim.h" 3 # 149 "/usr/include/limits.h" 2 3 # 23 "/scratch/g0306332/intel/cc/include/limits.h" 2 3 # 42 "/scratch/g0306332/intel/cc/include/limits.h" 3 # 85 "/scratch/g0306332/intel/cc/include/limits.h" 3 # 96 "/scratch/g0306332/intel/cc/include/limits.h" 3 # 120 "/scratch/g0306332/intel/cc/include/limits.h" 3 # 4 "conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 # 1 "/scratch/g0306332/intel/cc/include/stddef.h" 1 3 typedef int ptrdiff_t; typedef unsigned size_t; typedef long int wchar_t; # 47 "/usr/include/malloc.h" 2 3 # 55 "/usr/include/malloc.h" 3 # 63 "/usr/include/malloc.h" 3 # 75 "/usr/include/malloc.h" 3 # 104 "/usr/include/malloc.h" 3 # 112 "/usr/include/malloc.h" 3 extern void * malloc (size_t __size) ; extern void * calloc (size_t __nmemb, size_t __size) ; extern void * realloc... ... sable_size (void * __ptr) ; extern void malloc_stats (void) ; extern void * malloc_get_state (void) ; extern int malloc_set_state (void * __ptr) ; extern void (*__malloc_initialize_hook) (void); extern void (*__free_hook) (void * __ptr, __const void *); extern void * (*__malloc_hook) (size_t __size, __const void *); extern void * (*__realloc_hook) (void * __ptr, size_t __size, __const void *); extern void * (*__memalign_hook) (size_t __alignment, size_t __size, __const void *); extern void (*__after_morecore_hook) (void); extern void __malloc_check_init (void) ; # 4 "conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/inc... ... (__uid_t __uid, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwnam_r (__const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 183 "/usr/include/pwd.h" 3 # 4 "conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/search.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/in... ... __compar); extern void *tdelete (__const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value, int __level); extern void twalk (__const void *__root, __action_fn_t __action); # 161 "/usr/include/search.h" 3 extern void *lfind (__const void *__key, __const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (__const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 4 "conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr... ... _t __n) __attribute__ ((__pure__)); extern void bcopy (__const void *__src, void *__dest, size_t __n) ; extern void bzero (void *__s, size_t __n) ; extern int ffs (int __i) __attribute__ ((const)); extern char *index (__const char *__s, int __c) __attribute__ ((__pure__)); extern char *rindex (__const char *__s, int __c) __attribute__ ((__pure__)); extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__pure__)); # 4 "conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/... ... id) __attribute__ ((__const__)); extern int truncate (__const char *__file, __off_t __length) ; # 890 "/usr/include/unistd.h" 3 extern int ftruncate (int __fd, __off_t __length) ; # 905 "/usr/include/unistd.h" 3 extern int getdtablesize (void) ; extern int brk (void *__addr) ; extern void *sbrk (intptr_t __delta) ; extern long int syscall (long int __sysno, ...) ; extern int lockf (int __fd, int __cmd, __off_t __len); # 975 "/usr/include/unistd.h" 3 # 989 "/usr/include/unistd.h" 3 extern int fdatasync (int __fildes) ; # 1015 "/usr/include/unistd.h" 3 # 4 "conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "machine/endian.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "machine/endian.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 # 1 "/scratch/g0306332/intel/cc/include/limits.h" 1 3 # 1 "/usr/include/limits.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 ... ... nsigned int pthread_key_t; typedef struct { int __m_reserved; int __m_count; _pthread_descr __m_owner; int __m_kind; struct _pthread_fastlock __m_lock; } pthread_mutex_t; typedef struct { int __mutexkind; } pthread_mutexattr_t; typedef int pthread_once_t; # 128 "/usr/include/bits/pthreadtypes.h" 3 # 147 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; # 267 "/usr/include/sys/types.h" 2 3 # 43 "/usr/include/sys/param.h" 2 3 # 62 "/usr/include/sys/param.h" 3 # 4 "conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/... ... f_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned short int pr_uid; unsigned short int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; # 4 "conftest.c" 2 Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/... ... edef int __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) ; # 66 "/usr/include/sys/resource.h" 3 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) ; # 86 "/usr/include/sys/resource.h" 3 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) ; extern int getpriority (__priority_which_t __which, id_t __who) ; extern int setpriority (__priority_which_t __which, id_t __who, int __prio) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "sys/systeminfo.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "sys/systeminfo.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/u... ... 64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; __extension__ typedef int __intptr_t; __extension__ typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 typedef __clock_t clock_t; # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 # 126 "/usr/include/time.h" 3 # 416 "/usr/include/time.h" 3 # 30 "/usr/include/sys/times.h" 2 3 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "... ... clude/sys/cdefs.h" 3 # 259 "/usr/include/sys/cdefs.h" 3 # 296 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 319 "/usr/include/features.h" 2 3 # 27 "/usr/include/sys/utsname.h" 2 3 # 1 "/usr/include/bits/utsname.h" 1 3 # 31 "/usr/include/sys/utsname.h" 2 3 # 47 "/usr/include/sys/utsname.h" 3 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; extern int uname (struct utsname *__name) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/... ... re__)); extern char *rindex (__const char *__s, int __c) __attribute__ ((__pure__)); extern int ffs (int __i) __attribute__ ((__const__)); # 285 "/usr/include/string.h" 3 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__pure__)); # 305 "/usr/include/string.h" 3 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) ; # 348 "/usr/include/string.h" 3 # 378 "/usr/include/string.h" 3 # 4 "conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/... ... s, size_t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; # 870 "/usr/include/stdlib.h" 3 # 901 "/usr/include/stdlib.h" 3 # 911 "/usr/include/stdlib.h" 3 extern int getloadavg (double __loadavg[], int __nelem) ; # 4 "conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/us... ... extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) ; extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) ; extern int listen (int __fd, int __n) ; extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern int shutdown (int __fd, int __how) ; extern int isfdtype (int __fd, int __fdtype) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/us... ... tions); # 1 "/usr/include/bits/siginfo.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 26 "/usr/include/bits/siginfo.h" 2 3 # 39 "/usr/include/bits/siginfo.h" 3 # 259 "/usr/include/bits/siginfo.h" 3 # 140 "/usr/include/sys/wait.h" 2 3 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options, struct rusage * __usage) ; struct rusage; extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options, struct rusage *__usage) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/us... ... nst__)); # 1 "/usr/include/bits/byteswap.h" 1 3 # 57 "/usr/include/bits/byteswap.h" 3 # 104 "/usr/include/bits/byteswap.h" 3 # 117 "/usr/include/bits/byteswap.h" 3 # 132 "/usr/include/bits/byteswap.h" 3 # 274 "/usr/include/netinet/in.h" 2 3 # 295 "/usr/include/netinet/in.h" 3 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) ; extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) ; struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; # 386 "/usr/include/netinet/in.h" 3 # 4 "conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/us... ... clude/netdb.h" 3 # 596 "/usr/include/netdb.h" 3 extern int getaddrinfo (__const char *__restrict __name, __const char *__restrict __service, __const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) ; extern __const char *gai_strerror (int __ecode) ; extern int getnameinfo (__const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, unsigned int __flags); # 661 "/usr/include/netdb.h" 3 # 4 "conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "Direct.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "Direct.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/in... ... t timespec *__tp) ; # 350 "/usr/include/time.h" 3 extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) ; extern int timer_delete (timer_t __timerid) ; extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) ; extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) ; extern int timer_getoverrun (timer_t __timerid) ; # 397 "/usr/include/time.h" 3 # 412 "/usr/include/time.h" 3 # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "Ws2tcpip.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "Ws2tcpip.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/u... ... ad_cond_t; typedef struct { int __dummy; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef struct { int __m_reserved; int __m_count; _pthread_descr __m_owner; int __m_kind; struct _pthread_fastlock __m_lock; } pthread_mutex_t; typedef struct { int __mutexkind; } pthread_mutexattr_t; typedef int pthread_once_t; # 128 "/usr/include/bits/pthreadtypes.h" 3 # 147 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; # 267 "/usr/include/sys/types.h" 2 3 # 4 "conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "WindowsX.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "WindowsX.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) TESTING: check from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:38) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "cxxabi.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "cxxabi.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST checkRecursiveMacros from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:158) TESTING: checkRecursiveMacros from config.headers(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/headers.py:158) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: ================================================================================ TEST checkMemcmp from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:79) TESTING: checkMemcmp from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:79) Check for 8-bit clean memcmp sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: ================================================================================ TEST checkSysinfo from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:102) TESTING: checkSysinfo from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:102) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for function sysinfo sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_SYSINFO" to "1" Checking for header: linux/kernel.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/linux/kernel.h" 1 3 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 4 "conftest.c" 2 Defined "HAVE_LINUX_KERNEL_H" to "1" Checking for header: sys/sysinfo.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/sysinfo.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/u... ... d long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 26 "/usr/include/sys/sysinfo.h" 2 3 extern int sysinfo (struct sysinfo *__info) ; extern int get_nprocs_conf (void) ; extern int get_nprocs (void) ; extern long int get_phys_pages (void) ; extern long int get_avphys_pages (void) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "sys/systeminfo.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "sys/systeminfo.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: ret = 1024 error message = {conftest.c(13): catastrophic error: #error directive: "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ compilation aborted for conftest.c (code 4) } Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } ================================================================================ TEST checkVPrintf from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:125) Checking for function vprintf sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_VPRINTF" to "1" sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(8): warning #267: the format string requires additional arguments vprintf( "%d", Argp ); ^ conftest.c(8): warning #592: variable "Argp" is used before its value is set vprintf( "%d", Argp ); ^ } Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } ================================================================================ TEST checkFreeReturnType from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:142) TESTING: checkFreeReturnType from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:142) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: ret = 512 error message = {conftest.c(6): warning #592: variable "p" is used before its value is set int ierr; void *p; ierr = free(p); return 0; ^ conftest.c(6): error: a value of type "void" cannot be assigned to an entity of type "int" int ierr; void *p; ierr = free(p); return 0; ^ compilation aborted for conftest.c (code 2) } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `sbreak' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `sbreak' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `task_info' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `task_info' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_access' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_access' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_getcwd' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_getcwd' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: the `getwd' function is dangerous and should not be used. output: error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: the `getwd' function is dangerous and should not be used. } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getwd) || defined (__stub___getwd) choke me #else getwd(); #endif ; return 0; } Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `PXFGETARG' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `PXFGETARG' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_SIGSET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_sleep' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_sleep' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_snprintf' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_snprintf' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_fullpath' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_fullpath' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_lseek' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_lseek' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `stricmp' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `stricmp' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE__INTEL_FAST_MEMCPY" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE__INTEL_FAST_MEMSET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_access' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_access' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_getcwd' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_getcwd' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: the `getwd' function is dangerous and should not be used. output: error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: the `getwd' function is dangerous and should not be used. } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getwd) || defined (__stub___getwd) choke me #else getwd(); #endif ; return 0; } Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `PXFGETARG' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `PXFGETARG' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_SIGSET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_sleep' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_sleep' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_snprintf' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_snprintf' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_fullpath' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_fullpath' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_lseek' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_lseek' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `stricmp' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `stricmp' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE__INTEL_FAST_MEMCPY" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE__INTEL_FAST_MEMSET" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `sbreak' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `sbreak' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `task_info' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `task_info' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "sigfpe.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "sigfpe.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "fpxcp.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "fpxcp.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c(3): error #5: could not open source file "floatingpoint.h" #include ^ ret = 512 error message = {conftest.c(3): error #5: could not open source file "floatingpoint.h" #include ^ } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/fortranCommandLine.py:26) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/fortranCommandLine.py:26) Check for the mechanism to retrieve command line arguments in Fortran Pushing language C Checking for function _gfortran_iargc sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_gfortran_iargc' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:20: undefined reference to `_gfortran_iargc' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _gfortran_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) choke me #else _gfortran_iargc(); #endif ; return 0; } Checking for function ipxfargc_ sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm sh: Defined "HAVE_IPXFARGC_" to "1" Defined "HAVE_PXFGETARG_NEW" to "1" Popping language C ================================================================================ TEST checkSizeTypes from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:44) TESTING: checkSizeTypes from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:44) Checks for types associated with sizes, such as size_t. Checking for type: size_t sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: size_t found ================================================================================ TEST checkFileTypes from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:49) TESTING: checkFileTypes from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:49) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: mode_t found Checking for type: off_t sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: off_t found ================================================================================ TEST checkPID from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:55) TESTING: checkPID from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:55) Checks for pid_t, and defines it if necessary Checking for type: pid_t sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: pid_t found ================================================================================ TEST checkUID from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:59) TESTING: checkUID from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:59) Checks for uid_t and gid_t, and defines them if necessary sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 sys/types.h ================================================================================ TEST checkSignal from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:66) TESTING: checkSignal from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:66) Checks the return type of signal() and defines RETSIGTYPE to that type name sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:87) TESTING: checkC99Complex from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:87) Check for complex numbers in in C99 std sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkFortranKind from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:117) TESTING: checkFortranKind from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:117) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F sh: Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:129) TESTING: checkFortranDReal from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:129) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F Executing: /lsftmp/g0306332/inter/fc/bin/ifort -c -o conftest.o -fPIC -g conftest.F sh: Possible ERROR while running compiler: error message = {fortcom: Warning: conftest.F, line 3: This argument's data type is incompatible with this intrinsic procedure; procedure assumed EXTERNAL. [DREAL] d = dreal(3.0) ----------------^ } Source: program main double precision d d = dreal(3.0) end Pushing language C Popping language C sh: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x46): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.F:3: undefined reference to `dreal_' output: ret = 256 error message = {conftest.o(.text+0x46): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.F:3: undefined reference to `dreal_' } Pushing language C Popping language C in /lsftmp/g0306332/inter/fc/bin/ifort -o conftest -fPIC -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: program main double precision d d = dreal(3.0) end Defined "MISSING_DREAL" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:137) TESTING: checkConst from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:137) Checks for working const, and if not found defines it to empty string sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(25): warning #592: variable "x" is used before its value is set if (x[0]); ^ conftest.c(30): warning #592: variable "t" is used before its value is set *t++ = 0; ^ conftest.c(46): warning #592: variable "b" is used before its value is set struct s *b; b->j = 5; ^ } Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:193) TESTING: checkEndian from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:193) If the machine is big endian, defines WORDS_BIGENDIAN sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: ret = 512 error message = {conftest.c(11): error: identifier "not" is undefined not big endian ^ conftest.c(11): error: expected a ";" not big endian ^ compilation aborted for conftest.c (code 2) } Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_VOID_P" to "4" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_LONG" to "4" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) TESTING: checkSizeof from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:246) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:288) TESTING: checkBitsPerByte from config.types(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/types.py:288) Determine the nubmer of bits per byte and define BITS_PER_BYTE sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST configureScalarType from PETSc.utilities.scalarTypes(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/scalarTypes.py:30) TESTING: configureScalarType from PETSc.utilities.scalarTypes(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/scalarTypes.py:30) Choose between real and complex numbers Scalar type is real ================================================================================ TEST configurePrecision from PETSc.utilities.scalarTypes(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/scalarTypes.py:46) TESTING: configurePrecision from PETSc.utilities.scalarTypes(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/scalarTypes.py:46) Set the default real number precision for PETSc objects Precision is double ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: IPO link: can not find -lsocket icc: error: problem during multi-file optimization compilation (code 1) output: ret = 256 error message = {IPO link: can not find -lsocket icc: error: problem during multi-file optimization compilation (code 1) } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -lfpe -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -lfpe -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: IPO link: can not find -lfpe icc: error: problem during multi-file optimization compilation (code 1) output: ret = 256 error message = {IPO link: can not find -lfpe icc: error: problem during multi-file optimization compilation (code 1) } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -lfpe -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: IPO link: can not find -lsocket icc: error: problem during multi-file optimization compilation (code 1) output: ret = 256 error message = {IPO link: can not find -lsocket icc: error: problem during multi-file optimization compilation (code 1) } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) TESTING: check from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:108) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -lfpe -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -lfpe -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: IPO link: can not find -lfpe icc: error: problem during multi-file optimization compilation (code 1) output: ret = 256 error message = {IPO link: can not find -lfpe icc: error: problem during multi-file optimization compilation (code 1) } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -lfpe -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST checkMath from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:177) TESTING: checkMath from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:177) Check for sin() in libm, the math library Checking for functions ['sin', 'floor', 'log10', 'pow'] in library [''] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(7): warning #592: variable "x" is used before its value is set double x; sin(x); ^ } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); int main() { double x; sin(x); ; return 0; } Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Popping language C Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(7): warning #592: variable "x" is used before its value is set double x; floor(x); ^ } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double floor(double); int main() { double x; floor(x); ; return 0; } Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Popping language C Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(7): warning #592: variable "x" is used before its value is set double x; log10(x); ^ } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double log10(double); int main() { double x; log10(x); ; return 0; } Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Popping language C Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(7): warning #592: variable "x" is used before its value is set double x,y ; y = pow(x, x); ^ } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double pow(double, double); int main() { double x,y ; y = pow(x, x); ; return 0; } Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:193) TESTING: checkMathErf from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:193) Check for erf() in libm, the math library Checking for functions ['erf'] in library [] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c(7): warning #592: variable "x" is used before its value is set double x; erf(x); ^ } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); int main() { double x; erf(x); ; return 0; } Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkDynamic from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:202) TESTING: checkDynamic from config.libraries(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/libraries.py:202) Check for the header and libraries necessary for dynamic library manipulation Checking for functions ['dlopen'] in library ['dl'] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Popping language C Checking for header: dlfcn.h sh: /scratch/g0306332/intel/cc/bin/icc -E conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -E conftest.c sh: # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 105 "/usr/include/features.h" 3 # 123 "/usr/include/features.h" 3 # 143 "/usr/include/features.h" 3 # 153 "/usr/include/features.h" 3 # 174 "/usr/include/features.h" 3 # 213 "/usr/include/features.h" 3 # 280 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 49 "/usr/include/sys/cdefs.h" 3 # 66 "/usr/include/sys/cdefs.h" 3 # 86 "/usr/inc... ... n.h" 2 3 # 1 "/scratch/g0306332/intel/cc/include/stddef.h" 1 3 typedef int ptrdiff_t; typedef unsigned size_t; typedef long int wchar_t; # 26 "/usr/include/dlfcn.h" 2 3 # 1 "/usr/include/bits/dlfcn.h" 1 3 # 29 "/usr/include/dlfcn.h" 2 3 # 43 "/usr/include/dlfcn.h" 3 extern void *dlopen (__const char *__file, int __mode) ; extern int dlclose (void *__handle) ; extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) ; # 67 "/usr/include/dlfcn.h" 3 extern char *dlerror (void) ; # 155 "/usr/include/dlfcn.h" 3 # 4 "conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST alternateConfigureLibrary from config.packages.Boost(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/package.py:355) TESTING: alternateConfigureLibrary from config.packages.Boost(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/package.py:355) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureLibrary from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:384) TESTING: configureLibrary from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:384) ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root (HPUX) ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libveclib.a'] ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lveclib -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lveclib -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: IPO link: can not find -lveclib icc: error: problem during multi-file optimization compilation (code 1) output: ret = 256 error message = {IPO link: can not find -lveclib icc: error: problem during multi-file optimization compilation (code 1) } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lveclib -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root (F2C) ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libf2cblas.a'] ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf2cblas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf2cblas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: IPO link: can not find -lf2cblas icc: error: problem during multi-file optimization compilation (code 1) output: ret = 256 error message = {IPO link: can not find -lf2cblas icc: error: problem during multi-file optimization compilation (code 1) } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf2cblas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libfblas.a'] ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lfblas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lfblas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: IPO link: can not find -lfblas icc: error: problem during multi-file optimization compilation (code 1) output: ret = 256 error message = {IPO link: can not find -lfblas icc: error: problem during multi-file optimization compilation (code 1) } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lfblas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified ATLAS Linux installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libcblas.a', '/lsftmp/g0306332/inter/mkl/lib/32/libf77blas.a', '/lsftmp/g0306332/inter/mkl/lib/32/libatlas.a'] ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -latlas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -latlas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_LIBCBLAS" to "1" Defined "HAVE_LIBF77BLAS" to "1" Defined "HAVE_LIBATLAS" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/liblapack.a'] ['/lsftmp/g0306332/inter/mkl/lib/32/libcblas.a', '/lsftmp/g0306332/inter/mkl/lib/32/libf77blas.a', '/lsftmp/g0306332/inter/mkl/lib/32/libatlas.a', '-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -latlas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -latlas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x9): In function `xerbla_': : undefined reference to `s_wsfe' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x1c): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x2f): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x34): In function `xerbla_': : undefined reference to `e_wsfe' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x43): In function `xerbla_': : undefined reference to `s_stop' output: ret = 256 error message = {/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x9): In function `xerbla_': : undefined reference to `s_wsfe' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x1c): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x2f): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x34): In function `xerbla_': : undefined reference to `e_wsfe' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x43): In function `xerbla_': : undefined reference to `s_stop' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -latlas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Popping language C Checking for functions ['dgeev'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/liblapack.a'] ['/lsftmp/g0306332/inter/mkl/lib/32/libcblas.a', '/lsftmp/g0306332/inter/mkl/lib/32/libf77blas.a', '/lsftmp/g0306332/inter/mkl/lib/32/libatlas.a', '-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -latlas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -latlas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:7: undefined reference to `dgeev_' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:7: undefined reference to `dgeev_' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lcblas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -latlas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified ATLAS Linux installation root ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libf77blas.a', '/lsftmp/g0306332/inter/mkl/lib/32/libatlas.a'] ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -latlas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -latlas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_LIBF77BLAS" to "1" Defined "HAVE_LIBATLAS" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/liblapack.a'] ['/lsftmp/g0306332/inter/mkl/lib/32/libf77blas.a', '/lsftmp/g0306332/inter/mkl/lib/32/libatlas.a', '-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -latlas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -latlas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//liblapack.a(ATL_dgetrs.o)(.text+0xa7): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//liblapack.a(ATL_dgetrs.o)(.text+0xd7): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//liblapack.a(ATL_dgetrs.o)(.text+0x112): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//liblapack.a(ATL_dgetrs.o)(.text+0x142): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//liblapack.a(ATL_dgetrs.o)(.text+0x1b9): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//liblapack.a(ATL_dgetrs.o)(.text+0x229): more undefined references to `cblas_dtrsm' follow /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x9): In function `xerbla_': : undefined reference to `s_wsfe' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x1c): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x2f): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x34): In function `xerbla_': : undefined reference to `e_wsfe' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x43): In function `xerbla_': : undefined reference to `s_stop' output: ret = 256 error message = {/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//liblapack.a(ATL_dgetrs.o)(.text+0xa7): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//liblapack.a(ATL_dgetrs.o)(.text+0xd7): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//liblapack.a(ATL_dgetrs.o)(.text+0x112): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//liblapack.a(ATL_dgetrs.o)(.text+0x142): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//liblapack.a(ATL_dgetrs.o)(.text+0x1b9): In function `ATL_dgetrs': : undefined reference to `cblas_dtrsm' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//liblapack.a(ATL_dgetrs.o)(.text+0x229): more undefined references to `cblas_dtrsm' follow /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x9): In function `xerbla_': : undefined reference to `s_wsfe' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x1c): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x2f): In function `xerbla_': : undefined reference to `do_fio' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x34): In function `xerbla_': : undefined reference to `e_wsfe' /usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../..//libf77blas.a(xerbla.o)(.text+0x43): In function `xerbla_': : undefined reference to `s_stop' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -latlas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Popping language C Checking for functions ['dgeev'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/liblapack.a'] ['/lsftmp/g0306332/inter/mkl/lib/32/libf77blas.a', '/lsftmp/g0306332/inter/mkl/lib/32/libatlas.a', '-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -latlas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -latlas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:7: undefined reference to `dgeev_' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:7: undefined reference to `dgeev_' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -llapack -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lf77blas -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -latlas -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified AMD ACML lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/lib/libacml.a'] ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32/lib -L/lsftmp/g0306332/inter/mkl/lib/32/lib -lacml -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32/lib -L/lsftmp/g0306332/inter/mkl/lib/32/lib -lacml -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: IPO link: can not find -lacml icc: error: problem during multi-file optimization compilation (code 1) output: ret = 256 error message = {IPO link: can not find -lacml icc: error: problem during multi-file optimization compilation (code 1) } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32/lib -L/lsftmp/g0306332/inter/mkl/lib/32/lib -lacml -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-x86 lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_def.a', 'guide', 'pthread'] ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lpthread -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lpthread -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `vslDeleteStream' /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `viRngUniformBits' /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `vslNewStream' output: ret = 256 error message = {/lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `vslDeleteStream' /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `viRngUniformBits' /lsftmp/g0306332/inter/mkl/lib/32/libmkl_def.so: undefined reference to `vslNewStream' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_def -lguide -lpthread -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-ia64 lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_ipf.a', 'guide', 'pthread'] ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ipf -lguide -lpthread -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ipf -lguide -lpthread -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: IPO link: can not find -lmkl_ipf icc: error: problem during multi-file optimization compilation (code 1) output: ret = 256 error message = {IPO link: can not find -lmkl_ipf icc: error: problem during multi-file optimization compilation (code 1) } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ipf -lguide -lpthread -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Linux-em64t lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_em64t.a', 'guide', 'pthread'] ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_em64t -lguide -lpthread -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_em64t -lguide -lpthread -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: IPO link: can not find -lmkl_em64t icc: error: problem during multi-file optimization compilation (code 1) output: ret = 256 error message = {IPO link: can not find -lmkl_em64t icc: error: problem during multi-file optimization compilation (code 1) } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_em64t -lguide -lpthread -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified MKL Mac-x86 lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkLib from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:94) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_ia32.a', 'guide'] ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_IA32" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_ia32.a', 'guide'] ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_IA32" to "1" Popping language C ================================================================================ TEST checkESSL from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:434) TESTING: checkESSL from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:434) Check for the IBM ESSL library Checking for functions ['iessl'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_ia32.a', 'guide'] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:7: undefined reference to `iessl' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:7: undefined reference to `iessl' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); int main() { iessl() ; return 0; } Popping language C ================================================================================ TEST checkPESSL from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:440) TESTING: checkPESSL from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:440) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions ['pdgemm'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_ia32.a', 'guide'] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:7: undefined reference to `pdgemm' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:7: undefined reference to `pdgemm' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pdgemm(); int main() { pdgemm() ; return 0; } Popping language C ================================================================================ TEST checkMissing from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:446) TESTING: checkMissing from config.packages.BlasLapack(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/BlasLapack.py:446) Check for missing LAPACK routines Checking for functions ['dgesvd'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_ia32.a', 'guide'] ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_IA32" to "1" Popping language C Checking for functions ['dgeev'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_ia32.a', 'guide'] ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_IA32" to "1" Popping language C Checking for functions ['dgetrf'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_ia32.a', 'guide'] ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_IA32" to "1" Popping language C Checking for functions ['dpotrf'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_ia32.a', 'guide'] ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_IA32" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_ia32.a', 'guide'] ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_IA32" to "1" Popping language C Checking for functions ['dpotrs'] in library ['/lsftmp/g0306332/inter/mkl/lib/32/libmkl_lapack.a', 'libmkl_ia32.a', 'guide'] ['-ldl', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-L/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-limf', '-lipgo', '-lgcc_s', '-lirc', '-lirc_s', '-Wl,-rpath,"/scratch/g0306332/intel/cc/lib"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/"', '-Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../"', '-Wl,-rpath,/lsftmp/g0306332/inter/fc/lib', '-L/lsftmp/g0306332/inter/fc/lib', '-lifport', '-lifcore', '-lm', '-Wl,-rpath,/scratch/g0306332/intel/cc/lib', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/', '-Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../', '-lm'] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Defined "HAVE_LIBMKL_LAPACK" to "1" Defined "HAVE_LIBMKL_IA32" to "1" Popping language C ================================================================================ TEST configureTimers from PETSc.utilities.timer(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_GETCLOCK PETSC_USE_DCLOCK PETSC_USE_NT_TIME. Checking for functions ['MPI_CRAY_barrier'] in library [''] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:7: undefined reference to `MPI_CRAY_barrier' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:7: undefined reference to `MPI_CRAY_barrier' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); int main() { MPI_CRAY_barrier() ; return 0; } Popping language C Cray-MPI test failure ================================================================================ TEST alternateConfigureLibrary from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:195) TESTING: alternateConfigureLibrary from config.packages.MPI(/lsftmp/g0306332/petsc-2.3.2-p8/python/BuildSystem/config/packages/MPI.py:195) Setup MPIUNI, our uniprocessor version of MPI Defined "HAVE_MPIUNI" to "1" Defined make macro "MPIRUN" to "${PETSC_DIR}/bin/mpirun.uni" Defined "HAVE_MPI_COMM_F2C" to "1" Defined "HAVE_MPI_COMM_C2F" to "1" Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:35) TESTING: configureMissingDefines from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:35) Checks for limits sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:45) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:45) Checks if u_short is undefined sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:51) TESTING: configureMissingFunctions from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:51) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:71) TESTING: configureMissingSignals from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:71) Check for missing signals, and define MISSING_ if necessary sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: ================================================================================ TEST configureMissingPrototypes from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:88) TESTING: configureMissingPrototypes from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:88) sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:110) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/missing.py:110) Added prototype #include void *_intel_fast_memcpy(void *,const void *,size_t); to language C Added prototype #include void *_intel_fast_memset(void *, int, size_t); to language C ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/libraryOptions.py:46) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/libraryOptions.py:46) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Checking for functions ['bgl_perfctr_void'] in library [''] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:7: undefined reference to `bgl_perfctr_void' output: ret = 256 error message = {conftest.o(.text+0x1f): In function `main': /nas/lsftmp/g0306332/petsc-2.3.2-p8/conftest.c:7: undefined reference to `bgl_perfctr_void' } Pushing language C Popping language C in /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); int main() { bgl_perfctr_void() ; return 0; } Popping language C BGL/IBM test failure Defined "USE_32BIT_INT" to "1" ================================================================================ TEST configureISColorValueType from PETSc.utilities.libraryOptions(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/libraryOptions.py:98) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/libraryOptions.py:98) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_CHAR" Defined "IS_COLORING_MAX" to "255" Defined "IS_COLOR_VALUE_TYPE" to "char" ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.TetGen(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.TetGen(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spai(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.spai(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need Sowing ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.babel(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.babel(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.UMFPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.UMFPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.hypre(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.hypre(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ccafe(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.ccafe(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Sieve(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Sieve(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PARTY(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Triangle(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Triangle(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spooles(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.spooles(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ParMetis(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.ParMetis(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Prometheus(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Prometheus(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Matlab(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sprng(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.sprng(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Chaco(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.fftw(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.fftw(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.blacs(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.blacs(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SCALAPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.SCALAPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MUMPS(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.MUMPS(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need c2html ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.FIAT(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.FIAT(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sundials(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.sundials(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MPE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.MPE(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ml(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.ml(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.blopex(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.blopex(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PLAPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) TESTING: alternateConfigureLibrary from PETSc.packages.PLAPACK(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/package.py:343) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need Lgrind ================================================================================ TEST configureRegression from PETSc.utilities.Regression(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Regression.py:32) TESTING: configureRegression from PETSc.utilities.Regression(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/utilities/Regression.py:32) Output a file listing the jobs that should be run by the PETSc buildtest Defined make macro "TEST_RUNS" to " C_X11_MPIUni Fortran_MPIUni" ================================================================================ TEST configureInline from PETSc.Configure(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/Configure.py:212) TESTING: configureInline from PETSc.Configure(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/Configure.py:212) Get a generic inline keyword, depending on the language Defined "STATIC_INLINE" to "static inline" Defined "RESTRICT" to " __restrict__" ================================================================================ TEST configureSolaris from PETSc.Configure(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/Configure.py:222) TESTING: configureSolaris from PETSc.Configure(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/Configure.py:222) Solaris specific stuff ================================================================================ TEST configureLinux from PETSc.Configure(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/Configure.py:236) TESTING: configureLinux from PETSc.Configure(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/Configure.py:236) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ================================================================================ TEST configureWin32 from PETSc.Configure(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/Configure.py:242) TESTING: configureWin32 from PETSc.Configure(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/Configure.py:242) Win32 non-cygwin specific stuff Checking for functions ['GetComputerName'] in library ['Kernel32.lib'] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: ret = 1024 error message = {conftest.c(4): catastrophic error: could not open source file "Windows.h" #include ^ compilation aborted for conftest.c (code 4) } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetComputerName(NULL,NULL);; return 0; } Compile failed inside link Popping language C Checking for functions ['GetComputerName'] in library ['kernel32'] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: ret = 1024 error message = {conftest.c(4): catastrophic error: could not open source file "Windows.h" #include ^ compilation aborted for conftest.c (code 4) } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetComputerName(NULL,NULL);; return 0; } Compile failed inside link Popping language C Checking for functions ['GetUserName'] in library ['Advapi32.lib'] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: ret = 1024 error message = {conftest.c(4): catastrophic error: could not open source file "Windows.h" #include ^ compilation aborted for conftest.c (code 4) } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetUserName(NULL,NULL);; return 0; } Compile failed inside link Popping language C Checking for functions ['GetUserName'] in library ['advapi32'] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: ret = 1024 error message = {conftest.c(4): catastrophic error: could not open source file "Windows.h" #include ^ compilation aborted for conftest.c (code 4) } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetUserName(NULL,NULL);; return 0; } Compile failed inside link Popping language C Checking for functions ['GetDC'] in library ['User32.lib'] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: ret = 1024 error message = {conftest.c(4): catastrophic error: could not open source file "Windows.h" #include ^ compilation aborted for conftest.c (code 4) } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetDC(0);; return 0; } Compile failed inside link Popping language C Checking for functions ['GetDC'] in library ['user32'] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: ret = 1024 error message = {conftest.c(4): catastrophic error: could not open source file "Windows.h" #include ^ compilation aborted for conftest.c (code 4) } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetDC(0);; return 0; } Compile failed inside link Popping language C Checking for functions ['CreateCompatibleDC'] in library ['Gdi32.lib'] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: ret = 1024 error message = {conftest.c(4): catastrophic error: could not open source file "Windows.h" #include ^ compilation aborted for conftest.c (code 4) } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { CreateCompatibleDC(0);; return 0; } Compile failed inside link Popping language C Checking for functions ['CreateCompatibleDC'] in library ['gdi32'] [] Pushing language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: ret = 1024 error message = {conftest.c(4): catastrophic error: could not open source file "Windows.h" #include ^ compilation aborted for conftest.c (code 4) } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { CreateCompatibleDC(0);; return 0; } Compile failed inside link Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Pushing language C Popping language C sh: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl Executing: /scratch/g0306332/intel/cc/bin/icc -o conftest -fPIC -wd1572 -g conftest.o -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl sh: sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "Windows.h" #include ^ compilation aborted for conftest.c (code 4) } Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } sh: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c Executing: /scratch/g0306332/intel/cc/bin/icc -c -o conftest.o -fPIC -wd1572 -g conftest.c sh: Possible ERROR while running compiler: ret = 1024 error message = {conftest.c(3): catastrophic error: could not open source file "Windows.h" #include ^ compilation aborted for conftest.c (code 4) } Source: #include "confdefs.h" #include "conffix.h" #include int main() { ; return 0; } Defined "PATH_SEPARATOR" to "':'" Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" ================================================================================ TEST configureDefaults from PETSc.Configure(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/Configure.py:299) TESTING: configureDefaults from PETSc.Configure(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/Configure.py:299) ================================================================================ TEST configureScript from PETSc.Configure(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/Configure.py:313) TESTING: configureScript from PETSc.Configure(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/Configure.py:313) Output a script in the bmake directory which will reproduce the configuration ================================================================================ TEST configureInstall from PETSc.Configure(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/Configure.py:341) TESTING: configureInstall from PETSc.Configure(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/Configure.py:341) Setup the directories for installation ================================================================================ TEST configureGCOV from PETSc.Configure(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/Configure.py:349) TESTING: configureGCOV from PETSc.Configure(/lsftmp/g0306332/petsc-2.3.2-p8/python/PETSc/Configure.py:349) Pushing language C Defined make macro "CC_FLAGS" to " -fPIC -wd1572 -g " Popping language C Defined make macro "CPP_FLAGS" to "" Pushing language C Defined make macro "PCC" to "/scratch/g0306332/intel/cc/bin/icc" Defined make macro "PCC_FLAGS" to " -fPIC -wd1572 -g " Popping language C Defined make macro "CC_SUFFIX" to "o" Pushing language C Defined make macro "PCC_LINKER" to "/scratch/g0306332/intel/cc/bin/icc" Defined make macro "PCC_LINKER_FLAGS" to " -fPIC -wd1572 -g " Popping language C Defined make macro "CC_LINKER_SUFFIX" to "" Defined make macro "PCC_LINKER_LIBS" to "-ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl " Pushing language FC Defined "HAVE_FORTRAN" to "1" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to " -fPIC -g " Popping language FC Defined make macro "FC_SUFFIX" to "o" Pushing language FC sh: /lsftmp/g0306332/inter/fc/bin/ifort -V Executing: /lsftmp/g0306332/inter/fc/bin/ifort -V sh: Defined make macro "FC_LINKER" to "/lsftmp/g0306332/inter/fc/bin/ifort" Defined make macro "FC_LINKER_FLAGS" to " -fPIC -g " Popping language FC Defined make macro "FC_LINKER_SUFFIX" to "" Defined make macro "FC_LINKER_LIBS" to "-ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl " Pushing language C Defined make macro "SL_LINKER" to "/scratch/g0306332/intel/cc/bin/icc" Defined make macro "SL_LINKER_FLAGS" to " -fPIC -wd1572 -g " Popping language C Defined make macro "SL_LINKER_SUFFIX" to "so" sh: uname -s Executing: uname -s sh: Linux Defined make macro "SL_LINKER_LIBS" to "-ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl " Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" sh: CC -V Executing: CC -V sh: Defined "USE_SOCKET_VIEWER" to "1" Defined "HAVE_MPI" to "1" Defined make macro "MPI_LIB" to "-Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8/lib/linux-nompi-icc -L/nas/lsftmp/g0306332/petsc-2.3.2-p8/lib/linux-nompi-icc -lmpiuni" Defined make macro "MPI_INCLUDE" to "-I/nas/lsftmp/g0306332/petsc-2.3.2-p8/include/mpiuni" Defined "HAVE_BLASLAPACK" to "1" Defined make macro "BLASLAPACK_LIB" to "-Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide" Defined make macro "BLASLAPACK_INCLUDE" to "" Defined make macro "PACKAGES_LIBS" to "${MPI_LIB} ${BLASLAPACK_LIB}" Defined make macro "PACKAGES_INCLUDES" to "${MPI_INCLUDE} ${BLASLAPACK_INCLUDE}" Defined make macro "INSTALL_DIR" to "/nas/lsftmp/g0306332/petsc-2.3.2-p8" Defined make macro "top_builddir" to "/nas/lsftmp/g0306332/petsc-2.3.2-p8" Defined make macro "CONFIGURE_OPTIONS" to "--with-cc=/scratch/g0306332/intel/cc/bin/icc --with-fc=/lsftmp/g0306332/inter/fc/bin/ifort --with-blas-lapack-dir=/lsftmp/g0306332/inter/mkl/lib/32 --with-mpi=0 --with-x=0 --with-shared" ================================================================================ Pushing language C Popping language C Pushing language FC Popping language FC Compilers: C Compiler: /scratch/g0306332/intel/cc/bin/icc -fPIC -wd1572 -g Fortran Compiler: /lsftmp/g0306332/inter/fc/bin/ifort -fPIC -g Linkers: Shared linker: /scratch/g0306332/intel/cc/bin/icc -shared -fPIC -wd1572 -g Dynamic linker: /scratch/g0306332/intel/cc/bin/icc -shared -fPIC -wd1572 -g PETSc: PETSC_ARCH: linux-nompi-icc PETSC_DIR: /nas/lsftmp/g0306332/petsc-2.3.2-p8 ** ** Now build and test the libraries with "make all test" ** Clanguage: C Scalar type:real PETSc shared libraries: enabled PETSc dynamic libraries: disabled BLAS/LAPACK: -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide **** bmake/linux-nompi-icc/petscconf **** GDB = /usr/bin/gdb AR_FLAGS = cr PETSC_LANGUAGE = CONLY FC_LINKER_FLAGS = -fPIC -g FPP_FLAGS = SL_LINKER = /scratch/g0306332/intel/cc/bin/icc CC_FLAGS = -fPIC -wd1572 -g FC_LINKER = /lsftmp/g0306332/inter/fc/bin/ifort PCC_FLAGS = -fPIC -wd1572 -g INSTALL_DIR = /nas/lsftmp/g0306332/petsc-2.3.2-p8 PCC_LINKER = /scratch/g0306332/intel/cc/bin/icc PACKAGES_LIBS = ${MPI_LIB} ${BLASLAPACK_LIB} PCC_LINKER_FLAGS = -fPIC -wd1572 -g FC_FLAGS = -fPIC -g BLASLAPACK_LIB = -Wl,-rpath,/lsftmp/g0306332/inter/mkl/lib/32 -L/lsftmp/g0306332/inter/mkl/lib/32 -lmkl_lapack -lmkl_ia32 -lguide FC_LINKER_SUFFIX = PETSC_PRECISION = double PCC = /scratch/g0306332/intel/cc/bin/icc SL_LINKER_LIBS = -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl PCC_LINKER_LIBS = -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl FC_LINKER_LIBS = -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -Wl,-rpath,"/scratch/g0306332/intel/cc/lib" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/" -Wl,-rpath,"/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../" -Wl,-rpath,/lsftmp/g0306332/inter/fc/lib -L/lsftmp/g0306332/inter/fc/lib -lifport -lifcore -lm -Wl,-rpath,/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -lm -ldl -Wl,-rpath,/scratch/g0306332/intel/cc/lib -L/scratch/g0306332/intel/cc/lib -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/ -Wl,-rpath,/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -L/usr/lib/gcc-lib/i386-pc-linux/3.2.3/../../../ -limf -lipgo -lgcc_s -lirc -lirc_s -ldl MPI_LIB = -Wl,-rpath,/nas/lsftmp/g0306332/petsc-2.3.2-p8/lib/linux-nompi-icc -L/nas/lsftmp/g0306332/petsc-2.3.2-p8/lib/linux-nompi-icc -lmpiuni BLASLAPACK_INCLUDE = SL_LINKER_FLAGS = -fPIC -wd1572 -g CC_LINKER_SUFFIX = CC_SUFFIX = o PACKAGES_INCLUDES = ${MPI_INCLUDE} ${BLASLAPACK_INCLUDE} CONFIGURE_OPTIONS = --with-cc=/scratch/g0306332/intel/cc/bin/icc --with-fc=/lsftmp/g0306332/inter/fc/bin/ifort --with-blas-lapack-dir=/lsftmp/g0306332/inter/mkl/lib/32 --with-mpi=0 --with-x=0 --with-shared SL_LINKER_SUFFIX = so CPP_FLAGS = PETSC_SCALAR = real MPI_INCLUDE = -I/nas/lsftmp/g0306332/petsc-2.3.2-p8/include/mpiuni top_builddir = /nas/lsftmp/g0306332/petsc-2.3.2-p8 FC_SUFFIX = o CC_LINKER_SLFLAG = -Wl,-rpath, CPP = /scratch/g0306332/intel/cc/bin/icc -E FC = /lsftmp/g0306332/inter/fc/bin/ifort AR = /usr/bin/ar FC_LINKER_SLFLAG = -Wl,-rpath, CC = /scratch/g0306332/intel/cc/bin/icc AR_LIB_SUFFIX = a LD_SHARED = /scratch/g0306332/intel/cc/bin/icc RANLIB = /usr/bin/ranlib DYNAMICLINKER = /scratch/g0306332/intel/cc/bin/icc DIR = /nas/lsftmp/g0306332/petsc-2.3.2-p8 DATAFILESPATH = TEST_RUNS = C_X11_MPIUni Fortran_MPIUni MPIRUN = ${PETSC_DIR}/bin/mpirun.uni SHELL = /bin/sh SED = /bin/sed GREP = /bin/grep GZIP = /bin/gzip MV = /bin/mv DIFF = /usr/bin/diff -w RM = /bin/rm -f CP = /bin/cp MKDIR = /bin/mkdir -p CVS = cvs OMAKE = /usr/bin/make --no-print-directory MAKE = /usr/bin/make BUILDSHAREDLIB = yes **** bmake/linux-nompi-icc/petscrules **** .F.a: -${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .f.o .f90.o .f95.o: -${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} -o $@ $< .f.a: -${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .F.o .F90.o .F95.o: -${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $< libc: ${LIBNAME}(${OBJSC} ${SOBJSC}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} shared_arch: shared_linux **** bmake/linux-nompi-icc/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef IS_COLORING_MAX #define IS_COLORING_MAX 255 #endif #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef MPIU_COLORING_VALUE #define MPIU_COLORING_VALUE MPI_UNSIGNED_CHAR #endif #ifndef PETSC_RESTRICT #define PETSC_RESTRICT __restrict__ #endif #ifndef PETSC_USE_SOCKET_VIEWER #define PETSC_USE_SOCKET_VIEWER 1 #endif #ifndef PETSC_STATIC_INLINE #define PETSC_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_MPI #define PETSC_HAVE_MPI 1 #endif #ifndef PETSC_DIR_SEPARATOR #define PETSC_DIR_SEPARATOR '/' #endif #ifndef PETSC_HAVE_BLASLAPACK #define PETSC_HAVE_BLASLAPACK 1 #endif #ifndef PETSC_PATH_SEPARATOR #define PETSC_PATH_SEPARATOR ':' #endif #ifndef PETSC_HAVE_FORTRAN #define PETSC_HAVE_FORTRAN 1 #endif #ifndef PETSC_REPLACE_DIR_SEPARATOR #define PETSC_REPLACE_DIR_SEPARATOR '\\' #endif #ifndef PETSC_HAVE_DOUBLE_ALIGN_MALLOC #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #endif #ifndef PETSC_HAVE_SYS_WAIT_H #define PETSC_HAVE_SYS_WAIT_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_SYS_UTSNAME_H #define PETSC_HAVE_SYS_UTSNAME_H 1 #endif #ifndef PETSC_HAVE_NETINET_IN_H #define PETSC_HAVE_NETINET_IN_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_ENDIAN_H #define PETSC_HAVE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_SYS_PROCFS_H #define PETSC_HAVE_SYS_PROCFS_H 1 #endif #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_HAVE_SYS_RESOURCE_H #define PETSC_HAVE_SYS_RESOURCE_H 1 #endif #ifndef PETSC_HAVE_SYS_TIMES_H #define PETSC_HAVE_SYS_TIMES_H 1 #endif #ifndef PETSC_HAVE_NETDB_H #define PETSC_HAVE_NETDB_H 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_PWD_H #define PETSC_HAVE_PWD_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_UNISTD_H #define PETSC_HAVE_UNISTD_H 1 #endif #ifndef PETSC_HAVE_STRINGS_H #define PETSC_HAVE_STRINGS_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SYS_PARAM_H #define PETSC_HAVE_SYS_PARAM_H 1 #endif #ifndef PETSC_HAVE_SYS_SOCKET_H #define PETSC_HAVE_SYS_SOCKET_H 1 #endif #ifndef PETSC_HAVE_SYS_SYSINFO_H #define PETSC_HAVE_SYS_SYSINFO_H 1 #endif #ifndef PETSC_HAVE_LINUX_KERNEL_H #define PETSC_HAVE_LINUX_KERNEL_H 1 #endif #ifndef PETSC_TIME_WITH_SYS_TIME #define PETSC_TIME_WITH_SYS_TIME 1 #endif #ifndef PETSC_HAVE_SYS_TIME_H #define PETSC_HAVE_SYS_TIME_H 1 #endif #ifndef PETSC_HAVE_RTLD_GLOBAL #define PETSC_HAVE_RTLD_GLOBAL 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict__ #endif #ifndef PETSC_HAVE_FORTRAN_UNDERSCORE #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_LIBMKL_LAPACK #define PETSC_HAVE_LIBMKL_LAPACK 1 #endif #ifndef PETSC_HAVE_LIBF77BLAS #define PETSC_HAVE_LIBF77BLAS 1 #endif #ifndef PETSC_HAVE_ERF #define PETSC_HAVE_ERF 1 #endif #ifndef PETSC_HAVE_LIBCBLAS #define PETSC_HAVE_LIBCBLAS 1 #endif #ifndef PETSC_HAVE_LIBMKL_IA32 #define PETSC_HAVE_LIBMKL_IA32 1 #endif #ifndef PETSC_HAVE_LIBATLAS #define PETSC_HAVE_LIBATLAS 1 #endif #ifndef PETSC_ARCH_NAME #define PETSC_ARCH_NAME "linux-nompi-icc" #endif #ifndef PETSC_ARCH #define PETSC_ARCH linux #endif #ifndef PETSC_DIR #define PETSC_DIR /nas/lsftmp/g0306332/petsc-2.3.2-p8 #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_EXTERN_CXX #define PETSC_USE_EXTERN_CXX #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_MISSING_DREAL #define PETSC_MISSING_DREAL 1 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 4 #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 4 #endif #ifndef PETSC_USE_FORTRANKIND #define PETSC_USE_FORTRANKIND 1 #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_HAVE_C99_COMPLEX #define PETSC_HAVE_C99_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE_POPEN #define PETSC_HAVE_POPEN 1 #endif #ifndef PETSC_HAVE_GETRUSAGE #define PETSC_HAVE_GETRUSAGE 1 #endif #ifndef PETSC_HAVE_SIGSET #define PETSC_HAVE_SIGSET 1 #endif #ifndef PETSC_HAVE_GETWD #define PETSC_HAVE_GETWD 1 #endif #ifndef PETSC_HAVE_MEMALIGN #define PETSC_HAVE_MEMALIGN 1 #endif #ifndef PETSC_HAVE_TIMES #define PETSC_HAVE_TIMES 1 #endif #ifndef PETSC_HAVE_GETDOMAINNAME #define PETSC_HAVE_GETDOMAINNAME 1 #endif #ifndef PETSC_HAVE_SNPRINTF #define PETSC_HAVE_SNPRINTF 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE__INTEL_FAST_MEMCPY #define PETSC_HAVE__INTEL_FAST_MEMCPY 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE_GETPWUID #define PETSC_HAVE_GETPWUID 1 #endif #ifndef PETSC_HAVE_IPXFARGC_ #define PETSC_HAVE_IPXFARGC_ 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_HAVE_SYSINFO #define PETSC_HAVE_SYSINFO 1 #endif #ifndef PETSC_HAVE_GETHOSTBYNAME #define PETSC_HAVE_GETHOSTBYNAME 1 #endif #ifndef PETSC_HAVE_SIGACTION #define PETSC_HAVE_SIGACTION 1 #endif #ifndef PETSC_HAVE_READLINK #define PETSC_HAVE_READLINK 1 #endif #ifndef PETSC_HAVE_REALPATH #define PETSC_HAVE_REALPATH 1 #endif #ifndef PETSC_HAVE_SLEEP #define PETSC_HAVE_SLEEP 1 #endif #ifndef PETSC_HAVE_DLERROR #define PETSC_HAVE_DLERROR 1 #endif #ifndef PETSC_HAVE__INTEL_FAST_MEMSET #define PETSC_HAVE__INTEL_FAST_MEMSET 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE_FORK #define PETSC_HAVE_FORK 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE_GETTIMEOFDAY #define PETSC_HAVE_GETTIMEOFDAY 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_UNAME #define PETSC_HAVE_UNAME 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_BZERO #define PETSC_HAVE_BZERO 1 #endif #ifndef PETSC_HAVE_MKSTEMP #define PETSC_HAVE_MKSTEMP 1 #endif #ifndef PETSC_HAVE_GETHOSTNAME #define PETSC_HAVE_GETHOSTNAME 1 #endif #ifndef PETSC_HAVE_DRAND48 #define PETSC_HAVE_DRAND48 1 #endif #ifndef PETSC_HAVE_GETPAGESIZE #define PETSC_HAVE_GETPAGESIZE 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_USE_DEBUG #define PETSC_USE_DEBUG 1 #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE char #endif #ifndef PETSC_USE_32BIT_INT #define PETSC_USE_32BIT_INT 1 #endif #ifndef PETSC_HAVE_PXFGETARG_NEW #define PETSC_HAVE_PXFGETARG_NEW 1 #endif #ifndef PETSC_HAVE_MPIUNI #define PETSC_HAVE_MPIUNI 1 #endif #ifndef PETSC_HAVE_MPI_COMM_C2F #define PETSC_HAVE_MPI_COMM_C2F 1 #endif #ifndef PETSC_HAVE_MPI_COMM_F2C #define PETSC_HAVE_MPI_COMM_F2C 1 #endif #ifndef PETSC_HAVE_MPI_FINT #define PETSC_HAVE_MPI_FINT 1 #endif #ifndef HAVE_GZIP #define HAVE_GZIP 1 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #endif **** bmake/linux-nompi-icc/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #include void *_intel_fast_memcpy(void *,const void *,size_t); #include void *_intel_fast_memset(void *, int, size_t); #endif #endif Python Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- PETSc: Directory creation : Created bmake/linux-nompi-icc for configuration data Build : Set default architecture to linux-nompi-icc in bmake/petscconf File creation : Created bmake/linux-nompi-icc/configure.py for automatic reconfiguration Framework: File creation : Created makefile configure header bmake/linux-nompi-icc/petscconf File creation : Created makefile configure header bmake/linux-nompi-icc/petscconf File creation : Created configure header bmake/linux-nompi-icc/petscconf.h File creation : Created C specific configure header bmake/linux-nompi-icc/petscfix.h