Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ** Cygwin-python-2.4 detected. Threads do not work correctly with this version * ********* Disabling thread usage for this run of config/configure.py ********** ================================================================================ ================================================================================ ================================================================================ Starting Configure Run at Mon Feb 20 22:18:43 2006 Configure Options: --with-mpi-dir=/home/feap/mpich2-install --download-parmetis=1 --download-prometheus=1 --download-spooles=1 --download-hypre=1 --download-f-blas-lapack=ifneeded --useThreads=0 --with-shared=0 --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions Working directory: /home/feap/Library/petsc-2.3.1-p5 Python version: 2.4.1 (#1, May 27 2005, 18:02:40) [GCC 3.3.3 (cygwin special)] ================================================================================ Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureLibrary from PETSc.packages.PVODE(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.PVODE(python/PETSc/packages/PVODE.py:10) Find a PVODE installation and check if it can work with PETSc ================================================================================ TEST configureLibrary from PETSc.packages.NetCDF(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/NetCDF.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(python/PETSc/packages/NetCDF.py:10) Find a NetCDF installation and check if it can work with PETSc ================================================================================ TEST configureBitKeeper from config.sourceControl(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/sourceControl.py:23) TESTING: configureBitKeeper from config.sourceControl(python/BuildSystem/config/sourceControl.py:23) Find the BitKeeper executable Checking for program /home/feap/mpich2-install/bin/bk...not found Checking for program /usr/local/bin/bk...not found Checking for program /usr/bin/bk...not found Checking for program /bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/bk...not found Checking for program /cygdrive/c/WINDOWS/system32/bk...not found Checking for program /cygdrive/c/WINDOWS/bk...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/bk...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/bk...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/bk...not found Checking for program /cygdrive/c/backup/4print/bk...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/bk...not found Checking for program ./bk...not found Checking for program /bin/bk...not found Checking for program /home/feap/bk...not found ================================================================================ TEST configureCVS from config.sourceControl(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/sourceControl.py:30) TESTING: configureCVS from config.sourceControl(python/BuildSystem/config/sourceControl.py:30) Find the CVS executable Checking for program /home/feap/mpich2-install/bin/cvs...not found Checking for program /usr/local/bin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /bin/cvs...not found Checking for program /usr/X11R6/bin/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/cvs...not found Checking for program /cygdrive/c/WINDOWS/system32/cvs...not found Checking for program /cygdrive/c/WINDOWS/cvs...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/cvs...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/cvs...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/cvs...not found Checking for program /cygdrive/c/backup/4print/cvs...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/cvs...not found Checking for program ./cvs...not found Checking for program /bin/cvs...not found Checking for program /home/feap/cvs...not found ================================================================================ TEST configureSubversion from config.sourceControl(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/sourceControl.py:35) TESTING: configureSubversion from config.sourceControl(python/BuildSystem/config/sourceControl.py:35) Find the Subversion executable Checking for program /home/feap/mpich2-install/bin/svn...not found Checking for program /usr/local/bin/svn...not found Checking for program /usr/bin/svn...found Defined make macro "SVN" to "svn" ================================================================================ TEST configureMkdir from PETSc.utilities.programs(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/programs.py:21) TESTING: configureMkdir from PETSc.utilities.programs(python/PETSc/utilities/programs.py:21) Make sure we can have mkdir automatically make intermediate directories Checking for program /home/feap/mpich2-install/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found sh: /usr/bin/mkdir -p .conftest/tmp Executing: /usr/bin/mkdir -p .conftest/tmp sh: Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configurePrograms from PETSc.utilities.programs(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/programs.py:39) TESTING: configurePrograms from PETSc.utilities.programs(python/PETSc/utilities/programs.py:39) Check for the programs needed to build and run PETSc Checking for program /home/feap/mpich2-install/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /home/feap/mpich2-install/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Checking for program /home/feap/mpich2-install/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /home/feap/mpich2-install/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /home/feap/mpich2-install/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /home/feap/mpich2-install/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /home/feap/mpich2-install/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found sh: /usr/bin/diff -w diff1 diff2 Executing: /usr/bin/diff -w diff1 diff2 sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/feap/ps...not found Checking for program /home/feap/mpich2-install/bin/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" ================================================================================ TEST configureMake from PETSc.utilities.Make(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/Make.py:21) TESTING: configureMake from PETSc.utilities.Make(python/PETSc/utilities/Make.py:21) Check various things about make Checking for program /home/feap/mpich2-install/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" sh: strings /usr/bin/make Executing: strings /usr/bin/make sh: Make check failed: Could not execute 'strings /usr/bin/make': strings: /usr/bin/make: No such file or directory sh: strings /usr/bin/make.exe Executing: strings /usr/bin/make.exe sh: attempt to use unsupported feature: `%s' touch: Archive `%s' does not exist touch: touch: `%s' is not a valid archive touch: Member `%s' does not exist in `%s' touch: Bad return code from ar_member_touch on `%s' [^_] [^_] ! ARFILENAMES/ WVS1 [^_] .SUFFIXES [^_] $(MAKE) ${MAKE} [^_] +t&C @u,A kill *** [%s] Archive member `%s' may be bogus; not deleted *** Archive member `%s' may be bogus; not deleted *** [%s] Deleting file `%s' unlink: *** Deleting file `%s' $P)@ # commands to execute (built-in): %.*s (from `%s', line %lu): $-,@ $:,@ $A,@ $(AR) $(ARFLAGS) $@ $< %.out @rm -f $@ cp ... ... xecvp exit fclose fcntl fdopen fflush fgets fopen fprintf fputs fread free fstat fwrite getcwd getenv getlogin getpid getpwnam kill localtime lseek lstat malloc memcpy memmove memset mkstemp open opendir pipe printf putc puts qsort read readdir realloc remove setlocale setvbuf sigaction sigaddset sigemptyset signal sigprocmask sprintf sscanf stat strcasecmp strcat strchr strcmp strcpy strdup strerror strlen strncasecmp strncmp strrchr strsignal strtoul time unlink vfork vfprintf wait waitpid write libintl_bindtextdomain libintl_gettext libintl_textdomain KERNEL32.dll cygwin1.dll cygintl-2.dll Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC} ${SOBJSC})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(python/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /home/feap/mpich2-install/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...not found Checking for program /bin/gdb...not found Checking for program /usr/X11R6/bin/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/gdb...not found Checking for program /cygdrive/c/WINDOWS/system32/gdb...not found Checking for program /cygdrive/c/WINDOWS/gdb...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/gdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/gdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/gdb...not found Checking for program /cygdrive/c/backup/4print/gdb...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/gdb...not found Checking for program ./gdb...not found Checking for program /bin/gdb...not found Checking for program /home/feap/gdb...not found Checking for program /home/feap/mpich2-install/bin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/dbx...not found Checking for program /cygdrive/c/WINDOWS/system32/dbx...not found Checking for program /cygdrive/c/WINDOWS/dbx...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/dbx...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/dbx...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/dbx...not found Checking for program /cygdrive/c/backup/4print/dbx...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/dbx...not found Checking for program ./dbx...not found Checking for program /bin/dbx...not found Checking for program /home/feap/dbx...not found Checking for program /home/feap/mpich2-install/bin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/xdb...not found Checking for program /cygdrive/c/WINDOWS/system32/xdb...not found Checking for program /cygdrive/c/WINDOWS/xdb...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/xdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/xdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/xdb...not found Checking for program /cygdrive/c/backup/4print/xdb...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/xdb...not found Checking for program ./xdb...not found Checking for program /bin/xdb...not found Checking for program /home/feap/xdb...not found ================================================================================ TEST configureScalarType from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:32) TESTING: configureScalarType from PETSc.utilities.languages(python/PETSc/utilities/languages.py:32) Choose between real and complex numbers Scalar type is real ================================================================================ TEST configurePrecision from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:42) TESTING: configurePrecision from PETSc.utilities.languages(python/PETSc/utilities/languages.py:42) Set the default real number precision for PETSc objects Precision is double ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:65) TESTING: configureCLanguage from PETSc.utilities.languages(python/PETSc/utilities/languages.py:65) Choose between C and C++ bindings Allowing C++ name mangling C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureExternC from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:87) TESTING: configureExternC from PETSc.utilities.languages(python/PETSc/utilities/languages.py:87) Protect C bindings from C++ mangling Defined "USE_EXTERN_CXX" to " " ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:93) TESTING: configureFortranLanguage from PETSc.utilities.languages(python/PETSc/utilities/languages.py:93) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/petscdir.py:35) TESTING: configureDirectories from PETSc.utilities.petscdir(python/PETSc/utilities/petscdir.py:35) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 2 #define PETSC_VERSION_MINOR 3 #define PETSC_VERSION_SUBMINOR 1 #define PETSC_VERSION_PATCH 5 #define PETSC_VERSION_DATE "February, 3, 2006" #define PETSC_VERSION_PATCH_DATE "Sat Feb 11 20:02:43 CST 2006" #define PETSC_VERSION_BK "balay@asterix.mcs.anl.gov|ChangeSet|20060212020213|15075" Defined make macro "DIR" to "/home/feap/Library/petsc-2.3.1-p5" Defined "DIR" to "/home/feap/Library/petsc-2.3.1-p5" sh: /bin/sh /home/feap/Library/petsc-2.3.1-p5/bin/config/config.guess Executing: /bin/sh /home/feap/Library/petsc-2.3.1-p5/bin/config/config.guess sh: i686-pc-cygwin sh: /bin/sh /home/feap/Library/petsc-2.3.1-p5/bin/config/config.sub i686-pc-cygwin Executing: /bin/sh /home/feap/Library/petsc-2.3.1-p5/bin/config/config.sub i686-pc-cygwin sh: i686-pc-cygwin ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/petscdir.py:113) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(python/PETSc/utilities/petscdir.py:113) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/petscdir.py:120) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(python/PETSc/utilities/petscdir.py:120) This is a tarball installation ================================================================================ TEST configureETags from PETSc.utilities.Etags(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(python/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(python/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST checkVendor from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:208) TESTING: checkVendor from config.setCompilers(python/BuildSystem/config/setCompilers.py:208) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:218) TESTING: checkInitialFlags from config.setCompilers(python/BuildSystem/config/setCompilers.py:218) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized executableFlags to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:321) TESTING: checkCCompiler from config.setCompilers(python/BuildSystem/config/setCompilers.py:321) Locate a functional C compiler Checking for program /home/feap/mpich2-install/bin/mpicc...found Defined make macro "CC" to "/home/feap/mpich2-install/bin/mpicc" Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:370) TESTING: checkCPreprocessor from config.setCompilers(python/BuildSystem/config/setCompilers.py:370) Locate a functional C preprocessor Checking for program /home/feap/mpich2-install/bin/mpicc...found Defined make macro "CPP" to "/home/feap/mpich2-install/bin/mpicc -E" Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 183 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 4 "conftest.c" 2 Popping language C ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:468) TESTING: checkCxxCompiler from config.setCompilers(python/BuildSystem/config/setCompilers.py:468) Locate a functional Cxx compiler Checking for program /home/feap/mpich2-install/bin/mpicxx...found Defined make macro "CXX" to "/home/feap/mpich2-install/bin/mpicxx" Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe conftest.o sh: sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:520) TESTING: checkCxxPreprocessor from config.setCompilers(python/BuildSystem/config/setCompilers.py:520) Locate a functional Cxx preprocessor Checking for program /home/feap/mpich2-install/bin/mpicxx...found Defined make macro "CXXCPP" to "/home/feap/mpich2-install/bin/mpicxx -E" Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -E conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -E conftest.cc sh: # 1 "conftest.cc" # 1 "" # 1 "" # 1 "conftest.cc" # 1 "confdefs.h" 1 # 2 "conftest.cc" 2 # 1 "conffix.h" 1 extern "C" { } # 3 "conftest.cc" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/cstdlib" 1 3 # 47 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/cstdlib" 3 # 48 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/cstdlib" 3 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/i686-pc-cygwin/bits/c++config.h" 1 3 # 35 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/i686-pc-cygwin/bits/c++config.h" 3 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/i686-pc-cy... ... ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; inline long abs(long __i) { return labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } } # 4 "conftest.cc" 2 Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:623) TESTING: checkFortranCompiler from config.setCompilers(python/BuildSystem/config/setCompilers.py:623) Locate a functional Fortran compiler Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif77...found Defined make macro "FC" to "/home/feap/mpich2-install/bin/mpif77" Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe conftest.o sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:658) TESTING: checkFortranComments from config.setCompilers(python/BuildSystem/config/setCompilers.py:658) Make sure fortran comment "!" works Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkBrokenMpif90 from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:667) TESTING: checkBrokenMpif90 from config.setCompilers(python/BuildSystem/config/setCompilers.py:667) mpif90 from mpich1 and older c-preprocessor combinations misbehave Pushing language FC Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:707) TESTING: checkPIC from config.setCompilers(python/BuildSystem/config/setCompilers.py:707) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Trying C compiler flag -PIC sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -PIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -PIC conftest.o sh: Possible ERROR while running linker: gcc: unrecognized option `-PIC' output: error message = {gcc: unrecognized option `-PIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -PIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting C linker flag -PIC due to gcc: unrecognized option `-PIC' Rejected C compiler flag -PIC because linker cannot handle it Trying C compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -fPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -fPIC conftest.o sh: Valid C linker flag -fPIC Adding C compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:1: warning: -fPIC ignored for target (all code is position independent) } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -fPIC due to conftest.c:1: warning: -fPIC ignored for target (all code is position independent) Rejected C compiler flag -fPIC Trying C compiler flag -KPIC sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -KPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -KPIC conftest.o sh: Possible ERROR while running linker: gcc: unrecognized option `-KPIC' output: error message = {gcc: unrecognized option `-KPIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -KPIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting C linker flag -KPIC due to gcc: unrecognized option `-KPIC' Rejected C compiler flag -KPIC because linker cannot handle it Popping language C Pushing language Cxx Trying Cxx compiler flag -PIC sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -PIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -PIC conftest.o sh: Possible ERROR while running linker: c++: unrecognized option `-PIC' output: error message = {c++: unrecognized option `-PIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -PIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting Cxx linker flag -PIC due to c++: unrecognized option `-PIC' Rejected Cxx compiler flag -PIC because linker cannot handle it Trying Cxx compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -fPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -fPIC conftest.o sh: Valid Cxx linker flag -fPIC Adding Cxx compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -fPIC conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -fPIC conftest.cc sh: Possible ERROR while running compiler: error message = {conftest.cc:1: warning: -fPIC ignored for target (all code is position independent) } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -fPIC due to conftest.cc:1: warning: -fPIC ignored for target (all code is position independent) Rejected Cxx compiler flag -fPIC Trying Cxx compiler flag -KPIC sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -KPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -KPIC conftest.o sh: Possible ERROR while running linker: c++: unrecognized option `-KPIC' output: error message = {c++: unrecognized option `-KPIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -KPIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting Cxx linker flag -KPIC due to c++: unrecognized option `-KPIC' Rejected Cxx compiler flag -KPIC because linker cannot handle it Popping language Cxx Pushing language FC Trying FC compiler flag -PIC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -PIC conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -PIC conftest.o sh: Possible ERROR while running linker: g77: unrecognized option `-PIC' output: error message = {g77: unrecognized option `-PIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -PIC conftest.o Source: program main end Rejecting FC linker flag -PIC due to g77: unrecognized option `-PIC' Rejected FC compiler flag -PIC because linker cannot handle it Trying FC compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -fPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -fPIC conftest.o sh: Valid FC linker flag -fPIC Adding FC compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -fPIC conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -fPIC conftest.F sh: Possible ERROR while running compiler: error message = {conftest.F:0: warning: -fPIC ignored for target (all code is position independent) /cygdrive/c/WINDOWS/TEMP/cc8FqxJG.f:0: warning: -fPIC ignored for target (all code is position independent) } Source: program main end Rejecting compiler flag -fPIC due to conftest.F:0: warning: -fPIC ignored for target (all code is position independent) /cygdrive/c/WINDOWS/TEMP/cc8FqxJG.f:0: warning: -fPIC ignored for target (all code is position independent) Rejected FC compiler flag -fPIC Trying FC compiler flag -KPIC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -KPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -KPIC conftest.o sh: Possible ERROR while running linker: g77: unrecognized option `-KPIC' output: error message = {g77: unrecognized option `-KPIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -KPIC conftest.o Source: program main end Rejecting FC linker flag -KPIC due to g77: unrecognized option `-KPIC' Rejected FC compiler flag -KPIC because linker cannot handle it Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:747) TESTING: checkLargeFileIO from config.setCompilers(python/BuildSystem/config/setCompilers.py:747) ================================================================================ TEST checkArchiver from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:837) TESTING: checkArchiver from config.setCompilers(python/BuildSystem/config/setCompilers.py:837) Check that the archiver exists and can make a library usable by the compiler Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Checking for program /home/feap/mpich2-install/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /home/feap/mpich2-install/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib -c libconf1.a Executing: /usr/bin/ranlib -c libconf1.a sh: Possible ERROR while running ranlib: error message = {/usr/bin/ranlib: '-c': No such file } Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Checking for program /home/feap/mpich2-install/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /home/feap/mpich2-install/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib libconf1.a Executing: /usr/bin/ranlib libconf1.a sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconf1 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconf1 sh: Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:940) TESTING: checkSharedLinker from config.setCompilers(python/BuildSystem/config/setCompilers.py:940) Check that the linker can produce shared libraries Checking shared linker /home/feap/mpich2-install/bin/mpicc using flags ['-shared'] Checking for program /home/feap/mpich2-install/bin/mpicc...found Defined make macro "LD_SHARED" to "/home/feap/mpich2-install/bin/mpicc" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -shared conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -shared conftest.o sh: Valid C linker flag -shared sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o libconftest.so -shared conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o libconftest.so -shared conftest.o sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lconftest collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lconftest collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Checking shared linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "LD_SHARED" to "/usr/bin/ar" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a Executing: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest sh: Using shared linker /usr/bin/ar with flags [] and library extension a sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:1011) TESTING: checkSharedLinkerPaths from config.setCompilers(python/BuildSystem/config/setCompilers.py:1011) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -flags Executing: /home/feap/mpich2-install/bin/mpicc -flags sh: Trying C linker flag -Wl,-rpath, sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o sh: Valid C linker flag -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 Popping language C Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicc -flags Executing: /home/feap/mpich2-install/bin/mpicc -flags sh: Trying Cxx linker flag -Wl,-rpath, sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o sh: Valid Cxx linker flag -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 Popping language Cxx Pushing language FC sh: /home/feap/mpich2-install/bin/mpicc -flags Executing: /home/feap/mpich2-install/bin/mpicc -flags sh: Trying FC linker flag -Wl,-rpath, sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o sh: Valid FC linker flag -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 Popping language FC ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:1083) TESTING: checkDynamicLinker from config.setCompilers(python/BuildSystem/config/setCompilers.py:1083) Check that the linker can produce dynamic libraries Checking for header: dlfcn.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 19 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *, int); extern void *dlsym (void *, const char *); extern int dlclose (void *); extern char *dlerror (void); extern void dlfork (int); # 4 "conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for functions ['dlopen', 'dlsym', 'dlclose'] in library ['dl'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -ldl Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -ldl sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -ldl collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -ldl collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); int main() { dlopen() ; return 0; } Popping language C Checking for functions ['dlopen', 'dlsym', 'dlclose'] in library [''] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Popping language C sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 Checking dynamic linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "DYNAMICLINKER" to "/usr/bin/ar" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /usr/bin/ar -o libconftest.so conftest.o Executing: /usr/bin/ar -o libconftest.so conftest.o sh: Possible ERROR while running linker: /usr/bin/ar: no operation specified output: ret = 256 error message = {/usr/bin/ar: no operation specified } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Source: #include "confdefs.h" #include "conffix.h" int foo(void) {return 0;} Checking dynamic linker /home/feap/mpich2-install/bin/mpicc using flags ['-shared'] Checking for program /home/feap/mpich2-install/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/home/feap/mpich2-install/bin/mpicc" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -shared conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -shared conftest.o sh: Valid C linker flag -shared sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o libconftest.so -shared conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o libconftest.so -shared conftest.o sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Using dynamic linker /home/feap/mpich2-install/bin/mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:1129) TESTING: output from config.setCompilers(python/BuildSystem/config/setCompilers.py:1129) Output module data as defines and substitutions Substituting "CC" with "/home/feap/mpich2-install/bin/mpicc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/home/feap/mpich2-install/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/home/feap/mpich2-install/bin/mpicxx" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "/home/feap/mpich2-install/bin/mpicxx -E" Substituting "FC" with "/home/feap/mpich2-install/bin/mpif77" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "" Substituting "SHARED_LIBRARY_FLAG" with "" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilerFlags.py:66) TESTING: configureCompilerFlags from config.compilerFlags(python/BuildSystem/config/compilerFlags.py:66) Get the default compiler flags Pushing language C sh: /home/feap/mpich2-install/bin/mpicc --version Executing: /home/feap/mpich2-install/bin/mpicc --version sh: gcc (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) Copyright (C) 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /home/feap/mpich2-install/bin/mpicc gcc (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) sh: /home/feap/mpich2-install/bin/mpicc -show Executing: /home/feap/mpich2-install/bin/mpicc -show sh: gcc -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -Wall sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall conftest.c sh: Added C compiler flag -Wall Trying C compiler flag -Wshadow sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow conftest.c sh: Added C compiler flag -Wshadow Trying C compiler flag -Wwrite-strings sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings conftest.c sh: Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-long-double sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -Wno-long-double conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -Wno-long-double conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {cc1: error: unrecognized command line option "-Wno-long-double" } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -Wno-long-double due to nonzero status from link Rejecting compiler flag -Wno-long-double due to cc1: error: unrecognized command line option "-Wno-long-double" PETSc Error: No output file produced Rejected C compiler flag -Wno-long-double Trying C compiler flag -fomit-frame-pointer sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer conftest.c sh: Added C compiler flag -fomit-frame-pointer Trying C compiler flag -Wno-strict-aliasing sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing conftest.c sh: Added C compiler flag -Wno-strict-aliasing sh: /home/feap/mpich2-install/bin/mpicc -show Executing: /home/feap/mpich2-install/bin/mpicc -show sh: gcc -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -g3 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Added C compiler flag -g3 Popping language C Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx --version Executing: /home/feap/mpich2-install/bin/mpicxx --version sh: c++ (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) Copyright (C) 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /home/feap/mpich2-install/bin/mpicxx c++ (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) sh: /home/feap/mpich2-install/bin/mpicxx -show Executing: /home/feap/mpich2-install/bin/mpicxx -show sh: c++ -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lmpichcxx -lpmpich -lmpich sh: c++ --help Executing: c++ --help sh: Usage: c++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by c++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -Wall sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall conftest.cc sh: Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wshadow sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow conftest.cc sh: Added Cxx compiler flag -Wshadow Trying Cxx compiler flag -Wwrite-strings sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings conftest.cc sh: Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-long-double sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -Wno-long-double conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -Wno-long-double conftest.cc sh: Possible ERROR while running compiler: ret = 256 error message = {cc1plus: error: unrecognized command line option "-Wno-long-double" } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -Wno-long-double due to nonzero status from link Rejecting compiler flag -Wno-long-double due to cc1plus: error: unrecognized command line option "-Wno-long-double" PETSc Error: No output file produced Rejected Cxx compiler flag -Wno-long-double Trying Cxx compiler flag -fomit-frame-pointer sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer conftest.cc sh: Added Cxx compiler flag -fomit-frame-pointer Trying Cxx compiler flag -Wno-strict-aliasing sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing conftest.cc sh: Added Cxx compiler flag -Wno-strict-aliasing sh: /home/feap/mpich2-install/bin/mpicxx -show Executing: /home/feap/mpich2-install/bin/mpicxx -show sh: c++ -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lmpichcxx -lpmpich -lmpich sh: c++ --help Executing: c++ --help sh: Usage: c++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by c++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -g3 sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Added Cxx compiler flag -g3 Popping language Cxx Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 --version Executing: /home/feap/mpich2-install/bin/mpif77 --version sh: GNU Fortran (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) Copyright (C) 2004 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING or type the command `info -f g77 Copying'. getCompilerVersion: /home/feap/mpich2-install/bin/mpif77 GNU Fortran (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) sh: /home/feap/mpich2-install/bin/mpif77 -show Executing: /home/feap/mpich2-install/bin/mpif77 -show sh: g77 -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich sh: g77 --help Executing: g77 --help sh: Usage: g77 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g77. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -Wall sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall conftest.F sh: Added FC compiler flag -Wall sh: /home/feap/mpich2-install/bin/mpif77 -show Executing: /home/feap/mpich2-install/bin/mpif77 -show sh: g77 -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich sh: g77 --help Executing: g77 --help sh: Usage: g77 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g77. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -g sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Added FC compiler flag -g Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(python/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/arch.py:39) TESTING: configureArchitecture from PETSc.utilities.arch(python/PETSc/utilities/arch.py:39) Checks PETSC_ARCH and sets if not set Defined "ARCH" to "cygwin" Defined "ARCH_NAME" to ""cygwin-c-real-opt"" Substituting "ARCH" with "cygwin-c-real-opt" ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/sharedLibraries.py:41) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(python/PETSc/utilities/sharedLibraries.py:41) Defined make rule "shared_arch" with dependencies "" and code [] Defined make macro "BUILDSHAREDLIB" to "no" ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/sharedLibraries.py:53) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(python/PETSc/utilities/sharedLibraries.py:53) Checks whether dynamic libraries should be used, for which you must - Specify --with-dynamic - Have found a working dynamic linker (with dlfcn.h and libdl) Defines PETSC_USE_DYNAMIC_LIBRARIES if they are used Dynamic libraries - disabled ================================================================================ TEST configureBmakeDir from PETSc.utilities.bmakeDir(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/bmakeDir.py:26) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(python/PETSc/utilities/bmakeDir.py:26) Makes bmake/$PETSC_ARCH if it does not exist Changed persistence directory to bmake/cygwin-c-real-opt sh: /home/feap/mpich2-install/bin/mpicc --help Executing: /home/feap/mpich2-install/bin/mpicc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:126) TESTING: checkRestrict from config.compilers(python/BuildSystem/config/compilers.py:126) Check for the C/CXX restrict keyword Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:5: error: syntax error before "x" } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:5: warning: unused variable `x' } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:244) TESTING: checkCFormatting from config.compilers(python/BuildSystem/config/compilers.py:244) Activate format string checking if using the GNU compilers compilers: Added gcc printf format checking Defined "PRINTF_FORMAT_CHECK(A,B)" to "__attribute__((format (printf, A, B)))" ================================================================================ TEST checkCStaticInline from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:97) TESTING: checkCStaticInline from config.compilers(python/BuildSystem/config/compilers.py:97) Check for C keyword: static inline Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `i' } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:254) TESTING: checkDynamicLoadFlag from config.compilers(python/BuildSystem/config/compilers.py:254) Checks that dlopen() takes RTLD_GLOBAL, and defines PETSC_HAVE_RTLD_GLOBAL if it does sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:153) TESTING: checkCLibraries from config.compilers(python/BuildSystem/config/compilers.py:153) Determines the libraries needed to link with C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: mpicc for 1.0.3 Possible ERROR while running linker: Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lpmpich -lmpich -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc output: mpicc for 1.0.3 error message = {Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lpmpich -lmpich -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Checking arg mpicc compilers: Unknown arg mpicc compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.0.3 compilers: Unknown arg 1.0.3 compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Unknown arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Checking arg --verbose compilers: Unknown arg --verbose compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --exec-prefix=/usr compilers: Unknown arg --exec-prefix=/usr compilers: Checking arg --sysconfdir=/etc compilers: Unknown arg --sysconfdir=/etc compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Unknown arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-version-specific-runtime-libs compilers: Unknown arg --enable-version-specific-runtime-libs compilers: Checking arg --without-x compilers: Unknown arg --without-x compilers: Checking arg --enable-libgcj compilers: Unknown arg --enable-libgcj compilers: Checking arg --disable-java-awt compilers: Unknown arg --disable-java-awt compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-interpreter compilers: Unknown arg --enable-interpreter compilers: Checking arg --disable-libgcj-debug compilers: Unknown arg --disable-libgcj-debug compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --enable-java-gc=boehm compilers: Unknown arg --enable-java-gc=boehm compilers: Checking arg --disable-win32-registry compilers: Unknown arg --disable-win32-registry compilers: Checking arg --enable-sjlj-exceptions compilers: Unknown arg --enable-sjlj-exceptions compilers: Checking arg --enable-hash-synchronization compilers: Unknown arg --enable-hash-synchronization compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg (reconfigured) compilers: Unknown arg (reconfigured) compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.4.4 compilers: Unknown arg 3.4.4 compilers: Checking arg (cygming compilers: Unknown arg (cygming compilers: Checking arg special) compilers: Unknown arg special) compilers: Checking arg (gdc compilers: Unknown arg (gdc compilers: Checking arg 0.12, compilers: Unknown arg 0.12, compilers: Checking arg using compilers: Unknown arg using compilers: Checking arg dmd compilers: Unknown arg dmd compilers: Checking arg 0.125) compilers: Unknown arg 0.125) compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg --dll-search-prefix=cyg compilers: Unknown arg --dll-search-prefix=cyg compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest.exe compilers: Unknown arg conftest.exe compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Checking arg -L/home/feap/mpich2-install/lib compilers: Found library or library directory: -L/home/feap/mpich2-install/lib compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -lpmpich compilers: Found library or library directory: -lpmpich compilers: Checking arg -lmpich compilers: Found library or library directory: -lmpich compilers: Checking arg -lgcc compilers: Checking arg -lcygwin compilers: Found library or library directory: -lcygwin compilers: Checking arg -luser32 compilers: Found library or library directory: -luser32 compilers: Checking arg -lkernel32 compilers: Checking arg -ladvapi32 compilers: Found library or library directory: -ladvapi32 compilers: Checking arg -lshell32 compilers: Found library or library directory: -lshell32 compilers: Checking arg -lgcc compilers: Libraries needed to link C code with another linker: ['-L/home/feap/mpich2-install/lib', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lpmpich', '-lmpich', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] compilers: Check that C libraries can be used from Fortran Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lpmpich -lmpich -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lpmpich -lmpich -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../libcygwin.a(libcmain.o):: undefined reference to `_WinMain@16' collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../libcygwin.a(libcmain.o):: undefined reference to `_WinMain@16' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lpmpich -lmpich -lcygwin -luser32 -ladvapi32 -lshell32 Source: program main end Popping language FC compilers: C libraries cannot directly be used from Fortran compilers: Error message from compiling {Cannot compile/link FC with /home/feap/mpich2-install/bin/mpicc.} sh: /home/feap/mpich2-install/bin/mpicxx --help Executing: /home/feap/mpich2-install/bin/mpicxx --help sh: Usage: c++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by c++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:126) TESTING: checkRestrict from config.compilers(python/BuildSystem/config/compilers.py:126) Check for the C/CXX restrict keyword Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.cc: In function `int main()': conftest.cc:5: error: expected primary-expression before "float" conftest.cc:5: error: expected `;' before "float" } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Possible ERROR while running compiler: error message = {conftest.cc: In function `int main()': conftest.cc:5: warning: unused variable 'x' } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:286) TESTING: checkCxxNamespace from config.compilers(python/BuildSystem/config/compilers.py:286) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:261) TESTING: checkCxxOptionalExtensions from config.compilers(python/BuildSystem/config/compilers.py:261) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:111) TESTING: checkCxxStaticInline from config.compilers(python/BuildSystem/config/compilers.py:111) Check for C++ keyword: static inline Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Possible ERROR while running compiler: error message = {conftest.cc: In function `int main()': conftest.cc:6: warning: unused variable 'i' } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:301) TESTING: checkCxxLibraries from config.compilers(python/BuildSystem/config/compilers.py:301) Determines the libraries needed to link with C++ Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: mpicxx for 1.0.3 Possible ERROR while running linker: Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lmpichcxx -lpmpich -lmpich -lstdc++ -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc output: mpicxx for 1.0.3 error message = {Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lmpichcxx -lpmpich -lmpich -lstdc++ -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx compilers: Checking arg mpicxx compilers: Unknown arg mpicxx compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.0.3 compilers: Unknown arg 1.0.3 compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Unknown arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Checking arg --verbose compilers: Unknown arg --verbose compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --exec-prefix=/usr compilers: Unknown arg --exec-prefix=/usr compilers: Checking arg --sysconfdir=/etc compilers: Unknown arg --sysconfdir=/etc compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Unknown arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-version-specific-runtime-libs compilers: Unknown arg --enable-version-specific-runtime-libs compilers: Checking arg --without-x compilers: Unknown arg --without-x compilers: Checking arg --enable-libgcj compilers: Unknown arg --enable-libgcj compilers: Checking arg --disable-java-awt compilers: Unknown arg --disable-java-awt compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-interpreter compilers: Unknown arg --enable-interpreter compilers: Checking arg --disable-libgcj-debug compilers: Unknown arg --disable-libgcj-debug compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --enable-java-gc=boehm compilers: Unknown arg --enable-java-gc=boehm compilers: Checking arg --disable-win32-registry compilers: Unknown arg --disable-win32-registry compilers: Checking arg --enable-sjlj-exceptions compilers: Unknown arg --enable-sjlj-exceptions compilers: Checking arg --enable-hash-synchronization compilers: Unknown arg --enable-hash-synchronization compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg (reconfigured) compilers: Unknown arg (reconfigured) compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.4.4 compilers: Unknown arg 3.4.4 compilers: Checking arg (cygming compilers: Unknown arg (cygming compilers: Checking arg special) compilers: Unknown arg special) compilers: Checking arg (gdc compilers: Unknown arg (gdc compilers: Checking arg 0.12, compilers: Unknown arg 0.12, compilers: Checking arg using compilers: Unknown arg using compilers: Checking arg dmd compilers: Unknown arg dmd compilers: Checking arg 0.125) compilers: Unknown arg 0.125) compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg --dll-search-prefix=cyg compilers: Unknown arg --dll-search-prefix=cyg compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest.exe compilers: Unknown arg conftest.exe compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Checking arg -L/home/feap/mpich2-install/lib compilers: Found library or library directory: -L/home/feap/mpich2-install/lib Library already in C list so skipping in C++ compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 Library already in C list so skipping in C++ compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. Library already in C list so skipping in C++ compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -lmpichcxx compilers: Found library or library directory: -lmpichcxx compilers: Checking arg -lpmpich compilers: Found library or library directory: -lpmpich Library already in C list so skipping in C++ compilers: Checking arg -lmpich compilers: Found library or library directory: -lmpich Library already in C list so skipping in C++ compilers: Checking arg -lstdc++ compilers: Found library or library directory: -lstdc++ compilers: Checking arg -lgcc compilers: Checking arg -lcygwin compilers: Found library or library directory: -lcygwin Library already in C list so skipping in C++ compilers: Checking arg -luser32 compilers: Found library or library directory: -luser32 Library already in C list so skipping in C++ compilers: Checking arg -lkernel32 compilers: Checking arg -ladvapi32 compilers: Found library or library directory: -ladvapi32 Library already in C list so skipping in C++ compilers: Checking arg -lshell32 compilers: Found library or library directory: -lshell32 Library already in C list so skipping in C++ compilers: Checking arg -lgcc compilers: Libraries needed to link Cxx code with another linker: ['-lmpichcxx', '-lstdc++'] compilers: Check that Cxx libraries can be used from C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lmpichcxx -lstdc++ Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lmpichcxx -lstdc++ sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lmpichcxx -lstdc++ Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lmpichcxx -lstdc++ sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o -lmpichcxx -lstdc++ Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o -lmpichcxx -lstdc++ sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o -lmpichcxx -lstdc++ Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o -lmpichcxx -lstdc++ sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language FC ================================================================================ TEST checkFortranTypeSizes from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:405) TESTING: checkFortranTypeSizes from config.compilers(python/BuildSystem/config/compilers.py:405) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Possible ERROR while running compiler: error message = {conftest.F: In program `main': In file included from conftest.F:0: conftest.F:2: warning: unused variable 'variable' } Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:464) TESTING: checkFortranNameMangling from config.compilers(python/BuildSystem/config/compilers.py:464) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Popping language C Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o confc.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o confc.o sh: Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:497) TESTING: checkFortranNameManglingDouble from config.compilers(python/BuildSystem/config/compilers.py:497) Checks if symbols containing and underscore append and extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Popping language C Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o confc.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o confc.o sh: Popping language FC compilers: Fortran appends and extra underscore to names containing underscores Defined "HAVE_FORTRAN_UNDERSCORE_UNDERSCORE" to "1" ================================================================================ TEST checkFortranPreprocessor from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:507) TESTING: checkFortranPreprocessor from config.compilers(python/BuildSystem/config/compilers.py:507) Determine if Fortran handles preprocessing properly Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -DPTesting conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -DPTesting conftest.F sh: Added FC compiler flag Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranLibraries from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:529) TESTING: checkFortranLibraries from config.compilers(python/BuildSystem/config/compilers.py:529) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -V Executing: /home/feap/mpich2-install/bin/mpif77 -V sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -v -Wall -g conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -v -Wall -g conftest.o sh: mpif77 for 1.0.3 Possible ERROR while running linker: Driving: g77 -o conftest.exe -v -Wall -g conftest.o -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lpmpich -lmpich -lfrtbegin -lg2c -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc output: mpif77 for 1.0.3 error message = {Driving: g77 -o conftest.exe -v -Wall -g conftest.o -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lpmpich -lmpich -lfrtbegin -lg2c -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -v -Wall -g conftest.o Source: program main end Popping language FC compilers: Checking arg mpif77 compilers: Unknown arg mpif77 compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.0.3 compilers: Unknown arg 1.0.3 compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg g77 compilers: Unknown arg g77 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest.exe compilers: Unknown arg conftest.exe compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -I/home/feap/mpich2-install/include compilers: Found include directory: /home/feap/mpich2-install/include compilers: Checking arg -L/home/feap/mpich2-install/lib compilers: Found library or library directory: -L/home/feap/mpich2-install/lib compilers: Checking arg -lpmpich compilers: Found library or library directory: -lpmpich compilers: Checking arg -lmpich compilers: Found library or library directory: -lmpich compilers: Checking arg -lfrtbegin sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 compilers: Found library or library directory: -lfrtbegin compilers: Checking arg -lg2c compilers: Found library or library directory: -lg2c compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Unknown arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Checking arg --verbose compilers: Unknown arg --verbose compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --exec-prefix=/usr compilers: Unknown arg --exec-prefix=/usr compilers: Checking arg --sysconfdir=/etc compilers: Unknown arg --sysconfdir=/etc compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Unknown arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-version-specific-runtime-libs compilers: Unknown arg --enable-version-specific-runtime-libs compilers: Checking arg --without-x compilers: Unknown arg --without-x compilers: Checking arg --enable-libgcj compilers: Unknown arg --enable-libgcj compilers: Checking arg --disable-java-awt compilers: Unknown arg --disable-java-awt compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-interpreter compilers: Unknown arg --enable-interpreter compilers: Checking arg --disable-libgcj-debug compilers: Unknown arg --disable-libgcj-debug compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --enable-java-gc=boehm compilers: Unknown arg --enable-java-gc=boehm compilers: Checking arg --disable-win32-registry compilers: Unknown arg --disable-win32-registry compilers: Checking arg --enable-sjlj-exceptions compilers: Unknown arg --enable-sjlj-exceptions compilers: Checking arg --enable-hash-synchronization compilers: Unknown arg --enable-hash-synchronization compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg (reconfigured) compilers: Unknown arg (reconfigured) compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.4.4 compilers: Unknown arg 3.4.4 compilers: Checking arg (cygming compilers: Unknown arg (cygming compilers: Checking arg special) compilers: Unknown arg special) compilers: Checking arg (gdc compilers: Unknown arg (gdc compilers: Checking arg 0.12, compilers: Unknown arg 0.12, compilers: Checking arg using compilers: Unknown arg using compilers: Checking arg dmd compilers: Unknown arg dmd compilers: Checking arg 0.125) compilers: Unknown arg 0.125) compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg --dll-search-prefix=cyg compilers: Unknown arg --dll-search-prefix=cyg compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest.exe compilers: Unknown arg conftest.exe compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Checking arg -L/home/feap/mpich2-install/lib compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -lpmpich compilers: Checking arg -lmpich compilers: Checking arg -lfrtbegin compilers: Checking arg -lg2c compilers: Checking arg -lgcc compilers: Checking arg -lcygwin compilers: Found library or library directory: -lcygwin compilers: Checking arg -luser32 compilers: Found library or library directory: -luser32 compilers: Checking arg -lkernel32 compilers: Checking arg -ladvapi32 compilers: Found library or library directory: -ladvapi32 compilers: Checking arg -lshell32 compilers: Found library or library directory: -lshell32 compilers: Checking arg -lgcc compilers: Libraries needed to link Fortran code with the C linker: ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C compilers: Check for Intel PEPCF90 library Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lPEPCF90 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lPEPCF90 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lPEPCF90 collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lPEPCF90 collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lPEPCF90 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Intel PEPCF90 library does not exist compilers: Check that Fortran libraries can be used from C++ Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language Cxx compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:786) TESTING: checkFortranLinkingCxx from config.compilers(python/BuildSystem/config/compilers.py:786) Check that Fortran can be linked against C++ Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Popping language Cxx Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Popping language Cxx Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o cxxobj.o confc.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o cxxobj.o confc.o sh: Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:821) TESTING: checkFortran90 from config.compilers(python/BuildSystem/config/compilers.py:821) Determine whether the Fortran compiler handles F90 Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.F: In program `main': conftest.F:2: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) ^ Fortran 90 feature at (^) unsupported conftest.F:2: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) ^ Invalid declaration of or reference to symbol `selected_int_kind' at (^) [initially seen at (^)] conftest.F:2: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) 1 conftest.F:3: (continued): INTEGER (KIND=int) :: ierr 2 Invalid declaration of or reference to symbol `int' at (2) [initially seen at (1)] } Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Compile failed inside link Fortran compiler does not support F90 Popping language FC ================================================================================ TEST checkFortran90Interface from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:867) TESTING: checkFortran90Interface from config.compilers(python/BuildSystem/config/compilers.py:867) Check for custom F90 interfaces, such as that provided by PETSc ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:931) TESTING: setupFrameworkCompilers from config.compilers(python/BuildSystem/config/compilers.py:931) ================================================================================ TEST configureLibrary from PETSc.packages.Mathematica(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/Mathematica.py:15) TESTING: configureLibrary from PETSc.packages.Mathematica(python/PETSc/packages/Mathematica.py:15) Find a Mathematica installation and check if it can work with PETSc ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/fortranCPP.py:26) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(python/PETSc/utilities/fortranCPP.py:26) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $<'] Defined make rule ".f.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<'] Defined make rule ".F.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:59) TESTING: checkStdC from config.headers(python/BuildSystem/config/headers.py:59) sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... y (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 4 "conftest.c" 2 sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 183 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 4 "conftest.c" 2 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:92) TESTING: checkStat from config.headers(python/BuildSystem/config/headers.py:92) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr... ... (__cdecl__)) fchmod (int __fd, mode_t __mode); int __attribute__((__cdecl__)) fstat ( int __fd, struct stat *__sbuf ); int __attribute__((__cdecl__)) mkdir ( const char *_path, mode_t __mode ); int __attribute__((__cdecl__)) mkfifo ( const char *__path, mode_t __mode ); int __attribute__((__cdecl__)) stat ( const char *__path, struct stat *__sbuf ); mode_t __attribute__((__cdecl__)) umask ( mode_t __mask ); int __attribute__((__cdecl__)) lstat ( const char *__path, struct stat *__buf ); int __attribute__((__cdecl__)) mknod ( const char *__path, mode_t __mode, dev_t __dev ); # 6 "conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:127) TESTING: checkSysWait from config.headers(python/BuildSystem/config/headers.py:127) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:149) TESTING: checkTime from config.headers(python/BuildSystem/config/headers.py:149) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_... ... d, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *evp, timer_t *timerid); int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *value, struct itimerspec *ovalue); int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 9 "/usr/inc... ... itimerval { struct timeval it_interval; struct timeval it_value; }; # 73 "/usr/include/sys/time.h" 3 4 int __attribute__((__cdecl__)) gettimeofday (struct timeval *__p, struct timezone *__z); int __attribute__((__cdecl__)) settimeofday (const struct timeval *, const struct timezone *); int __attribute__((__cdecl__)) utimes (const char *__path, const struct timeval *__tvp); int __attribute__((__cdecl__)) getitimer (int __which, struct itimerval *__value); int __attribute__((__cdecl__)) setitimer (int __which, const struct itimerval *__value, struct itimerval *__ovalue); # 4 "conftest.c" 2 Defined "HAVE_SYS_TIME_H" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:17: dos.h: No such file or directory ret = 256 error message = {conftest.c:3:17: dos.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 14 "/usr/include/endian.h" 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 15 "/usr/include/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 14 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/sys/fcntl.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/s... ... ); int __attribute__((__cdecl__)) mkfifo ( const char *__path, mode_t __mode ); int __attribute__((__cdecl__)) stat ( const char *__path, struct stat *__sbuf ); mode_t __attribute__((__cdecl__)) umask ( mode_t __mask ); int __attribute__((__cdecl__)) lstat ( const char *__path, struct stat *__buf ); int __attribute__((__cdecl__)) mknod ( const char *__path, mode_t __mode, dev_t __dev ); # 165 "/usr/include/sys/fcntl.h" 2 3 4 extern int open (const char *, int, ...); extern int creat (const char *, mode_t); extern int fcntl (int, int, ...); # 15 "/usr/include/fcntl.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/float.h" 1 3 4 # 4 "conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/io.h" 1 3 4 # 21 "/usr/include/io.h" 3 4 extern long get_osfhandle(int); extern int setmode (int __fd, int __mode); int access(const char *__path, int __amode); # 4 "conftest.c" 2 Defined "HAVE_IO_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 1 3 4 # 11 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 ... ... 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 14 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 7 "/usr/inclu... ... nt fsmblks; int uordblks; int fordblks; int keepcost; }; extern void * malloc (size_t); extern void free (void *); extern void * realloc (void *, size_t); extern void * calloc (size_t, size_t); extern void * memalign (size_t, size_t); extern struct mallinfo mallinfo (void); extern void malloc_stats (void); extern int mallopt (int, int); extern size_t malloc_usable_size (void *); # 112 "/usr/include/malloc.h" 3 4 extern void * valloc (size_t); extern void * pvalloc (size_t); extern int malloc_trim (size_t); # 138 "/usr/include/malloc.h" 3 4 extern void mstats (char *); # 4 "conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 42 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/confi... ... attr_t {char __dummy;} *pthread_rwlockattr_t; # 373 "/usr/include/sys/types.h" 2 3 4 # 43 "/usr/include/pwd.h" 2 3 4 struct passwd { char *pw_name; char *pw_passwd; uid_t pw_uid; gid_t pw_gid; char *pw_comment; char *pw_gecos; char *pw_dir; char *pw_shell; }; struct passwd *getpwuid (uid_t); struct passwd *getpwnam (const char *); int getpwnam_r (const char *, struct passwd *, char *, size_t , struct passwd **); int getpwuid_r (uid_t, struct passwd *, char *, size_t, struct passwd **); struct passwd *getpwent (void); void setpwent (void); void endpwent (void); # 4 "conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 12 "/usr/include/search.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 13 "/usr/include/search.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config... ... *); void *tdelete (const void * __restrict, void ** __restrict, int (*) (const void *, const void *)); void tdestroy (void *, void (*)(void *)); void *tfind (const void *, void **, int (*) (const void *, const void *)); void *tsearch (const void *, void **, int (*) (const void *, const void *)); void twalk (const void *, void (*) (const void *, VISIT, int)); void *lfind (const void *, const void *, size_t *, size_t, int (*) (const void *, const void *)); void *lsearch (const void *, void *, size_t *, size_t, int (*) (const void *, const void *)); # 4 "conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/s... ... nt __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 5 "/usr/include/strings.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stropts.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:21: stropts.h: No such file or directory ret = 256 error message = {conftest.c:3:21: stropts.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 1 "/usr/include/sys/unistd.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/... ... ibute__((__cdecl__)) setdtablesize (int); useconds_t __attribute__((__cdecl__)) ualarm (useconds_t __useconds, useconds_t __interval); unsigned __attribute__((__cdecl__)) usleep (unsigned int __useconds); int __attribute__((__cdecl__)) gethostname (char *__name, size_t __len); char * __attribute__((__cdecl__)) mktemp (char *); void __attribute__((__cdecl__)) sync (void); int __attribute__((__cdecl__)) readlink (const char *__path, char *__buf, int __buflen); int __attribute__((__cdecl__)) symlink (const char *__name1, const char *__name2); # 5 "/usr/include/unistd.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/machine/endian.h" 1 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 4 "/usr/include/machine/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 12 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/... ... -cygwin/3.4.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 14 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 15 "/usr/include/sys/param.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 4 # 16 "/usr/include/sys/procfs.h" 3 4 # 1 "/usr/include/cygwin/core_dump.h" 1 3 4 # 16 "/usr/include/cygwin/core_dump.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 1 3 4 # 16 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 3 # 47 "/usr/lib/gcc/i686-pc-cygwin/3.4.... ... ead_info { DWORD tid; BOOL is_active_thread; CONTEXT thread_context; } __attribute__ ((packed)) ; struct win32_core_module_info { void* base_address; int module_name_size; char module_name[1]; } __attribute__ ((packed)) ; struct win32_pstatus { unsigned long data_type; union { struct win32_core_process_info process_info; struct win32_core_thread_info thread_info; struct win32_core_module_info module_info; } data ; } __attribute__ ((packed)) ; typedef struct win32_pstatus win32_pstatus_t ; # 17 "/usr/include/sys/procfs.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 14 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/... ... im_t rlim_max; }; struct rusage { struct timeval ru_utime; struct timeval ru_stime; long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; int getrlimit (int __resource, struct rlimit *__rlp); int setrlimit (int __resource, const struct rlimit *__rlp); int getrusage (int __who, struct rusage *__rusage); int getpriority (int which, id_t who); int setpriority (int which, id_t who, int value); # 4 "conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/in... ... "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 9 "/usr/include/sys/times.h" 2 3 4 typedef unsigned long clock_t; struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; clock_t __attribute__((__cdecl__)) times (struct tms *); # 4 "conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 18 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[20]; char nodename[20]; char release[20]; char version[20]; char machine[20]; }; int uname (struct utsname *); # 4 "conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... y (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 183 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 4 "conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 14 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 15 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # ... ... int sendmsg(int s, const struct msghdr *msg, int flags); int sendto (int, const void *, int __len, int __flags, const struct sockaddr *__to, int __tolen); int setsockopt (int __s, int __level, int __optname, const void *optval, int __optlen); int getsockopt (int __s, int __level, int __optname, void *__optval, int *__optlen); int shutdown (int, int); int socket (int __family, int __type, int __protocol); int socketpair (int __domain, int __type, int __protocol, int *__socket_vec); struct servent *getservbyname (const char *__name, const char *__proto); # 4 "conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 14 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cy... ... /usr/include/sys/wait.h" 2 3 4 # 41 "/usr/include/sys/wait.h" 3 4 pid_t wait (int *); pid_t waitpid (pid_t, int *, int); pid_t wait3 (int *__status, int __options, struct rusage *__rusage); pid_t wait4 (pid_t __pid, int *__status, int __options, struct rusage *__rusage); union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 4 "conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 14 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/cygwin/in.h" 1 3 4 # 21 "/usr/include/cygwin/in.h" 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 18 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef long int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uin... ... unsigned short int __ntohs(unsigned short int); extern __inline__ unsigned long int __constant_ntohl(unsigned long int); extern __inline__ unsigned short int __constant_ntohs(unsigned short int); extern __inline__ unsigned long int __ntohl(unsigned long int x) { __asm__("xchgb %b0,%h0\n\t" "rorl $16,%0\n\t" "xchgb %b0,%h0" :"=q" (x) : "0" (x)); return x; } extern __inline__ unsigned short int __ntohs(unsigned short int x) { __asm__("xchgb %b0,%h0" : "=q" (x) : "0" (x)); return x; } # 179 "/usr/include/cygwin/in.h" 2 3 4 # 15 "/usr/include/netinet/in.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 73 "/usr/include/netdb.h" 3 4 struct hostent { const char *h_name; char **h_aliases; short h_addrtype; short h_length; char **h_addr_list; }; struct netent { char *n_name; char **n_aliases; short n_addrtype; unsigned long n_net; }; struct servent { char *s_name; char **s_aliases; short s_port; char *s_proto; }; struct protoent { char *p_name; char **p_aliases; short p_proto; }; struct rpcent { c... ... tent *getnetent (void); struct protoent *getprotobyname (const char *); struct protoent *getprotobynumber (int); struct protoent *getprotoent (void); struct servent *getservbyname (const char *, const char *); struct servent *getservbyport (int, const char *); struct servent *getservent (void); struct rpcent *getrpcent (void); struct rpcent *getrpcbyname (const char *); struct rpcent *getrpcbynumber (int); const char *hstrerror (int); void herror (const char *); void sethostent (int); void setnetent (int); void setprotoent (int); void setservent (int); void setrpcent (int); # 4 "conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: Direct.h: No such file or directory ret = 256 error message = {conftest.c:3:20: Direct.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_... ... d, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *evp, timer_t *timerid); int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *value, struct itimerspec *ovalue); int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 1 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 4 # 13 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/winsock2.h" 1 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/winsock2.h" 3 4 # 18 "/usr/lib/gcc/i68... ... i_canonname; struct sockaddr *ai_addr; struct addrinfo *ai_next; }; # 322 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 struct sockaddr_in6_old { short sin6_family; u_short sin6_port; u_long sin6_flowinfo; struct in6_addr sin6_addr; }; typedef union sockaddr_gen{ struct sockaddr Address; struct sockaddr_in AddressIn; struct sockaddr_in6_old AddressIn6; } sockaddr_gen; typedef struct _INTERFACE_INFO { u_long iiFlags; sockaddr_gen iiAddress; sockaddr_gen iiBroadcastAddress; sockaddr_gen iiNetmask; } INTERFACE_INFO, *LPINTERFACE_INFO; # 4 "conftest.c" 2 Defined "HAVE_WS2TCPIP_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr... ... thread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 373 "/usr/include/sys/types.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/WindowsX.h" 1 3 4 # 5 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/WindowsX.h" 3 # 4 "conftest.c" 2 Defined "HAVE_WINDOWSX_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:17: dos.h: No such file or directory ret = 256 error message = {conftest.c:3:17: dos.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 14 "/usr/include/endian.h" 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 15 "/usr/include/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 14 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/sys/fcntl.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/s... ... ); int __attribute__((__cdecl__)) mkfifo ( const char *__path, mode_t __mode ); int __attribute__((__cdecl__)) stat ( const char *__path, struct stat *__sbuf ); mode_t __attribute__((__cdecl__)) umask ( mode_t __mask ); int __attribute__((__cdecl__)) lstat ( const char *__path, struct stat *__buf ); int __attribute__((__cdecl__)) mknod ( const char *__path, mode_t __mode, dev_t __dev ); # 165 "/usr/include/sys/fcntl.h" 2 3 4 extern int open (const char *, int, ...); extern int creat (const char *, mode_t); extern int fcntl (int, int, ...); # 15 "/usr/include/fcntl.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/float.h" 1 3 4 # 4 "conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/io.h" 1 3 4 # 21 "/usr/include/io.h" 3 4 extern long get_osfhandle(int); extern int setmode (int __fd, int __mode); int access(const char *__path, int __amode); # 4 "conftest.c" 2 Defined "HAVE_IO_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 1 3 4 # 11 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 ... ... 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 14 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 7 "/usr/inclu... ... nt fsmblks; int uordblks; int fordblks; int keepcost; }; extern void * malloc (size_t); extern void free (void *); extern void * realloc (void *, size_t); extern void * calloc (size_t, size_t); extern void * memalign (size_t, size_t); extern struct mallinfo mallinfo (void); extern void malloc_stats (void); extern int mallopt (int, int); extern size_t malloc_usable_size (void *); # 112 "/usr/include/malloc.h" 3 4 extern void * valloc (size_t); extern void * pvalloc (size_t); extern int malloc_trim (size_t); # 138 "/usr/include/malloc.h" 3 4 extern void mstats (char *); # 4 "conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 42 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/confi... ... attr_t {char __dummy;} *pthread_rwlockattr_t; # 373 "/usr/include/sys/types.h" 2 3 4 # 43 "/usr/include/pwd.h" 2 3 4 struct passwd { char *pw_name; char *pw_passwd; uid_t pw_uid; gid_t pw_gid; char *pw_comment; char *pw_gecos; char *pw_dir; char *pw_shell; }; struct passwd *getpwuid (uid_t); struct passwd *getpwnam (const char *); int getpwnam_r (const char *, struct passwd *, char *, size_t , struct passwd **); int getpwuid_r (uid_t, struct passwd *, char *, size_t, struct passwd **); struct passwd *getpwent (void); void setpwent (void); void endpwent (void); # 4 "conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 12 "/usr/include/search.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 13 "/usr/include/search.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config... ... *); void *tdelete (const void * __restrict, void ** __restrict, int (*) (const void *, const void *)); void tdestroy (void *, void (*)(void *)); void *tfind (const void *, void **, int (*) (const void *, const void *)); void *tsearch (const void *, void **, int (*) (const void *, const void *)); void twalk (const void *, void (*) (const void *, VISIT, int)); void *lfind (const void *, const void *, size_t *, size_t, int (*) (const void *, const void *)); void *lsearch (const void *, void *, size_t *, size_t, int (*) (const void *, const void *)); # 4 "conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/s... ... nt __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 5 "/usr/include/strings.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stropts.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:21: stropts.h: No such file or directory ret = 256 error message = {conftest.c:3:21: stropts.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 1 "/usr/include/sys/unistd.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/... ... ibute__((__cdecl__)) setdtablesize (int); useconds_t __attribute__((__cdecl__)) ualarm (useconds_t __useconds, useconds_t __interval); unsigned __attribute__((__cdecl__)) usleep (unsigned int __useconds); int __attribute__((__cdecl__)) gethostname (char *__name, size_t __len); char * __attribute__((__cdecl__)) mktemp (char *); void __attribute__((__cdecl__)) sync (void); int __attribute__((__cdecl__)) readlink (const char *__path, char *__buf, int __buflen); int __attribute__((__cdecl__)) symlink (const char *__name1, const char *__name2); # 5 "/usr/include/unistd.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/machine/endian.h" 1 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 4 "/usr/include/machine/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 12 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/... ... -cygwin/3.4.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 14 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 15 "/usr/include/sys/param.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 4 # 16 "/usr/include/sys/procfs.h" 3 4 # 1 "/usr/include/cygwin/core_dump.h" 1 3 4 # 16 "/usr/include/cygwin/core_dump.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 1 3 4 # 16 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 3 # 47 "/usr/lib/gcc/i686-pc-cygwin/3.4.... ... ead_info { DWORD tid; BOOL is_active_thread; CONTEXT thread_context; } __attribute__ ((packed)) ; struct win32_core_module_info { void* base_address; int module_name_size; char module_name[1]; } __attribute__ ((packed)) ; struct win32_pstatus { unsigned long data_type; union { struct win32_core_process_info process_info; struct win32_core_thread_info thread_info; struct win32_core_module_info module_info; } data ; } __attribute__ ((packed)) ; typedef struct win32_pstatus win32_pstatus_t ; # 17 "/usr/include/sys/procfs.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 14 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/... ... im_t rlim_max; }; struct rusage { struct timeval ru_utime; struct timeval ru_stime; long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; int getrlimit (int __resource, struct rlimit *__rlp); int setrlimit (int __resource, const struct rlimit *__rlp); int getrusage (int __who, struct rusage *__rusage); int getpriority (int which, id_t who); int setpriority (int which, id_t who, int value); # 4 "conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/in... ... "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 9 "/usr/include/sys/times.h" 2 3 4 typedef unsigned long clock_t; struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; clock_t __attribute__((__cdecl__)) times (struct tms *); # 4 "conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 18 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[20]; char nodename[20]; char release[20]; char version[20]; char machine[20]; }; int uname (struct utsname *); # 4 "conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... y (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 183 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 4 "conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 14 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 15 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # ... ... int sendmsg(int s, const struct msghdr *msg, int flags); int sendto (int, const void *, int __len, int __flags, const struct sockaddr *__to, int __tolen); int setsockopt (int __s, int __level, int __optname, const void *optval, int __optlen); int getsockopt (int __s, int __level, int __optname, void *__optval, int *__optlen); int shutdown (int, int); int socket (int __family, int __type, int __protocol); int socketpair (int __domain, int __type, int __protocol, int *__socket_vec); struct servent *getservbyname (const char *__name, const char *__proto); # 4 "conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 14 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cy... ... /usr/include/sys/wait.h" 2 3 4 # 41 "/usr/include/sys/wait.h" 3 4 pid_t wait (int *); pid_t waitpid (pid_t, int *, int); pid_t wait3 (int *__status, int __options, struct rusage *__rusage); pid_t wait4 (pid_t __pid, int *__status, int __options, struct rusage *__rusage); union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 4 "conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 14 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/cygwin/in.h" 1 3 4 # 21 "/usr/include/cygwin/in.h" 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 18 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef long int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uin... ... unsigned short int __ntohs(unsigned short int); extern __inline__ unsigned long int __constant_ntohl(unsigned long int); extern __inline__ unsigned short int __constant_ntohs(unsigned short int); extern __inline__ unsigned long int __ntohl(unsigned long int x) { __asm__("xchgb %b0,%h0\n\t" "rorl $16,%0\n\t" "xchgb %b0,%h0" :"=q" (x) : "0" (x)); return x; } extern __inline__ unsigned short int __ntohs(unsigned short int x) { __asm__("xchgb %b0,%h0" : "=q" (x) : "0" (x)); return x; } # 179 "/usr/include/cygwin/in.h" 2 3 4 # 15 "/usr/include/netinet/in.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 73 "/usr/include/netdb.h" 3 4 struct hostent { const char *h_name; char **h_aliases; short h_addrtype; short h_length; char **h_addr_list; }; struct netent { char *n_name; char **n_aliases; short n_addrtype; unsigned long n_net; }; struct servent { char *s_name; char **s_aliases; short s_port; char *s_proto; }; struct protoent { char *p_name; char **p_aliases; short p_proto; }; struct rpcent { c... ... tent *getnetent (void); struct protoent *getprotobyname (const char *); struct protoent *getprotobynumber (int); struct protoent *getprotoent (void); struct servent *getservbyname (const char *, const char *); struct servent *getservbyport (int, const char *); struct servent *getservent (void); struct rpcent *getrpcent (void); struct rpcent *getrpcbyname (const char *); struct rpcent *getrpcbynumber (int); const char *hstrerror (int); void herror (const char *); void sethostent (int); void setnetent (int); void setprotoent (int); void setservent (int); void setrpcent (int); # 4 "conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: Direct.h: No such file or directory ret = 256 error message = {conftest.c:3:20: Direct.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_... ... d, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *evp, timer_t *timerid); int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *value, struct itimerspec *ovalue); int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 1 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 4 # 13 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/winsock2.h" 1 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/winsock2.h" 3 4 # 18 "/usr/lib/gcc/i68... ... i_canonname; struct sockaddr *ai_addr; struct addrinfo *ai_next; }; # 322 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 struct sockaddr_in6_old { short sin6_family; u_short sin6_port; u_long sin6_flowinfo; struct in6_addr sin6_addr; }; typedef union sockaddr_gen{ struct sockaddr Address; struct sockaddr_in AddressIn; struct sockaddr_in6_old AddressIn6; } sockaddr_gen; typedef struct _INTERFACE_INFO { u_long iiFlags; sockaddr_gen iiAddress; sockaddr_gen iiBroadcastAddress; sockaddr_gen iiNetmask; } INTERFACE_INFO, *LPINTERFACE_INFO; # 4 "conftest.c" 2 Defined "HAVE_WS2TCPIP_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr... ... thread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 373 "/usr/include/sys/types.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/WindowsX.h" 1 3 4 # 5 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/WindowsX.h" 3 # 4 "conftest.c" 2 Defined "HAVE_WINDOWSX_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:157) TESTING: checkRecursiveMacros from config.headers(python/BuildSystem/config/headers.py:157) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: ================================================================================ TEST checkMemcmp from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:79) TESTING: checkMemcmp from config.functions(python/BuildSystem/config/functions.py:79) Check for 8-bit clean memcmp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: ================================================================================ TEST checkSysinfo from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:102) TESTING: checkSysinfo from config.functions(python/BuildSystem/config/functions.py:102) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for function sysinfo sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sysinfo' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sysinfo' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sysinfo(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sysinfo) || defined (__stub___sysinfo) choke me #else sysinfo(); #endif ; return 0; } ================================================================================ TEST checkVPrintf from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(python/BuildSystem/config/functions.py:125) Checking for function vprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'vprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char vprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_vprintf) || defined (__stub___vprintf) choke me #else vprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_VPRINTF" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: ================================================================================ TEST checkSignalHandlerType from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:132) TESTING: checkSignalHandlerType from config.functions(python/BuildSystem/config/functions.py:132) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:142) TESTING: checkFreeReturnType from config.functions(python/BuildSystem/config/functions.py:142) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:6: error: void value not ignored as it ought to be } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sbreak' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sbreak' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_task_info' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_task_info' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__ACCESS" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__GETCWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'memmove' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sigset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sigset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sigset) || defined (__stub___sigset) choke me #else sigset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__SLEEP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'snprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_snprintf) || defined (__stub___snprintf) choke me #else snprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__fullpath' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__fullpath' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__LSEEK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_stricmp' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_stricmp' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'bzero' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_bzero) || defined (__stub___bzero) choke me #else bzero(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memcpy' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memcpy' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__ACCESS" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__GETCWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'memmove' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sigset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sigset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sigset) || defined (__stub___sigset) choke me #else sigset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__SLEEP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'snprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_snprintf) || defined (__stub___snprintf) choke me #else snprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__fullpath' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__fullpath' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__LSEEK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_stricmp' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_stricmp' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'bzero' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_bzero) || defined (__stub___bzero) choke me #else bzero(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memcpy' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memcpy' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sbreak' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sbreak' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_task_info' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_task_info' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(python/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(python/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: sigfpe.h: No such file or directory ret = 256 error message = {conftest.c:3:20: sigfpe.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:19: fpxcp.h: No such file or directory ret = 256 error message = {conftest.c:3:19: fpxcp.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:27: floatingpoint.h: No such file or directory ret = 256 error message = {conftest.c:3:27: floatingpoint.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/fortranCommandLine.py:26) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(python/PETSc/utilities/fortranCommandLine.py:26) Check for the mechanism to retrieve command line arguments in Fortran Pushing language C Checking for function _gfortran_iargc sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__gfortran_iargc' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__gfortran_iargc' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _gfortran_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) choke me #else _gfortran_iargc(); #endif ; return 0; } Checking for function ipxfargc_ sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_ipxfargc_' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_ipxfargc_' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char ipxfargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) choke me #else ipxfargc_(); #endif ; return 0; } Checking for function f90_unix_MP_iargc sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_f90_unix_MP_iargc' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_f90_unix_MP_iargc' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char f90_unix_MP_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) choke me #else f90_unix_MP_iargc(); #endif ; return 0; } Checking for function PXFGETARG sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } Checking for function GETARG@16 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c:10: error: stray '@' in program conftest.c:10: error: parse error before numeric constant conftest.c:17:27: missing ')' after "defined" conftest.c:17:28: missing binary operator before token "16" conftest.c: In function `main': conftest.c:20: error: stray '@' in program conftest.c:20: error: `GETARG' undeclared (first use in this function) conftest.c:20: error: (Each undeclared identifier is reported only once conftest.c:20: error: for each function it appears in.) conftest.c:20: error: parse error before numeric constant } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char GETARG@16(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG@16(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) choke me #else GETARG@16(); #endif ; return 0; } Compile failed inside link Popping language C ================================================================================ TEST checkSizeTypes from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:42) TESTING: checkSizeTypes from config.types(python/BuildSystem/config/types.py:42) Checks for types associated with sizes, such as size_t. Checking for type: size_t sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:47) TESTING: checkFileTypes from config.types(python/BuildSystem/config/types.py:47) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkPID from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:53) TESTING: checkPID from config.types(python/BuildSystem/config/types.py:53) Checks for pid_t, and defines it if necessary Checking for type: pid_t sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:57) TESTING: checkUID from config.types(python/BuildSystem/config/types.py:57) Checks for uid_t and gid_t, and defines them if necessary sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 sys/types.h ================================================================================ TEST checkSignal from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:64) TESTING: checkSignal from config.types(python/BuildSystem/config/types.py:64) Checks the return type of signal() and defines RETSIGTYPE to that type name sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkComplex from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:85) TESTING: checkComplex from config.types(python/BuildSystem/config/types.py:85) Check for complex numbers in namespace std, and if --enable-complex is given, defines PETSC_USE_COMPLEX if they are present Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:110) TESTING: checkFortranKind from config.types(python/BuildSystem/config/types.py:110) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.F: In program `main': conftest.F:3: integer(kind=selected_int_kind(10)) i ^ Invalid declaration of or reference to symbol `selected_int_kind' at (^) [initially seen at (^)] conftest.F:4: real(kind=selected_real_kind(10)) d ^ Invalid declaration of or reference to symbol `selected_real_kind' at (^) [initially seen at (^)] In file included from conftest.F:0: conftest.F:4: warning: unused variable 'd' conftest.F:3: warning: unused variable 'i' } Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:122) TESTING: checkFortranDReal from config.types(python/BuildSystem/config/types.py:122) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o sh: Popping language FC ================================================================================ TEST checkConst from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:130) TESTING: checkConst from config.types(python/BuildSystem/config/types.py:130) Checks for working const, and if not found defines it to empty string sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:34: warning: declaration of 'x' shadows a previous local conftest.c:7: warning: shadowed declaration is here conftest.c:40: warning: declaration of 'p' shadows a previous local conftest.c:10: warning: shadowed declaration is here } Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:186) TESTING: checkEndian from config.types(python/BuildSystem/config/types.py:186) If the machine is big endian, defines WORDS_BIGENDIAN sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:9: error: `not' undeclared (first use in this function) conftest.c:9: error: (Each undeclared identifier is reported only once conftest.c:9: error: for each function it appears in.) conftest.c:9: error: parse error before "big" } Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_VOID_P" to "4" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_LONG" to "4" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:281) TESTING: checkBitsPerByte from config.types(python/BuildSystem/config/types.py:281) Determine the nubmer of bits per byte and define BITS_PER_BYTE sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST checkMath from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:176) TESTING: checkMath from config.libraries(python/BuildSystem/config/libraries.py:176) Check for sin() in libm, the math library Checking for functions ['sin', 'floor', 'log10', 'sqrt'] in library [''] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:192) TESTING: checkMathErf from config.libraries(python/BuildSystem/config/libraries.py:192) Check for erf() in libm, the math library Checking for functions ['erf'] in library [] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkDynamic from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:201) TESTING: checkDynamic from config.libraries(python/BuildSystem/config/libraries.py:201) Check for the header and libraries necessary for dynamic library manipulation Checking for functions ['dlopen'] in library ['dl'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -ldl collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -ldl collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); int main() { dlopen() ; return 0; } Popping language C Checking for header: dlfcn.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 19 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *, int); extern void *dlsym (void *, const char *); extern int dlclose (void *); extern char *dlerror (void); extern void dlfork (int); # 4 "conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST configureTimers from PETSc.utilities.timer(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(python/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_GETCLOCK PETSC_USE_DCLOCK PETSC_USE_NT_TIME. Checking for functions ['MPI_CRAY_barrier'] in library [''] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_MPI_CRAY_barrier' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_MPI_CRAY_barrier' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); int main() { MPI_CRAY_barrier() ; return 0; } Popping language C Cray-MPI test failure ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:35) TESTING: configureMissingDefines from PETSc.utilities.missing(python/PETSc/utilities/missing.py:35) Checks for limits sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:45) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(python/PETSc/utilities/missing.py:45) Checks if u_short is undefined sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `foo' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:51) TESTING: configureMissingFunctions from PETSc.utilities.missing(python/PETSc/utilities/missing.py:51) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:71) TESTING: configureMissingSignals from PETSc.utilities.missing(python/PETSc/utilities/missing.py:71) Check for missing signals, and define MISSING_ if necessary sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: ================================================================================ TEST configureMissingPrototypes from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:88) TESTING: configureMissingPrototypes from PETSc.utilities.missing(python/PETSc/utilities/missing.py:88) sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:14: warning: unused variable `err' } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Possible ERROR while running compiler: error message = {conftest.cc: In function `int main()': conftest.cc:14: warning: unused variable 'err' } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language Cxx ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:110) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(python/PETSc/utilities/missing.py:110) ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/libraryOptions.py:46) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(python/PETSc/utilities/libraryOptions.py:46) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Checking for functions ['bgl_perfctr_void'] in library [''] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_bgl_perfctr_void' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_bgl_perfctr_void' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); int main() { bgl_perfctr_void() ; return 0; } Popping language C BGL/IBM test failure Defined "USE_32BIT_INT" to "1" ================================================================================ TEST configureISColorValueType from PETSc.utilities.libraryOptions(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/libraryOptions.py:99) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(python/PETSc/utilities/libraryOptions.py:99) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_CHAR" Defined "IS_COLORING_MAX" to "255" Defined "IS_COLOR_VALUE_TYPE" to "char" ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Triangle(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.Triangle(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.TetGen(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.TetGen(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PARTY(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Matlab(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need Lgrind ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Chaco(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ccafe(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.ccafe(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need c2html ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Boost(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.Boost(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need Sowing ================================================================================ TEST configureLibrary from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:381) TESTING: configureLibrary from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:381) ================================================================================ Checking for a functional BLAS and LAPACK in IRIX Mathematics library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libcomplib.sgimath.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libcomplib.sgimath.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Another IRIX Mathematics library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libscs.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lscs collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lscs collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libscs.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lscs collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lscs collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in IBM ESSL Mathematics library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libessl.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lessl collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lessl collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libessl.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lessl collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lessl collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default compiler locations ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in HPUX ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libveclib.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libveclib.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default compiler locations /usr/local/lib ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/usr/local/lib/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/usr/local/lib/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default Atlas location /usr/local/lib ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/usr/local/lib/libcblas.a', '/usr/local/lib/libf77blas.a', '/usr/local/lib/libatlas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/usr/local/lib/libcblas.a', '/usr/local/lib/libf77blas.a', '/usr/local/lib/libatlas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default Atlas location /usr/local/lib ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/usr/local/lib/libf77blas.a', '/usr/local/lib/libatlas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lf77blas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lf77blas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/usr/local/lib/libf77blas.a', '/usr/local/lib/libatlas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lf77blas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lf77blas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default compiler locations with G77 ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['liblapack.a', 'libblas.a', 'libg2c.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -llapack collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -llapack collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['liblapack.a', 'libblas.a', 'libg2c.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -llapack collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -llapack collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in MacOSX BLAS/LAPACK library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/System/Library/Frameworks/vecLib.framework/vecLib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /System/Library/Frameworks/vecLib.framework/vecLib: No such file or directory output: ret = 256 error message = {gcc: /System/Library/Frameworks/vecLib.framework/vecLib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/System/Library/Frameworks/vecLib.framework/vecLib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /System/Library/Frameworks/vecLib.framework/vecLib: No such file or directory output: ret = 256 error message = {gcc: /System/Library/Frameworks/vecLib.framework/vecLib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Sun sunperf BLAS/LAPACK library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libsunperf.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libsunperf.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Sun sunperf BLAS/LAPACK library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libsunperf.a', 'libF77.a', 'libM77.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libsunperf.a', 'libF77.a', 'libM77.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Sun sunperf BLAS/LAPACK library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libsunperf.a', 'libfui.a', 'libfsu.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libsunperf.a', 'libfui.a', 'libfsu.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL stdcall library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL stdcall library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL stdcall library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL stdcall library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL stdcall library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in PETSc location 1 ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/home/feap/Library/blaslapack/lib/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/home/feap/Library/blaslapack/lib/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in PETSc location 2 ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in PETSc location 3 ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Downloading fblaslapack Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -V Executing: /home/feap/mpich2-install/bin/mpif77 -V sh: Popping language FC Found fblaslapack, do not need to download Pushing language FC Popping language FC Pushing language FC Popping language FC ================================================================================= Compiling FBLASLAPACK; this may take several minutes ================================================================================= sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;make -f tmpmakefile cleanblaslapck cleanlib; make -f tmpmakefile Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;make -f tmpmakefile cleanblaslapck cleanlib; make -f tmpmakefile sh: /usr/bin/rm -f */*.o /usr/bin/rm -f ./*.a ./*.lib make[1]: Entering directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/blas1' /home/feap/mpich2-install/bin/mpif77 -c -Wall -g dasum.f daxpy.f dcabs1.f dcopy.f ddot.f dmach.f dnrm2.f drot.f drotg.f dscal.f dswap.f dzasum.f dznrm2.f idamax.f izamax.f zaxpy.f zcopy.f zdotc.f zdotu.f zdrot.f zdscal.f zmach.f zrotg.f zscal.f zswap.f /usr/bin/ar cr ../libfblas.a dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dmach.o dnrm2.o drot.o drotg.o dscal.o dswap.o dzasum.o dznrm2.o idamax.o izamax.o zaxpy.o zcopy.o zdotc.o zdotu.o zdrot.o zdsc... ... sy2.o zggesx.o zhegvx.o zlaqps.o zlatrz.o ztgsyl.o /usr/bin/rm -f zgelsd.o zggev.o zhpgvd.o zlar1v.o zptts2.o ztzrzf.o zgelsy.o zggevx.o zhpgvx.o zlarcm.o zstegr.o zunmr3.o zgeqp3.o zgtts2.o zlacp2.o zlarrv.o ztgex2.o zunmrz.o zgesc2.o zhbgvd.o zlals0.o zlarzb.o ztgexc.o zgesdd.o zhbgvx.o zlalsa.o zlarz.o ztgsen.o zgetc2.o zheevr.o zlalsd.o zlarzt.o ztgsna.o zgges.o zhegvd.o zlaqp2.o zlatdf.o ztgsy2.o zggesx.o zhegvx.o zlaqps.o zlatrz.o ztgsyl.o make[1]: Leaving directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/lapack-extra4' sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;mv -f libfblas.a libflapack.a cygwin-c-real-opt Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;mv -f libfblas.a libflapack.a cygwin-c-real-opt sh: sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;cp -f tmpmakefile cygwin-c-real-opt Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;cp -f tmpmakefile cygwin-c-real-opt sh: ================================================================================ Checking for a functional BLAS and LAPACK in Downloaded BLAS/LAPACK library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFBLAS" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C ================================================================================ TEST checkESSL from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:431) TESTING: checkESSL from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:431) Check for the IBM ESSL library Checking for functions ['iessl'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_iessl' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_iessl' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); int main() { iessl() ; return 0; } Popping language C ================================================================================ TEST checkMissing from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:437) TESTING: checkMissing from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:437) Check for missing LAPACK routines Checking for functions ['dgesvd'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dgeev'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dgetrf'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dpotrf'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dpotrs'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.UMFPACK(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.UMFPACK(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.babel(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.babel(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureLibrary from PETSc.packages.X11(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/X11.py:91) TESTING: configureLibrary from PETSc.packages.X11(python/PETSc/packages/X11.py:91) Checks for X windows, sets PETSC_HAVE_X11 if found, and defines X_CFLAGS, X_PRE_LIBS, X_LIBS, and X_EXTRA_LIBS sh: xmkmf Executing: xmkmf sh: imake -DUseInstalled -I/usr/X11R6/lib/X11/config sh: /usr/bin/make acfindx Executing: /usr/bin/make acfindx sh: X_INCLUDE_ROOT = /usr/X11R6/include X_USR_LIB_DIR = /usr/X11R6/lib X_LIB_DIR = /usr/X11R6/lib/X11 Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:5: warning: implicit declaration of function `XSetForeground' } Source: #include "confdefs.h" #include "conffix.h" int main() { XSetForeground(); ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/usr/X11R6/lib -lX11 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/usr/X11R6/lib -lX11 sh: Popping language C Found X11 includes and libraries Substituting "X_CFLAGS" with "-I/usr/X11R6/include" Substituting "X_LIBS" with "-L/usr/X11R6/lib -lX11" Substituting "X_PRE_LIBS" with "" Substituting "X_EXTRA_LIBS" with "" Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:479) TESTING: configureLibrary from PETSc.packages.MPI(python/PETSc/packages/MPI.py:479) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in User specified root directory MPI: [] ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['MPI_Init', 'MPI_Comm_create'] in library [] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Checking for headers User specified root directory MPI: ['/home/feap/mpich2-install/include', '/home/feap/mpich2-install/include'] ================================================================================ TEST checkInclude from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:46) TESTING: checkInclude from config.headers(python/BuildSystem/config/headers.py:46) Checks if a particular include file can be found along particular include paths sh: /home/feap/mpich2-install/bin/mpicc -E -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/home/feap/mpich2-install/include/mpi.h" 1 # 24 "/home/feap/mpich2-install/include/mpi.h" typedef int MPI_Datatype; # 95 "/home/feap/mpich2-install/include/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; # 115 "/home/feap/mpich2-install/include/mpi.h" typedef struct ADIOI_FileD *MPI_File; typedef int MPI_Op; # 187 "/home/feap/mpich2-install/include/mpi.h" typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2 } MPIR_Topo... ... st *, int *, MPI_Status *); int PMPI_Wait(MPI_Request *, MPI_Status *); int PMPIO_Testall(int, MPI_Request *, int *, MPI_Status *); int PMPIO_Waitall(int, MPI_Request *, MPI_Status *); int PMPIO_Testany(int, MPI_Request *, int *, int *, MPI_Status *); int PMPIO_Waitany(int, MPI_Request *, int *, MPI_Status *); int PMPIO_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *); int PMPIO_Testsome(int, MPI_Request *, int *, int *, MPI_Status *); MPI_Fint PMPIO_Request_c2f(MPI_Request); MPI_Request PMPIO_Request_f2c(MPI_Fint); # 1105 "/home/feap/mpich2-install/include/mpi.h" 2 # 4 "conftest.c" 2 Found header files ['mpi.h'] in ['/home/feap/mpich2-install/include', '/home/feap/mpich2-install/include'] ================================================================================ TEST configureConversion from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:152) TESTING: configureConversion from PETSc.packages.MPI(python/PETSc/packages/MPI.py:152) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Defined "HAVE_MPI_COMM_F2C" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Defined "HAVE_MPI_COMM_C2F" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureTypes from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:172) TESTING: configureTypes from PETSc.packages.MPI(python/PETSc/packages/MPI.py:172) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMissingPrototypes from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:199) TESTING: configureMissingPrototypes from PETSc.packages.MPI(python/PETSc/packages/MPI.py:199) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:450) TESTING: SGIMPICheck from PETSc.packages.MPI(python/PETSc/packages/MPI.py:450) Returns true if SGI MPI is used Checking for functions ['MPI_SGI_barrier'] in library [] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_MPI_SGI_barrier' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_MPI_SGI_barrier' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); int main() { MPI_SGI_barrier() ; return 0; } Popping language C SGI MPI test failure ================================================================================ TEST FortranMPICheck from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:460) TESTING: FortranMPICheck from PETSc.packages.MPI(python/PETSc/packages/MPI.py:460) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h Checking for functions [''] in library [] [] Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Popping language FC Checking for fortran mpi_init() Checking for functions [''] in library [] [] Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Popping language FC Popping language FC ================================================================================ TEST checkSharedLibrary from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:110) TESTING: checkSharedLibrary from PETSc.packages.MPI(python/PETSc/packages/MPI.py:110) Check that the libraries for MPI are shared libraries ================================================================================ TEST configureMPIRUN from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:122) TESTING: configureMPIRUN from PETSc.packages.MPI(python/PETSc/packages/MPI.py:122) Checking for mpirun Pushing language C Popping language C Checking for program /home/feap/mpich2-install/bin/mpiexec...found Defined make macro "MPIRUN" to "/home/feap/mpich2-install/bin/mpiexec " sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a Executing: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a Executing: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: /home/feap/mpich2-install/bin/mpiexec -np 1 ./conftest.exe sh: /home/feap/mpich2-install/bin/mpiexec -np 1 ./conftest.exe Executing: /home/feap/mpich2-install/bin/mpiexec -np 1 ./conftest.exe sh: mpiexec_lele: cannot connect to local mpd (/tmp/mpd2.console_feap); possible causes: 1. no mpd is running on this host 2. an mpd is running but was started without a "console" (-n option) ERROR while running executable: Could not execute '/home/feap/mpich2-install/bin/mpiexec -np 1 ./conftest.exe': mpiexec_lele: cannot connect to local mpd (/tmp/mpd2.console_feap); possible causes: 1. no mpd is running on this host 2. an mpd is running but was started without a "console" (-n option) Library was not shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sundials(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.sundials(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.spooles(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:323) TESTING: configureLibrary from PETSc.packages.spooles(python/PETSc/package.py:323) Find an installation ando check if it can work with PETSc ================================================================================== Checking for a functional spooles sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2; rm -f Make.inc Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2; rm -f Make.inc sh: Pushing language C Popping language C Have to rebuild SPOOLES, Make.inc != /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/Make.inc ================================================================================= Compiling spooles; this may take several minutes ================================================================================= sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2; rm -rf /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2; rm -rf /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt sh: sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2; SPOOLES_INSTALL_DIR=/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt; export SPOOLES_INSTALL_DIR; make clean; make lib; HLISTS=`ls *.h`; cd cygwin-c-real-opt; for hlist in $HLISTS; do dir=`echo ${hlist} | sed s/"\.h"//`; mkdir $dir; cp ../$dir/*.h $dir/.; done; cp ../*.h .; cd ..; cd cygwin-c-real-opt; mv ../*.a .; mkdir MPI/src; mv ../MPI/src/*.a MPI/src/.;rm -f MPI.h Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2; SPOOLES_INSTALL_DIR=/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt; export SPOOLES_INSTALL_DIR; make clean; make lib; HLISTS=`ls *.h`; cd cygwin-c-real-opt; for hlist in $HLISTS; do dir=`echo ${hlist} | sed s/"\.h"//`; mkdir $dir; cp ../$dir/*.h $dir/.; done; cp ../*.h .; cd ..; cd cygwin-c-real-opt; mv ../*.a .; mkdir MPI/src; mv ../MPI/src/*.a MPI/src/.;rm -f MPI.h sh: cd A2 ; make clean make[1]: Entering directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/A2' cd src ; make clean make[2]: Entering directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/A2/src' rm -f *.a *.o make[2]: Leaving directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/A2/src' cd drivers ; make clean make[2]: Entering directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/A2/drivers' rm -f *.a *.o test_norms testQR make[2]: Leaving directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages... ... me/feap/mpich2-install/include symbfacMPI.c -o symbfacMPI.o /usr/bin/ar cr spoolesMPI.a symbfacMPI.o rm symbfacMPI.o /home/feap/mpich2-install/bin/mpicc -c -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include utilities.c -o utilities.o /usr/bin/ar cr spoolesMPI.a utilities.o rm utilities.o spoolesMPI.a is now up-to-date make[2]: Leaving directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/MPI/src' make[1]: Leaving directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/MPI' Do NOT need to compile SPOOLES downloaded libraries sh: cp -f /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/Make.inc /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt Executing: cp -f /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/Make.inc /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt sh: Checking for library in Download SPOOLES: ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/MPI/src/spoolesMPI.a', '/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/spooles.a'] ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['InpMtx_init'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/MPI/src/spoolesMPI.a', '/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/spooles.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a', '/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/MPI/src/spoolesMPI.a /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/spooles.a -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/MPI/src/spoolesMPI.a /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/spooles.a -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBSPOOLESMPI" to "1" Defined "HAVE_LIBSPOOLES" to "1" Popping language C Checking for headers Download SPOOLES: ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/', '/home/feap/mpich2-install/include'] ================================================================================ TEST checkInclude from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:46) TESTING: checkInclude from config.headers(python/BuildSystem/config/headers.py:46) Checks if a particular include file can be found along particular include paths sh: /home/feap/mpich2-install/bin/mpicc -E -I/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/ -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E -I/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/ -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/MPI/spoolesMPI.h" 1 # 1 "/home/feap/mpich2-install/include/mpi.h" 1 # 24 "/home/feap/mpich2-install/include/mpi.h" typedef int MPI_Datatype; # 95 "/home/feap/mpich2-install/include/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; # 115 "/home/feap/mpich2-install/include/mpi.h" typedef struct ADIOI_FileD *MPI_File; typedef int MPI_Op; # 187 "... ... "/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/MPI/spoolesMPI.h" void DenseMtx_MPI_scatterAddRows ( DenseMtx *Y, DenseMtx *X, IVL *sendIVL, IVL *recvIVL, int stats[], int msglvl, FILE *msgFile, int firsttag, MPI_Comm comm ) ; # 1177 "/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/MPI/spoolesMPI.h" void makeSendRecvIVLs ( IV *supportedIV, IV *globalmapIV, IVL *sendIVL, IVL *recvIVL, int stats[], int msglvl, FILE *msgFile, int firsttag, MPI_Comm comm ) ; # 4 "conftest.c" 2 Found header files ['MPI/spoolesMPI.h'] in ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/', '/home/feap/mpich2-install/include'] ================================================================================ TEST checkSharedLibrary from PETSc.packages.spooles(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:319) TESTING: checkSharedLibrary from PETSc.packages.spooles(python/PETSc/package.py:319) By default we don't care about checking if shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spai(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.spai(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PLAPACK(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.PLAPACK(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.ParMetis(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:323) TESTING: configureLibrary from PETSc.packages.ParMetis(python/PETSc/package.py:323) Find an installation ando check if it can work with PETSc ================================================================================== Checking for a functional ParMetis ================================================================================= Configuring and compiling ParMetis; this may take several minutes ================================================================================= Checking for library in Download PARMETIS: ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/lib/libparmetis.a', 'libmetis.a'] ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['ParMETIS_V3_PartKway'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/lib/libparmetis.a', 'libmetis.a'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/lib -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/lib -lparmetis -lmetis Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/lib -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/lib -lparmetis -lmetis sh: Defined "HAVE_LIBPARMETIS" to "1" Defined "HAVE_LIBMETIS" to "1" Popping language C Checking for headers Download PARMETIS: ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/include', '/home/feap/mpich2-install/include'] ================================================================================ TEST checkInclude from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:46) TESTING: checkInclude from config.headers(python/BuildSystem/config/headers.py:46) Checks if a particular include file can be found along particular include paths sh: /home/feap/mpich2-install/bin/mpicc -E -I/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/include -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E -I/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/include -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/include/parmetis.h" 1 # 17 "/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/include/parmetis.h" # 1 "/home/feap/mpich2-install/include/mpi.h" 1 # 24 "/home/feap/mpich2-install/include/mpi.h" typedef int MPI_Datatype; # 95 "/home/feap/mpich2-install/include/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; # 115 "/ho... ... ncy, int ndims, float *xyz, idxtype *part, int *options, MPI_Comm comm); void PARRMETIS( idxtype *vtxdist, idxtype *xadj, idxtype *vwgt, idxtype *adjncy, idxtype *adjwgt, idxtype *part, int *options, MPI_Comm comm); void PARUAMETIS( idxtype *vtxdist, idxtype *xadj, idxtype *vwgt, idxtype *adjncy, idxtype *adjwgt, idxtype *part, int *options, MPI_Comm comm); void PARDAMETIS( idxtype *vtxdist, idxtype *xadj, idxtype *vwgt, idxtype *adjncy, idxtype *adjwgt, idxtype *part, int *options, MPI_Comm comm); # 4 "conftest.c" 2 Possible ERROR while running preprocessor: In file included from conftest.c:3: /home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/include/parmetis.h:20:1: warning: "__cdecl" redefined :73:1: warning: this is the location of the previous definition error message = {In file included from conftest.c:3: /home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/include/parmetis.h:20:1: warning: "__cdecl" redefined :73:1: warning: this is the location of the previous definition } Source: #include "confdefs.h" #include "conffix.h" #include ********************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): --------------------------------------------------------------------------------------- Downloaded parmetis could not be used. Please check install in /home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt ********************************************************************************* File "./config/configure.py", line 166, in petsc_configure File "/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/framework.py", line 807, in configure child.configure() File "/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py", line 396, in configure self.executeTest(self.configureLibrary) File "/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/base.py", line 90, in executeTest return apply(test, args,kargs) File "/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py", line 345, in configureLibrary for location, dir, lib, incl in self.generateGuesses(): File "/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py", line 219, in generateGuesses raise RuntimeError('Downloaded '+self.package+' could not be used. Please check install in '+dir+'\n') ================================================================================= ================================================================================= Previous configure logs below ================================================================================= Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ** Cygwin-python-2.4 detected. Threads do not work correctly with this version * ********* Disabling thread usage for this run of config/configure.py ********** ================================================================================ ================================================================================ ================================================================================ Starting Configure Run at Mon Feb 20 20:16:53 2006 Configure Options: --with-debugging=0 --with-mpi-dir=/home/feap/mpich2-install --download-parmetis=1 --download-prometheus=1 --download-spooles=1 --download-hypre=1 --download-f-blas-lapack=ifneeded --useThreads=0 --with-shared=0 --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions Working directory: /home/feap/Library/petsc-2.3.1-p5 Python version: 2.4.1 (#1, May 27 2005, 18:02:40) [GCC 3.3.3 (cygwin special)] ================================================================================ Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureLibrary from PETSc.packages.PVODE(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.PVODE(python/PETSc/packages/PVODE.py:10) Find a PVODE installation and check if it can work with PETSc ================================================================================ TEST configureLibrary from PETSc.packages.NetCDF(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/NetCDF.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(python/PETSc/packages/NetCDF.py:10) Find a NetCDF installation and check if it can work with PETSc ================================================================================ TEST configureBitKeeper from config.sourceControl(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/sourceControl.py:23) TESTING: configureBitKeeper from config.sourceControl(python/BuildSystem/config/sourceControl.py:23) Find the BitKeeper executable Checking for program /home/feap/mpich2-install/bin/bk...not found Checking for program /usr/local/bin/bk...not found Checking for program /usr/bin/bk...not found Checking for program /bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/bk...not found Checking for program /cygdrive/c/WINDOWS/system32/bk...not found Checking for program /cygdrive/c/WINDOWS/bk...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/bk...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/bk...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/bk...not found Checking for program /cygdrive/c/backup/4print/bk...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/bk...not found Checking for program ./bk...not found Checking for program /bin/bk...not found Checking for program /home/feap/bk...not found ================================================================================ TEST configureCVS from config.sourceControl(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/sourceControl.py:30) TESTING: configureCVS from config.sourceControl(python/BuildSystem/config/sourceControl.py:30) Find the CVS executable Checking for program /home/feap/mpich2-install/bin/cvs...not found Checking for program /usr/local/bin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /bin/cvs...not found Checking for program /usr/X11R6/bin/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/cvs...not found Checking for program /cygdrive/c/WINDOWS/system32/cvs...not found Checking for program /cygdrive/c/WINDOWS/cvs...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/cvs...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/cvs...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/cvs...not found Checking for program /cygdrive/c/backup/4print/cvs...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/cvs...not found Checking for program ./cvs...not found Checking for program /bin/cvs...not found Checking for program /home/feap/cvs...not found ================================================================================ TEST configureSubversion from config.sourceControl(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/sourceControl.py:35) TESTING: configureSubversion from config.sourceControl(python/BuildSystem/config/sourceControl.py:35) Find the Subversion executable Checking for program /home/feap/mpich2-install/bin/svn...not found Checking for program /usr/local/bin/svn...not found Checking for program /usr/bin/svn...found Defined make macro "SVN" to "svn" ================================================================================ TEST configureMkdir from PETSc.utilities.programs(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/programs.py:21) TESTING: configureMkdir from PETSc.utilities.programs(python/PETSc/utilities/programs.py:21) Make sure we can have mkdir automatically make intermediate directories Checking for program /home/feap/mpich2-install/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found sh: /usr/bin/mkdir -p .conftest/tmp Executing: /usr/bin/mkdir -p .conftest/tmp sh: Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configurePrograms from PETSc.utilities.programs(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/programs.py:39) TESTING: configurePrograms from PETSc.utilities.programs(python/PETSc/utilities/programs.py:39) Check for the programs needed to build and run PETSc Checking for program /home/feap/mpich2-install/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /home/feap/mpich2-install/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Checking for program /home/feap/mpich2-install/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /home/feap/mpich2-install/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /home/feap/mpich2-install/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /home/feap/mpich2-install/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /home/feap/mpich2-install/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found sh: /usr/bin/diff -w diff1 diff2 Executing: /usr/bin/diff -w diff1 diff2 sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/feap/ps...not found Checking for program /home/feap/mpich2-install/bin/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" ================================================================================ TEST configureMake from PETSc.utilities.Make(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/Make.py:21) TESTING: configureMake from PETSc.utilities.Make(python/PETSc/utilities/Make.py:21) Check various things about make Checking for program /home/feap/mpich2-install/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" sh: strings /usr/bin/make Executing: strings /usr/bin/make sh: Make check failed: Could not execute 'strings /usr/bin/make': strings: /usr/bin/make: No such file or directory sh: strings /usr/bin/make.exe Executing: strings /usr/bin/make.exe sh: attempt to use unsupported feature: `%s' touch: Archive `%s' does not exist touch: touch: `%s' is not a valid archive touch: Member `%s' does not exist in `%s' touch: Bad return code from ar_member_touch on `%s' [^_] [^_] ! ARFILENAMES/ WVS1 [^_] .SUFFIXES [^_] $(MAKE) ${MAKE} [^_] +t&C @u,A kill *** [%s] Archive member `%s' may be bogus; not deleted *** Archive member `%s' may be bogus; not deleted *** [%s] Deleting file `%s' unlink: *** Deleting file `%s' $P)@ # commands to execute (built-in): %.*s (from `%s', line %lu): $-,@ $:,@ $A,@ $(AR) $(ARFLAGS) $@ $< %.out @rm -f $@ cp ... ... xecvp exit fclose fcntl fdopen fflush fgets fopen fprintf fputs fread free fstat fwrite getcwd getenv getlogin getpid getpwnam kill localtime lseek lstat malloc memcpy memmove memset mkstemp open opendir pipe printf putc puts qsort read readdir realloc remove setlocale setvbuf sigaction sigaddset sigemptyset signal sigprocmask sprintf sscanf stat strcasecmp strcat strchr strcmp strcpy strdup strerror strlen strncasecmp strncmp strrchr strsignal strtoul time unlink vfork vfprintf wait waitpid write libintl_bindtextdomain libintl_gettext libintl_textdomain KERNEL32.dll cygwin1.dll cygintl-2.dll Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC} ${SOBJSC})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(python/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /home/feap/mpich2-install/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...not found Checking for program /bin/gdb...not found Checking for program /usr/X11R6/bin/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/gdb...not found Checking for program /cygdrive/c/WINDOWS/system32/gdb...not found Checking for program /cygdrive/c/WINDOWS/gdb...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/gdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/gdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/gdb...not found Checking for program /cygdrive/c/backup/4print/gdb...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/gdb...not found Checking for program ./gdb...not found Checking for program /bin/gdb...not found Checking for program /home/feap/gdb...not found Checking for program /home/feap/mpich2-install/bin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/dbx...not found Checking for program /cygdrive/c/WINDOWS/system32/dbx...not found Checking for program /cygdrive/c/WINDOWS/dbx...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/dbx...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/dbx...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/dbx...not found Checking for program /cygdrive/c/backup/4print/dbx...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/dbx...not found Checking for program ./dbx...not found Checking for program /bin/dbx...not found Checking for program /home/feap/dbx...not found Checking for program /home/feap/mpich2-install/bin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/xdb...not found Checking for program /cygdrive/c/WINDOWS/system32/xdb...not found Checking for program /cygdrive/c/WINDOWS/xdb...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/xdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/xdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/xdb...not found Checking for program /cygdrive/c/backup/4print/xdb...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/xdb...not found Checking for program ./xdb...not found Checking for program /bin/xdb...not found Checking for program /home/feap/xdb...not found ================================================================================ TEST configureScalarType from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:32) TESTING: configureScalarType from PETSc.utilities.languages(python/PETSc/utilities/languages.py:32) Choose between real and complex numbers Scalar type is real ================================================================================ TEST configurePrecision from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:42) TESTING: configurePrecision from PETSc.utilities.languages(python/PETSc/utilities/languages.py:42) Set the default real number precision for PETSc objects Precision is double ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:65) TESTING: configureCLanguage from PETSc.utilities.languages(python/PETSc/utilities/languages.py:65) Choose between C and C++ bindings Allowing C++ name mangling C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureExternC from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:87) TESTING: configureExternC from PETSc.utilities.languages(python/PETSc/utilities/languages.py:87) Protect C bindings from C++ mangling Defined "USE_EXTERN_CXX" to " " ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:93) TESTING: configureFortranLanguage from PETSc.utilities.languages(python/PETSc/utilities/languages.py:93) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/petscdir.py:35) TESTING: configureDirectories from PETSc.utilities.petscdir(python/PETSc/utilities/petscdir.py:35) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 2 #define PETSC_VERSION_MINOR 3 #define PETSC_VERSION_SUBMINOR 1 #define PETSC_VERSION_PATCH 5 #define PETSC_VERSION_DATE "February, 3, 2006" #define PETSC_VERSION_PATCH_DATE "Sat Feb 11 20:02:43 CST 2006" #define PETSC_VERSION_BK "balay@asterix.mcs.anl.gov|ChangeSet|20060212020213|15075" Defined make macro "DIR" to "/home/feap/Library/petsc-2.3.1-p5" Defined "DIR" to "/home/feap/Library/petsc-2.3.1-p5" sh: /bin/sh /home/feap/Library/petsc-2.3.1-p5/bin/config/config.guess Executing: /bin/sh /home/feap/Library/petsc-2.3.1-p5/bin/config/config.guess sh: i686-pc-cygwin sh: /bin/sh /home/feap/Library/petsc-2.3.1-p5/bin/config/config.sub i686-pc-cygwin Executing: /bin/sh /home/feap/Library/petsc-2.3.1-p5/bin/config/config.sub i686-pc-cygwin sh: i686-pc-cygwin ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/petscdir.py:113) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(python/PETSc/utilities/petscdir.py:113) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/petscdir.py:120) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(python/PETSc/utilities/petscdir.py:120) This is a tarball installation ================================================================================ TEST configureETags from PETSc.utilities.Etags(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(python/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(python/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST checkVendor from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:208) TESTING: checkVendor from config.setCompilers(python/BuildSystem/config/setCompilers.py:208) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:218) TESTING: checkInitialFlags from config.setCompilers(python/BuildSystem/config/setCompilers.py:218) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized executableFlags to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:321) TESTING: checkCCompiler from config.setCompilers(python/BuildSystem/config/setCompilers.py:321) Locate a functional C compiler Checking for program /home/feap/mpich2-install/bin/mpicc...found Defined make macro "CC" to "/home/feap/mpich2-install/bin/mpicc" Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:370) TESTING: checkCPreprocessor from config.setCompilers(python/BuildSystem/config/setCompilers.py:370) Locate a functional C preprocessor Checking for program /home/feap/mpich2-install/bin/mpicc...found Defined make macro "CPP" to "/home/feap/mpich2-install/bin/mpicc -E" Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 183 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 4 "conftest.c" 2 Popping language C ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:468) TESTING: checkCxxCompiler from config.setCompilers(python/BuildSystem/config/setCompilers.py:468) Locate a functional Cxx compiler Checking for program /home/feap/mpich2-install/bin/mpicxx...found Defined make macro "CXX" to "/home/feap/mpich2-install/bin/mpicxx" Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe conftest.o sh: sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:520) TESTING: checkCxxPreprocessor from config.setCompilers(python/BuildSystem/config/setCompilers.py:520) Locate a functional Cxx preprocessor Checking for program /home/feap/mpich2-install/bin/mpicxx...found Defined make macro "CXXCPP" to "/home/feap/mpich2-install/bin/mpicxx -E" Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -E conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -E conftest.cc sh: # 1 "conftest.cc" # 1 "" # 1 "" # 1 "conftest.cc" # 1 "confdefs.h" 1 # 2 "conftest.cc" 2 # 1 "conffix.h" 1 extern "C" { } # 3 "conftest.cc" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/cstdlib" 1 3 # 47 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/cstdlib" 3 # 48 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/cstdlib" 3 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/i686-pc-cygwin/bits/c++config.h" 1 3 # 35 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/i686-pc-cygwin/bits/c++config.h" 3 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/i686-pc-cy... ... ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; inline long abs(long __i) { return labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } } # 4 "conftest.cc" 2 Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:623) TESTING: checkFortranCompiler from config.setCompilers(python/BuildSystem/config/setCompilers.py:623) Locate a functional Fortran compiler Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif77...found Defined make macro "FC" to "/home/feap/mpich2-install/bin/mpif77" Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe conftest.o sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:658) TESTING: checkFortranComments from config.setCompilers(python/BuildSystem/config/setCompilers.py:658) Make sure fortran comment "!" works Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkBrokenMpif90 from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:667) TESTING: checkBrokenMpif90 from config.setCompilers(python/BuildSystem/config/setCompilers.py:667) mpif90 from mpich1 and older c-preprocessor combinations misbehave Pushing language FC Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:707) TESTING: checkPIC from config.setCompilers(python/BuildSystem/config/setCompilers.py:707) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Trying C compiler flag -PIC sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -PIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -PIC conftest.o sh: Possible ERROR while running linker: gcc: unrecognized option `-PIC' output: error message = {gcc: unrecognized option `-PIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -PIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting C linker flag -PIC due to gcc: unrecognized option `-PIC' Rejected C compiler flag -PIC because linker cannot handle it Trying C compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -fPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -fPIC conftest.o sh: Valid C linker flag -fPIC Adding C compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:1: warning: -fPIC ignored for target (all code is position independent) } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -fPIC due to conftest.c:1: warning: -fPIC ignored for target (all code is position independent) Rejected C compiler flag -fPIC Trying C compiler flag -KPIC sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -KPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -KPIC conftest.o sh: Possible ERROR while running linker: gcc: unrecognized option `-KPIC' output: error message = {gcc: unrecognized option `-KPIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -KPIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting C linker flag -KPIC due to gcc: unrecognized option `-KPIC' Rejected C compiler flag -KPIC because linker cannot handle it Popping language C Pushing language Cxx Trying Cxx compiler flag -PIC sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -PIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -PIC conftest.o sh: Possible ERROR while running linker: c++: unrecognized option `-PIC' output: error message = {c++: unrecognized option `-PIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -PIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting Cxx linker flag -PIC due to c++: unrecognized option `-PIC' Rejected Cxx compiler flag -PIC because linker cannot handle it Trying Cxx compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -fPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -fPIC conftest.o sh: Valid Cxx linker flag -fPIC Adding Cxx compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -fPIC conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -fPIC conftest.cc sh: Possible ERROR while running compiler: error message = {conftest.cc:1: warning: -fPIC ignored for target (all code is position independent) } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -fPIC due to conftest.cc:1: warning: -fPIC ignored for target (all code is position independent) Rejected Cxx compiler flag -fPIC Trying Cxx compiler flag -KPIC sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -KPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -KPIC conftest.o sh: Possible ERROR while running linker: c++: unrecognized option `-KPIC' output: error message = {c++: unrecognized option `-KPIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -KPIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting Cxx linker flag -KPIC due to c++: unrecognized option `-KPIC' Rejected Cxx compiler flag -KPIC because linker cannot handle it Popping language Cxx Pushing language FC Trying FC compiler flag -PIC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -PIC conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -PIC conftest.o sh: Possible ERROR while running linker: g77: unrecognized option `-PIC' output: error message = {g77: unrecognized option `-PIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -PIC conftest.o Source: program main end Rejecting FC linker flag -PIC due to g77: unrecognized option `-PIC' Rejected FC compiler flag -PIC because linker cannot handle it Trying FC compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -fPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -fPIC conftest.o sh: Valid FC linker flag -fPIC Adding FC compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -fPIC conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -fPIC conftest.F sh: Possible ERROR while running compiler: error message = {conftest.F:0: warning: -fPIC ignored for target (all code is position independent) /cygdrive/c/WINDOWS/TEMP/ccjf4eqd.f:0: warning: -fPIC ignored for target (all code is position independent) } Source: program main end Rejecting compiler flag -fPIC due to conftest.F:0: warning: -fPIC ignored for target (all code is position independent) /cygdrive/c/WINDOWS/TEMP/ccjf4eqd.f:0: warning: -fPIC ignored for target (all code is position independent) Rejected FC compiler flag -fPIC Trying FC compiler flag -KPIC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -KPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -KPIC conftest.o sh: Possible ERROR while running linker: g77: unrecognized option `-KPIC' output: error message = {g77: unrecognized option `-KPIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -KPIC conftest.o Source: program main end Rejecting FC linker flag -KPIC due to g77: unrecognized option `-KPIC' Rejected FC compiler flag -KPIC because linker cannot handle it Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:747) TESTING: checkLargeFileIO from config.setCompilers(python/BuildSystem/config/setCompilers.py:747) ================================================================================ TEST checkArchiver from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:837) TESTING: checkArchiver from config.setCompilers(python/BuildSystem/config/setCompilers.py:837) Check that the archiver exists and can make a library usable by the compiler Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Checking for program /home/feap/mpich2-install/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /home/feap/mpich2-install/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib -c libconf1.a Executing: /usr/bin/ranlib -c libconf1.a sh: Possible ERROR while running ranlib: error message = {/usr/bin/ranlib: '-c': No such file } Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Checking for program /home/feap/mpich2-install/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /home/feap/mpich2-install/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib libconf1.a Executing: /usr/bin/ranlib libconf1.a sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconf1 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconf1 sh: Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:940) TESTING: checkSharedLinker from config.setCompilers(python/BuildSystem/config/setCompilers.py:940) Check that the linker can produce shared libraries Checking shared linker /home/feap/mpich2-install/bin/mpicc using flags ['-shared'] Checking for program /home/feap/mpich2-install/bin/mpicc...found Defined make macro "LD_SHARED" to "/home/feap/mpich2-install/bin/mpicc" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -shared conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -shared conftest.o sh: Valid C linker flag -shared sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o libconftest.so -shared conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o libconftest.so -shared conftest.o sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lconftest collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lconftest collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Checking shared linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "LD_SHARED" to "/usr/bin/ar" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a Executing: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest sh: Using shared linker /usr/bin/ar with flags [] and library extension a sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:1011) TESTING: checkSharedLinkerPaths from config.setCompilers(python/BuildSystem/config/setCompilers.py:1011) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -flags Executing: /home/feap/mpich2-install/bin/mpicc -flags sh: Trying C linker flag -Wl,-rpath, sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o sh: Valid C linker flag -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 Popping language C Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicc -flags Executing: /home/feap/mpich2-install/bin/mpicc -flags sh: Trying Cxx linker flag -Wl,-rpath, sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o sh: Valid Cxx linker flag -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 Popping language Cxx Pushing language FC sh: /home/feap/mpich2-install/bin/mpicc -flags Executing: /home/feap/mpich2-install/bin/mpicc -flags sh: Trying FC linker flag -Wl,-rpath, sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o sh: Valid FC linker flag -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 Popping language FC ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:1083) TESTING: checkDynamicLinker from config.setCompilers(python/BuildSystem/config/setCompilers.py:1083) Check that the linker can produce dynamic libraries Checking for header: dlfcn.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 19 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *, int); extern void *dlsym (void *, const char *); extern int dlclose (void *); extern char *dlerror (void); extern void dlfork (int); # 4 "conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for functions ['dlopen', 'dlsym', 'dlclose'] in library ['dl'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -ldl Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -ldl sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -ldl collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -ldl collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); int main() { dlopen() ; return 0; } Popping language C Checking for functions ['dlopen', 'dlsym', 'dlclose'] in library [''] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Popping language C sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 Checking dynamic linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "DYNAMICLINKER" to "/usr/bin/ar" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /usr/bin/ar -o libconftest.so conftest.o Executing: /usr/bin/ar -o libconftest.so conftest.o sh: Possible ERROR while running linker: /usr/bin/ar: no operation specified output: ret = 256 error message = {/usr/bin/ar: no operation specified } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Source: #include "confdefs.h" #include "conffix.h" int foo(void) {return 0;} Checking dynamic linker /home/feap/mpich2-install/bin/mpicc using flags ['-shared'] Checking for program /home/feap/mpich2-install/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/home/feap/mpich2-install/bin/mpicc" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -shared conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -shared conftest.o sh: Valid C linker flag -shared sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o libconftest.so -shared conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o libconftest.so -shared conftest.o sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Using dynamic linker /home/feap/mpich2-install/bin/mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:1129) TESTING: output from config.setCompilers(python/BuildSystem/config/setCompilers.py:1129) Output module data as defines and substitutions Substituting "CC" with "/home/feap/mpich2-install/bin/mpicc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/home/feap/mpich2-install/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/home/feap/mpich2-install/bin/mpicxx" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "/home/feap/mpich2-install/bin/mpicxx -E" Substituting "FC" with "/home/feap/mpich2-install/bin/mpif77" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "" Substituting "SHARED_LIBRARY_FLAG" with "" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilerFlags.py:66) TESTING: configureCompilerFlags from config.compilerFlags(python/BuildSystem/config/compilerFlags.py:66) Get the default compiler flags Pushing language C sh: /home/feap/mpich2-install/bin/mpicc --version Executing: /home/feap/mpich2-install/bin/mpicc --version sh: gcc (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) Copyright (C) 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /home/feap/mpich2-install/bin/mpicc gcc (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) sh: /home/feap/mpich2-install/bin/mpicc -show Executing: /home/feap/mpich2-install/bin/mpicc -show sh: gcc -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -Wall sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall conftest.c sh: Added C compiler flag -Wall Trying C compiler flag -Wshadow sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow conftest.c sh: Added C compiler flag -Wshadow Trying C compiler flag -Wwrite-strings sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings conftest.c sh: Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-long-double sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -Wno-long-double conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -Wno-long-double conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {cc1: error: unrecognized command line option "-Wno-long-double" } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -Wno-long-double due to nonzero status from link Rejecting compiler flag -Wno-long-double due to cc1: error: unrecognized command line option "-Wno-long-double" PETSc Error: No output file produced Rejected C compiler flag -Wno-long-double Trying C compiler flag -fomit-frame-pointer sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer conftest.c sh: Added C compiler flag -fomit-frame-pointer Trying C compiler flag -Wno-strict-aliasing sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing conftest.c sh: Added C compiler flag -Wno-strict-aliasing sh: /home/feap/mpich2-install/bin/mpicc -show Executing: /home/feap/mpich2-install/bin/mpicc -show sh: gcc -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -O sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Added C compiler flag -O Popping language C Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx --version Executing: /home/feap/mpich2-install/bin/mpicxx --version sh: c++ (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) Copyright (C) 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /home/feap/mpich2-install/bin/mpicxx c++ (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) sh: /home/feap/mpich2-install/bin/mpicxx -show Executing: /home/feap/mpich2-install/bin/mpicxx -show sh: c++ -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lmpichcxx -lpmpich -lmpich sh: c++ --help Executing: c++ --help sh: Usage: c++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by c++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -Wall sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall conftest.cc sh: Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wshadow sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow conftest.cc sh: Added Cxx compiler flag -Wshadow Trying Cxx compiler flag -Wwrite-strings sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings conftest.cc sh: Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-long-double sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -Wno-long-double conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -Wno-long-double conftest.cc sh: Possible ERROR while running compiler: ret = 256 error message = {cc1plus: error: unrecognized command line option "-Wno-long-double" } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -Wno-long-double due to nonzero status from link Rejecting compiler flag -Wno-long-double due to cc1plus: error: unrecognized command line option "-Wno-long-double" PETSc Error: No output file produced Rejected Cxx compiler flag -Wno-long-double Trying Cxx compiler flag -fomit-frame-pointer sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer conftest.cc sh: Added Cxx compiler flag -fomit-frame-pointer Trying Cxx compiler flag -Wno-strict-aliasing sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing conftest.cc sh: Added Cxx compiler flag -Wno-strict-aliasing sh: /home/feap/mpich2-install/bin/mpicxx -show Executing: /home/feap/mpich2-install/bin/mpicxx -show sh: c++ -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lmpichcxx -lpmpich -lmpich sh: c++ --help Executing: c++ --help sh: Usage: c++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by c++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -O sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc sh: Added Cxx compiler flag -O Popping language Cxx Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 --version Executing: /home/feap/mpich2-install/bin/mpif77 --version sh: GNU Fortran (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) Copyright (C) 2004 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING or type the command `info -f g77 Copying'. getCompilerVersion: /home/feap/mpich2-install/bin/mpif77 GNU Fortran (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) sh: /home/feap/mpich2-install/bin/mpif77 -show Executing: /home/feap/mpich2-install/bin/mpif77 -show sh: g77 -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich sh: g77 --help Executing: g77 --help sh: Usage: g77 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g77. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -Wall sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall conftest.F sh: Added FC compiler flag -Wall sh: /home/feap/mpich2-install/bin/mpif77 -show Executing: /home/feap/mpich2-install/bin/mpif77 -show sh: g77 -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich sh: g77 --help Executing: g77 --help sh: Usage: g77 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g77. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -O sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F sh: Added FC compiler flag -O Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(python/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================= WARNING! Compiling PETSc with no debugging, this should only be done for timing and production runs. All development should be done when configured using --with-debugging=1 ================================================================================= ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/arch.py:39) TESTING: configureArchitecture from PETSc.utilities.arch(python/PETSc/utilities/arch.py:39) Checks PETSC_ARCH and sets if not set Defined "ARCH" to "cygwin" Defined "ARCH_NAME" to ""cygwin-c-real-opt"" Substituting "ARCH" with "cygwin-c-real-opt" ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/sharedLibraries.py:41) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(python/PETSc/utilities/sharedLibraries.py:41) Defined make rule "shared_arch" with dependencies "" and code [] Defined make macro "BUILDSHAREDLIB" to "no" ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/sharedLibraries.py:53) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(python/PETSc/utilities/sharedLibraries.py:53) Checks whether dynamic libraries should be used, for which you must - Specify --with-dynamic - Have found a working dynamic linker (with dlfcn.h and libdl) Defines PETSC_USE_DYNAMIC_LIBRARIES if they are used Dynamic libraries - disabled ================================================================================ TEST configureBmakeDir from PETSc.utilities.bmakeDir(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/bmakeDir.py:26) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(python/PETSc/utilities/bmakeDir.py:26) Makes bmake/$PETSC_ARCH if it does not exist Changed persistence directory to bmake/cygwin-c-real-opt sh: /home/feap/mpich2-install/bin/mpicc --help Executing: /home/feap/mpich2-install/bin/mpicc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:126) TESTING: checkRestrict from config.compilers(python/BuildSystem/config/compilers.py:126) Check for the C/CXX restrict keyword Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:5: error: syntax error before "x" } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:5: warning: unused variable `x' } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:244) TESTING: checkCFormatting from config.compilers(python/BuildSystem/config/compilers.py:244) Activate format string checking if using the GNU compilers compilers: Added gcc printf format checking Defined "PRINTF_FORMAT_CHECK(A,B)" to "__attribute__((format (printf, A, B)))" ================================================================================ TEST checkCStaticInline from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:97) TESTING: checkCStaticInline from config.compilers(python/BuildSystem/config/compilers.py:97) Check for C keyword: static inline Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `i' } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:254) TESTING: checkDynamicLoadFlag from config.compilers(python/BuildSystem/config/compilers.py:254) Checks that dlopen() takes RTLD_GLOBAL, and defines PETSC_HAVE_RTLD_GLOBAL if it does sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:153) TESTING: checkCLibraries from config.compilers(python/BuildSystem/config/compilers.py:153) Determines the libraries needed to link with C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: mpicc for 1.0.3 Possible ERROR while running linker: Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lpmpich -lmpich -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc output: mpicc for 1.0.3 error message = {Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lpmpich -lmpich -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Checking arg mpicc compilers: Unknown arg mpicc compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.0.3 compilers: Unknown arg 1.0.3 compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Unknown arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Checking arg --verbose compilers: Unknown arg --verbose compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --exec-prefix=/usr compilers: Unknown arg --exec-prefix=/usr compilers: Checking arg --sysconfdir=/etc compilers: Unknown arg --sysconfdir=/etc compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Unknown arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-version-specific-runtime-libs compilers: Unknown arg --enable-version-specific-runtime-libs compilers: Checking arg --without-x compilers: Unknown arg --without-x compilers: Checking arg --enable-libgcj compilers: Unknown arg --enable-libgcj compilers: Checking arg --disable-java-awt compilers: Unknown arg --disable-java-awt compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-interpreter compilers: Unknown arg --enable-interpreter compilers: Checking arg --disable-libgcj-debug compilers: Unknown arg --disable-libgcj-debug compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --enable-java-gc=boehm compilers: Unknown arg --enable-java-gc=boehm compilers: Checking arg --disable-win32-registry compilers: Unknown arg --disable-win32-registry compilers: Checking arg --enable-sjlj-exceptions compilers: Unknown arg --enable-sjlj-exceptions compilers: Checking arg --enable-hash-synchronization compilers: Unknown arg --enable-hash-synchronization compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg (reconfigured) compilers: Unknown arg (reconfigured) compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.4.4 compilers: Unknown arg 3.4.4 compilers: Checking arg (cygming compilers: Unknown arg (cygming compilers: Checking arg special) compilers: Unknown arg special) compilers: Checking arg (gdc compilers: Unknown arg (gdc compilers: Checking arg 0.12, compilers: Unknown arg 0.12, compilers: Checking arg using compilers: Unknown arg using compilers: Checking arg dmd compilers: Unknown arg dmd compilers: Checking arg 0.125) compilers: Unknown arg 0.125) compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg --dll-search-prefix=cyg compilers: Unknown arg --dll-search-prefix=cyg compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest.exe compilers: Unknown arg conftest.exe compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Checking arg -L/home/feap/mpich2-install/lib compilers: Found library or library directory: -L/home/feap/mpich2-install/lib compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -lpmpich compilers: Found library or library directory: -lpmpich compilers: Checking arg -lmpich compilers: Found library or library directory: -lmpich compilers: Checking arg -lgcc compilers: Checking arg -lcygwin compilers: Found library or library directory: -lcygwin compilers: Checking arg -luser32 compilers: Found library or library directory: -luser32 compilers: Checking arg -lkernel32 compilers: Checking arg -ladvapi32 compilers: Found library or library directory: -ladvapi32 compilers: Checking arg -lshell32 compilers: Found library or library directory: -lshell32 compilers: Checking arg -lgcc compilers: Libraries needed to link C code with another linker: ['-L/home/feap/mpich2-install/lib', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lpmpich', '-lmpich', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] compilers: Check that C libraries can be used from Fortran Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O conftest.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lpmpich -lmpich -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O conftest.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lpmpich -lmpich -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../libcygwin.a(libcmain.o):: undefined reference to `_WinMain@16' collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../libcygwin.a(libcmain.o):: undefined reference to `_WinMain@16' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O conftest.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lpmpich -lmpich -lcygwin -luser32 -ladvapi32 -lshell32 Source: program main end Popping language FC compilers: C libraries cannot directly be used from Fortran compilers: Error message from compiling {Cannot compile/link FC with /home/feap/mpich2-install/bin/mpicc.} sh: /home/feap/mpich2-install/bin/mpicxx --help Executing: /home/feap/mpich2-install/bin/mpicxx --help sh: Usage: c++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by c++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:126) TESTING: checkRestrict from config.compilers(python/BuildSystem/config/compilers.py:126) Check for the C/CXX restrict keyword Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.cc: In function `int main()': conftest.cc:5: error: expected primary-expression before "float" conftest.cc:5: error: expected `;' before "float" } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc sh: Possible ERROR while running compiler: error message = {conftest.cc: In function `int main()': conftest.cc:5: warning: unused variable 'x' } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:286) TESTING: checkCxxNamespace from config.compilers(python/BuildSystem/config/compilers.py:286) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc sh: sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc sh: Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:261) TESTING: checkCxxOptionalExtensions from config.compilers(python/BuildSystem/config/compilers.py:261) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:111) TESTING: checkCxxStaticInline from config.compilers(python/BuildSystem/config/compilers.py:111) Check for C++ keyword: static inline Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc sh: Possible ERROR while running compiler: error message = {conftest.cc: In function `int main()': conftest.cc:6: warning: unused variable 'i' } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:301) TESTING: checkCxxLibraries from config.compilers(python/BuildSystem/config/compilers.py:301) Determines the libraries needed to link with C++ Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: mpicxx for 1.0.3 Possible ERROR while running linker: Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lmpichcxx -lpmpich -lmpich -lstdc++ -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc output: mpicxx for 1.0.3 error message = {Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lmpichcxx -lpmpich -lmpich -lstdc++ -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx compilers: Checking arg mpicxx compilers: Unknown arg mpicxx compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.0.3 compilers: Unknown arg 1.0.3 compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Unknown arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Checking arg --verbose compilers: Unknown arg --verbose compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --exec-prefix=/usr compilers: Unknown arg --exec-prefix=/usr compilers: Checking arg --sysconfdir=/etc compilers: Unknown arg --sysconfdir=/etc compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Unknown arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-version-specific-runtime-libs compilers: Unknown arg --enable-version-specific-runtime-libs compilers: Checking arg --without-x compilers: Unknown arg --without-x compilers: Checking arg --enable-libgcj compilers: Unknown arg --enable-libgcj compilers: Checking arg --disable-java-awt compilers: Unknown arg --disable-java-awt compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-interpreter compilers: Unknown arg --enable-interpreter compilers: Checking arg --disable-libgcj-debug compilers: Unknown arg --disable-libgcj-debug compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --enable-java-gc=boehm compilers: Unknown arg --enable-java-gc=boehm compilers: Checking arg --disable-win32-registry compilers: Unknown arg --disable-win32-registry compilers: Checking arg --enable-sjlj-exceptions compilers: Unknown arg --enable-sjlj-exceptions compilers: Checking arg --enable-hash-synchronization compilers: Unknown arg --enable-hash-synchronization compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg (reconfigured) compilers: Unknown arg (reconfigured) compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.4.4 compilers: Unknown arg 3.4.4 compilers: Checking arg (cygming compilers: Unknown arg (cygming compilers: Checking arg special) compilers: Unknown arg special) compilers: Checking arg (gdc compilers: Unknown arg (gdc compilers: Checking arg 0.12, compilers: Unknown arg 0.12, compilers: Checking arg using compilers: Unknown arg using compilers: Checking arg dmd compilers: Unknown arg dmd compilers: Checking arg 0.125) compilers: Unknown arg 0.125) compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg --dll-search-prefix=cyg compilers: Unknown arg --dll-search-prefix=cyg compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest.exe compilers: Unknown arg conftest.exe compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Checking arg -L/home/feap/mpich2-install/lib compilers: Found library or library directory: -L/home/feap/mpich2-install/lib Library already in C list so skipping in C++ compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 Library already in C list so skipping in C++ compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. Library already in C list so skipping in C++ compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -lmpichcxx compilers: Found library or library directory: -lmpichcxx compilers: Checking arg -lpmpich compilers: Found library or library directory: -lpmpich Library already in C list so skipping in C++ compilers: Checking arg -lmpich compilers: Found library or library directory: -lmpich Library already in C list so skipping in C++ compilers: Checking arg -lstdc++ compilers: Found library or library directory: -lstdc++ compilers: Checking arg -lgcc compilers: Checking arg -lcygwin compilers: Found library or library directory: -lcygwin Library already in C list so skipping in C++ compilers: Checking arg -luser32 compilers: Found library or library directory: -luser32 Library already in C list so skipping in C++ compilers: Checking arg -lkernel32 compilers: Checking arg -ladvapi32 compilers: Found library or library directory: -ladvapi32 Library already in C list so skipping in C++ compilers: Checking arg -lshell32 compilers: Found library or library directory: -lshell32 Library already in C list so skipping in C++ compilers: Checking arg -lgcc compilers: Libraries needed to link Cxx code with another linker: ['-lmpichcxx', '-lstdc++'] compilers: Check that Cxx libraries can be used from C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lmpichcxx -lstdc++ Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lmpichcxx -lstdc++ sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lmpichcxx -lstdc++ Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lmpichcxx -lstdc++ sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O conftest.o -lmpichcxx -lstdc++ Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O conftest.o -lmpichcxx -lstdc++ sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O conftest.o -lmpichcxx -lstdc++ Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O conftest.o -lmpichcxx -lstdc++ sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language FC ================================================================================ TEST checkFortranTypeSizes from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:405) TESTING: checkFortranTypeSizes from config.compilers(python/BuildSystem/config/compilers.py:405) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F sh: Possible ERROR while running compiler: error message = {conftest.F: In program `main': In file included from conftest.F:0: conftest.F:2: warning: unused variable 'variable' } Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:464) TESTING: checkFortranNameMangling from config.compilers(python/BuildSystem/config/compilers.py:464) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Popping language C Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O conftest.o confc.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O conftest.o confc.o sh: Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:497) TESTING: checkFortranNameManglingDouble from config.compilers(python/BuildSystem/config/compilers.py:497) Checks if symbols containing and underscore append and extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Popping language C Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O conftest.o confc.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O conftest.o confc.o sh: Popping language FC compilers: Fortran appends and extra underscore to names containing underscores Defined "HAVE_FORTRAN_UNDERSCORE_UNDERSCORE" to "1" ================================================================================ TEST checkFortranPreprocessor from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:507) TESTING: checkFortranPreprocessor from config.compilers(python/BuildSystem/config/compilers.py:507) Determine if Fortran handles preprocessing properly Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O -DPTesting conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O -DPTesting conftest.F sh: Added FC compiler flag Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranLibraries from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:529) TESTING: checkFortranLibraries from config.compilers(python/BuildSystem/config/compilers.py:529) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -V Executing: /home/feap/mpich2-install/bin/mpif77 -V sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -v -Wall -O conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -v -Wall -O conftest.o sh: mpif77 for 1.0.3 Possible ERROR while running linker: Driving: g77 -o conftest.exe -v -Wall -O conftest.o -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lpmpich -lmpich -lfrtbegin -lg2c -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc output: mpif77 for 1.0.3 error message = {Driving: g77 -o conftest.exe -v -Wall -O conftest.o -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lpmpich -lmpich -lfrtbegin -lg2c -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -v -Wall -O conftest.o Source: program main end Popping language FC compilers: Checking arg mpif77 compilers: Unknown arg mpif77 compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.0.3 compilers: Unknown arg 1.0.3 compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg g77 compilers: Unknown arg g77 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest.exe compilers: Unknown arg conftest.exe compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -O compilers: Unknown arg -O compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -I/home/feap/mpich2-install/include compilers: Found include directory: /home/feap/mpich2-install/include compilers: Checking arg -L/home/feap/mpich2-install/lib compilers: Found library or library directory: -L/home/feap/mpich2-install/lib compilers: Checking arg -lpmpich compilers: Found library or library directory: -lpmpich compilers: Checking arg -lmpich compilers: Found library or library directory: -lmpich compilers: Checking arg -lfrtbegin sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 compilers: Found library or library directory: -lfrtbegin compilers: Checking arg -lg2c compilers: Found library or library directory: -lg2c compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Unknown arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Checking arg --verbose compilers: Unknown arg --verbose compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --exec-prefix=/usr compilers: Unknown arg --exec-prefix=/usr compilers: Checking arg --sysconfdir=/etc compilers: Unknown arg --sysconfdir=/etc compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Unknown arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-version-specific-runtime-libs compilers: Unknown arg --enable-version-specific-runtime-libs compilers: Checking arg --without-x compilers: Unknown arg --without-x compilers: Checking arg --enable-libgcj compilers: Unknown arg --enable-libgcj compilers: Checking arg --disable-java-awt compilers: Unknown arg --disable-java-awt compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-interpreter compilers: Unknown arg --enable-interpreter compilers: Checking arg --disable-libgcj-debug compilers: Unknown arg --disable-libgcj-debug compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --enable-java-gc=boehm compilers: Unknown arg --enable-java-gc=boehm compilers: Checking arg --disable-win32-registry compilers: Unknown arg --disable-win32-registry compilers: Checking arg --enable-sjlj-exceptions compilers: Unknown arg --enable-sjlj-exceptions compilers: Checking arg --enable-hash-synchronization compilers: Unknown arg --enable-hash-synchronization compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg (reconfigured) compilers: Unknown arg (reconfigured) compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.4.4 compilers: Unknown arg 3.4.4 compilers: Checking arg (cygming compilers: Unknown arg (cygming compilers: Checking arg special) compilers: Unknown arg special) compilers: Checking arg (gdc compilers: Unknown arg (gdc compilers: Checking arg 0.12, compilers: Unknown arg 0.12, compilers: Checking arg using compilers: Unknown arg using compilers: Checking arg dmd compilers: Unknown arg dmd compilers: Checking arg 0.125) compilers: Unknown arg 0.125) compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg --dll-search-prefix=cyg compilers: Unknown arg --dll-search-prefix=cyg compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest.exe compilers: Unknown arg conftest.exe compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Checking arg -L/home/feap/mpich2-install/lib compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -lpmpich compilers: Checking arg -lmpich compilers: Checking arg -lfrtbegin compilers: Checking arg -lg2c compilers: Checking arg -lgcc compilers: Checking arg -lcygwin compilers: Found library or library directory: -lcygwin compilers: Checking arg -luser32 compilers: Found library or library directory: -luser32 compilers: Checking arg -lkernel32 compilers: Checking arg -ladvapi32 compilers: Found library or library directory: -ladvapi32 compilers: Checking arg -lshell32 compilers: Found library or library directory: -lshell32 compilers: Checking arg -lgcc compilers: Libraries needed to link Fortran code with the C linker: ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C compilers: Check for Intel PEPCF90 library Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lPEPCF90 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lPEPCF90 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lPEPCF90 collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lPEPCF90 collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lPEPCF90 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Intel PEPCF90 library does not exist compilers: Check that Fortran libraries can be used from C++ Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc sh: sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language Cxx compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:786) TESTING: checkFortranLinkingCxx from config.compilers(python/BuildSystem/config/compilers.py:786) Check that Fortran can be linked against C++ Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc sh: Popping language Cxx Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc sh: Popping language Cxx Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O conftest.o cxxobj.o confc.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O conftest.o cxxobj.o confc.o sh: Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:821) TESTING: checkFortran90 from config.compilers(python/BuildSystem/config/compilers.py:821) Determine whether the Fortran compiler handles F90 Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.F: In program `main': conftest.F:2: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) ^ Fortran 90 feature at (^) unsupported conftest.F:2: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) ^ Invalid declaration of or reference to symbol `selected_int_kind' at (^) [initially seen at (^)] conftest.F:2: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) 1 conftest.F:3: (continued): INTEGER (KIND=int) :: ierr 2 Invalid declaration of or reference to symbol `int' at (2) [initially seen at (1)] } Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Compile failed inside link Fortran compiler does not support F90 Popping language FC ================================================================================ TEST checkFortran90Interface from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:867) TESTING: checkFortran90Interface from config.compilers(python/BuildSystem/config/compilers.py:867) Check for custom F90 interfaces, such as that provided by PETSc ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:931) TESTING: setupFrameworkCompilers from config.compilers(python/BuildSystem/config/compilers.py:931) ================================================================================ TEST configureLibrary from PETSc.packages.Mathematica(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/Mathematica.py:15) TESTING: configureLibrary from PETSc.packages.Mathematica(python/PETSc/packages/Mathematica.py:15) Find a Mathematica installation and check if it can work with PETSc ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/fortranCPP.py:26) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(python/PETSc/utilities/fortranCPP.py:26) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $<'] Defined make rule ".f.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<'] Defined make rule ".F.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:59) TESTING: checkStdC from config.headers(python/BuildSystem/config/headers.py:59) sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... y (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 4 "conftest.c" 2 sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 183 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 4 "conftest.c" 2 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:92) TESTING: checkStat from config.headers(python/BuildSystem/config/headers.py:92) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr... ... (__cdecl__)) fchmod (int __fd, mode_t __mode); int __attribute__((__cdecl__)) fstat ( int __fd, struct stat *__sbuf ); int __attribute__((__cdecl__)) mkdir ( const char *_path, mode_t __mode ); int __attribute__((__cdecl__)) mkfifo ( const char *__path, mode_t __mode ); int __attribute__((__cdecl__)) stat ( const char *__path, struct stat *__sbuf ); mode_t __attribute__((__cdecl__)) umask ( mode_t __mask ); int __attribute__((__cdecl__)) lstat ( const char *__path, struct stat *__buf ); int __attribute__((__cdecl__)) mknod ( const char *__path, mode_t __mode, dev_t __dev ); # 6 "conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:127) TESTING: checkSysWait from config.headers(python/BuildSystem/config/headers.py:127) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:149) TESTING: checkTime from config.headers(python/BuildSystem/config/headers.py:149) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_... ... d, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *evp, timer_t *timerid); int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *value, struct itimerspec *ovalue); int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 9 "/usr/inc... ... itimerval { struct timeval it_interval; struct timeval it_value; }; # 73 "/usr/include/sys/time.h" 3 4 int __attribute__((__cdecl__)) gettimeofday (struct timeval *__p, struct timezone *__z); int __attribute__((__cdecl__)) settimeofday (const struct timeval *, const struct timezone *); int __attribute__((__cdecl__)) utimes (const char *__path, const struct timeval *__tvp); int __attribute__((__cdecl__)) getitimer (int __which, struct itimerval *__value); int __attribute__((__cdecl__)) setitimer (int __which, const struct itimerval *__value, struct itimerval *__ovalue); # 4 "conftest.c" 2 Defined "HAVE_SYS_TIME_H" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:17: dos.h: No such file or directory ret = 256 error message = {conftest.c:3:17: dos.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 14 "/usr/include/endian.h" 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 15 "/usr/include/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 14 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/sys/fcntl.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/s... ... ); int __attribute__((__cdecl__)) mkfifo ( const char *__path, mode_t __mode ); int __attribute__((__cdecl__)) stat ( const char *__path, struct stat *__sbuf ); mode_t __attribute__((__cdecl__)) umask ( mode_t __mask ); int __attribute__((__cdecl__)) lstat ( const char *__path, struct stat *__buf ); int __attribute__((__cdecl__)) mknod ( const char *__path, mode_t __mode, dev_t __dev ); # 165 "/usr/include/sys/fcntl.h" 2 3 4 extern int open (const char *, int, ...); extern int creat (const char *, mode_t); extern int fcntl (int, int, ...); # 15 "/usr/include/fcntl.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/float.h" 1 3 4 # 4 "conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/io.h" 1 3 4 # 21 "/usr/include/io.h" 3 4 extern long get_osfhandle(int); extern int setmode (int __fd, int __mode); int access(const char *__path, int __amode); # 4 "conftest.c" 2 Defined "HAVE_IO_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 1 3 4 # 11 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 ... ... 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 14 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 7 "/usr/inclu... ... nt fsmblks; int uordblks; int fordblks; int keepcost; }; extern void * malloc (size_t); extern void free (void *); extern void * realloc (void *, size_t); extern void * calloc (size_t, size_t); extern void * memalign (size_t, size_t); extern struct mallinfo mallinfo (void); extern void malloc_stats (void); extern int mallopt (int, int); extern size_t malloc_usable_size (void *); # 112 "/usr/include/malloc.h" 3 4 extern void * valloc (size_t); extern void * pvalloc (size_t); extern int malloc_trim (size_t); # 138 "/usr/include/malloc.h" 3 4 extern void mstats (char *); # 4 "conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 42 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/confi... ... attr_t {char __dummy;} *pthread_rwlockattr_t; # 373 "/usr/include/sys/types.h" 2 3 4 # 43 "/usr/include/pwd.h" 2 3 4 struct passwd { char *pw_name; char *pw_passwd; uid_t pw_uid; gid_t pw_gid; char *pw_comment; char *pw_gecos; char *pw_dir; char *pw_shell; }; struct passwd *getpwuid (uid_t); struct passwd *getpwnam (const char *); int getpwnam_r (const char *, struct passwd *, char *, size_t , struct passwd **); int getpwuid_r (uid_t, struct passwd *, char *, size_t, struct passwd **); struct passwd *getpwent (void); void setpwent (void); void endpwent (void); # 4 "conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 12 "/usr/include/search.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 13 "/usr/include/search.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config... ... *); void *tdelete (const void * __restrict, void ** __restrict, int (*) (const void *, const void *)); void tdestroy (void *, void (*)(void *)); void *tfind (const void *, void **, int (*) (const void *, const void *)); void *tsearch (const void *, void **, int (*) (const void *, const void *)); void twalk (const void *, void (*) (const void *, VISIT, int)); void *lfind (const void *, const void *, size_t *, size_t, int (*) (const void *, const void *)); void *lsearch (const void *, void *, size_t *, size_t, int (*) (const void *, const void *)); # 4 "conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/s... ... nt __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 5 "/usr/include/strings.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stropts.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:21: stropts.h: No such file or directory ret = 256 error message = {conftest.c:3:21: stropts.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 1 "/usr/include/sys/unistd.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/... ... ibute__((__cdecl__)) setdtablesize (int); useconds_t __attribute__((__cdecl__)) ualarm (useconds_t __useconds, useconds_t __interval); unsigned __attribute__((__cdecl__)) usleep (unsigned int __useconds); int __attribute__((__cdecl__)) gethostname (char *__name, size_t __len); char * __attribute__((__cdecl__)) mktemp (char *); void __attribute__((__cdecl__)) sync (void); int __attribute__((__cdecl__)) readlink (const char *__path, char *__buf, int __buflen); int __attribute__((__cdecl__)) symlink (const char *__name1, const char *__name2); # 5 "/usr/include/unistd.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/machine/endian.h" 1 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 4 "/usr/include/machine/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 12 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/... ... -cygwin/3.4.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 14 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 15 "/usr/include/sys/param.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 4 # 16 "/usr/include/sys/procfs.h" 3 4 # 1 "/usr/include/cygwin/core_dump.h" 1 3 4 # 16 "/usr/include/cygwin/core_dump.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 1 3 4 # 16 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 3 # 47 "/usr/lib/gcc/i686-pc-cygwin/3.4.... ... ead_info { DWORD tid; BOOL is_active_thread; CONTEXT thread_context; } __attribute__ ((packed)) ; struct win32_core_module_info { void* base_address; int module_name_size; char module_name[1]; } __attribute__ ((packed)) ; struct win32_pstatus { unsigned long data_type; union { struct win32_core_process_info process_info; struct win32_core_thread_info thread_info; struct win32_core_module_info module_info; } data ; } __attribute__ ((packed)) ; typedef struct win32_pstatus win32_pstatus_t ; # 17 "/usr/include/sys/procfs.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 14 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/... ... im_t rlim_max; }; struct rusage { struct timeval ru_utime; struct timeval ru_stime; long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; int getrlimit (int __resource, struct rlimit *__rlp); int setrlimit (int __resource, const struct rlimit *__rlp); int getrusage (int __who, struct rusage *__rusage); int getpriority (int which, id_t who); int setpriority (int which, id_t who, int value); # 4 "conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/in... ... "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 9 "/usr/include/sys/times.h" 2 3 4 typedef unsigned long clock_t; struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; clock_t __attribute__((__cdecl__)) times (struct tms *); # 4 "conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 18 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[20]; char nodename[20]; char release[20]; char version[20]; char machine[20]; }; int uname (struct utsname *); # 4 "conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... y (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 183 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 4 "conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 14 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 15 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # ... ... int sendmsg(int s, const struct msghdr *msg, int flags); int sendto (int, const void *, int __len, int __flags, const struct sockaddr *__to, int __tolen); int setsockopt (int __s, int __level, int __optname, const void *optval, int __optlen); int getsockopt (int __s, int __level, int __optname, void *__optval, int *__optlen); int shutdown (int, int); int socket (int __family, int __type, int __protocol); int socketpair (int __domain, int __type, int __protocol, int *__socket_vec); struct servent *getservbyname (const char *__name, const char *__proto); # 4 "conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 14 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cy... ... /usr/include/sys/wait.h" 2 3 4 # 41 "/usr/include/sys/wait.h" 3 4 pid_t wait (int *); pid_t waitpid (pid_t, int *, int); pid_t wait3 (int *__status, int __options, struct rusage *__rusage); pid_t wait4 (pid_t __pid, int *__status, int __options, struct rusage *__rusage); union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 4 "conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 14 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/cygwin/in.h" 1 3 4 # 21 "/usr/include/cygwin/in.h" 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 18 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef long int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uin... ... unsigned short int __ntohs(unsigned short int); extern __inline__ unsigned long int __constant_ntohl(unsigned long int); extern __inline__ unsigned short int __constant_ntohs(unsigned short int); extern __inline__ unsigned long int __ntohl(unsigned long int x) { __asm__("xchgb %b0,%h0\n\t" "rorl $16,%0\n\t" "xchgb %b0,%h0" :"=q" (x) : "0" (x)); return x; } extern __inline__ unsigned short int __ntohs(unsigned short int x) { __asm__("xchgb %b0,%h0" : "=q" (x) : "0" (x)); return x; } # 179 "/usr/include/cygwin/in.h" 2 3 4 # 15 "/usr/include/netinet/in.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 73 "/usr/include/netdb.h" 3 4 struct hostent { const char *h_name; char **h_aliases; short h_addrtype; short h_length; char **h_addr_list; }; struct netent { char *n_name; char **n_aliases; short n_addrtype; unsigned long n_net; }; struct servent { char *s_name; char **s_aliases; short s_port; char *s_proto; }; struct protoent { char *p_name; char **p_aliases; short p_proto; }; struct rpcent { c... ... tent *getnetent (void); struct protoent *getprotobyname (const char *); struct protoent *getprotobynumber (int); struct protoent *getprotoent (void); struct servent *getservbyname (const char *, const char *); struct servent *getservbyport (int, const char *); struct servent *getservent (void); struct rpcent *getrpcent (void); struct rpcent *getrpcbyname (const char *); struct rpcent *getrpcbynumber (int); const char *hstrerror (int); void herror (const char *); void sethostent (int); void setnetent (int); void setprotoent (int); void setservent (int); void setrpcent (int); # 4 "conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: Direct.h: No such file or directory ret = 256 error message = {conftest.c:3:20: Direct.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_... ... d, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *evp, timer_t *timerid); int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *value, struct itimerspec *ovalue); int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 1 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 4 # 13 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/winsock2.h" 1 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/winsock2.h" 3 4 # 18 "/usr/lib/gcc/i68... ... i_canonname; struct sockaddr *ai_addr; struct addrinfo *ai_next; }; # 322 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 struct sockaddr_in6_old { short sin6_family; u_short sin6_port; u_long sin6_flowinfo; struct in6_addr sin6_addr; }; typedef union sockaddr_gen{ struct sockaddr Address; struct sockaddr_in AddressIn; struct sockaddr_in6_old AddressIn6; } sockaddr_gen; typedef struct _INTERFACE_INFO { u_long iiFlags; sockaddr_gen iiAddress; sockaddr_gen iiBroadcastAddress; sockaddr_gen iiNetmask; } INTERFACE_INFO, *LPINTERFACE_INFO; # 4 "conftest.c" 2 Defined "HAVE_WS2TCPIP_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr... ... thread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 373 "/usr/include/sys/types.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/WindowsX.h" 1 3 4 # 5 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/WindowsX.h" 3 # 4 "conftest.c" 2 Defined "HAVE_WINDOWSX_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:17: dos.h: No such file or directory ret = 256 error message = {conftest.c:3:17: dos.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 14 "/usr/include/endian.h" 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 15 "/usr/include/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 14 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/sys/fcntl.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/s... ... ); int __attribute__((__cdecl__)) mkfifo ( const char *__path, mode_t __mode ); int __attribute__((__cdecl__)) stat ( const char *__path, struct stat *__sbuf ); mode_t __attribute__((__cdecl__)) umask ( mode_t __mask ); int __attribute__((__cdecl__)) lstat ( const char *__path, struct stat *__buf ); int __attribute__((__cdecl__)) mknod ( const char *__path, mode_t __mode, dev_t __dev ); # 165 "/usr/include/sys/fcntl.h" 2 3 4 extern int open (const char *, int, ...); extern int creat (const char *, mode_t); extern int fcntl (int, int, ...); # 15 "/usr/include/fcntl.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/float.h" 1 3 4 # 4 "conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/io.h" 1 3 4 # 21 "/usr/include/io.h" 3 4 extern long get_osfhandle(int); extern int setmode (int __fd, int __mode); int access(const char *__path, int __amode); # 4 "conftest.c" 2 Defined "HAVE_IO_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 1 3 4 # 11 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 ... ... 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 14 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 7 "/usr/inclu... ... nt fsmblks; int uordblks; int fordblks; int keepcost; }; extern void * malloc (size_t); extern void free (void *); extern void * realloc (void *, size_t); extern void * calloc (size_t, size_t); extern void * memalign (size_t, size_t); extern struct mallinfo mallinfo (void); extern void malloc_stats (void); extern int mallopt (int, int); extern size_t malloc_usable_size (void *); # 112 "/usr/include/malloc.h" 3 4 extern void * valloc (size_t); extern void * pvalloc (size_t); extern int malloc_trim (size_t); # 138 "/usr/include/malloc.h" 3 4 extern void mstats (char *); # 4 "conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 42 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/confi... ... attr_t {char __dummy;} *pthread_rwlockattr_t; # 373 "/usr/include/sys/types.h" 2 3 4 # 43 "/usr/include/pwd.h" 2 3 4 struct passwd { char *pw_name; char *pw_passwd; uid_t pw_uid; gid_t pw_gid; char *pw_comment; char *pw_gecos; char *pw_dir; char *pw_shell; }; struct passwd *getpwuid (uid_t); struct passwd *getpwnam (const char *); int getpwnam_r (const char *, struct passwd *, char *, size_t , struct passwd **); int getpwuid_r (uid_t, struct passwd *, char *, size_t, struct passwd **); struct passwd *getpwent (void); void setpwent (void); void endpwent (void); # 4 "conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 12 "/usr/include/search.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 13 "/usr/include/search.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config... ... *); void *tdelete (const void * __restrict, void ** __restrict, int (*) (const void *, const void *)); void tdestroy (void *, void (*)(void *)); void *tfind (const void *, void **, int (*) (const void *, const void *)); void *tsearch (const void *, void **, int (*) (const void *, const void *)); void twalk (const void *, void (*) (const void *, VISIT, int)); void *lfind (const void *, const void *, size_t *, size_t, int (*) (const void *, const void *)); void *lsearch (const void *, void *, size_t *, size_t, int (*) (const void *, const void *)); # 4 "conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/s... ... nt __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 5 "/usr/include/strings.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stropts.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:21: stropts.h: No such file or directory ret = 256 error message = {conftest.c:3:21: stropts.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 1 "/usr/include/sys/unistd.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/... ... ibute__((__cdecl__)) setdtablesize (int); useconds_t __attribute__((__cdecl__)) ualarm (useconds_t __useconds, useconds_t __interval); unsigned __attribute__((__cdecl__)) usleep (unsigned int __useconds); int __attribute__((__cdecl__)) gethostname (char *__name, size_t __len); char * __attribute__((__cdecl__)) mktemp (char *); void __attribute__((__cdecl__)) sync (void); int __attribute__((__cdecl__)) readlink (const char *__path, char *__buf, int __buflen); int __attribute__((__cdecl__)) symlink (const char *__name1, const char *__name2); # 5 "/usr/include/unistd.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/machine/endian.h" 1 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 4 "/usr/include/machine/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 12 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/... ... -cygwin/3.4.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 14 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 15 "/usr/include/sys/param.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 4 # 16 "/usr/include/sys/procfs.h" 3 4 # 1 "/usr/include/cygwin/core_dump.h" 1 3 4 # 16 "/usr/include/cygwin/core_dump.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 1 3 4 # 16 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 3 # 47 "/usr/lib/gcc/i686-pc-cygwin/3.4.... ... ead_info { DWORD tid; BOOL is_active_thread; CONTEXT thread_context; } __attribute__ ((packed)) ; struct win32_core_module_info { void* base_address; int module_name_size; char module_name[1]; } __attribute__ ((packed)) ; struct win32_pstatus { unsigned long data_type; union { struct win32_core_process_info process_info; struct win32_core_thread_info thread_info; struct win32_core_module_info module_info; } data ; } __attribute__ ((packed)) ; typedef struct win32_pstatus win32_pstatus_t ; # 17 "/usr/include/sys/procfs.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 14 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/... ... im_t rlim_max; }; struct rusage { struct timeval ru_utime; struct timeval ru_stime; long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; int getrlimit (int __resource, struct rlimit *__rlp); int setrlimit (int __resource, const struct rlimit *__rlp); int getrusage (int __who, struct rusage *__rusage); int getpriority (int which, id_t who); int setpriority (int which, id_t who, int value); # 4 "conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/in... ... "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 9 "/usr/include/sys/times.h" 2 3 4 typedef unsigned long clock_t; struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; clock_t __attribute__((__cdecl__)) times (struct tms *); # 4 "conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 18 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[20]; char nodename[20]; char release[20]; char version[20]; char machine[20]; }; int uname (struct utsname *); # 4 "conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... y (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 183 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 4 "conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 14 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 15 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # ... ... int sendmsg(int s, const struct msghdr *msg, int flags); int sendto (int, const void *, int __len, int __flags, const struct sockaddr *__to, int __tolen); int setsockopt (int __s, int __level, int __optname, const void *optval, int __optlen); int getsockopt (int __s, int __level, int __optname, void *__optval, int *__optlen); int shutdown (int, int); int socket (int __family, int __type, int __protocol); int socketpair (int __domain, int __type, int __protocol, int *__socket_vec); struct servent *getservbyname (const char *__name, const char *__proto); # 4 "conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 14 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cy... ... /usr/include/sys/wait.h" 2 3 4 # 41 "/usr/include/sys/wait.h" 3 4 pid_t wait (int *); pid_t waitpid (pid_t, int *, int); pid_t wait3 (int *__status, int __options, struct rusage *__rusage); pid_t wait4 (pid_t __pid, int *__status, int __options, struct rusage *__rusage); union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 4 "conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 14 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/cygwin/in.h" 1 3 4 # 21 "/usr/include/cygwin/in.h" 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 18 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef long int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uin... ... unsigned short int __ntohs(unsigned short int); extern __inline__ unsigned long int __constant_ntohl(unsigned long int); extern __inline__ unsigned short int __constant_ntohs(unsigned short int); extern __inline__ unsigned long int __ntohl(unsigned long int x) { __asm__("xchgb %b0,%h0\n\t" "rorl $16,%0\n\t" "xchgb %b0,%h0" :"=q" (x) : "0" (x)); return x; } extern __inline__ unsigned short int __ntohs(unsigned short int x) { __asm__("xchgb %b0,%h0" : "=q" (x) : "0" (x)); return x; } # 179 "/usr/include/cygwin/in.h" 2 3 4 # 15 "/usr/include/netinet/in.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 73 "/usr/include/netdb.h" 3 4 struct hostent { const char *h_name; char **h_aliases; short h_addrtype; short h_length; char **h_addr_list; }; struct netent { char *n_name; char **n_aliases; short n_addrtype; unsigned long n_net; }; struct servent { char *s_name; char **s_aliases; short s_port; char *s_proto; }; struct protoent { char *p_name; char **p_aliases; short p_proto; }; struct rpcent { c... ... tent *getnetent (void); struct protoent *getprotobyname (const char *); struct protoent *getprotobynumber (int); struct protoent *getprotoent (void); struct servent *getservbyname (const char *, const char *); struct servent *getservbyport (int, const char *); struct servent *getservent (void); struct rpcent *getrpcent (void); struct rpcent *getrpcbyname (const char *); struct rpcent *getrpcbynumber (int); const char *hstrerror (int); void herror (const char *); void sethostent (int); void setnetent (int); void setprotoent (int); void setservent (int); void setrpcent (int); # 4 "conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: Direct.h: No such file or directory ret = 256 error message = {conftest.c:3:20: Direct.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_... ... d, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *evp, timer_t *timerid); int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *value, struct itimerspec *ovalue); int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 1 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 4 # 13 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/winsock2.h" 1 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/winsock2.h" 3 4 # 18 "/usr/lib/gcc/i68... ... i_canonname; struct sockaddr *ai_addr; struct addrinfo *ai_next; }; # 322 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 struct sockaddr_in6_old { short sin6_family; u_short sin6_port; u_long sin6_flowinfo; struct in6_addr sin6_addr; }; typedef union sockaddr_gen{ struct sockaddr Address; struct sockaddr_in AddressIn; struct sockaddr_in6_old AddressIn6; } sockaddr_gen; typedef struct _INTERFACE_INFO { u_long iiFlags; sockaddr_gen iiAddress; sockaddr_gen iiBroadcastAddress; sockaddr_gen iiNetmask; } INTERFACE_INFO, *LPINTERFACE_INFO; # 4 "conftest.c" 2 Defined "HAVE_WS2TCPIP_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr... ... thread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 373 "/usr/include/sys/types.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/WindowsX.h" 1 3 4 # 5 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/WindowsX.h" 3 # 4 "conftest.c" 2 Defined "HAVE_WINDOWSX_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:157) TESTING: checkRecursiveMacros from config.headers(python/BuildSystem/config/headers.py:157) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: ================================================================================ TEST checkMemcmp from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:79) TESTING: checkMemcmp from config.functions(python/BuildSystem/config/functions.py:79) Check for 8-bit clean memcmp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: ================================================================================ TEST checkSysinfo from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:102) TESTING: checkSysinfo from config.functions(python/BuildSystem/config/functions.py:102) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for function sysinfo sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_sysinfo' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_sysinfo' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sysinfo(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sysinfo) || defined (__stub___sysinfo) choke me #else sysinfo(); #endif ; return 0; } ================================================================================ TEST checkVPrintf from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(python/BuildSystem/config/functions.py:125) Checking for function vprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'vprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char vprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_vprintf) || defined (__stub___vprintf) choke me #else vprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_VPRINTF" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:7: warning: 'Argp' might be used uninitialized in this function } Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } ================================================================================ TEST checkSignalHandlerType from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:132) TESTING: checkSignalHandlerType from config.functions(python/BuildSystem/config/functions.py:132) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc sh: Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:142) TESTING: checkFreeReturnType from config.functions(python/BuildSystem/config/functions.py:142) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:6: error: void value not ignored as it ought to be } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_sbreak' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_sbreak' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_task_info' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_task_info' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE__ACCESS" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE__GETCWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'memmove' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_sigset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_sigset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sigset) || defined (__stub___sigset) choke me #else sigset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE__SLEEP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'snprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_snprintf) || defined (__stub___snprintf) choke me #else snprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE__SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `__fullpath' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `__fullpath' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE__LSEEK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_stricmp' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_stricmp' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'bzero' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_bzero) || defined (__stub___bzero) choke me #else bzero(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `__intel_fast_memcpy' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `__intel_fast_memcpy' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `__intel_fast_memset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `__intel_fast_memset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE__ACCESS" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE__GETCWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'memmove' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_sigset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_sigset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sigset) || defined (__stub___sigset) choke me #else sigset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE__SLEEP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'snprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_snprintf) || defined (__stub___snprintf) choke me #else snprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE__SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `__fullpath' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `__fullpath' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE__LSEEK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_stricmp' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_stricmp' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'bzero' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_bzero) || defined (__stub___bzero) choke me #else bzero(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `__intel_fast_memcpy' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `__intel_fast_memcpy' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `__intel_fast_memset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `__intel_fast_memset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_sbreak' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_sbreak' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_task_info' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_task_info' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(python/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(python/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: sigfpe.h: No such file or directory ret = 256 error message = {conftest.c:3:20: sigfpe.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:19: fpxcp.h: No such file or directory ret = 256 error message = {conftest.c:3:19: fpxcp.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:27: floatingpoint.h: No such file or directory ret = 256 error message = {conftest.c:3:27: floatingpoint.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/fortranCommandLine.py:26) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(python/PETSc/utilities/fortranCommandLine.py:26) Check for the mechanism to retrieve command line arguments in Fortran Pushing language C Checking for function _gfortran_iargc sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `__gfortran_iargc' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `__gfortran_iargc' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _gfortran_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) choke me #else _gfortran_iargc(); #endif ; return 0; } Checking for function ipxfargc_ sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_ipxfargc_' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_ipxfargc_' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char ipxfargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) choke me #else ipxfargc_(); #endif ; return 0; } Checking for function f90_unix_MP_iargc sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_f90_unix_MP_iargc' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_f90_unix_MP_iargc' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char f90_unix_MP_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) choke me #else f90_unix_MP_iargc(); #endif ; return 0; } Checking for function PXFGETARG sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } Checking for function GETARG@16 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c:10: error: stray '@' in program conftest.c:10: error: parse error before numeric constant conftest.c:17:27: missing ')' after "defined" conftest.c:17:28: missing binary operator before token "16" conftest.c: In function `main': conftest.c:20: error: stray '@' in program conftest.c:20: error: `GETARG' undeclared (first use in this function) conftest.c:20: error: (Each undeclared identifier is reported only once conftest.c:20: error: for each function it appears in.) conftest.c:20: error: parse error before numeric constant } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char GETARG@16(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG@16(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) choke me #else GETARG@16(); #endif ; return 0; } Compile failed inside link Popping language C ================================================================================ TEST checkSizeTypes from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:42) TESTING: checkSizeTypes from config.types(python/BuildSystem/config/types.py:42) Checks for types associated with sizes, such as size_t. Checking for type: size_t sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:47) TESTING: checkFileTypes from config.types(python/BuildSystem/config/types.py:47) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkPID from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:53) TESTING: checkPID from config.types(python/BuildSystem/config/types.py:53) Checks for pid_t, and defines it if necessary Checking for type: pid_t sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:57) TESTING: checkUID from config.types(python/BuildSystem/config/types.py:57) Checks for uid_t and gid_t, and defines them if necessary sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 sys/types.h ================================================================================ TEST checkSignal from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:64) TESTING: checkSignal from config.types(python/BuildSystem/config/types.py:64) Checks the return type of signal() and defines RETSIGTYPE to that type name sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkComplex from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:85) TESTING: checkComplex from config.types(python/BuildSystem/config/types.py:85) Check for complex numbers in namespace std, and if --enable-complex is given, defines PETSC_USE_COMPLEX if they are present Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Defined "HAVE_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:110) TESTING: checkFortranKind from config.types(python/BuildSystem/config/types.py:110) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.F: In program `main': conftest.F:3: integer(kind=selected_int_kind(10)) i ^ Invalid declaration of or reference to symbol `selected_int_kind' at (^) [initially seen at (^)] conftest.F:4: real(kind=selected_real_kind(10)) d ^ Invalid declaration of or reference to symbol `selected_real_kind' at (^) [initially seen at (^)] In file included from conftest.F:0: conftest.F:4: warning: unused variable 'd' conftest.F:3: warning: unused variable 'i' } Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:122) TESTING: checkFortranDReal from config.types(python/BuildSystem/config/types.py:122) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O conftest.o sh: Popping language FC ================================================================================ TEST checkConst from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:130) TESTING: checkConst from config.types(python/BuildSystem/config/types.py:130) Checks for working const, and if not found defines it to empty string sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:34: warning: declaration of 'x' shadows a previous local conftest.c:7: warning: shadowed declaration is here conftest.c:40: warning: declaration of 'p' shadows a previous local conftest.c:10: warning: shadowed declaration is here conftest.c:46: warning: 'b' might be used uninitialized in this function conftest.c:27: warning: 't' might be used uninitialized in this function } Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:186) TESTING: checkEndian from config.types(python/BuildSystem/config/types.py:186) If the machine is big endian, defines WORDS_BIGENDIAN sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:9: error: `not' undeclared (first use in this function) conftest.c:9: error: (Each undeclared identifier is reported only once conftest.c:9: error: for each function it appears in.) conftest.c:9: error: parse error before "big" } Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_VOID_P" to "4" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_LONG" to "4" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:281) TESTING: checkBitsPerByte from config.types(python/BuildSystem/config/types.py:281) Determine the nubmer of bits per byte and define BITS_PER_BYTE sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsocket -lnsl Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsocket -lnsl sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsocket -lnsl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lfpe Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lfpe sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lfpe Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsocket -lnsl Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsocket -lnsl sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsocket -lnsl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lfpe Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lfpe sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lfpe Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST checkMath from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:176) TESTING: checkMath from config.libraries(python/BuildSystem/config/libraries.py:176) Check for sin() in libm, the math library Checking for functions ['sin', 'floor', 'log10', 'sqrt'] in library [''] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:7: warning: 'x' might be used uninitialized in this function } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double log10(double); int main() { double x; log10(x); ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:7: warning: 'x' might be used uninitialized in this function } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double pow(double, double); int main() { double x; pow(x, x); ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:192) TESTING: checkMathErf from config.libraries(python/BuildSystem/config/libraries.py:192) Check for erf() in libm, the math library Checking for functions ['erf'] in library [] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkDynamic from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:201) TESTING: checkDynamic from config.libraries(python/BuildSystem/config/libraries.py:201) Check for the header and libraries necessary for dynamic library manipulation Checking for functions ['dlopen'] in library ['dl'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -ldl Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -ldl sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -ldl collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -ldl collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); int main() { dlopen() ; return 0; } Popping language C Checking for header: dlfcn.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 19 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *, int); extern void *dlsym (void *, const char *); extern int dlclose (void *); extern char *dlerror (void); extern void dlfork (int); # 4 "conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST configureTimers from PETSc.utilities.timer(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(python/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_GETCLOCK PETSC_USE_DCLOCK PETSC_USE_NT_TIME. Checking for functions ['MPI_CRAY_barrier'] in library [''] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_MPI_CRAY_barrier' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_MPI_CRAY_barrier' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); int main() { MPI_CRAY_barrier() ; return 0; } Popping language C Cray-MPI test failure ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:35) TESTING: configureMissingDefines from PETSc.utilities.missing(python/PETSc/utilities/missing.py:35) Checks for limits sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:45) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(python/PETSc/utilities/missing.py:45) Checks if u_short is undefined sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `foo' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:51) TESTING: configureMissingFunctions from PETSc.utilities.missing(python/PETSc/utilities/missing.py:51) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:71) TESTING: configureMissingSignals from PETSc.utilities.missing(python/PETSc/utilities/missing.py:71) Check for missing signals, and define MISSING_ if necessary sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: ================================================================================ TEST configureMissingPrototypes from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:88) TESTING: configureMissingPrototypes from PETSc.utilities.missing(python/PETSc/utilities/missing.py:88) sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:14: warning: unused variable `err' } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.cc sh: Possible ERROR while running compiler: error message = {conftest.cc: In function `int main()': conftest.cc:14: warning: unused variable 'err' } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Popping language Cxx ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:110) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(python/PETSc/utilities/missing.py:110) ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/libraryOptions.py:46) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(python/PETSc/utilities/libraryOptions.py:46) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Checking for functions ['bgl_perfctr_void'] in library [''] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_bgl_perfctr_void' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_bgl_perfctr_void' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); int main() { bgl_perfctr_void() ; return 0; } Popping language C BGL/IBM test failure Defined "USE_32BIT_INT" to "1" ================================================================================ TEST configureISColorValueType from PETSc.utilities.libraryOptions(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/libraryOptions.py:99) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(python/PETSc/utilities/libraryOptions.py:99) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_CHAR" Defined "IS_COLORING_MAX" to "255" Defined "IS_COLOR_VALUE_TYPE" to "char" ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Triangle(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.Triangle(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.TetGen(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.TetGen(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PARTY(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Matlab(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need Lgrind ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Chaco(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ccafe(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.ccafe(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need c2html ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Boost(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.Boost(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need Sowing ================================================================================ TEST configureLibrary from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:381) TESTING: configureLibrary from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:381) ================================================================================ Checking for a functional BLAS and LAPACK in IRIX Mathematics library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libcomplib.sgimath.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libcomplib.sgimath.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Another IRIX Mathematics library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libscs.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lscs collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lscs collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libscs.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lscs collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lscs collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in IBM ESSL Mathematics library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libessl.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lessl collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lessl collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libessl.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lessl collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lessl collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default compiler locations ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in HPUX ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libveclib.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libveclib.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default compiler locations /usr/local/lib ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/usr/local/lib/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/usr/local/lib/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default Atlas location /usr/local/lib ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/usr/local/lib/libcblas.a', '/usr/local/lib/libf77blas.a', '/usr/local/lib/libatlas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/usr/local/lib/libcblas.a', '/usr/local/lib/libf77blas.a', '/usr/local/lib/libatlas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default Atlas location /usr/local/lib ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/usr/local/lib/libf77blas.a', '/usr/local/lib/libatlas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lf77blas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lf77blas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/usr/local/lib/libf77blas.a', '/usr/local/lib/libatlas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lf77blas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lf77blas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default compiler locations with G77 ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['liblapack.a', 'libblas.a', 'libg2c.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -llapack collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -llapack collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['liblapack.a', 'libblas.a', 'libg2c.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -llapack collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -llapack collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in MacOSX BLAS/LAPACK library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/System/Library/Frameworks/vecLib.framework/vecLib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /System/Library/Frameworks/vecLib.framework/vecLib: No such file or directory output: ret = 256 error message = {gcc: /System/Library/Frameworks/vecLib.framework/vecLib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/System/Library/Frameworks/vecLib.framework/vecLib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /System/Library/Frameworks/vecLib.framework/vecLib: No such file or directory output: ret = 256 error message = {gcc: /System/Library/Frameworks/vecLib.framework/vecLib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Sun sunperf BLAS/LAPACK library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libsunperf.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libsunperf.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Sun sunperf BLAS/LAPACK library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libsunperf.a', 'libF77.a', 'libM77.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libsunperf.a', 'libF77.a', 'libM77.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Sun sunperf BLAS/LAPACK library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libsunperf.a', 'libfui.a', 'libfsu.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libsunperf.a', 'libfui.a', 'libfsu.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL stdcall library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL stdcall library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL stdcall library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL stdcall library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL stdcall library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in PETSc location 1 ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/home/feap/Library/blaslapack/lib/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/home/feap/Library/blaslapack/lib/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in PETSc location 2 ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in PETSc location 3 ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-opt -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Downloading fblaslapack Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -V Executing: /home/feap/mpich2-install/bin/mpif77 -V sh: Popping language FC Found fblaslapack, do not need to download Pushing language FC Popping language FC Pushing language FC Popping language FC ================================================================================= Compiling FBLASLAPACK; this may take several minutes ================================================================================= sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;make -f tmpmakefile cleanblaslapck cleanlib; make -f tmpmakefile Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;make -f tmpmakefile cleanblaslapck cleanlib; make -f tmpmakefile sh: /usr/bin/rm -f */*.o /usr/bin/rm -f ./*.a ./*.lib make[1]: Entering directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/blas1' /home/feap/mpich2-install/bin/mpif77 -c -Wall -O dasum.f daxpy.f dcabs1.f dcopy.f ddot.f dmach.f dnrm2.f drot.f drotg.f dscal.f dswap.f dzasum.f dznrm2.f idamax.f izamax.f zaxpy.f zcopy.f zdotc.f zdotu.f zdrot.f zdscal.f zmach.f zrotg.f zscal.f zswap.f /usr/bin/ar cr ../libfblas.a dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dmach.o dnrm2.o drot.o drotg.o dscal.o dswap.o dzasum.o dznrm2.o idamax.o izamax.o zaxpy.o zcopy.o zdotc.o zdotu.o zdrot.o zdsc... ... sy2.o zggesx.o zhegvx.o zlaqps.o zlatrz.o ztgsyl.o /usr/bin/rm -f zgelsd.o zggev.o zhpgvd.o zlar1v.o zptts2.o ztzrzf.o zgelsy.o zggevx.o zhpgvx.o zlarcm.o zstegr.o zunmr3.o zgeqp3.o zgtts2.o zlacp2.o zlarrv.o ztgex2.o zunmrz.o zgesc2.o zhbgvd.o zlals0.o zlarzb.o ztgexc.o zgesdd.o zhbgvx.o zlalsa.o zlarz.o ztgsen.o zgetc2.o zheevr.o zlalsd.o zlarzt.o ztgsna.o zgges.o zhegvd.o zlaqp2.o zlatdf.o ztgsy2.o zggesx.o zhegvx.o zlaqps.o zlatrz.o ztgsyl.o make[1]: Leaving directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/lapack-extra4' sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;mv -f libfblas.a libflapack.a cygwin-c-real-opt Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;mv -f libfblas.a libflapack.a cygwin-c-real-opt sh: sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;cp -f tmpmakefile cygwin-c-real-opt Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;cp -f tmpmakefile cygwin-c-real-opt sh: ================================================================================ Checking for a functional BLAS and LAPACK in Downloaded BLAS/LAPACK library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFBLAS" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C ================================================================================ TEST checkESSL from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:431) TESTING: checkESSL from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:431) Check for the IBM ESSL library Checking for functions ['iessl'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_iessl' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_iessl' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); int main() { iessl() ; return 0; } Popping language C ================================================================================ TEST checkMissing from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:437) TESTING: checkMissing from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:437) Check for missing LAPACK routines Checking for functions ['dgesvd'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dgeev'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dgetrf'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dpotrf'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dpotrs'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.UMFPACK(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.UMFPACK(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.babel(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.babel(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureLibrary from PETSc.packages.X11(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/X11.py:91) TESTING: configureLibrary from PETSc.packages.X11(python/PETSc/packages/X11.py:91) Checks for X windows, sets PETSC_HAVE_X11 if found, and defines X_CFLAGS, X_PRE_LIBS, X_LIBS, and X_EXTRA_LIBS sh: xmkmf Executing: xmkmf sh: imake -DUseInstalled -I/usr/X11R6/lib/X11/config sh: /usr/bin/make acfindx Executing: /usr/bin/make acfindx sh: X_INCLUDE_ROOT = /usr/X11R6/include X_USR_LIB_DIR = /usr/X11R6/lib X_LIB_DIR = /usr/X11R6/lib/X11 Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:5: warning: implicit declaration of function `XSetForeground' } Source: #include "confdefs.h" #include "conffix.h" int main() { XSetForeground(); ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/usr/X11R6/lib -lX11 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -L/usr/X11R6/lib -lX11 sh: Popping language C Found X11 includes and libraries Substituting "X_CFLAGS" with "-I/usr/X11R6/include" Substituting "X_LIBS" with "-L/usr/X11R6/lib -lX11" Substituting "X_PRE_LIBS" with "" Substituting "X_EXTRA_LIBS" with "" Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:479) TESTING: configureLibrary from PETSc.packages.MPI(python/PETSc/packages/MPI.py:479) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in User specified root directory MPI: [] ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['MPI_Init', 'MPI_Comm_create'] in library [] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Popping language C Checking for headers User specified root directory MPI: ['/home/feap/mpich2-install/include', '/home/feap/mpich2-install/include'] ================================================================================ TEST checkInclude from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:46) TESTING: checkInclude from config.headers(python/BuildSystem/config/headers.py:46) Checks if a particular include file can be found along particular include paths sh: /home/feap/mpich2-install/bin/mpicc -E -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/home/feap/mpich2-install/include/mpi.h" 1 # 24 "/home/feap/mpich2-install/include/mpi.h" typedef int MPI_Datatype; # 95 "/home/feap/mpich2-install/include/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; # 115 "/home/feap/mpich2-install/include/mpi.h" typedef struct ADIOI_FileD *MPI_File; typedef int MPI_Op; # 187 "/home/feap/mpich2-install/include/mpi.h" typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2 } MPIR_Topo... ... st *, int *, MPI_Status *); int PMPI_Wait(MPI_Request *, MPI_Status *); int PMPIO_Testall(int, MPI_Request *, int *, MPI_Status *); int PMPIO_Waitall(int, MPI_Request *, MPI_Status *); int PMPIO_Testany(int, MPI_Request *, int *, int *, MPI_Status *); int PMPIO_Waitany(int, MPI_Request *, int *, MPI_Status *); int PMPIO_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *); int PMPIO_Testsome(int, MPI_Request *, int *, int *, MPI_Status *); MPI_Fint PMPIO_Request_c2f(MPI_Request); MPI_Request PMPIO_Request_f2c(MPI_Fint); # 1105 "/home/feap/mpich2-install/include/mpi.h" 2 # 4 "conftest.c" 2 Found header files ['mpi.h'] in ['/home/feap/mpich2-install/include', '/home/feap/mpich2-install/include'] ================================================================================ TEST configureConversion from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:152) TESTING: configureConversion from PETSc.packages.MPI(python/PETSc/packages/MPI.py:152) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Defined "HAVE_MPI_COMM_F2C" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Defined "HAVE_MPI_COMM_C2F" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureTypes from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:172) TESTING: configureTypes from PETSc.packages.MPI(python/PETSc/packages/MPI.py:172) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMissingPrototypes from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:199) TESTING: configureMissingPrototypes from PETSc.packages.MPI(python/PETSc/packages/MPI.py:199) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:450) TESTING: SGIMPICheck from PETSc.packages.MPI(python/PETSc/packages/MPI.py:450) Returns true if SGI MPI is used Checking for functions ['MPI_SGI_barrier'] in library [] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x19): undefined reference to `_MPI_SGI_barrier' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x19): undefined reference to `_MPI_SGI_barrier' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); int main() { MPI_SGI_barrier() ; return 0; } Popping language C SGI MPI test failure ================================================================================ TEST FortranMPICheck from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:460) TESTING: FortranMPICheck from PETSc.packages.MPI(python/PETSc/packages/MPI.py:460) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h Checking for functions [''] in library [] [] Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Popping language FC Checking for fortran mpi_init() Checking for functions [''] in library [] [] Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Popping language FC Popping language FC ================================================================================ TEST checkSharedLibrary from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:110) TESTING: checkSharedLibrary from PETSc.packages.MPI(python/PETSc/packages/MPI.py:110) Check that the libraries for MPI are shared libraries ================================================================================ TEST configureMPIRUN from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:122) TESTING: configureMPIRUN from PETSc.packages.MPI(python/PETSc/packages/MPI.py:122) Checking for mpirun Pushing language C Popping language C Checking for program /home/feap/mpich2-install/bin/mpiexec...found Defined make macro "MPIRUN" to "/home/feap/mpich2-install/bin/mpiexec " sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a Executing: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a Executing: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o sh: Executing: /home/feap/mpich2-install/bin/mpiexec -np 1 ./conftest.exe sh: /home/feap/mpich2-install/bin/mpiexec -np 1 ./conftest.exe Executing: /home/feap/mpich2-install/bin/mpiexec -np 1 ./conftest.exe sh: mpiexec_lele: cannot connect to local mpd (/tmp/mpd2.console_feap); possible causes: 1. no mpd is running on this host 2. an mpd is running but was started without a "console" (-n option) ERROR while running executable: Could not execute '/home/feap/mpich2-install/bin/mpiexec -np 1 ./conftest.exe': mpiexec_lele: cannot connect to local mpd (/tmp/mpd2.console_feap); possible causes: 1. no mpd is running on this host 2. an mpd is running but was started without a "console" (-n option) Library was not shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sundials(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.sundials(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.spooles(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:323) TESTING: configureLibrary from PETSc.packages.spooles(python/PETSc/package.py:323) Find an installation ando check if it can work with PETSc ================================================================================== Checking for a functional spooles Could not locate an existing copy of spooles: ['fblaslapack']Downloading spooles Downloading ftp://ftp.mcs.anl.gov/pub/petsc/externalpackages/spooles-2.2-Sept_2005.tar.gz to /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles Uncompressing /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles.tar.gz sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages; gunzip spooles.tar.gz Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages; gunzip spooles.tar.gz sh: Expanding /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles.tar sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages; tar -xf spooles.tar Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages; tar -xf spooles.tar sh: sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2; rm -f Make.inc Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2; rm -f Make.inc sh: Pushing language C Popping language C Have to rebuild SPOOLES, Make.inc != /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/Make.inc ================================================================================= Compiling spooles; this may take several minutes ================================================================================= sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2; SPOOLES_INSTALL_DIR=/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt; export SPOOLES_INSTALL_DIR; make clean; make lib; HLISTS=`ls *.h`; cd cygwin-c-real-opt; for hlist in $HLISTS; do dir=`echo ${hlist} | sed s/"\.h"//`; mkdir $dir; cp ../$dir/*.h $dir/.; done; cp ../*.h .; cd ..; cd cygwin-c-real-opt; mv ../*.a .; mkdir MPI/src; mv ../MPI/src/*.a MPI/src/.;rm -f MPI.h Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2; SPOOLES_INSTALL_DIR=/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt; export SPOOLES_INSTALL_DIR; make clean; make lib; HLISTS=`ls *.h`; cd cygwin-c-real-opt; for hlist in $HLISTS; do dir=`echo ${hlist} | sed s/"\.h"//`; mkdir $dir; cp ../$dir/*.h $dir/.; done; cp ../*.h .; cd ..; cd cygwin-c-real-opt; mv ../*.a .; mkdir MPI/src; mv ../MPI/src/*.a MPI/src/.;rm -f MPI.h sh: cd A2 ; make clean make[1]: Entering directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/A2' cd src ; make clean make[2]: Entering directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/A2/src' rm -f *.a *.o make[2]: Leaving directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/A2/src' cd drivers ; make clean make[2]: Entering directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/A2/drivers' rm -f *.a *.o test_norms testQR make[2]: Leaving directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages... ... ome/feap/mpich2-install/include symbfacMPI.c -o symbfacMPI.o /usr/bin/ar cr spoolesMPI.a symbfacMPI.o rm symbfacMPI.o /home/feap/mpich2-install/bin/mpicc -c -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include utilities.c -o utilities.o /usr/bin/ar cr spoolesMPI.a utilities.o rm utilities.o spoolesMPI.a is now up-to-date make[2]: Leaving directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/MPI/src' make[1]: Leaving directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/MPI' Do NOT need to compile SPOOLES downloaded libraries sh: cp -f /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/Make.inc /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt Executing: cp -f /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/Make.inc /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt sh: Checking for library in Download SPOOLES: ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/MPI/src/spoolesMPI.a', '/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/spooles.a'] ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['InpMtx_init'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/MPI/src/spoolesMPI.a', '/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/spooles.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libflapack.a', '/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/MPI/src/spoolesMPI.a /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/spooles.a -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/MPI/src/spoolesMPI.a /home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/spooles.a -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-opt -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBSPOOLESMPI" to "1" Defined "HAVE_LIBSPOOLES" to "1" Popping language C Checking for headers Download SPOOLES: ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/', '/home/feap/mpich2-install/include'] ================================================================================ TEST checkInclude from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:46) TESTING: checkInclude from config.headers(python/BuildSystem/config/headers.py:46) Checks if a particular include file can be found along particular include paths sh: /home/feap/mpich2-install/bin/mpicc -E -I/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/ -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E -I/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/ -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/MPI/spoolesMPI.h" 1 # 1 "/home/feap/mpich2-install/include/mpi.h" 1 # 24 "/home/feap/mpich2-install/include/mpi.h" typedef int MPI_Datatype; # 95 "/home/feap/mpich2-install/include/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; # 115 "/home/feap/mpich2-install/include/mpi.h" typedef struct ADIOI_FileD *MPI_File; typedef int MPI_Op; # 187 "... ... "/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/MPI/spoolesMPI.h" void DenseMtx_MPI_scatterAddRows ( DenseMtx *Y, DenseMtx *X, IVL *sendIVL, IVL *recvIVL, int stats[], int msglvl, FILE *msgFile, int firsttag, MPI_Comm comm ) ; # 1177 "/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/MPI/spoolesMPI.h" void makeSendRecvIVLs ( IV *supportedIV, IV *globalmapIV, IVL *sendIVL, IVL *recvIVL, int stats[], int msglvl, FILE *msgFile, int firsttag, MPI_Comm comm ) ; # 4 "conftest.c" 2 Found header files ['MPI/spoolesMPI.h'] in ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/spooles-2.2/cygwin-c-real-opt/', '/home/feap/mpich2-install/include'] ================================================================================ TEST checkSharedLibrary from PETSc.packages.spooles(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:319) TESTING: checkSharedLibrary from PETSc.packages.spooles(python/PETSc/package.py:319) By default we don't care about checking if shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spai(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.spai(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PLAPACK(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.PLAPACK(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.ParMetis(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:323) TESTING: configureLibrary from PETSc.packages.ParMetis(python/PETSc/package.py:323) Find an installation ando check if it can work with PETSc ================================================================================== Checking for a functional ParMetis Could not locate an existing copy of ParMetis: ['fblaslapack', 'spooles-2.2']Downloading ParMetis Downloading bk://parmetis.bkbits.net/ParMetis-dev to /home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis Downloading ftp://ftp.mcs.anl.gov/pub/petsc/externalpackages/ParMetis.tar.gz to /home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis Uncompressing /home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis.tar.gz sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages; gunzip ParMetis.tar.gz Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages; gunzip ParMetis.tar.gz sh: Expanding /home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis.tar sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages; tar -xf ParMetis.tar Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages; tar -xf ParMetis.tar sh: ================================================================================= Configuring and compiling ParMetis; this may take several minutes ================================================================================= Checking for library in Download PARMETIS: ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/lib/libparmetis.a', 'libmetis.a'] ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['ParMETIS_V3_PartKway'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/lib/libparmetis.a', 'libmetis.a'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/lib -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/lib -lparmetis -lmetis Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -O conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/lib -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/lib -lparmetis -lmetis sh: Defined "HAVE_LIBPARMETIS" to "1" Defined "HAVE_LIBMETIS" to "1" Popping language C Checking for headers Download PARMETIS: ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/include', '/home/feap/mpich2-install/include'] ================================================================================ TEST checkInclude from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:46) TESTING: checkInclude from config.headers(python/BuildSystem/config/headers.py:46) Checks if a particular include file can be found along particular include paths sh: /home/feap/mpich2-install/bin/mpicc -E -I/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/include -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E -I/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/include -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/include/parmetis.h" 1 # 17 "/home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/include/parmetis.h" # 1 "/home/feap/mpich2-install/include/mpi.h" 1 # 24 "/home/feap/mpich2-install/include/mpi.h" typedef int MPI_Datatype; # 95 "/home/feap/mpich2-install/include/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; # 115 "/ho... ... ncy, int ndims, float *xyz, idxtype *part, int *options, MPI_Comm comm); void PARRMETIS( idxtype *vtxdist, idxtype *xadj, idxtype *vwgt, idxtype *adjncy, idxtype *adjwgt, idxtype *part, int *options, MPI_Comm comm); void PARUAMETIS( idxtype *vtxdist, idxtype *xadj, idxtype *vwgt, idxtype *adjncy, idxtype *adjwgt, idxtype *part, int *options, MPI_Comm comm); void PARDAMETIS( idxtype *vtxdist, idxtype *xadj, idxtype *vwgt, idxtype *adjncy, idxtype *adjwgt, idxtype *part, int *options, MPI_Comm comm); # 4 "conftest.c" 2 Possible ERROR while running preprocessor: In file included from conftest.c:3: /home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/include/parmetis.h:20:1: warning: "__cdecl" redefined :73:1: warning: this is the location of the previous definition error message = {In file included from conftest.c:3: /home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt/include/parmetis.h:20:1: warning: "__cdecl" redefined :73:1: warning: this is the location of the previous definition } Source: #include "confdefs.h" #include "conffix.h" #include ********************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): --------------------------------------------------------------------------------------- Downloaded parmetis could not be used. Please check install in /home/feap/Library/petsc-2.3.1-p5/externalpackages/ParMetis/cygwin-c-real-opt ********************************************************************************* File "./config/configure.py", line 166, in petsc_configure File "/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/framework.py", line 807, in configure child.configure() File "/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py", line 396, in configure self.executeTest(self.configureLibrary) File "/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/base.py", line 90, in executeTest return apply(test, args,kargs) File "/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py", line 345, in configureLibrary for location, dir, lib, incl in self.generateGuesses(): File "/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py", line 219, in generateGuesses raise RuntimeError('Downloaded '+self.package+' could not be used. Please check install in '+dir+'\n') ================================================================================= ================================================================================= Previous configure logs below ================================================================================= Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ** Cygwin-python-2.4 detected. Threads do not work correctly with this version * ********* Disabling thread usage for this run of config/configure.py ********** ================================================================================ ================================================================================ ================================================================================ Starting Configure Run at Fri Feb 17 15:03:54 2006 Configure Options: --with-mpi-dir=/home/feap/mpich2-install --download-f-blas-lapack=ifneeded --useThreads=0 --with-shared=0 --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions Working directory: /home/feap/Library/petsc-2.3.1-p5 Python version: 2.4.1 (#1, May 27 2005, 18:02:40) [GCC 3.3.3 (cygwin special)] ================================================================================ Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureLibrary from PETSc.packages.PVODE(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.PVODE(python/PETSc/packages/PVODE.py:10) Find a PVODE installation and check if it can work with PETSc ================================================================================ TEST configureLibrary from PETSc.packages.NetCDF(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/NetCDF.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(python/PETSc/packages/NetCDF.py:10) Find a NetCDF installation and check if it can work with PETSc ================================================================================ TEST configureBitKeeper from config.sourceControl(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/sourceControl.py:23) TESTING: configureBitKeeper from config.sourceControl(python/BuildSystem/config/sourceControl.py:23) Find the BitKeeper executable Checking for program /home/feap/mpich2-install/bin/bk...not found Checking for program /usr/local/bin/bk...not found Checking for program /usr/bin/bk...not found Checking for program /bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/bk...not found Checking for program /cygdrive/c/WINDOWS/system32/bk...not found Checking for program /cygdrive/c/WINDOWS/bk...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/bk...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/bk...not found Checking for program /cygdrive/c/LF9555/Bin/bk...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/bk...not found Checking for program /cygdrive/c/backup/4print/bk...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/bk...not found Checking for program /home/feap/bk...not found ================================================================================ TEST configureCVS from config.sourceControl(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/sourceControl.py:30) TESTING: configureCVS from config.sourceControl(python/BuildSystem/config/sourceControl.py:30) Find the CVS executable Checking for program /home/feap/mpich2-install/bin/cvs...not found Checking for program /usr/local/bin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /bin/cvs...not found Checking for program /usr/X11R6/bin/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/cvs...not found Checking for program /cygdrive/c/WINDOWS/system32/cvs...not found Checking for program /cygdrive/c/WINDOWS/cvs...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/cvs...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/cvs...not found Checking for program /cygdrive/c/LF9555/Bin/cvs...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/cvs...not found Checking for program /cygdrive/c/backup/4print/cvs...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/cvs...not found Checking for program /home/feap/cvs...not found ================================================================================ TEST configureSubversion from config.sourceControl(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/sourceControl.py:35) TESTING: configureSubversion from config.sourceControl(python/BuildSystem/config/sourceControl.py:35) Find the Subversion executable Checking for program /home/feap/mpich2-install/bin/svn...not found Checking for program /usr/local/bin/svn...not found Checking for program /usr/bin/svn...found Defined make macro "SVN" to "svn" ================================================================================ TEST configureMkdir from PETSc.utilities.programs(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/programs.py:21) TESTING: configureMkdir from PETSc.utilities.programs(python/PETSc/utilities/programs.py:21) Make sure we can have mkdir automatically make intermediate directories Checking for program /home/feap/mpich2-install/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found sh: /usr/bin/mkdir -p .conftest/tmp Executing: /usr/bin/mkdir -p .conftest/tmp sh: Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configurePrograms from PETSc.utilities.programs(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/programs.py:39) TESTING: configurePrograms from PETSc.utilities.programs(python/PETSc/utilities/programs.py:39) Check for the programs needed to build and run PETSc Checking for program /home/feap/mpich2-install/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /home/feap/mpich2-install/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Checking for program /home/feap/mpich2-install/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /home/feap/mpich2-install/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /home/feap/mpich2-install/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /home/feap/mpich2-install/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /home/feap/mpich2-install/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found sh: /usr/bin/diff -w diff1 diff2 Executing: /usr/bin/diff -w diff1 diff2 sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/feap/ps...not found Checking for program /home/feap/mpich2-install/bin/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" ================================================================================ TEST configureMake from PETSc.utilities.Make(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/Make.py:21) TESTING: configureMake from PETSc.utilities.Make(python/PETSc/utilities/Make.py:21) Check various things about make Checking for program /home/feap/mpich2-install/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" sh: strings /usr/bin/make Executing: strings /usr/bin/make sh: Make check failed: Could not execute 'strings /usr/bin/make': strings: /usr/bin/make: No such file or directory sh: strings /usr/bin/make.exe Executing: strings /usr/bin/make.exe sh: attempt to use unsupported feature: `%s' touch: Archive `%s' does not exist touch: touch: `%s' is not a valid archive touch: Member `%s' does not exist in `%s' touch: Bad return code from ar_member_touch on `%s' [^_] [^_] ! ARFILENAMES/ WVS1 [^_] .SUFFIXES [^_] $(MAKE) ${MAKE} [^_] +t&C @u,A kill *** [%s] Archive member `%s' may be bogus; not deleted *** Archive member `%s' may be bogus; not deleted *** [%s] Deleting file `%s' unlink: *** Deleting file `%s' $P)@ # commands to execute (built-in): %.*s (from `%s', line %lu): $-,@ $:,@ $A,@ $(AR) $(ARFLAGS) $@ $< %.out @rm -f $@ cp ... ... xecvp exit fclose fcntl fdopen fflush fgets fopen fprintf fputs fread free fstat fwrite getcwd getenv getlogin getpid getpwnam kill localtime lseek lstat malloc memcpy memmove memset mkstemp open opendir pipe printf putc puts qsort read readdir realloc remove setlocale setvbuf sigaction sigaddset sigemptyset signal sigprocmask sprintf sscanf stat strcasecmp strcat strchr strcmp strcpy strdup strerror strlen strncasecmp strncmp strrchr strsignal strtoul time unlink vfork vfprintf wait waitpid write libintl_bindtextdomain libintl_gettext libintl_textdomain KERNEL32.dll cygwin1.dll cygintl-2.dll Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC} ${SOBJSC})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(python/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /home/feap/mpich2-install/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...not found Checking for program /bin/gdb...not found Checking for program /usr/X11R6/bin/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/gdb...not found Checking for program /cygdrive/c/WINDOWS/system32/gdb...not found Checking for program /cygdrive/c/WINDOWS/gdb...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/gdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/gdb...not found Checking for program /cygdrive/c/LF9555/Bin/gdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/gdb...not found Checking for program /cygdrive/c/backup/4print/gdb...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/gdb...not found Checking for program /home/feap/gdb...not found Checking for program /home/feap/mpich2-install/bin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/dbx...not found Checking for program /cygdrive/c/WINDOWS/system32/dbx...not found Checking for program /cygdrive/c/WINDOWS/dbx...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/dbx...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/dbx...not found Checking for program /cygdrive/c/LF9555/Bin/dbx...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/dbx...not found Checking for program /cygdrive/c/backup/4print/dbx...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/dbx...not found Checking for program /home/feap/dbx...not found Checking for program /home/feap/mpich2-install/bin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/xdb...not found Checking for program /cygdrive/c/WINDOWS/system32/xdb...not found Checking for program /cygdrive/c/WINDOWS/xdb...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/xdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/xdb...not found Checking for program /cygdrive/c/LF9555/Bin/xdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/xdb...not found Checking for program /cygdrive/c/backup/4print/xdb...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/xdb...not found Checking for program /home/feap/xdb...not found ================================================================================ TEST configureScalarType from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:32) TESTING: configureScalarType from PETSc.utilities.languages(python/PETSc/utilities/languages.py:32) Choose between real and complex numbers Scalar type is real ================================================================================ TEST configurePrecision from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:42) TESTING: configurePrecision from PETSc.utilities.languages(python/PETSc/utilities/languages.py:42) Set the default real number precision for PETSc objects Precision is double ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:65) TESTING: configureCLanguage from PETSc.utilities.languages(python/PETSc/utilities/languages.py:65) Choose between C and C++ bindings Turning off C++ support Allowing C++ name mangling C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureExternC from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:87) TESTING: configureExternC from PETSc.utilities.languages(python/PETSc/utilities/languages.py:87) Protect C bindings from C++ mangling Defined "USE_EXTERN_CXX" to " " ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:93) TESTING: configureFortranLanguage from PETSc.utilities.languages(python/PETSc/utilities/languages.py:93) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/petscdir.py:35) TESTING: configureDirectories from PETSc.utilities.petscdir(python/PETSc/utilities/petscdir.py:35) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 2 #define PETSC_VERSION_MINOR 3 #define PETSC_VERSION_SUBMINOR 1 #define PETSC_VERSION_PATCH 5 #define PETSC_VERSION_DATE "February, 3, 2006" #define PETSC_VERSION_PATCH_DATE "Sat Feb 11 20:02:43 CST 2006" #define PETSC_VERSION_BK "balay@asterix.mcs.anl.gov|ChangeSet|20060212020213|15075" Defined make macro "DIR" to "/home/feap/Library/petsc-2.3.1-p5" Defined "DIR" to "/home/feap/Library/petsc-2.3.1-p5" sh: /bin/sh /home/feap/Library/petsc-2.3.1-p5/bin/config/config.guess Executing: /bin/sh /home/feap/Library/petsc-2.3.1-p5/bin/config/config.guess sh: i686-pc-cygwin sh: /bin/sh /home/feap/Library/petsc-2.3.1-p5/bin/config/config.sub i686-pc-cygwin Executing: /bin/sh /home/feap/Library/petsc-2.3.1-p5/bin/config/config.sub i686-pc-cygwin sh: i686-pc-cygwin ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/petscdir.py:113) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(python/PETSc/utilities/petscdir.py:113) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/petscdir.py:120) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(python/PETSc/utilities/petscdir.py:120) This is a tarball installation ================================================================================ TEST configureETags from PETSc.utilities.Etags(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(python/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(python/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST checkVendor from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:208) TESTING: checkVendor from config.setCompilers(python/BuildSystem/config/setCompilers.py:208) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:218) TESTING: checkInitialFlags from config.setCompilers(python/BuildSystem/config/setCompilers.py:218) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized executableFlags to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:321) TESTING: checkCCompiler from config.setCompilers(python/BuildSystem/config/setCompilers.py:321) Locate a functional C compiler Checking for program /home/feap/mpich2-install/bin/mpicc...found Defined make macro "CC" to "/home/feap/mpich2-install/bin/mpicc" Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:370) TESTING: checkCPreprocessor from config.setCompilers(python/BuildSystem/config/setCompilers.py:370) Locate a functional C preprocessor Checking for program /home/feap/mpich2-install/bin/mpicc...found Defined make macro "CPP" to "/home/feap/mpich2-install/bin/mpicc -E" Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 183 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 4 "conftest.c" 2 Popping language C ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:468) TESTING: checkCxxCompiler from config.setCompilers(python/BuildSystem/config/setCompilers.py:468) Locate a functional Cxx compiler ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:623) TESTING: checkFortranCompiler from config.setCompilers(python/BuildSystem/config/setCompilers.py:623) Locate a functional Fortran compiler Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif77...found Defined make macro "FC" to "/home/feap/mpich2-install/bin/mpif77" Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe conftest.o sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:658) TESTING: checkFortranComments from config.setCompilers(python/BuildSystem/config/setCompilers.py:658) Make sure fortran comment "!" works Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkBrokenMpif90 from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:667) TESTING: checkBrokenMpif90 from config.setCompilers(python/BuildSystem/config/setCompilers.py:667) mpif90 from mpich1 and older c-preprocessor combinations misbehave Pushing language FC Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:707) TESTING: checkPIC from config.setCompilers(python/BuildSystem/config/setCompilers.py:707) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Trying C compiler flag -PIC sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -PIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -PIC conftest.o sh: Possible ERROR while running linker: gcc: unrecognized option `-PIC' output: error message = {gcc: unrecognized option `-PIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -PIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting C linker flag -PIC due to gcc: unrecognized option `-PIC' Rejected C compiler flag -PIC because linker cannot handle it Trying C compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -fPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -fPIC conftest.o sh: Valid C linker flag -fPIC Adding C compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:1: warning: -fPIC ignored for target (all code is position independent) } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -fPIC due to conftest.c:1: warning: -fPIC ignored for target (all code is position independent) Rejected C compiler flag -fPIC Trying C compiler flag -KPIC sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -KPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -KPIC conftest.o sh: Possible ERROR while running linker: gcc: unrecognized option `-KPIC' output: error message = {gcc: unrecognized option `-KPIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -KPIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting C linker flag -KPIC due to gcc: unrecognized option `-KPIC' Rejected C compiler flag -KPIC because linker cannot handle it Popping language C Pushing language FC Trying FC compiler flag -PIC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -PIC conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -PIC conftest.o sh: Possible ERROR while running linker: g77: unrecognized option `-PIC' output: error message = {g77: unrecognized option `-PIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -PIC conftest.o Source: program main end Rejecting FC linker flag -PIC due to g77: unrecognized option `-PIC' Rejected FC compiler flag -PIC because linker cannot handle it Trying FC compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -fPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -fPIC conftest.o sh: Valid FC linker flag -fPIC Adding FC compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -fPIC conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -fPIC conftest.F sh: Possible ERROR while running compiler: error message = {conftest.F:0: warning: -fPIC ignored for target (all code is position independent) /cygdrive/c/DOCUME~1/feap/LOCALS~1/Temp/ccWu3B6j.f:0: warning: -fPIC ignored for target (all code is position independent) } Source: program main end Rejecting compiler flag -fPIC due to conftest.F:0: warning: -fPIC ignored for target (all code is position independent) /cygdrive/c/DOCUME~1/feap/LOCALS~1/Temp/ccWu3B6j.f:0: warning: -fPIC ignored for target (all code is position independent) Rejected FC compiler flag -fPIC Trying FC compiler flag -KPIC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -KPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -KPIC conftest.o sh: Possible ERROR while running linker: g77: unrecognized option `-KPIC' output: error message = {g77: unrecognized option `-KPIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -KPIC conftest.o Source: program main end Rejecting FC linker flag -KPIC due to g77: unrecognized option `-KPIC' Rejected FC compiler flag -KPIC because linker cannot handle it Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:747) TESTING: checkLargeFileIO from config.setCompilers(python/BuildSystem/config/setCompilers.py:747) ================================================================================ TEST checkArchiver from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:837) TESTING: checkArchiver from config.setCompilers(python/BuildSystem/config/setCompilers.py:837) Check that the archiver exists and can make a library usable by the compiler Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Checking for program /home/feap/mpich2-install/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /home/feap/mpich2-install/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib -c libconf1.a Executing: /usr/bin/ranlib -c libconf1.a sh: Possible ERROR while running ranlib: error message = {/usr/bin/ranlib: '-c': No such file } Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Checking for program /home/feap/mpich2-install/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /home/feap/mpich2-install/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib libconf1.a Executing: /usr/bin/ranlib libconf1.a sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconf1 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconf1 sh: Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:940) TESTING: checkSharedLinker from config.setCompilers(python/BuildSystem/config/setCompilers.py:940) Check that the linker can produce shared libraries Checking shared linker /home/feap/mpich2-install/bin/mpicc using flags ['-shared'] Checking for program /home/feap/mpich2-install/bin/mpicc...found Defined make macro "LD_SHARED" to "/home/feap/mpich2-install/bin/mpicc" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -shared conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -shared conftest.o sh: Valid C linker flag -shared sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o libconftest.so -shared conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o libconftest.so -shared conftest.o sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lconftest collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lconftest collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Checking shared linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "LD_SHARED" to "/usr/bin/ar" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a Executing: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest sh: Using shared linker /usr/bin/ar with flags [] and library extension a sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:1011) TESTING: checkSharedLinkerPaths from config.setCompilers(python/BuildSystem/config/setCompilers.py:1011) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -flags Executing: /home/feap/mpich2-install/bin/mpicc -flags sh: Trying C linker flag -Wl,-rpath, sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o sh: Valid C linker flag -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 Popping language C Pushing language FC sh: /home/feap/mpich2-install/bin/mpicc -flags Executing: /home/feap/mpich2-install/bin/mpicc -flags sh: Trying FC linker flag -Wl,-rpath, sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o sh: Valid FC linker flag -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 Popping language FC ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:1083) TESTING: checkDynamicLinker from config.setCompilers(python/BuildSystem/config/setCompilers.py:1083) Check that the linker can produce dynamic libraries Checking for header: dlfcn.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 19 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *, int); extern void *dlsym (void *, const char *); extern int dlclose (void *); extern char *dlerror (void); extern void dlfork (int); # 4 "conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for functions ['dlopen', 'dlsym', 'dlclose'] in library ['dl'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -ldl Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -ldl sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -ldl collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -ldl collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); int main() { dlopen() ; return 0; } Popping language C Checking for functions ['dlopen', 'dlsym', 'dlclose'] in library [''] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Popping language C sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 Checking dynamic linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "DYNAMICLINKER" to "/usr/bin/ar" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /usr/bin/ar -o libconftest.so conftest.o Executing: /usr/bin/ar -o libconftest.so conftest.o sh: Possible ERROR while running linker: /usr/bin/ar: no operation specified output: ret = 256 error message = {/usr/bin/ar: no operation specified } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Source: #include "confdefs.h" #include "conffix.h" int foo(void) {return 0;} Checking dynamic linker /home/feap/mpich2-install/bin/mpicc using flags ['-shared'] Checking for program /home/feap/mpich2-install/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/home/feap/mpich2-install/bin/mpicc" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -shared conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -shared conftest.o sh: Valid C linker flag -shared sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o libconftest.so -shared conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o libconftest.so -shared conftest.o sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Using dynamic linker /home/feap/mpich2-install/bin/mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:1129) TESTING: output from config.setCompilers(python/BuildSystem/config/setCompilers.py:1129) Output module data as defines and substitutions Substituting "CC" with "/home/feap/mpich2-install/bin/mpicc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/home/feap/mpich2-install/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "" Substituting "FC" with "/home/feap/mpich2-install/bin/mpif77" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "" Substituting "SHARED_LIBRARY_FLAG" with "" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilerFlags.py:66) TESTING: configureCompilerFlags from config.compilerFlags(python/BuildSystem/config/compilerFlags.py:66) Get the default compiler flags Pushing language C sh: /home/feap/mpich2-install/bin/mpicc --version Executing: /home/feap/mpich2-install/bin/mpicc --version sh: gcc (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) Copyright (C) 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /home/feap/mpich2-install/bin/mpicc gcc (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) sh: /home/feap/mpich2-install/bin/mpicc -show Executing: /home/feap/mpich2-install/bin/mpicc -show sh: gcc -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -Wall sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall conftest.c sh: Added C compiler flag -Wall Trying C compiler flag -Wshadow sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow conftest.c sh: Added C compiler flag -Wshadow Trying C compiler flag -Wwrite-strings sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings conftest.c sh: Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-long-double sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -Wno-long-double conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -Wno-long-double conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {cc1: error: unrecognized command line option "-Wno-long-double" } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -Wno-long-double due to nonzero status from link Rejecting compiler flag -Wno-long-double due to cc1: error: unrecognized command line option "-Wno-long-double" PETSc Error: No output file produced Rejected C compiler flag -Wno-long-double Trying C compiler flag -fomit-frame-pointer sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer conftest.c sh: Added C compiler flag -fomit-frame-pointer Trying C compiler flag -Wno-strict-aliasing sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing conftest.c sh: Added C compiler flag -Wno-strict-aliasing sh: /home/feap/mpich2-install/bin/mpicc -show Executing: /home/feap/mpich2-install/bin/mpicc -show sh: gcc -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -g3 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Added C compiler flag -g3 Popping language C Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 --version Executing: /home/feap/mpich2-install/bin/mpif77 --version sh: GNU Fortran (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) Copyright (C) 2004 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING or type the command `info -f g77 Copying'. getCompilerVersion: /home/feap/mpich2-install/bin/mpif77 GNU Fortran (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) sh: /home/feap/mpich2-install/bin/mpif77 -show Executing: /home/feap/mpich2-install/bin/mpif77 -show sh: g77 -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich sh: g77 --help Executing: g77 --help sh: Usage: g77 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g77. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -Wall sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall conftest.F sh: Added FC compiler flag -Wall sh: /home/feap/mpich2-install/bin/mpif77 -show Executing: /home/feap/mpich2-install/bin/mpif77 -show sh: g77 -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich sh: g77 --help Executing: g77 --help sh: Usage: g77 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g77. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -g sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Added FC compiler flag -g Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(python/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/arch.py:39) TESTING: configureArchitecture from PETSc.utilities.arch(python/PETSc/utilities/arch.py:39) Checks PETSC_ARCH and sets if not set Defined "ARCH" to "cygwin" Defined "ARCH_NAME" to ""cygwin-c-real-debug"" Substituting "ARCH" with "cygwin-c-real-debug" ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/sharedLibraries.py:41) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(python/PETSc/utilities/sharedLibraries.py:41) Defined make rule "shared_arch" with dependencies "" and code [] Defined make macro "BUILDSHAREDLIB" to "no" ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/sharedLibraries.py:53) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(python/PETSc/utilities/sharedLibraries.py:53) Checks whether dynamic libraries should be used, for which you must - Specify --with-dynamic - Have found a working dynamic linker (with dlfcn.h and libdl) Defines PETSC_USE_DYNAMIC_LIBRARIES if they are used Dynamic libraries - disabled ================================================================================ TEST configureBmakeDir from PETSc.utilities.bmakeDir(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/bmakeDir.py:26) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(python/PETSc/utilities/bmakeDir.py:26) Makes bmake/$PETSC_ARCH if it does not exist Changed persistence directory to bmake/cygwin-c-real-debug sh: /home/feap/mpich2-install/bin/mpicc --help Executing: /home/feap/mpich2-install/bin/mpicc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:126) TESTING: checkRestrict from config.compilers(python/BuildSystem/config/compilers.py:126) Check for the C/CXX restrict keyword Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:5: error: syntax error before "x" } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:5: warning: unused variable `x' } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:244) TESTING: checkCFormatting from config.compilers(python/BuildSystem/config/compilers.py:244) Activate format string checking if using the GNU compilers compilers: Added gcc printf format checking Defined "PRINTF_FORMAT_CHECK(A,B)" to "__attribute__((format (printf, A, B)))" ================================================================================ TEST checkCStaticInline from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:97) TESTING: checkCStaticInline from config.compilers(python/BuildSystem/config/compilers.py:97) Check for C keyword: static inline Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `i' } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:254) TESTING: checkDynamicLoadFlag from config.compilers(python/BuildSystem/config/compilers.py:254) Checks that dlopen() takes RTLD_GLOBAL, and defines PETSC_HAVE_RTLD_GLOBAL if it does sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:153) TESTING: checkCLibraries from config.compilers(python/BuildSystem/config/compilers.py:153) Determines the libraries needed to link with C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: mpicc for 1.0.3 Possible ERROR while running linker: Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lpmpich -lmpich -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc output: mpicc for 1.0.3 error message = {Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lpmpich -lmpich -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Checking arg mpicc compilers: Unknown arg mpicc compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.0.3 compilers: Unknown arg 1.0.3 compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Unknown arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Checking arg --verbose compilers: Unknown arg --verbose compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --exec-prefix=/usr compilers: Unknown arg --exec-prefix=/usr compilers: Checking arg --sysconfdir=/etc compilers: Unknown arg --sysconfdir=/etc compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Unknown arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-version-specific-runtime-libs compilers: Unknown arg --enable-version-specific-runtime-libs compilers: Checking arg --without-x compilers: Unknown arg --without-x compilers: Checking arg --enable-libgcj compilers: Unknown arg --enable-libgcj compilers: Checking arg --disable-java-awt compilers: Unknown arg --disable-java-awt compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-interpreter compilers: Unknown arg --enable-interpreter compilers: Checking arg --disable-libgcj-debug compilers: Unknown arg --disable-libgcj-debug compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --enable-java-gc=boehm compilers: Unknown arg --enable-java-gc=boehm compilers: Checking arg --disable-win32-registry compilers: Unknown arg --disable-win32-registry compilers: Checking arg --enable-sjlj-exceptions compilers: Unknown arg --enable-sjlj-exceptions compilers: Checking arg --enable-hash-synchronization compilers: Unknown arg --enable-hash-synchronization compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg (reconfigured) compilers: Unknown arg (reconfigured) compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.4.4 compilers: Unknown arg 3.4.4 compilers: Checking arg (cygming compilers: Unknown arg (cygming compilers: Checking arg special) compilers: Unknown arg special) compilers: Checking arg (gdc compilers: Unknown arg (gdc compilers: Checking arg 0.12, compilers: Unknown arg 0.12, compilers: Checking arg using compilers: Unknown arg using compilers: Checking arg dmd compilers: Unknown arg dmd compilers: Checking arg 0.125) compilers: Unknown arg 0.125) compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg --dll-search-prefix=cyg compilers: Unknown arg --dll-search-prefix=cyg compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest.exe compilers: Unknown arg conftest.exe compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Checking arg -L/home/feap/mpich2-install/lib compilers: Found library or library directory: -L/home/feap/mpich2-install/lib compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -lpmpich compilers: Found library or library directory: -lpmpich compilers: Checking arg -lmpich compilers: Found library or library directory: -lmpich compilers: Checking arg -lgcc compilers: Checking arg -lcygwin compilers: Found library or library directory: -lcygwin compilers: Checking arg -luser32 compilers: Found library or library directory: -luser32 compilers: Checking arg -lkernel32 compilers: Checking arg -ladvapi32 compilers: Found library or library directory: -ladvapi32 compilers: Checking arg -lshell32 compilers: Found library or library directory: -lshell32 compilers: Checking arg -lgcc compilers: Libraries needed to link C code with another linker: ['-L/home/feap/mpich2-install/lib', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lpmpich', '-lmpich', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] compilers: Check that C libraries can be used from Fortran Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lpmpich -lmpich -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lpmpich -lmpich -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../libcygwin.a(libcmain.o):: undefined reference to `_WinMain@16' collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../libcygwin.a(libcmain.o):: undefined reference to `_WinMain@16' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lpmpich -lmpich -lcygwin -luser32 -ladvapi32 -lshell32 Source: program main end Popping language FC compilers: C libraries cannot directly be used from Fortran compilers: Error message from compiling {Cannot compile/link FC with /home/feap/mpich2-install/bin/mpicc.} ================================================================================ TEST checkFortranTypeSizes from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:405) TESTING: checkFortranTypeSizes from config.compilers(python/BuildSystem/config/compilers.py:405) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Possible ERROR while running compiler: error message = {conftest.F: In program `main': In file included from conftest.F:0: conftest.F:2: warning: unused variable 'variable' } Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:464) TESTING: checkFortranNameMangling from config.compilers(python/BuildSystem/config/compilers.py:464) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Popping language C Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o confc.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o confc.o sh: Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:497) TESTING: checkFortranNameManglingDouble from config.compilers(python/BuildSystem/config/compilers.py:497) Checks if symbols containing and underscore append and extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Popping language C Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o confc.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o confc.o sh: Popping language FC compilers: Fortran appends and extra underscore to names containing underscores Defined "HAVE_FORTRAN_UNDERSCORE_UNDERSCORE" to "1" ================================================================================ TEST checkFortranPreprocessor from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:507) TESTING: checkFortranPreprocessor from config.compilers(python/BuildSystem/config/compilers.py:507) Determine if Fortran handles preprocessing properly Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -DPTesting conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -DPTesting conftest.F sh: Added FC compiler flag Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranLibraries from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:529) TESTING: checkFortranLibraries from config.compilers(python/BuildSystem/config/compilers.py:529) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -V Executing: /home/feap/mpich2-install/bin/mpif77 -V sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -v -Wall -g conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -v -Wall -g conftest.o sh: mpif77 for 1.0.3 Possible ERROR while running linker: Driving: g77 -o conftest.exe -v -Wall -g conftest.o -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lpmpich -lmpich -lfrtbegin -lg2c -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc output: mpif77 for 1.0.3 error message = {Driving: g77 -o conftest.exe -v -Wall -g conftest.o -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lpmpich -lmpich -lfrtbegin -lg2c -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -v -Wall -g conftest.o Source: program main end Popping language FC compilers: Checking arg mpif77 compilers: Unknown arg mpif77 compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.0.3 compilers: Unknown arg 1.0.3 compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg g77 compilers: Unknown arg g77 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest.exe compilers: Unknown arg conftest.exe compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -I/home/feap/mpich2-install/include compilers: Found include directory: /home/feap/mpich2-install/include compilers: Checking arg -L/home/feap/mpich2-install/lib compilers: Found library or library directory: -L/home/feap/mpich2-install/lib compilers: Checking arg -lpmpich compilers: Found library or library directory: -lpmpich compilers: Checking arg -lmpich compilers: Found library or library directory: -lmpich compilers: Checking arg -lfrtbegin sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 compilers: Found library or library directory: -lfrtbegin compilers: Checking arg -lg2c compilers: Found library or library directory: -lg2c compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Unknown arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Checking arg --verbose compilers: Unknown arg --verbose compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --exec-prefix=/usr compilers: Unknown arg --exec-prefix=/usr compilers: Checking arg --sysconfdir=/etc compilers: Unknown arg --sysconfdir=/etc compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Unknown arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-version-specific-runtime-libs compilers: Unknown arg --enable-version-specific-runtime-libs compilers: Checking arg --without-x compilers: Unknown arg --without-x compilers: Checking arg --enable-libgcj compilers: Unknown arg --enable-libgcj compilers: Checking arg --disable-java-awt compilers: Unknown arg --disable-java-awt compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-interpreter compilers: Unknown arg --enable-interpreter compilers: Checking arg --disable-libgcj-debug compilers: Unknown arg --disable-libgcj-debug compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --enable-java-gc=boehm compilers: Unknown arg --enable-java-gc=boehm compilers: Checking arg --disable-win32-registry compilers: Unknown arg --disable-win32-registry compilers: Checking arg --enable-sjlj-exceptions compilers: Unknown arg --enable-sjlj-exceptions compilers: Checking arg --enable-hash-synchronization compilers: Unknown arg --enable-hash-synchronization compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg (reconfigured) compilers: Unknown arg (reconfigured) compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.4.4 compilers: Unknown arg 3.4.4 compilers: Checking arg (cygming compilers: Unknown arg (cygming compilers: Checking arg special) compilers: Unknown arg special) compilers: Checking arg (gdc compilers: Unknown arg (gdc compilers: Checking arg 0.12, compilers: Unknown arg 0.12, compilers: Checking arg using compilers: Unknown arg using compilers: Checking arg dmd compilers: Unknown arg dmd compilers: Checking arg 0.125) compilers: Unknown arg 0.125) compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg --dll-search-prefix=cyg compilers: Unknown arg --dll-search-prefix=cyg compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest.exe compilers: Unknown arg conftest.exe compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Checking arg -L/home/feap/mpich2-install/lib compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -lpmpich compilers: Checking arg -lmpich compilers: Checking arg -lfrtbegin compilers: Checking arg -lg2c compilers: Checking arg -lgcc compilers: Checking arg -lcygwin compilers: Found library or library directory: -lcygwin compilers: Checking arg -luser32 compilers: Found library or library directory: -luser32 compilers: Checking arg -lkernel32 compilers: Checking arg -ladvapi32 compilers: Found library or library directory: -ladvapi32 compilers: Checking arg -lshell32 compilers: Found library or library directory: -lshell32 compilers: Checking arg -lgcc compilers: Libraries needed to link Fortran code with the C linker: ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C compilers: Check for Intel PEPCF90 library Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lPEPCF90 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lPEPCF90 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lPEPCF90 collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lPEPCF90 collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lPEPCF90 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Intel PEPCF90 library does not exist ================================================================================ TEST checkFortran90 from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:821) TESTING: checkFortran90 from config.compilers(python/BuildSystem/config/compilers.py:821) Determine whether the Fortran compiler handles F90 Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.F: In program `main': conftest.F:2: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) ^ Fortran 90 feature at (^) unsupported conftest.F:2: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) ^ Invalid declaration of or reference to symbol `selected_int_kind' at (^) [initially seen at (^)] conftest.F:2: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) 1 conftest.F:3: (continued): INTEGER (KIND=int) :: ierr 2 Invalid declaration of or reference to symbol `int' at (2) [initially seen at (1)] } Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Compile failed inside link Fortran compiler does not support F90 Popping language FC ================================================================================ TEST checkFortran90Interface from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:867) TESTING: checkFortran90Interface from config.compilers(python/BuildSystem/config/compilers.py:867) Check for custom F90 interfaces, such as that provided by PETSc ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:931) TESTING: setupFrameworkCompilers from config.compilers(python/BuildSystem/config/compilers.py:931) ================================================================================ TEST configureLibrary from PETSc.packages.Mathematica(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/Mathematica.py:15) TESTING: configureLibrary from PETSc.packages.Mathematica(python/PETSc/packages/Mathematica.py:15) Find a Mathematica installation and check if it can work with PETSc ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/fortranCPP.py:26) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(python/PETSc/utilities/fortranCPP.py:26) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $<'] Defined make rule ".f.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<'] Defined make rule ".F.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:59) TESTING: checkStdC from config.headers(python/BuildSystem/config/headers.py:59) sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... y (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 4 "conftest.c" 2 sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 183 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 4 "conftest.c" 2 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:92) TESTING: checkStat from config.headers(python/BuildSystem/config/headers.py:92) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr... ... (__cdecl__)) fchmod (int __fd, mode_t __mode); int __attribute__((__cdecl__)) fstat ( int __fd, struct stat *__sbuf ); int __attribute__((__cdecl__)) mkdir ( const char *_path, mode_t __mode ); int __attribute__((__cdecl__)) mkfifo ( const char *__path, mode_t __mode ); int __attribute__((__cdecl__)) stat ( const char *__path, struct stat *__sbuf ); mode_t __attribute__((__cdecl__)) umask ( mode_t __mask ); int __attribute__((__cdecl__)) lstat ( const char *__path, struct stat *__buf ); int __attribute__((__cdecl__)) mknod ( const char *__path, mode_t __mode, dev_t __dev ); # 6 "conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:127) TESTING: checkSysWait from config.headers(python/BuildSystem/config/headers.py:127) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:149) TESTING: checkTime from config.headers(python/BuildSystem/config/headers.py:149) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_... ... d, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *evp, timer_t *timerid); int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *value, struct itimerspec *ovalue); int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 9 "/usr/inc... ... itimerval { struct timeval it_interval; struct timeval it_value; }; # 73 "/usr/include/sys/time.h" 3 4 int __attribute__((__cdecl__)) gettimeofday (struct timeval *__p, struct timezone *__z); int __attribute__((__cdecl__)) settimeofday (const struct timeval *, const struct timezone *); int __attribute__((__cdecl__)) utimes (const char *__path, const struct timeval *__tvp); int __attribute__((__cdecl__)) getitimer (int __which, struct itimerval *__value); int __attribute__((__cdecl__)) setitimer (int __which, const struct itimerval *__value, struct itimerval *__ovalue); # 4 "conftest.c" 2 Defined "HAVE_SYS_TIME_H" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:17: dos.h: No such file or directory ret = 256 error message = {conftest.c:3:17: dos.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 14 "/usr/include/endian.h" 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 15 "/usr/include/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 14 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/sys/fcntl.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/s... ... ); int __attribute__((__cdecl__)) mkfifo ( const char *__path, mode_t __mode ); int __attribute__((__cdecl__)) stat ( const char *__path, struct stat *__sbuf ); mode_t __attribute__((__cdecl__)) umask ( mode_t __mask ); int __attribute__((__cdecl__)) lstat ( const char *__path, struct stat *__buf ); int __attribute__((__cdecl__)) mknod ( const char *__path, mode_t __mode, dev_t __dev ); # 165 "/usr/include/sys/fcntl.h" 2 3 4 extern int open (const char *, int, ...); extern int creat (const char *, mode_t); extern int fcntl (int, int, ...); # 15 "/usr/include/fcntl.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/float.h" 1 3 4 # 4 "conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/io.h" 1 3 4 # 21 "/usr/include/io.h" 3 4 extern long get_osfhandle(int); extern int setmode (int __fd, int __mode); int access(const char *__path, int __amode); # 4 "conftest.c" 2 Defined "HAVE_IO_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 1 3 4 # 11 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 ... ... 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 14 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 7 "/usr/inclu... ... nt fsmblks; int uordblks; int fordblks; int keepcost; }; extern void * malloc (size_t); extern void free (void *); extern void * realloc (void *, size_t); extern void * calloc (size_t, size_t); extern void * memalign (size_t, size_t); extern struct mallinfo mallinfo (void); extern void malloc_stats (void); extern int mallopt (int, int); extern size_t malloc_usable_size (void *); # 112 "/usr/include/malloc.h" 3 4 extern void * valloc (size_t); extern void * pvalloc (size_t); extern int malloc_trim (size_t); # 138 "/usr/include/malloc.h" 3 4 extern void mstats (char *); # 4 "conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 42 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/confi... ... attr_t {char __dummy;} *pthread_rwlockattr_t; # 373 "/usr/include/sys/types.h" 2 3 4 # 43 "/usr/include/pwd.h" 2 3 4 struct passwd { char *pw_name; char *pw_passwd; uid_t pw_uid; gid_t pw_gid; char *pw_comment; char *pw_gecos; char *pw_dir; char *pw_shell; }; struct passwd *getpwuid (uid_t); struct passwd *getpwnam (const char *); int getpwnam_r (const char *, struct passwd *, char *, size_t , struct passwd **); int getpwuid_r (uid_t, struct passwd *, char *, size_t, struct passwd **); struct passwd *getpwent (void); void setpwent (void); void endpwent (void); # 4 "conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 12 "/usr/include/search.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 13 "/usr/include/search.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config... ... *); void *tdelete (const void * __restrict, void ** __restrict, int (*) (const void *, const void *)); void tdestroy (void *, void (*)(void *)); void *tfind (const void *, void **, int (*) (const void *, const void *)); void *tsearch (const void *, void **, int (*) (const void *, const void *)); void twalk (const void *, void (*) (const void *, VISIT, int)); void *lfind (const void *, const void *, size_t *, size_t, int (*) (const void *, const void *)); void *lsearch (const void *, void *, size_t *, size_t, int (*) (const void *, const void *)); # 4 "conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/s... ... nt __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 5 "/usr/include/strings.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stropts.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:21: stropts.h: No such file or directory ret = 256 error message = {conftest.c:3:21: stropts.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 1 "/usr/include/sys/unistd.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/... ... ibute__((__cdecl__)) setdtablesize (int); useconds_t __attribute__((__cdecl__)) ualarm (useconds_t __useconds, useconds_t __interval); unsigned __attribute__((__cdecl__)) usleep (unsigned int __useconds); int __attribute__((__cdecl__)) gethostname (char *__name, size_t __len); char * __attribute__((__cdecl__)) mktemp (char *); void __attribute__((__cdecl__)) sync (void); int __attribute__((__cdecl__)) readlink (const char *__path, char *__buf, int __buflen); int __attribute__((__cdecl__)) symlink (const char *__name1, const char *__name2); # 5 "/usr/include/unistd.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/machine/endian.h" 1 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 4 "/usr/include/machine/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 12 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/... ... -cygwin/3.4.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 14 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 15 "/usr/include/sys/param.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 4 # 16 "/usr/include/sys/procfs.h" 3 4 # 1 "/usr/include/cygwin/core_dump.h" 1 3 4 # 16 "/usr/include/cygwin/core_dump.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 1 3 4 # 16 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 3 # 47 "/usr/lib/gcc/i686-pc-cygwin/3.4.... ... ead_info { DWORD tid; BOOL is_active_thread; CONTEXT thread_context; } __attribute__ ((packed)) ; struct win32_core_module_info { void* base_address; int module_name_size; char module_name[1]; } __attribute__ ((packed)) ; struct win32_pstatus { unsigned long data_type; union { struct win32_core_process_info process_info; struct win32_core_thread_info thread_info; struct win32_core_module_info module_info; } data ; } __attribute__ ((packed)) ; typedef struct win32_pstatus win32_pstatus_t ; # 17 "/usr/include/sys/procfs.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 14 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/... ... im_t rlim_max; }; struct rusage { struct timeval ru_utime; struct timeval ru_stime; long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; int getrlimit (int __resource, struct rlimit *__rlp); int setrlimit (int __resource, const struct rlimit *__rlp); int getrusage (int __who, struct rusage *__rusage); int getpriority (int which, id_t who); int setpriority (int which, id_t who, int value); # 4 "conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/in... ... "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 9 "/usr/include/sys/times.h" 2 3 4 typedef unsigned long clock_t; struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; clock_t __attribute__((__cdecl__)) times (struct tms *); # 4 "conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 18 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[20]; char nodename[20]; char release[20]; char version[20]; char machine[20]; }; int uname (struct utsname *); # 4 "conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... y (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 183 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 4 "conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 14 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 15 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # ... ... int sendmsg(int s, const struct msghdr *msg, int flags); int sendto (int, const void *, int __len, int __flags, const struct sockaddr *__to, int __tolen); int setsockopt (int __s, int __level, int __optname, const void *optval, int __optlen); int getsockopt (int __s, int __level, int __optname, void *__optval, int *__optlen); int shutdown (int, int); int socket (int __family, int __type, int __protocol); int socketpair (int __domain, int __type, int __protocol, int *__socket_vec); struct servent *getservbyname (const char *__name, const char *__proto); # 4 "conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 14 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cy... ... /usr/include/sys/wait.h" 2 3 4 # 41 "/usr/include/sys/wait.h" 3 4 pid_t wait (int *); pid_t waitpid (pid_t, int *, int); pid_t wait3 (int *__status, int __options, struct rusage *__rusage); pid_t wait4 (pid_t __pid, int *__status, int __options, struct rusage *__rusage); union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 4 "conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 14 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/cygwin/in.h" 1 3 4 # 21 "/usr/include/cygwin/in.h" 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 18 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef long int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uin... ... unsigned short int __ntohs(unsigned short int); extern __inline__ unsigned long int __constant_ntohl(unsigned long int); extern __inline__ unsigned short int __constant_ntohs(unsigned short int); extern __inline__ unsigned long int __ntohl(unsigned long int x) { __asm__("xchgb %b0,%h0\n\t" "rorl $16,%0\n\t" "xchgb %b0,%h0" :"=q" (x) : "0" (x)); return x; } extern __inline__ unsigned short int __ntohs(unsigned short int x) { __asm__("xchgb %b0,%h0" : "=q" (x) : "0" (x)); return x; } # 179 "/usr/include/cygwin/in.h" 2 3 4 # 15 "/usr/include/netinet/in.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 73 "/usr/include/netdb.h" 3 4 struct hostent { const char *h_name; char **h_aliases; short h_addrtype; short h_length; char **h_addr_list; }; struct netent { char *n_name; char **n_aliases; short n_addrtype; unsigned long n_net; }; struct servent { char *s_name; char **s_aliases; short s_port; char *s_proto; }; struct protoent { char *p_name; char **p_aliases; short p_proto; }; struct rpcent { c... ... tent *getnetent (void); struct protoent *getprotobyname (const char *); struct protoent *getprotobynumber (int); struct protoent *getprotoent (void); struct servent *getservbyname (const char *, const char *); struct servent *getservbyport (int, const char *); struct servent *getservent (void); struct rpcent *getrpcent (void); struct rpcent *getrpcbyname (const char *); struct rpcent *getrpcbynumber (int); const char *hstrerror (int); void herror (const char *); void sethostent (int); void setnetent (int); void setprotoent (int); void setservent (int); void setrpcent (int); # 4 "conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: Direct.h: No such file or directory ret = 256 error message = {conftest.c:3:20: Direct.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_... ... d, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *evp, timer_t *timerid); int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *value, struct itimerspec *ovalue); int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 1 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 4 # 13 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/winsock2.h" 1 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/winsock2.h" 3 4 # 18 "/usr/lib/gcc/i68... ... i_canonname; struct sockaddr *ai_addr; struct addrinfo *ai_next; }; # 322 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 struct sockaddr_in6_old { short sin6_family; u_short sin6_port; u_long sin6_flowinfo; struct in6_addr sin6_addr; }; typedef union sockaddr_gen{ struct sockaddr Address; struct sockaddr_in AddressIn; struct sockaddr_in6_old AddressIn6; } sockaddr_gen; typedef struct _INTERFACE_INFO { u_long iiFlags; sockaddr_gen iiAddress; sockaddr_gen iiBroadcastAddress; sockaddr_gen iiNetmask; } INTERFACE_INFO, *LPINTERFACE_INFO; # 4 "conftest.c" 2 Defined "HAVE_WS2TCPIP_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr... ... thread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 373 "/usr/include/sys/types.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/WindowsX.h" 1 3 4 # 5 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/WindowsX.h" 3 # 4 "conftest.c" 2 Defined "HAVE_WINDOWSX_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:17: dos.h: No such file or directory ret = 256 error message = {conftest.c:3:17: dos.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 14 "/usr/include/endian.h" 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 15 "/usr/include/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 14 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/sys/fcntl.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/s... ... ); int __attribute__((__cdecl__)) mkfifo ( const char *__path, mode_t __mode ); int __attribute__((__cdecl__)) stat ( const char *__path, struct stat *__sbuf ); mode_t __attribute__((__cdecl__)) umask ( mode_t __mask ); int __attribute__((__cdecl__)) lstat ( const char *__path, struct stat *__buf ); int __attribute__((__cdecl__)) mknod ( const char *__path, mode_t __mode, dev_t __dev ); # 165 "/usr/include/sys/fcntl.h" 2 3 4 extern int open (const char *, int, ...); extern int creat (const char *, mode_t); extern int fcntl (int, int, ...); # 15 "/usr/include/fcntl.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/float.h" 1 3 4 # 4 "conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/io.h" 1 3 4 # 21 "/usr/include/io.h" 3 4 extern long get_osfhandle(int); extern int setmode (int __fd, int __mode); int access(const char *__path, int __amode); # 4 "conftest.c" 2 Defined "HAVE_IO_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 1 3 4 # 11 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 ... ... 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 14 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 7 "/usr/inclu... ... nt fsmblks; int uordblks; int fordblks; int keepcost; }; extern void * malloc (size_t); extern void free (void *); extern void * realloc (void *, size_t); extern void * calloc (size_t, size_t); extern void * memalign (size_t, size_t); extern struct mallinfo mallinfo (void); extern void malloc_stats (void); extern int mallopt (int, int); extern size_t malloc_usable_size (void *); # 112 "/usr/include/malloc.h" 3 4 extern void * valloc (size_t); extern void * pvalloc (size_t); extern int malloc_trim (size_t); # 138 "/usr/include/malloc.h" 3 4 extern void mstats (char *); # 4 "conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 42 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/confi... ... attr_t {char __dummy;} *pthread_rwlockattr_t; # 373 "/usr/include/sys/types.h" 2 3 4 # 43 "/usr/include/pwd.h" 2 3 4 struct passwd { char *pw_name; char *pw_passwd; uid_t pw_uid; gid_t pw_gid; char *pw_comment; char *pw_gecos; char *pw_dir; char *pw_shell; }; struct passwd *getpwuid (uid_t); struct passwd *getpwnam (const char *); int getpwnam_r (const char *, struct passwd *, char *, size_t , struct passwd **); int getpwuid_r (uid_t, struct passwd *, char *, size_t, struct passwd **); struct passwd *getpwent (void); void setpwent (void); void endpwent (void); # 4 "conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 12 "/usr/include/search.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 13 "/usr/include/search.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config... ... *); void *tdelete (const void * __restrict, void ** __restrict, int (*) (const void *, const void *)); void tdestroy (void *, void (*)(void *)); void *tfind (const void *, void **, int (*) (const void *, const void *)); void *tsearch (const void *, void **, int (*) (const void *, const void *)); void twalk (const void *, void (*) (const void *, VISIT, int)); void *lfind (const void *, const void *, size_t *, size_t, int (*) (const void *, const void *)); void *lsearch (const void *, void *, size_t *, size_t, int (*) (const void *, const void *)); # 4 "conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/s... ... nt __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 5 "/usr/include/strings.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stropts.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:21: stropts.h: No such file or directory ret = 256 error message = {conftest.c:3:21: stropts.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 1 "/usr/include/sys/unistd.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/... ... ibute__((__cdecl__)) setdtablesize (int); useconds_t __attribute__((__cdecl__)) ualarm (useconds_t __useconds, useconds_t __interval); unsigned __attribute__((__cdecl__)) usleep (unsigned int __useconds); int __attribute__((__cdecl__)) gethostname (char *__name, size_t __len); char * __attribute__((__cdecl__)) mktemp (char *); void __attribute__((__cdecl__)) sync (void); int __attribute__((__cdecl__)) readlink (const char *__path, char *__buf, int __buflen); int __attribute__((__cdecl__)) symlink (const char *__name1, const char *__name2); # 5 "/usr/include/unistd.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/machine/endian.h" 1 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 4 "/usr/include/machine/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 12 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/... ... -cygwin/3.4.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 14 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 15 "/usr/include/sys/param.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 4 # 16 "/usr/include/sys/procfs.h" 3 4 # 1 "/usr/include/cygwin/core_dump.h" 1 3 4 # 16 "/usr/include/cygwin/core_dump.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 1 3 4 # 16 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 3 # 47 "/usr/lib/gcc/i686-pc-cygwin/3.4.... ... ead_info { DWORD tid; BOOL is_active_thread; CONTEXT thread_context; } __attribute__ ((packed)) ; struct win32_core_module_info { void* base_address; int module_name_size; char module_name[1]; } __attribute__ ((packed)) ; struct win32_pstatus { unsigned long data_type; union { struct win32_core_process_info process_info; struct win32_core_thread_info thread_info; struct win32_core_module_info module_info; } data ; } __attribute__ ((packed)) ; typedef struct win32_pstatus win32_pstatus_t ; # 17 "/usr/include/sys/procfs.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 14 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/... ... im_t rlim_max; }; struct rusage { struct timeval ru_utime; struct timeval ru_stime; long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; int getrlimit (int __resource, struct rlimit *__rlp); int setrlimit (int __resource, const struct rlimit *__rlp); int getrusage (int __who, struct rusage *__rusage); int getpriority (int which, id_t who); int setpriority (int which, id_t who, int value); # 4 "conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/in... ... "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 9 "/usr/include/sys/times.h" 2 3 4 typedef unsigned long clock_t; struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; clock_t __attribute__((__cdecl__)) times (struct tms *); # 4 "conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 18 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[20]; char nodename[20]; char release[20]; char version[20]; char machine[20]; }; int uname (struct utsname *); # 4 "conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... y (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 183 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 4 "conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 14 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 15 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # ... ... int sendmsg(int s, const struct msghdr *msg, int flags); int sendto (int, const void *, int __len, int __flags, const struct sockaddr *__to, int __tolen); int setsockopt (int __s, int __level, int __optname, const void *optval, int __optlen); int getsockopt (int __s, int __level, int __optname, void *__optval, int *__optlen); int shutdown (int, int); int socket (int __family, int __type, int __protocol); int socketpair (int __domain, int __type, int __protocol, int *__socket_vec); struct servent *getservbyname (const char *__name, const char *__proto); # 4 "conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 14 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cy... ... /usr/include/sys/wait.h" 2 3 4 # 41 "/usr/include/sys/wait.h" 3 4 pid_t wait (int *); pid_t waitpid (pid_t, int *, int); pid_t wait3 (int *__status, int __options, struct rusage *__rusage); pid_t wait4 (pid_t __pid, int *__status, int __options, struct rusage *__rusage); union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 4 "conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 14 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/cygwin/in.h" 1 3 4 # 21 "/usr/include/cygwin/in.h" 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 18 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef long int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uin... ... unsigned short int __ntohs(unsigned short int); extern __inline__ unsigned long int __constant_ntohl(unsigned long int); extern __inline__ unsigned short int __constant_ntohs(unsigned short int); extern __inline__ unsigned long int __ntohl(unsigned long int x) { __asm__("xchgb %b0,%h0\n\t" "rorl $16,%0\n\t" "xchgb %b0,%h0" :"=q" (x) : "0" (x)); return x; } extern __inline__ unsigned short int __ntohs(unsigned short int x) { __asm__("xchgb %b0,%h0" : "=q" (x) : "0" (x)); return x; } # 179 "/usr/include/cygwin/in.h" 2 3 4 # 15 "/usr/include/netinet/in.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 73 "/usr/include/netdb.h" 3 4 struct hostent { const char *h_name; char **h_aliases; short h_addrtype; short h_length; char **h_addr_list; }; struct netent { char *n_name; char **n_aliases; short n_addrtype; unsigned long n_net; }; struct servent { char *s_name; char **s_aliases; short s_port; char *s_proto; }; struct protoent { char *p_name; char **p_aliases; short p_proto; }; struct rpcent { c... ... tent *getnetent (void); struct protoent *getprotobyname (const char *); struct protoent *getprotobynumber (int); struct protoent *getprotoent (void); struct servent *getservbyname (const char *, const char *); struct servent *getservbyport (int, const char *); struct servent *getservent (void); struct rpcent *getrpcent (void); struct rpcent *getrpcbyname (const char *); struct rpcent *getrpcbynumber (int); const char *hstrerror (int); void herror (const char *); void sethostent (int); void setnetent (int); void setprotoent (int); void setservent (int); void setrpcent (int); # 4 "conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: Direct.h: No such file or directory ret = 256 error message = {conftest.c:3:20: Direct.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_... ... d, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *evp, timer_t *timerid); int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *value, struct itimerspec *ovalue); int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 1 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 4 # 13 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/winsock2.h" 1 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/winsock2.h" 3 4 # 18 "/usr/lib/gcc/i68... ... i_canonname; struct sockaddr *ai_addr; struct addrinfo *ai_next; }; # 322 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 struct sockaddr_in6_old { short sin6_family; u_short sin6_port; u_long sin6_flowinfo; struct in6_addr sin6_addr; }; typedef union sockaddr_gen{ struct sockaddr Address; struct sockaddr_in AddressIn; struct sockaddr_in6_old AddressIn6; } sockaddr_gen; typedef struct _INTERFACE_INFO { u_long iiFlags; sockaddr_gen iiAddress; sockaddr_gen iiBroadcastAddress; sockaddr_gen iiNetmask; } INTERFACE_INFO, *LPINTERFACE_INFO; # 4 "conftest.c" 2 Defined "HAVE_WS2TCPIP_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr... ... thread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 373 "/usr/include/sys/types.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/WindowsX.h" 1 3 4 # 5 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/WindowsX.h" 3 # 4 "conftest.c" 2 Defined "HAVE_WINDOWSX_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:157) TESTING: checkRecursiveMacros from config.headers(python/BuildSystem/config/headers.py:157) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: ================================================================================ TEST checkMemcmp from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:79) TESTING: checkMemcmp from config.functions(python/BuildSystem/config/functions.py:79) Check for 8-bit clean memcmp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: ================================================================================ TEST checkSysinfo from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:102) TESTING: checkSysinfo from config.functions(python/BuildSystem/config/functions.py:102) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for function sysinfo sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sysinfo' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sysinfo' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sysinfo(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sysinfo) || defined (__stub___sysinfo) choke me #else sysinfo(); #endif ; return 0; } ================================================================================ TEST checkVPrintf from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(python/BuildSystem/config/functions.py:125) Checking for function vprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'vprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char vprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_vprintf) || defined (__stub___vprintf) choke me #else vprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_VPRINTF" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: ================================================================================ TEST checkFreeReturnType from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:142) TESTING: checkFreeReturnType from config.functions(python/BuildSystem/config/functions.py:142) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:6: error: void value not ignored as it ought to be } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sbreak' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sbreak' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_task_info' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_task_info' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__ACCESS" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__GETCWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'memmove' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sigset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sigset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sigset) || defined (__stub___sigset) choke me #else sigset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__SLEEP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'snprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_snprintf) || defined (__stub___snprintf) choke me #else snprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__fullpath' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__fullpath' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__LSEEK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_stricmp' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_stricmp' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'bzero' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_bzero) || defined (__stub___bzero) choke me #else bzero(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memcpy' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memcpy' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__ACCESS" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__GETCWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'memmove' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sigset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sigset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sigset) || defined (__stub___sigset) choke me #else sigset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__SLEEP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'snprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_snprintf) || defined (__stub___snprintf) choke me #else snprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__fullpath' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__fullpath' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__LSEEK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_stricmp' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_stricmp' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'bzero' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_bzero) || defined (__stub___bzero) choke me #else bzero(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memcpy' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memcpy' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sbreak' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sbreak' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_task_info' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_task_info' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(python/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(python/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: sigfpe.h: No such file or directory ret = 256 error message = {conftest.c:3:20: sigfpe.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:19: fpxcp.h: No such file or directory ret = 256 error message = {conftest.c:3:19: fpxcp.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:27: floatingpoint.h: No such file or directory ret = 256 error message = {conftest.c:3:27: floatingpoint.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/fortranCommandLine.py:26) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(python/PETSc/utilities/fortranCommandLine.py:26) Check for the mechanism to retrieve command line arguments in Fortran Pushing language C Checking for function _gfortran_iargc sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__gfortran_iargc' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__gfortran_iargc' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _gfortran_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) choke me #else _gfortran_iargc(); #endif ; return 0; } Checking for function ipxfargc_ sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_ipxfargc_' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_ipxfargc_' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char ipxfargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) choke me #else ipxfargc_(); #endif ; return 0; } Checking for function f90_unix_MP_iargc sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_f90_unix_MP_iargc' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_f90_unix_MP_iargc' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char f90_unix_MP_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) choke me #else f90_unix_MP_iargc(); #endif ; return 0; } Checking for function PXFGETARG sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } Checking for function GETARG@16 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c:10: error: stray '@' in program conftest.c:10: error: parse error before numeric constant conftest.c:17:27: missing ')' after "defined" conftest.c:17:28: missing binary operator before token "16" conftest.c: In function `main': conftest.c:20: error: stray '@' in program conftest.c:20: error: `GETARG' undeclared (first use in this function) conftest.c:20: error: (Each undeclared identifier is reported only once conftest.c:20: error: for each function it appears in.) conftest.c:20: error: parse error before numeric constant } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char GETARG@16(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG@16(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) choke me #else GETARG@16(); #endif ; return 0; } Compile failed inside link Popping language C ================================================================================ TEST checkSizeTypes from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:42) TESTING: checkSizeTypes from config.types(python/BuildSystem/config/types.py:42) Checks for types associated with sizes, such as size_t. Checking for type: size_t sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:47) TESTING: checkFileTypes from config.types(python/BuildSystem/config/types.py:47) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkPID from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:53) TESTING: checkPID from config.types(python/BuildSystem/config/types.py:53) Checks for pid_t, and defines it if necessary Checking for type: pid_t sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:57) TESTING: checkUID from config.types(python/BuildSystem/config/types.py:57) Checks for uid_t and gid_t, and defines them if necessary sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 sys/types.h ================================================================================ TEST checkSignal from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:64) TESTING: checkSignal from config.types(python/BuildSystem/config/types.py:64) Checks the return type of signal() and defines RETSIGTYPE to that type name sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkFortranKind from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:110) TESTING: checkFortranKind from config.types(python/BuildSystem/config/types.py:110) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.F: In program `main': conftest.F:3: integer(kind=selected_int_kind(10)) i ^ Invalid declaration of or reference to symbol `selected_int_kind' at (^) [initially seen at (^)] conftest.F:4: real(kind=selected_real_kind(10)) d ^ Invalid declaration of or reference to symbol `selected_real_kind' at (^) [initially seen at (^)] In file included from conftest.F:0: conftest.F:4: warning: unused variable 'd' conftest.F:3: warning: unused variable 'i' } Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:122) TESTING: checkFortranDReal from config.types(python/BuildSystem/config/types.py:122) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o sh: Popping language FC ================================================================================ TEST checkConst from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:130) TESTING: checkConst from config.types(python/BuildSystem/config/types.py:130) Checks for working const, and if not found defines it to empty string sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:34: warning: declaration of 'x' shadows a previous local conftest.c:7: warning: shadowed declaration is here conftest.c:40: warning: declaration of 'p' shadows a previous local conftest.c:10: warning: shadowed declaration is here } Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:186) TESTING: checkEndian from config.types(python/BuildSystem/config/types.py:186) If the machine is big endian, defines WORDS_BIGENDIAN sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:9: error: `not' undeclared (first use in this function) conftest.c:9: error: (Each undeclared identifier is reported only once conftest.c:9: error: for each function it appears in.) conftest.c:9: error: parse error before "big" } Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_VOID_P" to "4" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_LONG" to "4" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:281) TESTING: checkBitsPerByte from config.types(python/BuildSystem/config/types.py:281) Determine the nubmer of bits per byte and define BITS_PER_BYTE sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST checkMath from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:176) TESTING: checkMath from config.libraries(python/BuildSystem/config/libraries.py:176) Check for sin() in libm, the math library Checking for functions ['sin', 'floor', 'log10', 'sqrt'] in library [''] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:192) TESTING: checkMathErf from config.libraries(python/BuildSystem/config/libraries.py:192) Check for erf() in libm, the math library Checking for functions ['erf'] in library [] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkDynamic from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:201) TESTING: checkDynamic from config.libraries(python/BuildSystem/config/libraries.py:201) Check for the header and libraries necessary for dynamic library manipulation Checking for functions ['dlopen'] in library ['dl'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -ldl collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -ldl collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); int main() { dlopen() ; return 0; } Popping language C Checking for header: dlfcn.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 19 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *, int); extern void *dlsym (void *, const char *); extern int dlclose (void *); extern char *dlerror (void); extern void dlfork (int); # 4 "conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST configureTimers from PETSc.utilities.timer(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(python/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_GETCLOCK PETSC_USE_DCLOCK PETSC_USE_NT_TIME. Checking for functions ['MPI_CRAY_barrier'] in library [''] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_MPI_CRAY_barrier' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_MPI_CRAY_barrier' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); int main() { MPI_CRAY_barrier() ; return 0; } Popping language C Cray-MPI test failure ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:35) TESTING: configureMissingDefines from PETSc.utilities.missing(python/PETSc/utilities/missing.py:35) Checks for limits sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:45) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(python/PETSc/utilities/missing.py:45) Checks if u_short is undefined sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `foo' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:51) TESTING: configureMissingFunctions from PETSc.utilities.missing(python/PETSc/utilities/missing.py:51) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:71) TESTING: configureMissingSignals from PETSc.utilities.missing(python/PETSc/utilities/missing.py:71) Check for missing signals, and define MISSING_ if necessary sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: ================================================================================ TEST configureMissingPrototypes from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:88) TESTING: configureMissingPrototypes from PETSc.utilities.missing(python/PETSc/utilities/missing.py:88) sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:14: warning: unused variable `err' } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:110) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(python/PETSc/utilities/missing.py:110) ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/libraryOptions.py:46) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(python/PETSc/utilities/libraryOptions.py:46) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Checking for functions ['bgl_perfctr_void'] in library [''] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_bgl_perfctr_void' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_bgl_perfctr_void' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); int main() { bgl_perfctr_void() ; return 0; } Popping language C BGL/IBM test failure Defined "USE_32BIT_INT" to "1" ================================================================================ TEST configureISColorValueType from PETSc.utilities.libraryOptions(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/libraryOptions.py:99) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(python/PETSc/utilities/libraryOptions.py:99) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_CHAR" Defined "IS_COLORING_MAX" to "255" Defined "IS_COLOR_VALUE_TYPE" to "char" ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Triangle(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.Triangle(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.TetGen(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.TetGen(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PARTY(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Matlab(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need Lgrind ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Chaco(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ccafe(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.ccafe(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need c2html ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Boost(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.Boost(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need Sowing ================================================================================ TEST configureLibrary from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:381) TESTING: configureLibrary from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:381) ================================================================================ Checking for a functional BLAS and LAPACK in IRIX Mathematics library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libcomplib.sgimath.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libcomplib.sgimath.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lcomplib.sgimath -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Another IRIX Mathematics library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libscs.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lscs collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lscs collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libscs.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lscs collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lscs collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lscs -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in IBM ESSL Mathematics library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libessl.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lessl collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lessl collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libessl.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lessl collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lessl collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lessl -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default compiler locations ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in HPUX ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libveclib.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libveclib.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default compiler locations /usr/local/lib ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/usr/local/lib/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/usr/local/lib/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default Atlas location /usr/local/lib ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/usr/local/lib/libcblas.a', '/usr/local/lib/libf77blas.a', '/usr/local/lib/libatlas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/usr/local/lib/libcblas.a', '/usr/local/lib/libf77blas.a', '/usr/local/lib/libatlas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lcblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lcblas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default Atlas location /usr/local/lib ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/usr/local/lib/libf77blas.a', '/usr/local/lib/libatlas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lf77blas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lf77blas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/usr/local/lib/libf77blas.a', '/usr/local/lib/libatlas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lf77blas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lf77blas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lf77blas -Wl,-rpath,/usr/local/lib -L/usr/local/lib -latlas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default compiler locations with G77 ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['liblapack.a', 'libblas.a', 'libg2c.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -llapack collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -llapack collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['liblapack.a', 'libblas.a', 'libg2c.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -llapack collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -llapack collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -llapack -lblas -lg2c -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in MacOSX BLAS/LAPACK library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/System/Library/Frameworks/vecLib.framework/vecLib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /System/Library/Frameworks/vecLib.framework/vecLib: No such file or directory output: ret = 256 error message = {gcc: /System/Library/Frameworks/vecLib.framework/vecLib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/System/Library/Frameworks/vecLib.framework/vecLib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /System/Library/Frameworks/vecLib.framework/vecLib: No such file or directory output: ret = 256 error message = {gcc: /System/Library/Frameworks/vecLib.framework/vecLib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /System/Library/Frameworks/vecLib.framework/vecLib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Sun sunperf BLAS/LAPACK library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libsunperf.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libsunperf.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Sun sunperf BLAS/LAPACK library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libsunperf.a', 'libF77.a', 'libM77.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libsunperf.a', 'libF77.a', 'libM77.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lF77 -lM77 -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Sun sunperf BLAS/LAPACK library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['libsunperf.a', 'libfui.a', 'libfsu.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['libsunperf.a', 'libfui.a', 'libfsu.a', 'libsunmath.a', 'libm.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsunperf collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsunperf -lfui -lfsu -lsunmath -lm -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL stdcall library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/8.0/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL stdcall library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL72/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL stdcall library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL70/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL stdcall library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL61/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_c_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_c_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_c_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Microsoft Windows, Intel MKL stdcall library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/cygdrive/c/Program\\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_s_dll.lib: No such file or directory output: ret = 256 error message = {gcc: /cygdrive/c/Program: No such file or directory gcc: Files/Intel/MKL/ia32/lib/mkl_s_dll.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o /cygdrive/c/Program\ Files/Intel/MKL/ia32/lib/mkl_s_dll.lib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in PETSc location 1 ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/home/feap/Library/blaslapack/lib/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/home/feap/Library/blaslapack/lib/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib -L/home/feap/Library/blaslapack/lib -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in PETSc location 2 ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-debug/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-debug -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-debug -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-debug -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-debug -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-debug -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-debug -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-debug/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-debug -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-debug -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-debug -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-debug -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-debug -L/home/feap/Library/blaslapack/lib/libg_c++/cygwin-c-real-debug -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in PETSc location 3 ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-debug/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-debug -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-debug -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-debug -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-debug -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-debug -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-debug -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-debug/libblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-debug -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-debug -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-debug -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-debug -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-debug -L/home/feap/Library/blaslapack/lib/libO_c++/cygwin-c-real-debug -lblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Downloading fblaslapack Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -V Executing: /home/feap/mpich2-install/bin/mpif77 -V sh: Popping language FC Found fblaslapack, do not need to download Pushing language FC Popping language FC Pushing language FC Popping language FC ================================================================================= Compiling FBLASLAPACK; this may take several minutes ================================================================================= sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;make -f tmpmakefile cleanblaslapck cleanlib; make -f tmpmakefile Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;make -f tmpmakefile cleanblaslapck cleanlib; make -f tmpmakefile sh: /usr/bin/rm -f */*.o /usr/bin/rm -f ./*.a ./*.lib make[1]: Entering directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/blas1' /home/feap/mpich2-install/bin/mpif77 -c -Wall -g dasum.f daxpy.f dcabs1.f dcopy.f ddot.f dmach.f dnrm2.f drot.f drotg.f dscal.f dswap.f dzasum.f dznrm2.f idamax.f izamax.f zaxpy.f zcopy.f zdotc.f zdotu.f zdrot.f zdscal.f zmach.f zrotg.f zscal.f zswap.f /usr/bin/ar cr ../libfblas.a dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dmach.o dnrm2.o drot.o drotg.o dscal.o dswap.o dzasum.o dznrm2.o idamax.o izamax.o zaxpy.o zcopy.o zdotc.o zdotu.o zdrot.o zdsc... ... sy2.o zggesx.o zhegvx.o zlaqps.o zlatrz.o ztgsyl.o /usr/bin/rm -f zgelsd.o zggev.o zhpgvd.o zlar1v.o zptts2.o ztzrzf.o zgelsy.o zggevx.o zhpgvx.o zlarcm.o zstegr.o zunmr3.o zgeqp3.o zgtts2.o zlacp2.o zlarrv.o ztgex2.o zunmrz.o zgesc2.o zhbgvd.o zlals0.o zlarzb.o ztgexc.o zgesdd.o zhbgvx.o zlalsa.o zlarz.o ztgsen.o zgetc2.o zheevr.o zlalsd.o zlarzt.o ztgsna.o zgges.o zhegvd.o zlaqp2.o zlatdf.o ztgsy2.o zggesx.o zhegvx.o zlaqps.o zlatrz.o ztgsyl.o make[1]: Leaving directory `/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/lapack-extra4' sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;mv -f libfblas.a libflapack.a cygwin-c-real-debug Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;mv -f libfblas.a libflapack.a cygwin-c-real-debug sh: sh: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;cp -f tmpmakefile cygwin-c-real-debug Executing: cd /home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack;cp -f tmpmakefile cygwin-c-real-debug sh: ================================================================================ Checking for a functional BLAS and LAPACK in Downloaded BLAS/LAPACK library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libfblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFBLAS" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C ================================================================================ TEST checkESSL from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:431) TESTING: checkESSL from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:431) Check for the IBM ESSL library Checking for functions ['iessl'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libflapack.a'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_iessl' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_iessl' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); int main() { iessl() ; return 0; } Popping language C ================================================================================ TEST checkMissing from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:437) TESTING: checkMissing from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:437) Check for missing LAPACK routines Checking for functions ['dgesvd'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dgeev'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dgetrf'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dpotrf'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dpotrs'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.UMFPACK(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.UMFPACK(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.babel(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.babel(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureLibrary from PETSc.packages.X11(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/X11.py:91) TESTING: configureLibrary from PETSc.packages.X11(python/PETSc/packages/X11.py:91) Checks for X windows, sets PETSC_HAVE_X11 if found, and defines X_CFLAGS, X_PRE_LIBS, X_LIBS, and X_EXTRA_LIBS sh: xmkmf Executing: xmkmf sh: imake -DUseInstalled -I/usr/X11R6/lib/X11/config sh: /usr/bin/make acfindx Executing: /usr/bin/make acfindx sh: X_INCLUDE_ROOT = /usr/X11R6/include X_USR_LIB_DIR = /usr/X11R6/lib X_LIB_DIR = /usr/X11R6/lib/X11 Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:5: warning: implicit declaration of function `XSetForeground' } Source: #include "confdefs.h" #include "conffix.h" int main() { XSetForeground(); ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/usr/X11R6/lib -lX11 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/usr/X11R6/lib -lX11 sh: Popping language C Found X11 includes and libraries Substituting "X_CFLAGS" with "-I/usr/X11R6/include" Substituting "X_LIBS" with "-L/usr/X11R6/lib -lX11" Substituting "X_PRE_LIBS" with "" Substituting "X_EXTRA_LIBS" with "" Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:479) TESTING: configureLibrary from PETSc.packages.MPI(python/PETSc/packages/MPI.py:479) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in User specified root directory MPI: [] ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['MPI_Init', 'MPI_Comm_create'] in library [] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Checking for headers User specified root directory MPI: ['/home/feap/mpich2-install/include', '/home/feap/mpich2-install/include'] ================================================================================ TEST checkInclude from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:46) TESTING: checkInclude from config.headers(python/BuildSystem/config/headers.py:46) Checks if a particular include file can be found along particular include paths sh: /home/feap/mpich2-install/bin/mpicc -E -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/home/feap/mpich2-install/include/mpi.h" 1 # 24 "/home/feap/mpich2-install/include/mpi.h" typedef int MPI_Datatype; # 95 "/home/feap/mpich2-install/include/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; # 115 "/home/feap/mpich2-install/include/mpi.h" typedef struct ADIOI_FileD *MPI_File; typedef int MPI_Op; # 187 "/home/feap/mpich2-install/include/mpi.h" typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2 } MPIR_Topo... ... st *, int *, MPI_Status *); int PMPI_Wait(MPI_Request *, MPI_Status *); int PMPIO_Testall(int, MPI_Request *, int *, MPI_Status *); int PMPIO_Waitall(int, MPI_Request *, MPI_Status *); int PMPIO_Testany(int, MPI_Request *, int *, int *, MPI_Status *); int PMPIO_Waitany(int, MPI_Request *, int *, MPI_Status *); int PMPIO_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *); int PMPIO_Testsome(int, MPI_Request *, int *, int *, MPI_Status *); MPI_Fint PMPIO_Request_c2f(MPI_Request); MPI_Request PMPIO_Request_f2c(MPI_Fint); # 1105 "/home/feap/mpich2-install/include/mpi.h" 2 # 4 "conftest.c" 2 Found header files ['mpi.h'] in ['/home/feap/mpich2-install/include', '/home/feap/mpich2-install/include'] ================================================================================ TEST configureConversion from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:152) TESTING: configureConversion from PETSc.packages.MPI(python/PETSc/packages/MPI.py:152) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Defined "HAVE_MPI_COMM_F2C" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Defined "HAVE_MPI_COMM_C2F" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureTypes from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:172) TESTING: configureTypes from PETSc.packages.MPI(python/PETSc/packages/MPI.py:172) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMissingPrototypes from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:199) TESTING: configureMissingPrototypes from PETSc.packages.MPI(python/PETSc/packages/MPI.py:199) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:450) TESTING: SGIMPICheck from PETSc.packages.MPI(python/PETSc/packages/MPI.py:450) Returns true if SGI MPI is used Checking for functions ['MPI_SGI_barrier'] in library [] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_MPI_SGI_barrier' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_MPI_SGI_barrier' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); int main() { MPI_SGI_barrier() ; return 0; } Popping language C SGI MPI test failure ================================================================================ TEST FortranMPICheck from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:460) TESTING: FortranMPICheck from PETSc.packages.MPI(python/PETSc/packages/MPI.py:460) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h Checking for functions [''] in library [] [] Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Popping language FC Checking for fortran mpi_init() Checking for functions [''] in library [] [] Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Popping language FC Popping language FC ================================================================================ TEST checkSharedLibrary from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:110) TESTING: checkSharedLibrary from PETSc.packages.MPI(python/PETSc/packages/MPI.py:110) Check that the libraries for MPI are shared libraries ================================================================================ TEST configureMPIRUN from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:122) TESTING: configureMPIRUN from PETSc.packages.MPI(python/PETSc/packages/MPI.py:122) Checking for mpirun Pushing language C Popping language C Checking for program /home/feap/mpich2-install/bin/mpiexec...found Defined make macro "MPIRUN" to "/home/feap/mpich2-install/bin/mpiexec " sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a Executing: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a Executing: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: /home/feap/mpich2-install/bin/mpiexec -np 1 ./conftest.exe sh: /home/feap/mpich2-install/bin/mpiexec -np 1 ./conftest.exe Executing: /home/feap/mpich2-install/bin/mpiexec -np 1 ./conftest.exe sh: ERROR while running executable: Could not execute '/home/feap/mpich2-install/bin/mpiexec -np 1 ./conftest.exe': Could not open lib1.so: Permission denied Library was not shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sundials(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.sundials(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spooles(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.spooles(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spai(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.spai(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PLAPACK(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.PLAPACK(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ParMetis(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.ParMetis(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Prometheus(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.Prometheus(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MPE(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.MPE(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ml(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.ml(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.hypre(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.hypre(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.blopex(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.blopex(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.blacs(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.blacs(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SCALAPACK(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.SCALAPACK(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MUMPS(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.MUMPS(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureRegression from PETSc.utilities.Regression(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/Regression.py:31) TESTING: configureRegression from PETSc.utilities.Regression(python/PETSc/utilities/Regression.py:31) Output a file listing the jobs that should be run by the PETSc buildtest ================================================================================ TEST configurePythonLanguage from PETSc.utilities.python(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/python.py:93) TESTING: configurePythonLanguage from PETSc.utilities.python(python/PETSc/utilities/python.py:93) Download the Python bindings into src/python ================================================================================ TEST configureInline from PETSc.Configure(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/Configure.py:204) TESTING: configureInline from PETSc.Configure(python/PETSc/Configure.py:204) Get a generic inline keyword, depending on the language Defined "STATIC_INLINE" to "static inline" Defined "RESTRICT" to " __restrict__" ================================================================================ TEST configureSolaris from PETSc.Configure(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/Configure.py:214) TESTING: configureSolaris from PETSc.Configure(python/PETSc/Configure.py:214) Solaris specific stuff ================================================================================ TEST configureLinux from PETSc.Configure(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/Configure.py:228) TESTING: configureLinux from PETSc.Configure(python/PETSc/Configure.py:228) Linux specific stuff ================================================================================ TEST configureWin32 from PETSc.Configure(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/Configure.py:234) TESTING: configureWin32 from PETSc.Configure(python/PETSc/Configure.py:234) Win32 non-cygwin specific stuff Checking for functions ['GetComputerName'] in library ['Kernel32.lib'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Kernel32.lib Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Kernel32.lib sh: Possible ERROR while running linker: gcc: Kernel32.lib: No such file or directory output: ret = 256 error message = {gcc: Kernel32.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Kernel32.lib Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetComputerName(NULL,NULL);; return 0; } Popping language C Checking for functions ['GetComputerName'] in library ['kernel32'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lkernel32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lkernel32 sh: Popping language C Adding ['kernel32'] to LIBS Defined "HAVE_WINDOWS_H" to "1" Defined "HAVE_GETCOMPUTERNAME" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lkernel32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lkernel32 sh: Defined "HAVE_GETPROCADDRESS" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lkernel32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lkernel32 sh: Defined "HAVE_LOADLIBRARY" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lkernel32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lkernel32 sh: Defined "USE_NT_TIME" to "1" Checking for functions ['GetUserName'] in library ['Advapi32.lib'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Advapi32.lib -lkernel32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Advapi32.lib -lkernel32 sh: Possible ERROR while running linker: gcc: Advapi32.lib: No such file or directory output: ret = 256 error message = {gcc: Advapi32.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Advapi32.lib -lkernel32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetUserName(NULL,NULL);; return 0; } Popping language C Checking for functions ['GetUserName'] in library ['advapi32'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -ladvapi32 -lkernel32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -ladvapi32 -lkernel32 sh: Popping language C Adding ['advapi32'] to LIBS Defined "HAVE_GET_USER_NAME" to "1" Checking for functions ['GetDC'] in library ['User32.lib'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o User32.lib -ladvapi32 -lkernel32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o User32.lib -ladvapi32 -lkernel32 sh: Possible ERROR while running linker: gcc: User32.lib: No such file or directory output: ret = 256 error message = {gcc: User32.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o User32.lib -ladvapi32 -lkernel32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetDC(0);; return 0; } Popping language C Checking for functions ['GetDC'] in library ['user32'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -luser32 -ladvapi32 -lkernel32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -luser32 -ladvapi32 -lkernel32 sh: Popping language C Adding ['user32'] to LIBS Checking for functions ['CreateCompatibleDC'] in library ['Gdi32.lib'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Gdi32.lib -luser32 -ladvapi32 -lkernel32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Gdi32.lib -luser32 -ladvapi32 -lkernel32 sh: Possible ERROR while running linker: gcc: Gdi32.lib: No such file or directory output: ret = 256 error message = {gcc: Gdi32.lib: No such file or directory } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Gdi32.lib -luser32 -ladvapi32 -lkernel32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { CreateCompatibleDC(0);; return 0; } Popping language C Checking for functions ['CreateCompatibleDC'] in library ['gdi32'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lgdi32 -luser32 -ladvapi32 -lkernel32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lgdi32 -luser32 -ladvapi32 -lkernel32 sh: Popping language C Adding ['gdi32'] to LIBS sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `u' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; ; return 0; } sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:8: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lgdi32 -luser32 -ladvapi32 -lkernel32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lgdi32 -luser32 -ladvapi32 -lkernel32 sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lgdi32 -luser32 -ladvapi32 -lkernel32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lgdi32 -luser32 -ladvapi32 -lkernel32 sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:7: warning: unused variable `b' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } Defined "HAVE_LARGE_INTEGER_U" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Defined "HAVE_O_BINARY" to "1" Defined "PATH_SEPARATOR" to "':'" Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" ================================================================================ TEST configureDefaults from PETSc.Configure(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/Configure.py:291) TESTING: configureDefaults from PETSc.Configure(python/PETSc/Configure.py:291) ================================================================================ TEST configureScript from PETSc.Configure(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/Configure.py:302) TESTING: configureScript from PETSc.Configure(python/PETSc/Configure.py:302) Output a script in the bmake directory which will reproduce the configuration ================================================================================ TEST configureInstall from PETSc.Configure(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/Configure.py:330) TESTING: configureInstall from PETSc.Configure(python/PETSc/Configure.py:330) Setup the directories for installation ================================================================================ TEST configureGCOV from PETSc.Configure(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/Configure.py:338) TESTING: configureGCOV from PETSc.Configure(python/PETSc/Configure.py:338) Pushing language C Defined make macro "CC_FLAGS" to " -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 " Popping language C Defined make macro "CPP_FLAGS" to "" Pushing language C Defined make macro "PCC" to "/home/feap/mpich2-install/bin/mpicc" Defined make macro "PCC_FLAGS" to " -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 " Popping language C Defined make macro "CC_SUFFIX" to "o" Pushing language C Defined make macro "PCC_LINKER" to "/home/feap/mpich2-install/bin/mpicc" Defined make macro "PCC_LINKER_FLAGS" to " -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 " Popping language C Defined make macro "CC_LINKER_SUFFIX" to "" Defined make macro "PCC_LINKER_LIBS" to "-L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -lgdi32 -luser32 -ladvapi32 -lkernel32 " Pushing language FC Defined "HAVE_FORTRAN" to "1" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to " -Wall -g " Popping language FC Defined make macro "FC_SUFFIX" to "o" Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -V Executing: /home/feap/mpich2-install/bin/mpif77 -V sh: Defined make macro "FC_LINKER" to "/home/feap/mpich2-install/bin/mpif77" Defined make macro "FC_LINKER_FLAGS" to " -Wall -g " Popping language FC Defined make macro "FC_LINKER_SUFFIX" to "" Defined make macro "FC_LINKER_LIBS" to "-L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -lgdi32 -luser32 -ladvapi32 -lkernel32 " Pushing language C Defined make macro "SL_LINKER" to "/home/feap/mpich2-install/bin/mpicc" Defined make macro "SL_LINKER_FLAGS" to " -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 " Popping language C Defined make macro "SL_LINKER_SUFFIX" to "" sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 Defined make macro "SL_LINKER_LIBS" to "-L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -lgdi32 -luser32 -ladvapi32 -lkernel32 " Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" sh: CC -V Executing: CC -V sh: Defined "USE_SOCKET_VIEWER" to "1" Defined "HAVE_MPI" to "1" Defined make macro "MPI_LIB" to "" Defined make macro "MPI_INCLUDE" to "-I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include" Defined "HAVE_X11" to "1" Defined make macro "X11_LIB" to "-L/usr/X11R6/lib -lX11" Defined make macro "X11_INCLUDE" to "-I/usr/X11R6/include" Defined "HAVE_BLASLAPACK" to "1" Defined make macro "BLASLAPACK_LIB" to "-Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas" Defined make macro "BLASLAPACK_INCLUDE" to "" Defined make macro "PACKAGES_LIBS" to "${MPI_LIB} ${X11_LIB} ${BLASLAPACK_LIB}" Defined make macro "INSTALL_DIR" to "/home/feap/Library/petsc-2.3.1-p5" Defined make macro "top_builddir" to "/home/feap/Library/petsc-2.3.1-p5" Defined make macro "CONFIGURE_OPTIONS" to "--with-mpi-dir=/home/feap/mpich2-install --download-f-blas-lapack=ifneeded --useThreads=0 --with-shared=0" ================================================================================ Pushing language C Popping language C Pushing language FC Popping language FC Compilers: C Compiler: /home/feap/mpich2-install/bin/mpicc -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 Fortran Compiler: /home/feap/mpich2-install/bin/mpif77 -Wall -g Linkers: Static linker: /usr/bin/ar cr Dynamic linker: /home/feap/mpich2-install/bin/mpicc -shared -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 PETSc: ** ** Before running "make" your PETSC_ARCH must be specified with: ** ** setenv PETSC_ARCH cygwin-c-real-debug (csh/tcsh) ** ** PETSC_ARCH=cygwin-c-real-debug; export PETSC_ARCH (sh/bash) ** PETSC_DIR: /home/feap/Library/petsc-2.3.1-p5 ** ** Now build and test the libraries with "make all test" ** Scalar type:real Clanguage: C MPI: Includes: ['/home/feap/mpich2-install/include', '/home/feap/mpich2-install/include'] X11: Includes: ['-I/usr/X11R6/include'] Library: ['-L/usr/X11R6/lib -lX11'] PETSc shared libraries: disabled PETSc dynamic libraries: disabled BLAS/LAPACK: -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas **** bmake/cygwin-c-real-debug/petscconf **** AR_FLAGS = cr PETSC_LANGUAGE = CONLY FC_LINKER_FLAGS = -Wall -g SL_LINKER = /home/feap/mpich2-install/bin/mpicc CC_FLAGS = -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 PETSC_PRECISION = double INSTALL_DIR = /home/feap/Library/petsc-2.3.1-p5 PACKAGES_LIBS = ${MPI_LIB} ${X11_LIB} ${BLASLAPACK_LIB} FC_FLAGS = -Wall -g BLASLAPACK_LIB = -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas FC_LINKER_SUFFIX = PCC = /home/feap/mpich2-install/bin/mpicc SL_LINKER_LIBS = -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -lgdi32 -luser32 -ladvapi32 -lkernel32 MPI_LIB = SL_LINKER_FLAGS = -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 CC_SUFFIX = o CONFIGURE_OPTIONS = --with-mpi-dir=/home/feap/mpich2-install --download-f-blas-lapack=ifneeded --useThreads=0 --with-shared=0 PETSC_SCALAR = real CPP_FLAGS = FPP_FLAGS = X11_LIB = -L/usr/X11R6/lib -lX11 FC_LINKER = /home/feap/mpich2-install/bin/mpif77 PCC_LINKER = /home/feap/mpich2-install/bin/mpicc PCC_LINKER_FLAGS = -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 PCC_FLAGS = -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 PCC_LINKER_LIBS = -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -lgdi32 -luser32 -ladvapi32 -lkernel32 FC_LINKER_LIBS = -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -lgdi32 -luser32 -ladvapi32 -lkernel32 BLASLAPACK_INCLUDE = CC_LINKER_SUFFIX = SL_LINKER_SUFFIX = X11_INCLUDE = -I/usr/X11R6/include MPI_INCLUDE = -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include top_builddir = /home/feap/Library/petsc-2.3.1-p5 FC_SUFFIX = o CC = /home/feap/mpich2-install/bin/mpicc RANLIB = /usr/bin/ranlib DYNAMICLINKER = /home/feap/mpich2-install/bin/mpicc CC_LINKER_SLFLAG = -Wl,-rpath, FC = /home/feap/mpich2-install/bin/mpif77 FC_LINKER_SLFLAG = -Wl,-rpath, CPP = /home/feap/mpich2-install/bin/mpicc -E AR_LIB_SUFFIX = a LD_SHARED = /usr/bin/ar AR = /usr/bin/ar DIR = /home/feap/Library/petsc-2.3.1-p5 DATAFILESPATH = OMAKE = /usr/bin/make --no-print-directory MAKE = /usr/bin/make SHELL = /usr/bin/sh GREP = /usr/bin/grep MV = /usr/bin/mv MKDIR = /usr/bin/mkdir -p SED = /usr/bin/sed DIFF = /usr/bin/diff -w GZIP = /usr/bin/gzip RM = /usr/bin/rm -f CP = /usr/bin/cp SVN = svn MPIRUN = /home/feap/mpich2-install/bin/mpiexec BUILDSHAREDLIB = no **** bmake/cygwin-c-real-debug/petscrules **** .F.a: -${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .f.a: -${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .F.o .F90.o: -${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $< .f.o .f90.o: -${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $< libc: ${LIBNAME}(${OBJSC} ${SOBJSC}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} shared_arch: **** bmake/cygwin-c-real-debug/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef IS_COLORING_MAX #define IS_COLORING_MAX 255 #endif #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef MPIU_COLORING_VALUE #define MPIU_COLORING_VALUE MPI_UNSIGNED_CHAR #endif #ifndef PETSC_HAVE_WINDOWS_H #define PETSC_HAVE_WINDOWS_H 1 #endif #ifndef PETSC_USE_NT_TIME #define PETSC_USE_NT_TIME 1 #endif #ifndef PETSC_HAVE_GETPROCADDRESS #define PETSC_HAVE_GETPROCADDRESS 1 #endif #ifndef PETSC_PATH_SEPARATOR #define PETSC_PATH_SEPARATOR ':' #endif #ifndef PETSC_DIR_SEPARATOR #define PETSC_DIR_SEPARATOR '/' #endif #ifndef PETSC_HAVE_LOADLIBRARY #define PETSC_HAVE_LOADLIBRARY 1 #endif #ifndef PETSC_STATIC_INLINE #define PETSC_STATIC_INLINE static inline #endif #ifndef PETSC_REPLACE_DIR_SEPARATOR #define PETSC_REPLACE_DIR_SEPARATOR '\\' #endif #ifndef PETSC_HAVE_LARGE_INTEGER_U #define PETSC_HAVE_LARGE_INTEGER_U 1 #endif #ifndef PETSC_RESTRICT #define PETSC_RESTRICT __restrict__ #endif #ifndef PETSC_HAVE_X11 #define PETSC_HAVE_X11 1 #endif #ifndef PETSC_HAVE_MPI #define PETSC_HAVE_MPI 1 #endif #ifndef PETSC_USE_SOCKET_VIEWER #define PETSC_USE_SOCKET_VIEWER 1 #endif #ifndef PETSC_HAVE_GET_USER_NAME #define PETSC_HAVE_GET_USER_NAME 1 #endif #ifndef PETSC_HAVE_BLASLAPACK #define PETSC_HAVE_BLASLAPACK 1 #endif #ifndef PETSC_HAVE_FORTRAN #define PETSC_HAVE_FORTRAN 1 #endif #ifndef PETSC_HAVE_GETCOMPUTERNAME #define PETSC_HAVE_GETCOMPUTERNAME 1 #endif #ifndef PETSC_HAVE_O_BINARY #define PETSC_HAVE_O_BINARY 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_ENDIAN_H #define PETSC_HAVE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_SYS_PROCFS_H #define PETSC_HAVE_SYS_PROCFS_H 1 #endif #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_HAVE_MACHINE_ENDIAN_H #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_WS2TCPIP_H #define PETSC_HAVE_WS2TCPIP_H 1 #endif #ifndef PETSC_TIME_WITH_SYS_TIME #define PETSC_TIME_WITH_SYS_TIME 1 #endif #ifndef PETSC_HAVE_SYS_PARAM_H #define PETSC_HAVE_SYS_PARAM_H 1 #endif #ifndef PETSC_HAVE_SYS_SOCKET_H #define PETSC_HAVE_SYS_SOCKET_H 1 #endif #ifndef PETSC_HAVE_UNISTD_H #define PETSC_HAVE_UNISTD_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SYS_WAIT_H #define PETSC_HAVE_SYS_WAIT_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_NETINET_IN_H #define PETSC_HAVE_NETINET_IN_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_SYS_RESOURCE_H #define PETSC_HAVE_SYS_RESOURCE_H 1 #endif #ifndef PETSC_HAVE_SYS_TIMES_H #define PETSC_HAVE_SYS_TIMES_H 1 #endif #ifndef PETSC_HAVE_NETDB_H #define PETSC_HAVE_NETDB_H 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_PWD_H #define PETSC_HAVE_PWD_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_STRINGS_H #define PETSC_HAVE_STRINGS_H 1 #endif #ifndef PETSC_HAVE_WINDOWSX_H #define PETSC_HAVE_WINDOWSX_H 1 #endif #ifndef PETSC_HAVE_IO_H #define PETSC_HAVE_IO_H 1 #endif #ifndef PETSC_HAVE_SYS_TIME_H #define PETSC_HAVE_SYS_TIME_H 1 #endif #ifndef PETSC_HAVE_SYS_UTSNAME_H #define PETSC_HAVE_SYS_UTSNAME_H 1 #endif #ifndef PETSC_PRINTF_FORMAT_CHECK #define PETSC_PRINTF_FORMAT_CHECK(A,B) __attribute__((format (printf, A, B))) #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_FORTRAN_UNDERSCORE #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_RTLD_GLOBAL #define PETSC_HAVE_RTLD_GLOBAL 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict__ #endif #ifndef PETSC_HAVE_FORTRAN_UNDERSCORE_UNDERSCORE #define PETSC_HAVE_FORTRAN_UNDERSCORE_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_LIBFLAPACK #define PETSC_HAVE_LIBFLAPACK 1 #endif #ifndef PETSC_HAVE_ERF #define PETSC_HAVE_ERF 1 #endif #ifndef PETSC_HAVE_LIBFBLAS #define PETSC_HAVE_LIBFBLAS 1 #endif #ifndef PETSC_ARCH_NAME #define PETSC_ARCH_NAME "cygwin-c-real-debug" #endif #ifndef PETSC_ARCH #define PETSC_ARCH cygwin #endif #ifndef PETSC_DIR #define PETSC_DIR /home/feap/Library/petsc-2.3.1-p5 #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_EXTERN_CXX #define PETSC_USE_EXTERN_CXX #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_SIZEOF_MPI_COMM #define PETSC_SIZEOF_MPI_COMM 4 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_MPI_FINT #define PETSC_SIZEOF_MPI_FINT 4 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 4 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 4 #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_HAVE_POPEN #define PETSC_HAVE_POPEN 1 #endif #ifndef PETSC_HAVE_GETWD #define PETSC_HAVE_GETWD 1 #endif #ifndef PETSC_HAVE_TIMES #define PETSC_HAVE_TIMES 1 #endif #ifndef PETSC_HAVE__SLEEP #define PETSC_HAVE__SLEEP 1 #endif #ifndef PETSC_HAVE_GETPWUID #define PETSC_HAVE_GETPWUID 1 #endif #ifndef PETSC_HAVE_GETHOSTBYNAME #define PETSC_HAVE_GETHOSTBYNAME 1 #endif #ifndef PETSC_HAVE_SLEEP #define PETSC_HAVE_SLEEP 1 #endif #ifndef PETSC_HAVE_DLERROR #define PETSC_HAVE_DLERROR 1 #endif #ifndef PETSC_HAVE__GETCWD #define PETSC_HAVE__GETCWD 1 #endif #ifndef PETSC_HAVE_FORK #define PETSC_HAVE_FORK 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE_GETTIMEOFDAY #define PETSC_HAVE_GETTIMEOFDAY 1 #endif #ifndef PETSC_HAVE_UNAME #define PETSC_HAVE_UNAME 1 #endif #ifndef PETSC_HAVE__LSEEK #define PETSC_HAVE__LSEEK 1 #endif #ifndef PETSC_HAVE_GETHOSTNAME #define PETSC_HAVE_GETHOSTNAME 1 #endif #ifndef PETSC_HAVE_MKSTEMP #define PETSC_HAVE_MKSTEMP 1 #endif #ifndef PETSC_HAVE_SIGACTION #define PETSC_HAVE_SIGACTION 1 #endif #ifndef PETSC_HAVE_DRAND48 #define PETSC_HAVE_DRAND48 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE_GETRUSAGE #define PETSC_HAVE_GETRUSAGE 1 #endif #ifndef PETSC_HAVE_MEMALIGN #define PETSC_HAVE_MEMALIGN 1 #endif #ifndef PETSC_HAVE_GETDOMAINNAME #define PETSC_HAVE_GETDOMAINNAME 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_HAVE_READLINK #define PETSC_HAVE_READLINK 1 #endif #ifndef PETSC_HAVE_REALPATH #define PETSC_HAVE_REALPATH 1 #endif #ifndef PETSC_HAVE__ACCESS #define PETSC_HAVE__ACCESS 1 #endif #ifndef PETSC_HAVE_SNPRINTF #define PETSC_HAVE_SNPRINTF 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_BZERO #define PETSC_HAVE_BZERO 1 #endif #ifndef PETSC_HAVE__SNPRINTF #define PETSC_HAVE__SNPRINTF 1 #endif #ifndef PETSC_HAVE_GETPAGESIZE #define PETSC_HAVE_GETPAGESIZE 1 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_USE_DEBUG #define PETSC_USE_DEBUG 1 #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE char #endif #ifndef PETSC_USE_32BIT_INT #define PETSC_USE_32BIT_INT 1 #endif #ifndef PETSC_HAVE_GZIP #define PETSC_HAVE_GZIP 1 #endif #ifndef PETSC_HAVE_MPI_COMM_C2F #define PETSC_HAVE_MPI_COMM_C2F 1 #endif #ifndef PETSC_HAVE_MPI_COMM_F2C #define PETSC_HAVE_MPI_COMM_F2C 1 #endif #ifndef PETSC_HAVE_MPI_FINT #define PETSC_HAVE_MPI_FINT 1 #endif #endif **** bmake/cygwin-c-real-debug/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif Python Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- PETSc: File creation : Generated list of jobs for testing in bmake/cygwin-c-real-debug/jobs File creation : Generated list of jobs for testing in bmake/cygwin-c-real-debug/ejobs File creation : Generated list of jobs for testing in bmake/cygwin-c-real-debug/rjobs Build : Set default architecture to cygwin-c-real-debug in bmake/petscconf File creation : Created bmake/cygwin-c-real-debug/configure.py for automatic reconfiguration Framework: File creation : Created makefile configure header bmake/cygwin-c-real-debug/petscconf File creation : Created makefile configure header bmake/cygwin-c-real-debug/petscconf File creation : Created configure header bmake/cygwin-c-real-debug/petscconf.h File creation : Created C specific configure header bmake/cygwin-c-real-debug/petscfix.h Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ** Cygwin-python-2.4 detected. Threads do not work correctly with this version * ********* Disabling thread usage for this run of config/configure.py ********** ================================================================================ ================================================================================ ================================================================================ Starting Configure Run at Mon Feb 20 23:48:20 2006 Configure Options: --with-blas-lapack-dir=/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug --with-mpi-dir=/home/feap/mpich2-install --with-debugging=1 --download-parmetis=1 --download-prometheus=1 --useThreads=0 --with-shared=0 --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions Working directory: /home/feap/Library/petsc-2.3.1-p5 Python version: 2.4.1 (#1, May 27 2005, 18:02:40) [GCC 3.3.3 (cygwin special)] ================================================================================ Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureLibrary from PETSc.packages.PVODE(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.PVODE(python/PETSc/packages/PVODE.py:10) Find a PVODE installation and check if it can work with PETSc ================================================================================ TEST configureLibrary from PETSc.packages.NetCDF(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/NetCDF.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(python/PETSc/packages/NetCDF.py:10) Find a NetCDF installation and check if it can work with PETSc ================================================================================ TEST configureBitKeeper from config.sourceControl(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/sourceControl.py:23) TESTING: configureBitKeeper from config.sourceControl(python/BuildSystem/config/sourceControl.py:23) Find the BitKeeper executable Checking for program /home/feap/mpich2-install/bin/bk...not found Checking for program /usr/local/bin/bk...not found Checking for program /usr/bin/bk...not found Checking for program /bin/bk...not found Checking for program /usr/X11R6/bin/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/bk...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/bk...not found Checking for program /cygdrive/c/WINDOWS/system32/bk...not found Checking for program /cygdrive/c/WINDOWS/bk...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/bk...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/bk...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/bk...not found Checking for program /cygdrive/c/backup/4print/bk...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/bk...not found Checking for program ./bk...not found Checking for program /bin/bk...not found Checking for program /home/feap/bk...not found ================================================================================ TEST configureCVS from config.sourceControl(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/sourceControl.py:30) TESTING: configureCVS from config.sourceControl(python/BuildSystem/config/sourceControl.py:30) Find the CVS executable Checking for program /home/feap/mpich2-install/bin/cvs...not found Checking for program /usr/local/bin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /bin/cvs...not found Checking for program /usr/X11R6/bin/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/cvs...not found Checking for program /cygdrive/c/WINDOWS/system32/cvs...not found Checking for program /cygdrive/c/WINDOWS/cvs...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/cvs...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/cvs...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/cvs...not found Checking for program /cygdrive/c/backup/4print/cvs...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/cvs...not found Checking for program ./cvs...not found Checking for program /bin/cvs...not found Checking for program /home/feap/cvs...not found ================================================================================ TEST configureSubversion from config.sourceControl(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/sourceControl.py:35) TESTING: configureSubversion from config.sourceControl(python/BuildSystem/config/sourceControl.py:35) Find the Subversion executable Checking for program /home/feap/mpich2-install/bin/svn...not found Checking for program /usr/local/bin/svn...not found Checking for program /usr/bin/svn...found Defined make macro "SVN" to "svn" ================================================================================ TEST configureMkdir from PETSc.utilities.programs(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/programs.py:21) TESTING: configureMkdir from PETSc.utilities.programs(python/PETSc/utilities/programs.py:21) Make sure we can have mkdir automatically make intermediate directories Checking for program /home/feap/mpich2-install/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found sh: /usr/bin/mkdir -p .conftest/tmp Executing: /usr/bin/mkdir -p .conftest/tmp sh: Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configurePrograms from PETSc.utilities.programs(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/programs.py:39) TESTING: configurePrograms from PETSc.utilities.programs(python/PETSc/utilities/programs.py:39) Check for the programs needed to build and run PETSc Checking for program /home/feap/mpich2-install/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /home/feap/mpich2-install/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Checking for program /home/feap/mpich2-install/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /home/feap/mpich2-install/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /home/feap/mpich2-install/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /home/feap/mpich2-install/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /home/feap/mpich2-install/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found sh: /usr/bin/diff -w diff1 diff2 Executing: /usr/bin/diff -w diff1 diff2 sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/feap/ps...not found Checking for program /home/feap/mpich2-install/bin/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" ================================================================================ TEST configureMake from PETSc.utilities.Make(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/Make.py:21) TESTING: configureMake from PETSc.utilities.Make(python/PETSc/utilities/Make.py:21) Check various things about make Checking for program /home/feap/mpich2-install/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" sh: strings /usr/bin/make Executing: strings /usr/bin/make sh: Make check failed: Could not execute 'strings /usr/bin/make': strings: /usr/bin/make: No such file or directory sh: strings /usr/bin/make.exe Executing: strings /usr/bin/make.exe sh: attempt to use unsupported feature: `%s' touch: Archive `%s' does not exist touch: touch: `%s' is not a valid archive touch: Member `%s' does not exist in `%s' touch: Bad return code from ar_member_touch on `%s' [^_] [^_] ! ARFILENAMES/ WVS1 [^_] .SUFFIXES [^_] $(MAKE) ${MAKE} [^_] +t&C @u,A kill *** [%s] Archive member `%s' may be bogus; not deleted *** Archive member `%s' may be bogus; not deleted *** [%s] Deleting file `%s' unlink: *** Deleting file `%s' $P)@ # commands to execute (built-in): %.*s (from `%s', line %lu): $-,@ $:,@ $A,@ $(AR) $(ARFLAGS) $@ $< %.out @rm -f $@ cp ... ... xecvp exit fclose fcntl fdopen fflush fgets fopen fprintf fputs fread free fstat fwrite getcwd getenv getlogin getpid getpwnam kill localtime lseek lstat malloc memcpy memmove memset mkstemp open opendir pipe printf putc puts qsort read readdir realloc remove setlocale setvbuf sigaction sigaddset sigemptyset signal sigprocmask sprintf sscanf stat strcasecmp strcat strchr strcmp strcpy strdup strerror strlen strncasecmp strncmp strrchr strsignal strtoul time unlink vfork vfprintf wait waitpid write libintl_bindtextdomain libintl_gettext libintl_textdomain KERNEL32.dll cygwin1.dll cygintl-2.dll Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC} ${SOBJSC})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(python/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /home/feap/mpich2-install/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...not found Checking for program /bin/gdb...not found Checking for program /usr/X11R6/bin/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/gdb...not found Checking for program /cygdrive/c/WINDOWS/system32/gdb...not found Checking for program /cygdrive/c/WINDOWS/gdb...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/gdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/gdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/gdb...not found Checking for program /cygdrive/c/backup/4print/gdb...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/gdb...not found Checking for program ./gdb...not found Checking for program /bin/gdb...not found Checking for program /home/feap/gdb...not found Checking for program /home/feap/mpich2-install/bin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/dbx...not found Checking for program /cygdrive/c/WINDOWS/system32/dbx...not found Checking for program /cygdrive/c/WINDOWS/dbx...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/dbx...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/dbx...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/dbx...not found Checking for program /cygdrive/c/backup/4print/dbx...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/dbx...not found Checking for program ./dbx...not found Checking for program /bin/dbx...not found Checking for program /home/feap/dbx...not found Checking for program /home/feap/mpich2-install/bin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Tools/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/Common/Msdev98/BIN/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/DF98/BIN/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio/VC98/BIN/xdb...not found Checking for program /cygdrive/c/WINDOWS/system32/xdb...not found Checking for program /cygdrive/c/WINDOWS/xdb...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/xdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Adaptec Shared/System/xdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Autodesk Shared/xdb...not found Checking for program /cygdrive/c/backup/4print/xdb...not found Checking for program /cygdrive/c/Program Files/MATLAB704/bin/win32/xdb...not found Checking for program ./xdb...not found Checking for program /bin/xdb...not found Checking for program /home/feap/xdb...not found ================================================================================ TEST configureScalarType from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:32) TESTING: configureScalarType from PETSc.utilities.languages(python/PETSc/utilities/languages.py:32) Choose between real and complex numbers Scalar type is real ================================================================================ TEST configurePrecision from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:42) TESTING: configurePrecision from PETSc.utilities.languages(python/PETSc/utilities/languages.py:42) Set the default real number precision for PETSc objects Precision is double ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:65) TESTING: configureCLanguage from PETSc.utilities.languages(python/PETSc/utilities/languages.py:65) Choose between C and C++ bindings Allowing C++ name mangling C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureExternC from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:87) TESTING: configureExternC from PETSc.utilities.languages(python/PETSc/utilities/languages.py:87) Protect C bindings from C++ mangling Defined "USE_EXTERN_CXX" to " " ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/languages.py:93) TESTING: configureFortranLanguage from PETSc.utilities.languages(python/PETSc/utilities/languages.py:93) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/petscdir.py:35) TESTING: configureDirectories from PETSc.utilities.petscdir(python/PETSc/utilities/petscdir.py:35) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 2 #define PETSC_VERSION_MINOR 3 #define PETSC_VERSION_SUBMINOR 1 #define PETSC_VERSION_PATCH 5 #define PETSC_VERSION_DATE "February, 3, 2006" #define PETSC_VERSION_PATCH_DATE "Sat Feb 11 20:02:43 CST 2006" #define PETSC_VERSION_BK "balay@asterix.mcs.anl.gov|ChangeSet|20060212020213|15075" Defined make macro "DIR" to "/home/feap/Library/petsc-2.3.1-p5" Defined "DIR" to "/home/feap/Library/petsc-2.3.1-p5" sh: /bin/sh /home/feap/Library/petsc-2.3.1-p5/bin/config/config.guess Executing: /bin/sh /home/feap/Library/petsc-2.3.1-p5/bin/config/config.guess sh: i686-pc-cygwin sh: /bin/sh /home/feap/Library/petsc-2.3.1-p5/bin/config/config.sub i686-pc-cygwin Executing: /bin/sh /home/feap/Library/petsc-2.3.1-p5/bin/config/config.sub i686-pc-cygwin sh: i686-pc-cygwin ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/petscdir.py:113) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(python/PETSc/utilities/petscdir.py:113) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/petscdir.py:120) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(python/PETSc/utilities/petscdir.py:120) This is a tarball installation ================================================================================ TEST configureETags from PETSc.utilities.Etags(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(python/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(python/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST checkVendor from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:208) TESTING: checkVendor from config.setCompilers(python/BuildSystem/config/setCompilers.py:208) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:218) TESTING: checkInitialFlags from config.setCompilers(python/BuildSystem/config/setCompilers.py:218) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized executableFlags to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:321) TESTING: checkCCompiler from config.setCompilers(python/BuildSystem/config/setCompilers.py:321) Locate a functional C compiler Checking for program /home/feap/mpich2-install/bin/mpicc...found Defined make macro "CC" to "/home/feap/mpich2-install/bin/mpicc" Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:370) TESTING: checkCPreprocessor from config.setCompilers(python/BuildSystem/config/setCompilers.py:370) Locate a functional C preprocessor Checking for program /home/feap/mpich2-install/bin/mpicc...found Defined make macro "CPP" to "/home/feap/mpich2-install/bin/mpicc -E" Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 183 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 4 "conftest.c" 2 Popping language C ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:468) TESTING: checkCxxCompiler from config.setCompilers(python/BuildSystem/config/setCompilers.py:468) Locate a functional Cxx compiler Checking for program /home/feap/mpich2-install/bin/mpicxx...found Defined make macro "CXX" to "/home/feap/mpich2-install/bin/mpicxx" Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe conftest.o sh: sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:520) TESTING: checkCxxPreprocessor from config.setCompilers(python/BuildSystem/config/setCompilers.py:520) Locate a functional Cxx preprocessor Checking for program /home/feap/mpich2-install/bin/mpicxx...found Defined make macro "CXXCPP" to "/home/feap/mpich2-install/bin/mpicxx -E" Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -E conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -E conftest.cc sh: # 1 "conftest.cc" # 1 "" # 1 "" # 1 "conftest.cc" # 1 "confdefs.h" 1 # 2 "conftest.cc" 2 # 1 "conffix.h" 1 extern "C" { } # 3 "conftest.cc" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/cstdlib" 1 3 # 47 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/cstdlib" 3 # 48 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/cstdlib" 3 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/i686-pc-cygwin/bits/c++config.h" 1 3 # 35 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/i686-pc-cygwin/bits/c++config.h" 3 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/i686-pc-cy... ... ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; inline long abs(long __i) { return labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } } # 4 "conftest.cc" 2 Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:623) TESTING: checkFortranCompiler from config.setCompilers(python/BuildSystem/config/setCompilers.py:623) Locate a functional Fortran compiler Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif90...not found Checking for program /home/feap/mpich2-install/bin/mpif77...found Defined make macro "FC" to "/home/feap/mpich2-install/bin/mpif77" Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe conftest.o sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:658) TESTING: checkFortranComments from config.setCompilers(python/BuildSystem/config/setCompilers.py:658) Make sure fortran comment "!" works Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkBrokenMpif90 from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:667) TESTING: checkBrokenMpif90 from config.setCompilers(python/BuildSystem/config/setCompilers.py:667) mpif90 from mpich1 and older c-preprocessor combinations misbehave Pushing language FC Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:707) TESTING: checkPIC from config.setCompilers(python/BuildSystem/config/setCompilers.py:707) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Trying C compiler flag -PIC sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -PIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -PIC conftest.o sh: Possible ERROR while running linker: gcc: unrecognized option `-PIC' output: error message = {gcc: unrecognized option `-PIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -PIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting C linker flag -PIC due to gcc: unrecognized option `-PIC' Rejected C compiler flag -PIC because linker cannot handle it Trying C compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -fPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -fPIC conftest.o sh: Valid C linker flag -fPIC Adding C compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:1: warning: -fPIC ignored for target (all code is position independent) } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -fPIC due to conftest.c:1: warning: -fPIC ignored for target (all code is position independent) Rejected C compiler flag -fPIC Trying C compiler flag -KPIC sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -KPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -KPIC conftest.o sh: Possible ERROR while running linker: gcc: unrecognized option `-KPIC' output: error message = {gcc: unrecognized option `-KPIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -KPIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting C linker flag -KPIC due to gcc: unrecognized option `-KPIC' Rejected C compiler flag -KPIC because linker cannot handle it Popping language C Pushing language Cxx Trying Cxx compiler flag -PIC sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -PIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -PIC conftest.o sh: Possible ERROR while running linker: c++: unrecognized option `-PIC' output: error message = {c++: unrecognized option `-PIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -PIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting Cxx linker flag -PIC due to c++: unrecognized option `-PIC' Rejected Cxx compiler flag -PIC because linker cannot handle it Trying Cxx compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -fPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -fPIC conftest.o sh: Valid Cxx linker flag -fPIC Adding Cxx compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -fPIC conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -fPIC conftest.cc sh: Possible ERROR while running compiler: error message = {conftest.cc:1: warning: -fPIC ignored for target (all code is position independent) } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -fPIC due to conftest.cc:1: warning: -fPIC ignored for target (all code is position independent) Rejected Cxx compiler flag -fPIC Trying Cxx compiler flag -KPIC sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -KPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -KPIC conftest.o sh: Possible ERROR while running linker: c++: unrecognized option `-KPIC' output: error message = {c++: unrecognized option `-KPIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -KPIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting Cxx linker flag -KPIC due to c++: unrecognized option `-KPIC' Rejected Cxx compiler flag -KPIC because linker cannot handle it Popping language Cxx Pushing language FC Trying FC compiler flag -PIC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -PIC conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -PIC conftest.o sh: Possible ERROR while running linker: g77: unrecognized option `-PIC' output: error message = {g77: unrecognized option `-PIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -PIC conftest.o Source: program main end Rejecting FC linker flag -PIC due to g77: unrecognized option `-PIC' Rejected FC compiler flag -PIC because linker cannot handle it Trying FC compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -fPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -fPIC conftest.o sh: Valid FC linker flag -fPIC Adding FC compiler flag -fPIC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -fPIC conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -fPIC conftest.F sh: Possible ERROR while running compiler: error message = {conftest.F:0: warning: -fPIC ignored for target (all code is position independent) /cygdrive/c/WINDOWS/TEMP/ccs7uabY.f:0: warning: -fPIC ignored for target (all code is position independent) } Source: program main end Rejecting compiler flag -fPIC due to conftest.F:0: warning: -fPIC ignored for target (all code is position independent) /cygdrive/c/WINDOWS/TEMP/ccs7uabY.f:0: warning: -fPIC ignored for target (all code is position independent) Rejected FC compiler flag -fPIC Trying FC compiler flag -KPIC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -KPIC conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -KPIC conftest.o sh: Possible ERROR while running linker: g77: unrecognized option `-KPIC' output: error message = {g77: unrecognized option `-KPIC' } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -KPIC conftest.o Source: program main end Rejecting FC linker flag -KPIC due to g77: unrecognized option `-KPIC' Rejected FC compiler flag -KPIC because linker cannot handle it Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:747) TESTING: checkLargeFileIO from config.setCompilers(python/BuildSystem/config/setCompilers.py:747) ================================================================================ TEST checkArchiver from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:837) TESTING: checkArchiver from config.setCompilers(python/BuildSystem/config/setCompilers.py:837) Check that the archiver exists and can make a library usable by the compiler Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Checking for program /home/feap/mpich2-install/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /home/feap/mpich2-install/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib -c libconf1.a Executing: /usr/bin/ranlib -c libconf1.a sh: Possible ERROR while running ranlib: error message = {/usr/bin/ranlib: '-c': No such file } Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Checking for program /home/feap/mpich2-install/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /home/feap/mpich2-install/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib libconf1.a Executing: /usr/bin/ranlib libconf1.a sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconf1 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconf1 sh: Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:940) TESTING: checkSharedLinker from config.setCompilers(python/BuildSystem/config/setCompilers.py:940) Check that the linker can produce shared libraries Checking shared linker /home/feap/mpich2-install/bin/mpicc using flags ['-shared'] Checking for program /home/feap/mpich2-install/bin/mpicc...found Defined make macro "LD_SHARED" to "/home/feap/mpich2-install/bin/mpicc" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -shared conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -shared conftest.o sh: Valid C linker flag -shared sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o libconftest.so -shared conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o libconftest.so -shared conftest.o sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lconftest collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lconftest collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Checking shared linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "LD_SHARED" to "/usr/bin/ar" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a Executing: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -L. -lconftest sh: Using shared linker /usr/bin/ar with flags [] and library extension a sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:1011) TESTING: checkSharedLinkerPaths from config.setCompilers(python/BuildSystem/config/setCompilers.py:1011) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -flags Executing: /home/feap/mpich2-install/bin/mpicc -flags sh: Trying C linker flag -Wl,-rpath, sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o sh: Valid C linker flag -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 Popping language C Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicc -flags Executing: /home/feap/mpich2-install/bin/mpicc -flags sh: Trying Cxx linker flag -Wl,-rpath, sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o sh: Valid Cxx linker flag -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 Popping language Cxx Pushing language FC sh: /home/feap/mpich2-install/bin/mpicc -flags Executing: /home/feap/mpich2-install/bin/mpicc -flags sh: Trying FC linker flag -Wl,-rpath, sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 conftest.o sh: Valid FC linker flag -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5 Popping language FC ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:1083) TESTING: checkDynamicLinker from config.setCompilers(python/BuildSystem/config/setCompilers.py:1083) Check that the linker can produce dynamic libraries Checking for header: dlfcn.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 19 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *, int); extern void *dlsym (void *, const char *); extern int dlclose (void *); extern char *dlerror (void); extern void dlfork (int); # 4 "conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for functions ['dlopen', 'dlsym', 'dlclose'] in library ['dl'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -ldl Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -ldl sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -ldl collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -ldl collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); int main() { dlopen() ; return 0; } Popping language C Checking for functions ['dlopen', 'dlsym', 'dlclose'] in library [''] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Popping language C sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 Checking dynamic linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "DYNAMICLINKER" to "/usr/bin/ar" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /usr/bin/ar -o libconftest.so conftest.o Executing: /usr/bin/ar -o libconftest.so conftest.o sh: Possible ERROR while running linker: /usr/bin/ar: no operation specified output: ret = 256 error message = {/usr/bin/ar: no operation specified } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Source: #include "confdefs.h" #include "conffix.h" int foo(void) {return 0;} Checking dynamic linker /home/feap/mpich2-install/bin/mpicc using flags ['-shared'] Checking for program /home/feap/mpich2-install/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/home/feap/mpich2-install/bin/mpicc" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -shared conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -shared conftest.o sh: Valid C linker flag -shared sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o libconftest.so -shared conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o libconftest.so -shared conftest.o sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe conftest.o sh: Using dynamic linker /home/feap/mpich2-install/bin/mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/setCompilers.py:1129) TESTING: output from config.setCompilers(python/BuildSystem/config/setCompilers.py:1129) Output module data as defines and substitutions Substituting "CC" with "/home/feap/mpich2-install/bin/mpicc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/home/feap/mpich2-install/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/home/feap/mpich2-install/bin/mpicxx" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "/home/feap/mpich2-install/bin/mpicxx -E" Substituting "FC" with "/home/feap/mpich2-install/bin/mpif77" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "" Substituting "SHARED_LIBRARY_FLAG" with "" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilerFlags.py:66) TESTING: configureCompilerFlags from config.compilerFlags(python/BuildSystem/config/compilerFlags.py:66) Get the default compiler flags Pushing language C sh: /home/feap/mpich2-install/bin/mpicc --version Executing: /home/feap/mpich2-install/bin/mpicc --version sh: gcc (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) Copyright (C) 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /home/feap/mpich2-install/bin/mpicc gcc (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) sh: /home/feap/mpich2-install/bin/mpicc -show Executing: /home/feap/mpich2-install/bin/mpicc -show sh: gcc -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -Wall sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall conftest.c sh: Added C compiler flag -Wall Trying C compiler flag -Wshadow sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow conftest.c sh: Added C compiler flag -Wshadow Trying C compiler flag -Wwrite-strings sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings conftest.c sh: Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-long-double sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -Wno-long-double conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -Wno-long-double conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {cc1: error: unrecognized command line option "-Wno-long-double" } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -Wno-long-double due to nonzero status from link Rejecting compiler flag -Wno-long-double due to cc1: error: unrecognized command line option "-Wno-long-double" PETSc Error: No output file produced Rejected C compiler flag -Wno-long-double Trying C compiler flag -fomit-frame-pointer sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer conftest.c sh: Added C compiler flag -fomit-frame-pointer Trying C compiler flag -Wno-strict-aliasing sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing conftest.c sh: Added C compiler flag -Wno-strict-aliasing sh: /home/feap/mpich2-install/bin/mpicc -show Executing: /home/feap/mpich2-install/bin/mpicc -show sh: gcc -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -g3 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Added C compiler flag -g3 Popping language C Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx --version Executing: /home/feap/mpich2-install/bin/mpicxx --version sh: c++ (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) Copyright (C) 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /home/feap/mpich2-install/bin/mpicxx c++ (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) sh: /home/feap/mpich2-install/bin/mpicxx -show Executing: /home/feap/mpich2-install/bin/mpicxx -show sh: c++ -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lmpichcxx -lpmpich -lmpich sh: c++ --help Executing: c++ --help sh: Usage: c++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by c++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -Wall sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall conftest.cc sh: Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wshadow sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow conftest.cc sh: Added Cxx compiler flag -Wshadow Trying Cxx compiler flag -Wwrite-strings sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings conftest.cc sh: Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-long-double sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -Wno-long-double conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -Wno-long-double conftest.cc sh: Possible ERROR while running compiler: ret = 256 error message = {cc1plus: error: unrecognized command line option "-Wno-long-double" } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -Wno-long-double due to nonzero status from link Rejecting compiler flag -Wno-long-double due to cc1plus: error: unrecognized command line option "-Wno-long-double" PETSc Error: No output file produced Rejected Cxx compiler flag -Wno-long-double Trying Cxx compiler flag -fomit-frame-pointer sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer conftest.cc sh: Added Cxx compiler flag -fomit-frame-pointer Trying Cxx compiler flag -Wno-strict-aliasing sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing conftest.cc sh: Added Cxx compiler flag -Wno-strict-aliasing sh: /home/feap/mpich2-install/bin/mpicxx -show Executing: /home/feap/mpich2-install/bin/mpicxx -show sh: c++ -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lmpichcxx -lpmpich -lmpich sh: c++ --help Executing: c++ --help sh: Usage: c++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by c++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -g3 sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Added Cxx compiler flag -g3 Popping language Cxx Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 --version Executing: /home/feap/mpich2-install/bin/mpif77 --version sh: GNU Fortran (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) Copyright (C) 2004 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING or type the command `info -f g77 Copying'. getCompilerVersion: /home/feap/mpich2-install/bin/mpif77 GNU Fortran (GCC) 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) sh: /home/feap/mpich2-install/bin/mpif77 -show Executing: /home/feap/mpich2-install/bin/mpif77 -show sh: g77 -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich sh: g77 --help Executing: g77 --help sh: Usage: g77 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g77. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -Wall sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall conftest.F sh: Added FC compiler flag -Wall sh: /home/feap/mpich2-install/bin/mpif77 -show Executing: /home/feap/mpich2-install/bin/mpif77 -show sh: g77 -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich sh: g77 --help Executing: g77 --help sh: Usage: g77 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g77. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -g sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Added FC compiler flag -g Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(python/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/arch.py:39) TESTING: configureArchitecture from PETSc.utilities.arch(python/PETSc/utilities/arch.py:39) Checks PETSC_ARCH and sets if not set Defined "ARCH" to "cygwin" Defined "ARCH_NAME" to ""cygwin-c-real-debug"" Substituting "ARCH" with "cygwin-c-real-debug" ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/sharedLibraries.py:41) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(python/PETSc/utilities/sharedLibraries.py:41) Defined make rule "shared_arch" with dependencies "" and code [] Defined make macro "BUILDSHAREDLIB" to "no" ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/sharedLibraries.py:53) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(python/PETSc/utilities/sharedLibraries.py:53) Checks whether dynamic libraries should be used, for which you must - Specify --with-dynamic - Have found a working dynamic linker (with dlfcn.h and libdl) Defines PETSC_USE_DYNAMIC_LIBRARIES if they are used Dynamic libraries - disabled ================================================================================ TEST configureBmakeDir from PETSc.utilities.bmakeDir(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/bmakeDir.py:26) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(python/PETSc/utilities/bmakeDir.py:26) Makes bmake/$PETSC_ARCH if it does not exist Changed persistence directory to bmake/cygwin-c-real-debug sh: /home/feap/mpich2-install/bin/mpicc --help Executing: /home/feap/mpich2-install/bin/mpicc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:126) TESTING: checkRestrict from config.compilers(python/BuildSystem/config/compilers.py:126) Check for the C/CXX restrict keyword Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:5: error: syntax error before "x" } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:5: warning: unused variable `x' } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:244) TESTING: checkCFormatting from config.compilers(python/BuildSystem/config/compilers.py:244) Activate format string checking if using the GNU compilers compilers: Added gcc printf format checking Defined "PRINTF_FORMAT_CHECK(A,B)" to "__attribute__((format (printf, A, B)))" ================================================================================ TEST checkCStaticInline from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:97) TESTING: checkCStaticInline from config.compilers(python/BuildSystem/config/compilers.py:97) Check for C keyword: static inline Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `i' } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:254) TESTING: checkDynamicLoadFlag from config.compilers(python/BuildSystem/config/compilers.py:254) Checks that dlopen() takes RTLD_GLOBAL, and defines PETSC_HAVE_RTLD_GLOBAL if it does sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:153) TESTING: checkCLibraries from config.compilers(python/BuildSystem/config/compilers.py:153) Determines the libraries needed to link with C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: mpicc for 1.0.3 Possible ERROR while running linker: Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lpmpich -lmpich -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc output: mpicc for 1.0.3 error message = {Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lpmpich -lmpich -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Checking arg mpicc compilers: Unknown arg mpicc compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.0.3 compilers: Unknown arg 1.0.3 compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Unknown arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Checking arg --verbose compilers: Unknown arg --verbose compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --exec-prefix=/usr compilers: Unknown arg --exec-prefix=/usr compilers: Checking arg --sysconfdir=/etc compilers: Unknown arg --sysconfdir=/etc compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Unknown arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-version-specific-runtime-libs compilers: Unknown arg --enable-version-specific-runtime-libs compilers: Checking arg --without-x compilers: Unknown arg --without-x compilers: Checking arg --enable-libgcj compilers: Unknown arg --enable-libgcj compilers: Checking arg --disable-java-awt compilers: Unknown arg --disable-java-awt compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-interpreter compilers: Unknown arg --enable-interpreter compilers: Checking arg --disable-libgcj-debug compilers: Unknown arg --disable-libgcj-debug compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --enable-java-gc=boehm compilers: Unknown arg --enable-java-gc=boehm compilers: Checking arg --disable-win32-registry compilers: Unknown arg --disable-win32-registry compilers: Checking arg --enable-sjlj-exceptions compilers: Unknown arg --enable-sjlj-exceptions compilers: Checking arg --enable-hash-synchronization compilers: Unknown arg --enable-hash-synchronization compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg (reconfigured) compilers: Unknown arg (reconfigured) compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.4.4 compilers: Unknown arg 3.4.4 compilers: Checking arg (cygming compilers: Unknown arg (cygming compilers: Checking arg special) compilers: Unknown arg special) compilers: Checking arg (gdc compilers: Unknown arg (gdc compilers: Checking arg 0.12, compilers: Unknown arg 0.12, compilers: Checking arg using compilers: Unknown arg using compilers: Checking arg dmd compilers: Unknown arg dmd compilers: Checking arg 0.125) compilers: Unknown arg 0.125) compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg --dll-search-prefix=cyg compilers: Unknown arg --dll-search-prefix=cyg compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest.exe compilers: Unknown arg conftest.exe compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Checking arg -L/home/feap/mpich2-install/lib compilers: Found library or library directory: -L/home/feap/mpich2-install/lib compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -lpmpich compilers: Found library or library directory: -lpmpich compilers: Checking arg -lmpich compilers: Found library or library directory: -lmpich compilers: Checking arg -lgcc compilers: Checking arg -lcygwin compilers: Found library or library directory: -lcygwin compilers: Checking arg -luser32 compilers: Found library or library directory: -luser32 compilers: Checking arg -lkernel32 compilers: Checking arg -ladvapi32 compilers: Found library or library directory: -ladvapi32 compilers: Checking arg -lshell32 compilers: Found library or library directory: -lshell32 compilers: Checking arg -lgcc compilers: Libraries needed to link C code with another linker: ['-L/home/feap/mpich2-install/lib', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lpmpich', '-lmpich', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] compilers: Check that C libraries can be used from Fortran Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lpmpich -lmpich -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lpmpich -lmpich -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../libcygwin.a(libcmain.o):: undefined reference to `_WinMain@16' collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../libcygwin.a(libcmain.o):: undefined reference to `_WinMain@16' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lpmpich -lmpich -lcygwin -luser32 -ladvapi32 -lshell32 Source: program main end Popping language FC compilers: C libraries cannot directly be used from Fortran compilers: Error message from compiling {Cannot compile/link FC with /home/feap/mpich2-install/bin/mpicc.} sh: /home/feap/mpich2-install/bin/mpicxx --help Executing: /home/feap/mpich2-install/bin/mpicxx --help sh: Usage: c++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by c++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:126) TESTING: checkRestrict from config.compilers(python/BuildSystem/config/compilers.py:126) Check for the C/CXX restrict keyword Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.cc: In function `int main()': conftest.cc:5: error: expected primary-expression before "float" conftest.cc:5: error: expected `;' before "float" } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Possible ERROR while running compiler: error message = {conftest.cc: In function `int main()': conftest.cc:5: warning: unused variable 'x' } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:286) TESTING: checkCxxNamespace from config.compilers(python/BuildSystem/config/compilers.py:286) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:261) TESTING: checkCxxOptionalExtensions from config.compilers(python/BuildSystem/config/compilers.py:261) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:111) TESTING: checkCxxStaticInline from config.compilers(python/BuildSystem/config/compilers.py:111) Check for C++ keyword: static inline Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Possible ERROR while running compiler: error message = {conftest.cc: In function `int main()': conftest.cc:6: warning: unused variable 'i' } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:301) TESTING: checkCxxLibraries from config.compilers(python/BuildSystem/config/compilers.py:301) Determines the libraries needed to link with C++ Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: mpicxx for 1.0.3 Possible ERROR while running linker: Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lmpichcxx -lpmpich -lmpich -lstdc++ -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc output: mpicxx for 1.0.3 error message = {Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lmpichcxx -lpmpich -lmpich -lstdc++ -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -v -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx compilers: Checking arg mpicxx compilers: Unknown arg mpicxx compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.0.3 compilers: Unknown arg 1.0.3 compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Unknown arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Checking arg --verbose compilers: Unknown arg --verbose compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --exec-prefix=/usr compilers: Unknown arg --exec-prefix=/usr compilers: Checking arg --sysconfdir=/etc compilers: Unknown arg --sysconfdir=/etc compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Unknown arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-version-specific-runtime-libs compilers: Unknown arg --enable-version-specific-runtime-libs compilers: Checking arg --without-x compilers: Unknown arg --without-x compilers: Checking arg --enable-libgcj compilers: Unknown arg --enable-libgcj compilers: Checking arg --disable-java-awt compilers: Unknown arg --disable-java-awt compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-interpreter compilers: Unknown arg --enable-interpreter compilers: Checking arg --disable-libgcj-debug compilers: Unknown arg --disable-libgcj-debug compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --enable-java-gc=boehm compilers: Unknown arg --enable-java-gc=boehm compilers: Checking arg --disable-win32-registry compilers: Unknown arg --disable-win32-registry compilers: Checking arg --enable-sjlj-exceptions compilers: Unknown arg --enable-sjlj-exceptions compilers: Checking arg --enable-hash-synchronization compilers: Unknown arg --enable-hash-synchronization compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg (reconfigured) compilers: Unknown arg (reconfigured) compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.4.4 compilers: Unknown arg 3.4.4 compilers: Checking arg (cygming compilers: Unknown arg (cygming compilers: Checking arg special) compilers: Unknown arg special) compilers: Checking arg (gdc compilers: Unknown arg (gdc compilers: Checking arg 0.12, compilers: Unknown arg 0.12, compilers: Checking arg using compilers: Unknown arg using compilers: Checking arg dmd compilers: Unknown arg dmd compilers: Checking arg 0.125) compilers: Unknown arg 0.125) compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg --dll-search-prefix=cyg compilers: Unknown arg --dll-search-prefix=cyg compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest.exe compilers: Unknown arg conftest.exe compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Checking arg -L/home/feap/mpich2-install/lib compilers: Found library or library directory: -L/home/feap/mpich2-install/lib Library already in C list so skipping in C++ compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 Library already in C list so skipping in C++ compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. Library already in C list so skipping in C++ compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -lmpichcxx compilers: Found library or library directory: -lmpichcxx compilers: Checking arg -lpmpich compilers: Found library or library directory: -lpmpich Library already in C list so skipping in C++ compilers: Checking arg -lmpich compilers: Found library or library directory: -lmpich Library already in C list so skipping in C++ compilers: Checking arg -lstdc++ compilers: Found library or library directory: -lstdc++ compilers: Checking arg -lgcc compilers: Checking arg -lcygwin compilers: Found library or library directory: -lcygwin Library already in C list so skipping in C++ compilers: Checking arg -luser32 compilers: Found library or library directory: -luser32 Library already in C list so skipping in C++ compilers: Checking arg -lkernel32 compilers: Checking arg -ladvapi32 compilers: Found library or library directory: -ladvapi32 Library already in C list so skipping in C++ compilers: Checking arg -lshell32 compilers: Found library or library directory: -lshell32 Library already in C list so skipping in C++ compilers: Checking arg -lgcc compilers: Libraries needed to link Cxx code with another linker: ['-lmpichcxx', '-lstdc++'] compilers: Check that Cxx libraries can be used from C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lmpichcxx -lstdc++ Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lmpichcxx -lstdc++ sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lmpichcxx -lstdc++ Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lmpichcxx -lstdc++ sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o -lmpichcxx -lstdc++ Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o -lmpichcxx -lstdc++ sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o -lmpichcxx -lstdc++ Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o -lmpichcxx -lstdc++ sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language FC ================================================================================ TEST checkFortranTypeSizes from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:405) TESTING: checkFortranTypeSizes from config.compilers(python/BuildSystem/config/compilers.py:405) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Possible ERROR while running compiler: error message = {conftest.F: In program `main': In file included from conftest.F:0: conftest.F:2: warning: unused variable 'variable' } Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:464) TESTING: checkFortranNameMangling from config.compilers(python/BuildSystem/config/compilers.py:464) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Popping language C Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o confc.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o confc.o sh: Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:497) TESTING: checkFortranNameManglingDouble from config.compilers(python/BuildSystem/config/compilers.py:497) Checks if symbols containing and underscore append and extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Popping language C Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o confc.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o confc.o sh: Popping language FC compilers: Fortran appends and extra underscore to names containing underscores Defined "HAVE_FORTRAN_UNDERSCORE_UNDERSCORE" to "1" ================================================================================ TEST checkFortranPreprocessor from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:507) TESTING: checkFortranPreprocessor from config.compilers(python/BuildSystem/config/compilers.py:507) Determine if Fortran handles preprocessing properly Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -DPTesting conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -DPTesting conftest.F sh: Added FC compiler flag Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranLibraries from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:529) TESTING: checkFortranLibraries from config.compilers(python/BuildSystem/config/compilers.py:529) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -V Executing: /home/feap/mpich2-install/bin/mpif77 -V sh: sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -v -Wall -g conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -v -Wall -g conftest.o sh: mpif77 for 1.0.3 Possible ERROR while running linker: Driving: g77 -o conftest.exe -v -Wall -g conftest.o -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lpmpich -lmpich -lfrtbegin -lg2c -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc output: mpif77 for 1.0.3 error message = {Driving: g77 -o conftest.exe -v -Wall -g conftest.o -I/home/feap/mpich2-install/include -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c Reading specs from /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs Configured with: /gcc/gcc-3.4.4/gcc-3.4.4-1/configure --verbose --prefix=/usr --exec-prefix=/usr --sysconfdir=/etc --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-languages=c,ada,c++,d,f77,java,objc --enable-nls --without-included-gettext --enable-version-specific-runtime-libs --without-x --enable-libgcj --disable-java-awt --with-system-zlib --enable-interpreter --disable-libgcj-debug --enable-threads=posix --enable-java-gc=boehm --disable-win32-registry --enable-sjlj-exceptions --enable-hash-synchronization --enable-libstdcxx-debug : (reconfigured) Thread model: posix gcc version 3.4.4 (cygming special) (gdc 0.12, using dmd 0.125) /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe -Bdynamic --dll-search-prefix=cyg -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o -L/home/feap/mpich2-install/lib -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. conftest.o -lpmpich -lmpich -lfrtbegin -lg2c -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -v -Wall -g conftest.o Source: program main end Popping language FC compilers: Checking arg mpif77 compilers: Unknown arg mpif77 compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.0.3 compilers: Unknown arg 1.0.3 compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg g77 compilers: Unknown arg g77 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest.exe compilers: Unknown arg conftest.exe compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -I/home/feap/mpich2-install/include compilers: Found include directory: /home/feap/mpich2-install/include compilers: Checking arg -L/home/feap/mpich2-install/lib compilers: Found library or library directory: -L/home/feap/mpich2-install/lib compilers: Checking arg -lpmpich compilers: Found library or library directory: -lpmpich compilers: Checking arg -lmpich compilers: Found library or library directory: -lmpich compilers: Checking arg -lfrtbegin sh: uname -s Executing: uname -s sh: CYGWIN_NT-5.1 compilers: Found library or library directory: -lfrtbegin compilers: Checking arg -lg2c compilers: Found library or library directory: -lg2c compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/specs compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Unknown arg /gcc/gcc-3.4.4/gcc-3.4.4-1/configure compilers: Checking arg --verbose compilers: Unknown arg --verbose compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --exec-prefix=/usr compilers: Unknown arg --exec-prefix=/usr compilers: Checking arg --sysconfdir=/etc compilers: Unknown arg --sysconfdir=/etc compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Unknown arg --enable-languages=c,ada,c++,d,f77,java,objc compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-version-specific-runtime-libs compilers: Unknown arg --enable-version-specific-runtime-libs compilers: Checking arg --without-x compilers: Unknown arg --without-x compilers: Checking arg --enable-libgcj compilers: Unknown arg --enable-libgcj compilers: Checking arg --disable-java-awt compilers: Unknown arg --disable-java-awt compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-interpreter compilers: Unknown arg --enable-interpreter compilers: Checking arg --disable-libgcj-debug compilers: Unknown arg --disable-libgcj-debug compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --enable-java-gc=boehm compilers: Unknown arg --enable-java-gc=boehm compilers: Checking arg --disable-win32-registry compilers: Unknown arg --disable-win32-registry compilers: Checking arg --enable-sjlj-exceptions compilers: Unknown arg --enable-sjlj-exceptions compilers: Checking arg --enable-hash-synchronization compilers: Unknown arg --enable-hash-synchronization compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg (reconfigured) compilers: Unknown arg (reconfigured) compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.4.4 compilers: Unknown arg 3.4.4 compilers: Checking arg (cygming compilers: Unknown arg (cygming compilers: Checking arg special) compilers: Unknown arg special) compilers: Checking arg (gdc compilers: Unknown arg (gdc compilers: Checking arg 0.12, compilers: Unknown arg 0.12, compilers: Checking arg using compilers: Unknown arg using compilers: Checking arg dmd compilers: Unknown arg dmd compilers: Checking arg 0.125) compilers: Unknown arg 0.125) compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/collect2.exe compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg --dll-search-prefix=cyg compilers: Unknown arg --dll-search-prefix=cyg compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest.exe compilers: Unknown arg conftest.exe compilers: Checking arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Unknown arg /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../crt0.o compilers: Checking arg -L/home/feap/mpich2-install/lib compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 compilers: Checking arg -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Found library or library directory: -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -lpmpich compilers: Checking arg -lmpich compilers: Checking arg -lfrtbegin compilers: Checking arg -lg2c compilers: Checking arg -lgcc compilers: Checking arg -lcygwin compilers: Found library or library directory: -lcygwin compilers: Checking arg -luser32 compilers: Found library or library directory: -luser32 compilers: Checking arg -lkernel32 compilers: Checking arg -ladvapi32 compilers: Found library or library directory: -ladvapi32 compilers: Checking arg -lshell32 compilers: Found library or library directory: -lshell32 compilers: Checking arg -lgcc compilers: Libraries needed to link Fortran code with the C linker: ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C compilers: Check for Intel PEPCF90 library Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lPEPCF90 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lPEPCF90 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lPEPCF90 collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lPEPCF90 collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lPEPCF90 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Intel PEPCF90 library does not exist compilers: Check that Fortran libraries can be used from C++ Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language Cxx compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:786) TESTING: checkFortranLinkingCxx from config.compilers(python/BuildSystem/config/compilers.py:786) Check that Fortran can be linked against C++ Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Popping language Cxx Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Popping language Cxx Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o cxxobj.o confc.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o cxxobj.o confc.o sh: Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:821) TESTING: checkFortran90 from config.compilers(python/BuildSystem/config/compilers.py:821) Determine whether the Fortran compiler handles F90 Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.F: In program `main': conftest.F:2: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) ^ Fortran 90 feature at (^) unsupported conftest.F:2: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) ^ Invalid declaration of or reference to symbol `selected_int_kind' at (^) [initially seen at (^)] conftest.F:2: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) 1 conftest.F:3: (continued): INTEGER (KIND=int) :: ierr 2 Invalid declaration of or reference to symbol `int' at (2) [initially seen at (1)] } Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Compile failed inside link Fortran compiler does not support F90 Popping language FC ================================================================================ TEST checkFortran90Interface from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:867) TESTING: checkFortran90Interface from config.compilers(python/BuildSystem/config/compilers.py:867) Check for custom F90 interfaces, such as that provided by PETSc ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/compilers.py:931) TESTING: setupFrameworkCompilers from config.compilers(python/BuildSystem/config/compilers.py:931) ================================================================================ TEST configureLibrary from PETSc.packages.Mathematica(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/Mathematica.py:15) TESTING: configureLibrary from PETSc.packages.Mathematica(python/PETSc/packages/Mathematica.py:15) Find a Mathematica installation and check if it can work with PETSc ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/fortranCPP.py:26) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(python/PETSc/utilities/fortranCPP.py:26) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $<'] Defined make rule ".f.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<'] Defined make rule ".F.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:59) TESTING: checkStdC from config.headers(python/BuildSystem/config/headers.py:59) sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... y (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 4 "conftest.c" 2 sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 183 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 4 "conftest.c" 2 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:92) TESTING: checkStat from config.headers(python/BuildSystem/config/headers.py:92) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr... ... (__cdecl__)) fchmod (int __fd, mode_t __mode); int __attribute__((__cdecl__)) fstat ( int __fd, struct stat *__sbuf ); int __attribute__((__cdecl__)) mkdir ( const char *_path, mode_t __mode ); int __attribute__((__cdecl__)) mkfifo ( const char *__path, mode_t __mode ); int __attribute__((__cdecl__)) stat ( const char *__path, struct stat *__sbuf ); mode_t __attribute__((__cdecl__)) umask ( mode_t __mask ); int __attribute__((__cdecl__)) lstat ( const char *__path, struct stat *__buf ); int __attribute__((__cdecl__)) mknod ( const char *__path, mode_t __mode, dev_t __dev ); # 6 "conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:127) TESTING: checkSysWait from config.headers(python/BuildSystem/config/headers.py:127) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:149) TESTING: checkTime from config.headers(python/BuildSystem/config/headers.py:149) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_... ... d, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *evp, timer_t *timerid); int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *value, struct itimerspec *ovalue); int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 9 "/usr/inc... ... itimerval { struct timeval it_interval; struct timeval it_value; }; # 73 "/usr/include/sys/time.h" 3 4 int __attribute__((__cdecl__)) gettimeofday (struct timeval *__p, struct timezone *__z); int __attribute__((__cdecl__)) settimeofday (const struct timeval *, const struct timezone *); int __attribute__((__cdecl__)) utimes (const char *__path, const struct timeval *__tvp); int __attribute__((__cdecl__)) getitimer (int __which, struct itimerval *__value); int __attribute__((__cdecl__)) setitimer (int __which, const struct itimerval *__value, struct itimerval *__ovalue); # 4 "conftest.c" 2 Defined "HAVE_SYS_TIME_H" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:17: dos.h: No such file or directory ret = 256 error message = {conftest.c:3:17: dos.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 14 "/usr/include/endian.h" 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 15 "/usr/include/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 14 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/sys/fcntl.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/s... ... ); int __attribute__((__cdecl__)) mkfifo ( const char *__path, mode_t __mode ); int __attribute__((__cdecl__)) stat ( const char *__path, struct stat *__sbuf ); mode_t __attribute__((__cdecl__)) umask ( mode_t __mask ); int __attribute__((__cdecl__)) lstat ( const char *__path, struct stat *__buf ); int __attribute__((__cdecl__)) mknod ( const char *__path, mode_t __mode, dev_t __dev ); # 165 "/usr/include/sys/fcntl.h" 2 3 4 extern int open (const char *, int, ...); extern int creat (const char *, mode_t); extern int fcntl (int, int, ...); # 15 "/usr/include/fcntl.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/float.h" 1 3 4 # 4 "conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/io.h" 1 3 4 # 21 "/usr/include/io.h" 3 4 extern long get_osfhandle(int); extern int setmode (int __fd, int __mode); int access(const char *__path, int __amode); # 4 "conftest.c" 2 Defined "HAVE_IO_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 1 3 4 # 11 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 ... ... 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 14 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 7 "/usr/inclu... ... nt fsmblks; int uordblks; int fordblks; int keepcost; }; extern void * malloc (size_t); extern void free (void *); extern void * realloc (void *, size_t); extern void * calloc (size_t, size_t); extern void * memalign (size_t, size_t); extern struct mallinfo mallinfo (void); extern void malloc_stats (void); extern int mallopt (int, int); extern size_t malloc_usable_size (void *); # 112 "/usr/include/malloc.h" 3 4 extern void * valloc (size_t); extern void * pvalloc (size_t); extern int malloc_trim (size_t); # 138 "/usr/include/malloc.h" 3 4 extern void mstats (char *); # 4 "conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 42 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/confi... ... attr_t {char __dummy;} *pthread_rwlockattr_t; # 373 "/usr/include/sys/types.h" 2 3 4 # 43 "/usr/include/pwd.h" 2 3 4 struct passwd { char *pw_name; char *pw_passwd; uid_t pw_uid; gid_t pw_gid; char *pw_comment; char *pw_gecos; char *pw_dir; char *pw_shell; }; struct passwd *getpwuid (uid_t); struct passwd *getpwnam (const char *); int getpwnam_r (const char *, struct passwd *, char *, size_t , struct passwd **); int getpwuid_r (uid_t, struct passwd *, char *, size_t, struct passwd **); struct passwd *getpwent (void); void setpwent (void); void endpwent (void); # 4 "conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 12 "/usr/include/search.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 13 "/usr/include/search.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config... ... *); void *tdelete (const void * __restrict, void ** __restrict, int (*) (const void *, const void *)); void tdestroy (void *, void (*)(void *)); void *tfind (const void *, void **, int (*) (const void *, const void *)); void *tsearch (const void *, void **, int (*) (const void *, const void *)); void twalk (const void *, void (*) (const void *, VISIT, int)); void *lfind (const void *, const void *, size_t *, size_t, int (*) (const void *, const void *)); void *lsearch (const void *, void *, size_t *, size_t, int (*) (const void *, const void *)); # 4 "conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/s... ... nt __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 5 "/usr/include/strings.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stropts.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:21: stropts.h: No such file or directory ret = 256 error message = {conftest.c:3:21: stropts.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 1 "/usr/include/sys/unistd.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/... ... ibute__((__cdecl__)) setdtablesize (int); useconds_t __attribute__((__cdecl__)) ualarm (useconds_t __useconds, useconds_t __interval); unsigned __attribute__((__cdecl__)) usleep (unsigned int __useconds); int __attribute__((__cdecl__)) gethostname (char *__name, size_t __len); char * __attribute__((__cdecl__)) mktemp (char *); void __attribute__((__cdecl__)) sync (void); int __attribute__((__cdecl__)) readlink (const char *__path, char *__buf, int __buflen); int __attribute__((__cdecl__)) symlink (const char *__name1, const char *__name2); # 5 "/usr/include/unistd.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/machine/endian.h" 1 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 4 "/usr/include/machine/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 12 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/... ... -cygwin/3.4.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 14 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 15 "/usr/include/sys/param.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 4 # 16 "/usr/include/sys/procfs.h" 3 4 # 1 "/usr/include/cygwin/core_dump.h" 1 3 4 # 16 "/usr/include/cygwin/core_dump.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 1 3 4 # 16 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 3 # 47 "/usr/lib/gcc/i686-pc-cygwin/3.4.... ... ead_info { DWORD tid; BOOL is_active_thread; CONTEXT thread_context; } __attribute__ ((packed)) ; struct win32_core_module_info { void* base_address; int module_name_size; char module_name[1]; } __attribute__ ((packed)) ; struct win32_pstatus { unsigned long data_type; union { struct win32_core_process_info process_info; struct win32_core_thread_info thread_info; struct win32_core_module_info module_info; } data ; } __attribute__ ((packed)) ; typedef struct win32_pstatus win32_pstatus_t ; # 17 "/usr/include/sys/procfs.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 14 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/... ... im_t rlim_max; }; struct rusage { struct timeval ru_utime; struct timeval ru_stime; long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; int getrlimit (int __resource, struct rlimit *__rlp); int setrlimit (int __resource, const struct rlimit *__rlp); int getrusage (int __who, struct rusage *__rusage); int getpriority (int which, id_t who); int setpriority (int which, id_t who, int value); # 4 "conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/in... ... "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 9 "/usr/include/sys/times.h" 2 3 4 typedef unsigned long clock_t; struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; clock_t __attribute__((__cdecl__)) times (struct tms *); # 4 "conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 18 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[20]; char nodename[20]; char release[20]; char version[20]; char machine[20]; }; int uname (struct utsname *); # 4 "conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... y (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 183 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 4 "conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 14 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 15 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # ... ... int sendmsg(int s, const struct msghdr *msg, int flags); int sendto (int, const void *, int __len, int __flags, const struct sockaddr *__to, int __tolen); int setsockopt (int __s, int __level, int __optname, const void *optval, int __optlen); int getsockopt (int __s, int __level, int __optname, void *__optval, int *__optlen); int shutdown (int, int); int socket (int __family, int __type, int __protocol); int socketpair (int __domain, int __type, int __protocol, int *__socket_vec); struct servent *getservbyname (const char *__name, const char *__proto); # 4 "conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 14 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cy... ... /usr/include/sys/wait.h" 2 3 4 # 41 "/usr/include/sys/wait.h" 3 4 pid_t wait (int *); pid_t waitpid (pid_t, int *, int); pid_t wait3 (int *__status, int __options, struct rusage *__rusage); pid_t wait4 (pid_t __pid, int *__status, int __options, struct rusage *__rusage); union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 4 "conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 14 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/cygwin/in.h" 1 3 4 # 21 "/usr/include/cygwin/in.h" 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 18 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef long int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uin... ... unsigned short int __ntohs(unsigned short int); extern __inline__ unsigned long int __constant_ntohl(unsigned long int); extern __inline__ unsigned short int __constant_ntohs(unsigned short int); extern __inline__ unsigned long int __ntohl(unsigned long int x) { __asm__("xchgb %b0,%h0\n\t" "rorl $16,%0\n\t" "xchgb %b0,%h0" :"=q" (x) : "0" (x)); return x; } extern __inline__ unsigned short int __ntohs(unsigned short int x) { __asm__("xchgb %b0,%h0" : "=q" (x) : "0" (x)); return x; } # 179 "/usr/include/cygwin/in.h" 2 3 4 # 15 "/usr/include/netinet/in.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 73 "/usr/include/netdb.h" 3 4 struct hostent { const char *h_name; char **h_aliases; short h_addrtype; short h_length; char **h_addr_list; }; struct netent { char *n_name; char **n_aliases; short n_addrtype; unsigned long n_net; }; struct servent { char *s_name; char **s_aliases; short s_port; char *s_proto; }; struct protoent { char *p_name; char **p_aliases; short p_proto; }; struct rpcent { c... ... tent *getnetent (void); struct protoent *getprotobyname (const char *); struct protoent *getprotobynumber (int); struct protoent *getprotoent (void); struct servent *getservbyname (const char *, const char *); struct servent *getservbyport (int, const char *); struct servent *getservent (void); struct rpcent *getrpcent (void); struct rpcent *getrpcbyname (const char *); struct rpcent *getrpcbynumber (int); const char *hstrerror (int); void herror (const char *); void sethostent (int); void setnetent (int); void setprotoent (int); void setservent (int); void setrpcent (int); # 4 "conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: Direct.h: No such file or directory ret = 256 error message = {conftest.c:3:20: Direct.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_... ... d, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *evp, timer_t *timerid); int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *value, struct itimerspec *ovalue); int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 1 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 4 # 13 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/winsock2.h" 1 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/winsock2.h" 3 4 # 18 "/usr/lib/gcc/i68... ... i_canonname; struct sockaddr *ai_addr; struct addrinfo *ai_next; }; # 322 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 struct sockaddr_in6_old { short sin6_family; u_short sin6_port; u_long sin6_flowinfo; struct in6_addr sin6_addr; }; typedef union sockaddr_gen{ struct sockaddr Address; struct sockaddr_in AddressIn; struct sockaddr_in6_old AddressIn6; } sockaddr_gen; typedef struct _INTERFACE_INFO { u_long iiFlags; sockaddr_gen iiAddress; sockaddr_gen iiBroadcastAddress; sockaddr_gen iiNetmask; } INTERFACE_INFO, *LPINTERFACE_INFO; # 4 "conftest.c" 2 Defined "HAVE_WS2TCPIP_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr... ... thread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 373 "/usr/include/sys/types.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/WindowsX.h" 1 3 4 # 5 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/WindowsX.h" 3 # 4 "conftest.c" 2 Defined "HAVE_WINDOWSX_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:17: dos.h: No such file or directory ret = 256 error message = {conftest.c:3:17: dos.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 14 "/usr/include/endian.h" 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 15 "/usr/include/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 14 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/sys/fcntl.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/s... ... ); int __attribute__((__cdecl__)) mkfifo ( const char *__path, mode_t __mode ); int __attribute__((__cdecl__)) stat ( const char *__path, struct stat *__sbuf ); mode_t __attribute__((__cdecl__)) umask ( mode_t __mask ); int __attribute__((__cdecl__)) lstat ( const char *__path, struct stat *__buf ); int __attribute__((__cdecl__)) mknod ( const char *__path, mode_t __mode, dev_t __dev ); # 165 "/usr/include/sys/fcntl.h" 2 3 4 extern int open (const char *, int, ...); extern int creat (const char *, mode_t); extern int fcntl (int, int, ...); # 15 "/usr/include/fcntl.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/float.h" 1 3 4 # 4 "conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/io.h" 1 3 4 # 21 "/usr/include/io.h" 3 4 extern long get_osfhandle(int); extern int setmode (int __fd, int __mode); int access(const char *__path, int __amode); # 4 "conftest.c" 2 Defined "HAVE_IO_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 1 3 4 # 11 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 ... ... 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 14 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 7 "/usr/inclu... ... nt fsmblks; int uordblks; int fordblks; int keepcost; }; extern void * malloc (size_t); extern void free (void *); extern void * realloc (void *, size_t); extern void * calloc (size_t, size_t); extern void * memalign (size_t, size_t); extern struct mallinfo mallinfo (void); extern void malloc_stats (void); extern int mallopt (int, int); extern size_t malloc_usable_size (void *); # 112 "/usr/include/malloc.h" 3 4 extern void * valloc (size_t); extern void * pvalloc (size_t); extern int malloc_trim (size_t); # 138 "/usr/include/malloc.h" 3 4 extern void mstats (char *); # 4 "conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 42 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/confi... ... attr_t {char __dummy;} *pthread_rwlockattr_t; # 373 "/usr/include/sys/types.h" 2 3 4 # 43 "/usr/include/pwd.h" 2 3 4 struct passwd { char *pw_name; char *pw_passwd; uid_t pw_uid; gid_t pw_gid; char *pw_comment; char *pw_gecos; char *pw_dir; char *pw_shell; }; struct passwd *getpwuid (uid_t); struct passwd *getpwnam (const char *); int getpwnam_r (const char *, struct passwd *, char *, size_t , struct passwd **); int getpwuid_r (uid_t, struct passwd *, char *, size_t, struct passwd **); struct passwd *getpwent (void); void setpwent (void); void endpwent (void); # 4 "conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 12 "/usr/include/search.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 13 "/usr/include/search.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config... ... *); void *tdelete (const void * __restrict, void ** __restrict, int (*) (const void *, const void *)); void tdestroy (void *, void (*)(void *)); void *tfind (const void *, void **, int (*) (const void *, const void *)); void *tsearch (const void *, void **, int (*) (const void *, const void *)); void twalk (const void *, void (*) (const void *, VISIT, int)); void *lfind (const void *, const void *, size_t *, size_t, int (*) (const void *, const void *)); void *lsearch (const void *, void *, size_t *, size_t, int (*) (const void *, const void *)); # 4 "conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/s... ... nt __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 5 "/usr/include/strings.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stropts.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:21: stropts.h: No such file or directory ret = 256 error message = {conftest.c:3:21: stropts.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 1 "/usr/include/sys/unistd.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/... ... ibute__((__cdecl__)) setdtablesize (int); useconds_t __attribute__((__cdecl__)) ualarm (useconds_t __useconds, useconds_t __interval); unsigned __attribute__((__cdecl__)) usleep (unsigned int __useconds); int __attribute__((__cdecl__)) gethostname (char *__name, size_t __len); char * __attribute__((__cdecl__)) mktemp (char *); void __attribute__((__cdecl__)) sync (void); int __attribute__((__cdecl__)) readlink (const char *__path, char *__buf, int __buflen); int __attribute__((__cdecl__)) symlink (const char *__name1, const char *__name2); # 5 "/usr/include/unistd.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/machine/endian.h" 1 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 4 "/usr/include/machine/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 12 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/... ... -cygwin/3.4.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 13 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 14 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/include/limits.h" 2 3 4 # 15 "/usr/include/sys/param.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 4 # 16 "/usr/include/sys/procfs.h" 3 4 # 1 "/usr/include/cygwin/core_dump.h" 1 3 4 # 16 "/usr/include/cygwin/core_dump.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 1 3 4 # 16 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/windows.h" 3 # 47 "/usr/lib/gcc/i686-pc-cygwin/3.4.... ... ead_info { DWORD tid; BOOL is_active_thread; CONTEXT thread_context; } __attribute__ ((packed)) ; struct win32_core_module_info { void* base_address; int module_name_size; char module_name[1]; } __attribute__ ((packed)) ; struct win32_pstatus { unsigned long data_type; union { struct win32_core_process_info process_info; struct win32_core_thread_info thread_info; struct win32_core_module_info module_info; } data ; } __attribute__ ((packed)) ; typedef struct win32_pstatus win32_pstatus_t ; # 17 "/usr/include/sys/procfs.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 14 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/... ... im_t rlim_max; }; struct rusage { struct timeval ru_utime; struct timeval ru_stime; long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; int getrlimit (int __resource, struct rlimit *__rlp); int setrlimit (int __resource, const struct rlimit *__rlp); int getrusage (int __who, struct rusage *__rusage); int getpriority (int which, id_t who); int setpriority (int which, id_t who, int value); # 4 "conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/in... ... "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 9 "/usr/include/sys/times.h" 2 3 4 typedef unsigned long clock_t; struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; clock_t __attribute__((__cdecl__)) times (struct tms *); # 4 "conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 18 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[20]; char nodename[20]; char release[20]; char version[20]; char machine[20]; }; int uname (struct utsname *); # 4 "conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... y (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); const char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 99 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 100 "/usr/include/string.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 183 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 4 "conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 14 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 15 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # ... ... int sendmsg(int s, const struct msghdr *msg, int flags); int sendto (int, const void *, int __len, int __flags, const struct sockaddr *__to, int __tolen); int setsockopt (int __s, int __level, int __optname, const void *optval, int __optlen); int getsockopt (int __s, int __level, int __optname, void *__optval, int *__optlen); int shutdown (int, int); int socket (int __family, int __type, int __protocol); int socketpair (int __domain, int __type, int __protocol, int *__socket_vec); struct servent *getservbyname (const char *__name, const char *__proto); # 4 "conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 14 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cy... ... /usr/include/sys/wait.h" 2 3 4 # 41 "/usr/include/sys/wait.h" 3 4 pid_t wait (int *); pid_t waitpid (pid_t, int *, int); pid_t wait3 (int *__status, int __options, struct rusage *__rusage); pid_t wait4 (pid_t __pid, int *__status, int __options, struct rusage *__rusage); union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 4 "conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 14 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/cygwin/in.h" 1 3 4 # 21 "/usr/include/cygwin/in.h" 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 18 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef long int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uin... ... unsigned short int __ntohs(unsigned short int); extern __inline__ unsigned long int __constant_ntohl(unsigned long int); extern __inline__ unsigned short int __constant_ntohs(unsigned short int); extern __inline__ unsigned long int __ntohl(unsigned long int x) { __asm__("xchgb %b0,%h0\n\t" "rorl $16,%0\n\t" "xchgb %b0,%h0" :"=q" (x) : "0" (x)); return x; } extern __inline__ unsigned short int __ntohs(unsigned short int x) { __asm__("xchgb %b0,%h0" : "=q" (x) : "0" (x)); return x; } # 179 "/usr/include/cygwin/in.h" 2 3 4 # 15 "/usr/include/netinet/in.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 73 "/usr/include/netdb.h" 3 4 struct hostent { const char *h_name; char **h_aliases; short h_addrtype; short h_length; char **h_addr_list; }; struct netent { char *n_name; char **n_aliases; short n_addrtype; unsigned long n_net; }; struct servent { char *s_name; char **s_aliases; short s_port; char *s_proto; }; struct protoent { char *p_name; char **p_aliases; short p_proto; }; struct rpcent { c... ... tent *getnetent (void); struct protoent *getprotobyname (const char *); struct protoent *getprotobynumber (int); struct protoent *getprotoent (void); struct servent *getservbyname (const char *, const char *); struct servent *getservbyport (int, const char *); struct servent *getservent (void); struct rpcent *getrpcent (void); struct rpcent *getrpcbyname (const char *); struct rpcent *getrpcbynumber (int); const char *hstrerror (int); void herror (const char *); void sethostent (int); void setnetent (int); void setprotoent (int); void setservent (int); void setrpcent (int); # 4 "conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: Direct.h: No such file or directory ret = 256 error message = {conftest.c:3:20: Direct.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_... ... d, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *evp, timer_t *timerid); int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *value, struct itimerspec *ovalue); int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 1 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 4 # 13 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/winsock2.h" 1 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/winsock2.h" 3 4 # 18 "/usr/lib/gcc/i68... ... i_canonname; struct sockaddr *ai_addr; struct addrinfo *ai_next; }; # 322 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/Ws2tcpip.h" 3 struct sockaddr_in6_old { short sin6_family; u_short sin6_port; u_long sin6_flowinfo; struct in6_addr sin6_addr; }; typedef union sockaddr_gen{ struct sockaddr Address; struct sockaddr_in AddressIn; struct sockaddr_in6_old AddressIn6; } sockaddr_gen; typedef struct _INTERFACE_INFO { u_long iiFlags; sockaddr_gen iiAddress; sockaddr_gen iiBroadcastAddress; sockaddr_gen iiNetmask; } INTERFACE_INFO, *LPINTERFACE_INFO; # 4 "conftest.c" 2 Defined "HAVE_WS2TCPIP_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 167 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 168 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr... ... thread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 373 "/usr/include/sys/types.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/WindowsX.h" 1 3 4 # 5 "/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../include/w32api/WindowsX.h" 3 # 4 "conftest.c" 2 Defined "HAVE_WINDOWSX_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:157) TESTING: checkRecursiveMacros from config.headers(python/BuildSystem/config/headers.py:157) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: ================================================================================ TEST checkMemcmp from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:79) TESTING: checkMemcmp from config.functions(python/BuildSystem/config/functions.py:79) Check for 8-bit clean memcmp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: ================================================================================ TEST checkSysinfo from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:102) TESTING: checkSysinfo from config.functions(python/BuildSystem/config/functions.py:102) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for function sysinfo sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sysinfo' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sysinfo' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sysinfo(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sysinfo) || defined (__stub___sysinfo) choke me #else sysinfo(); #endif ; return 0; } ================================================================================ TEST checkVPrintf from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(python/BuildSystem/config/functions.py:125) Checking for function vprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'vprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char vprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_vprintf) || defined (__stub___vprintf) choke me #else vprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_VPRINTF" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: ================================================================================ TEST checkSignalHandlerType from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:132) TESTING: checkSignalHandlerType from config.functions(python/BuildSystem/config/functions.py:132) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:142) TESTING: checkFreeReturnType from config.functions(python/BuildSystem/config/functions.py:142) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:6: error: void value not ignored as it ought to be } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sbreak' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sbreak' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_task_info' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_task_info' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__ACCESS" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__GETCWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'memmove' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sigset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sigset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sigset) || defined (__stub___sigset) choke me #else sigset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__SLEEP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'snprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_snprintf) || defined (__stub___snprintf) choke me #else snprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__fullpath' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__fullpath' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__LSEEK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_stricmp' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_stricmp' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'bzero' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_bzero) || defined (__stub___bzero) choke me #else bzero(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memcpy' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memcpy' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__ACCESS" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__GETCWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'memmove' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sigset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sigset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sigset) || defined (__stub___sigset) choke me #else sigset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__SLEEP" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'snprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_snprintf) || defined (__stub___snprintf) choke me #else snprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__fullpath' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__fullpath' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE__LSEEK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_stricmp' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_stricmp' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function 'bzero' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_bzero) || defined (__stub___bzero) choke me #else bzero(); #endif ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memcpy' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memcpy' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__intel_fast_memset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sbreak' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_sbreak' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_task_info' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_task_info' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(python/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(python/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: sigfpe.h: No such file or directory ret = 256 error message = {conftest.c:3:20: sigfpe.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:19: fpxcp.h: No such file or directory ret = 256 error message = {conftest.c:3:19: fpxcp.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:27: floatingpoint.h: No such file or directory ret = 256 error message = {conftest.c:3:27: floatingpoint.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/fortranCommandLine.py:26) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(python/PETSc/utilities/fortranCommandLine.py:26) Check for the mechanism to retrieve command line arguments in Fortran Pushing language C Checking for function _gfortran_iargc sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__gfortran_iargc' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `__gfortran_iargc' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _gfortran_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) choke me #else _gfortran_iargc(); #endif ; return 0; } Checking for function ipxfargc_ sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_ipxfargc_' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_ipxfargc_' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char ipxfargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) choke me #else ipxfargc_(); #endif ; return 0; } Checking for function f90_unix_MP_iargc sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_f90_unix_MP_iargc' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_f90_unix_MP_iargc' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char f90_unix_MP_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) choke me #else f90_unix_MP_iargc(); #endif ; return 0; } Checking for function PXFGETARG sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:20: undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } Checking for function GETARG@16 sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c:10: error: stray '@' in program conftest.c:10: error: parse error before numeric constant conftest.c:17:27: missing ')' after "defined" conftest.c:17:28: missing binary operator before token "16" conftest.c: In function `main': conftest.c:20: error: stray '@' in program conftest.c:20: error: `GETARG' undeclared (first use in this function) conftest.c:20: error: (Each undeclared identifier is reported only once conftest.c:20: error: for each function it appears in.) conftest.c:20: error: parse error before numeric constant } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char GETARG@16(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG@16(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) choke me #else GETARG@16(); #endif ; return 0; } Compile failed inside link Popping language C ================================================================================ TEST checkSizeTypes from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:42) TESTING: checkSizeTypes from config.types(python/BuildSystem/config/types.py:42) Checks for types associated with sizes, such as size_t. Checking for type: size_t sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:47) TESTING: checkFileTypes from config.types(python/BuildSystem/config/types.py:47) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkPID from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:53) TESTING: checkPID from config.types(python/BuildSystem/config/types.py:53) Checks for pid_t, and defines it if necessary Checking for type: pid_t sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:57) TESTING: checkUID from config.types(python/BuildSystem/config/types.py:57) Checks for uid_t and gid_t, and defines them if necessary sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 sys/types.h ================================================================================ TEST checkSignal from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:64) TESTING: checkSignal from config.types(python/BuildSystem/config/types.py:64) Checks the return type of signal() and defines RETSIGTYPE to that type name sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkComplex from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:85) TESTING: checkComplex from config.types(python/BuildSystem/config/types.py:85) Check for complex numbers in namespace std, and if --enable-complex is given, defines PETSC_USE_COMPLEX if they are present Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Defined "HAVE_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:110) TESTING: checkFortranKind from config.types(python/BuildSystem/config/types.py:110) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.F: In program `main': conftest.F:3: integer(kind=selected_int_kind(10)) i ^ Invalid declaration of or reference to symbol `selected_int_kind' at (^) [initially seen at (^)] conftest.F:4: real(kind=selected_real_kind(10)) d ^ Invalid declaration of or reference to symbol `selected_real_kind' at (^) [initially seen at (^)] In file included from conftest.F:0: conftest.F:4: warning: unused variable 'd' conftest.F:3: warning: unused variable 'i' } Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:122) TESTING: checkFortranDReal from config.types(python/BuildSystem/config/types.py:122) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g conftest.o sh: Popping language FC ================================================================================ TEST checkConst from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:130) TESTING: checkConst from config.types(python/BuildSystem/config/types.py:130) Checks for working const, and if not found defines it to empty string sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:34: warning: declaration of 'x' shadows a previous local conftest.c:7: warning: shadowed declaration is here conftest.c:40: warning: declaration of 'p' shadows a previous local conftest.c:10: warning: shadowed declaration is here } Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:186) TESTING: checkEndian from config.types(python/BuildSystem/config/types.py:186) If the machine is big endian, defines WORDS_BIGENDIAN sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:9: error: `not' undeclared (first use in this function) conftest.c:9: error: (Each undeclared identifier is reported only once conftest.c:9: error: for each function it appears in.) conftest.c:9: error: parse error before "big" } Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_VOID_P" to "4" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_LONG" to "4" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:239) TESTING: checkSizeof from config.types(python/BuildSystem/config/types.py:239) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/types.py:281) TESTING: checkBitsPerByte from config.types(python/BuildSystem/config/types.py:281) Determine the nubmer of bits per byte and define BITS_PER_BYTE sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -lfpe Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST checkMath from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:176) TESTING: checkMath from config.libraries(python/BuildSystem/config/libraries.py:176) Check for sin() in libm, the math library Checking for functions ['sin', 'floor', 'log10', 'sqrt'] in library [''] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:192) TESTING: checkMathErf from config.libraries(python/BuildSystem/config/libraries.py:192) Check for erf() in libm, the math library Checking for functions ['erf'] in library [] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkDynamic from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:201) TESTING: checkDynamic from config.libraries(python/BuildSystem/config/libraries.py:201) Check for the header and libraries necessary for dynamic library manipulation Checking for functions ['dlopen'] in library ['dl'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -ldl collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -ldl collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); int main() { dlopen() ; return 0; } Popping language C Checking for header: dlfcn.h sh: /home/feap/mpich2-install/bin/mpicc -E conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 19 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *, int); extern void *dlsym (void *, const char *); extern int dlclose (void *); extern char *dlerror (void); extern void dlfork (int); # 4 "conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST configureTimers from PETSc.utilities.timer(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(python/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_GETCLOCK PETSC_USE_DCLOCK PETSC_USE_NT_TIME. Checking for functions ['MPI_CRAY_barrier'] in library [''] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_MPI_CRAY_barrier' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_MPI_CRAY_barrier' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); int main() { MPI_CRAY_barrier() ; return 0; } Popping language C Cray-MPI test failure ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:35) TESTING: configureMissingDefines from PETSc.utilities.missing(python/PETSc/utilities/missing.py:35) Checks for limits sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:45) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(python/PETSc/utilities/missing.py:45) Checks if u_short is undefined sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `foo' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:51) TESTING: configureMissingFunctions from PETSc.utilities.missing(python/PETSc/utilities/missing.py:51) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:71) TESTING: configureMissingSignals from PETSc.utilities.missing(python/PETSc/utilities/missing.py:71) Check for missing signals, and define MISSING_ if necessary sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: ================================================================================ TEST configureMissingPrototypes from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:88) TESTING: configureMissingPrototypes from PETSc.utilities.missing(python/PETSc/utilities/missing.py:88) sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:14: warning: unused variable `err' } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Pushing language Cxx sh: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc Executing: /home/feap/mpich2-install/bin/mpicxx -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.cc sh: Possible ERROR while running compiler: error message = {conftest.cc: In function `int main()': conftest.cc:14: warning: unused variable 'err' } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicxx -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language Cxx ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/missing.py:110) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(python/PETSc/utilities/missing.py:110) ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/libraryOptions.py:46) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(python/PETSc/utilities/libraryOptions.py:46) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Checking for functions ['bgl_perfctr_void'] in library [''] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_bgl_perfctr_void' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_bgl_perfctr_void' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); int main() { bgl_perfctr_void() ; return 0; } Popping language C BGL/IBM test failure Defined "USE_32BIT_INT" to "1" ================================================================================ TEST configureISColorValueType from PETSc.utilities.libraryOptions(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/utilities/libraryOptions.py:99) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(python/PETSc/utilities/libraryOptions.py:99) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_CHAR" Defined "IS_COLORING_MAX" to "255" Defined "IS_COLOR_VALUE_TYPE" to "char" ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Triangle(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.Triangle(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.TetGen(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.TetGen(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PARTY(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Matlab(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need Lgrind ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Chaco(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ccafe(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.ccafe(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need c2html ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Boost(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.Boost(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need Sowing ================================================================================ TEST configureLibrary from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:381) TESTING: configureLibrary from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:381) ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root (HPUX) ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libveclib.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libveclib.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lveclib -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root (F2C) ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libf2cblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lf2cblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lf2cblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lf2cblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lf2cblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lf2cblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libf2cblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lf2cblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lf2cblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lf2cblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lf2cblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lf2cblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libfblas.a'] ['-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFBLAS" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C ================================================================================ TEST checkESSL from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:431) TESTING: checkESSL from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:431) Check for the IBM ESSL library Checking for functions ['iessl'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libflapack.a'] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_iessl' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_iessl' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); int main() { iessl() ; return 0; } Popping language C ================================================================================ TEST checkMissing from PETSc.packages.BlasLapack(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/BlasLapack.py:437) TESTING: checkMissing from PETSc.packages.BlasLapack(python/PETSc/packages/BlasLapack.py:437) Check for missing LAPACK routines Checking for functions ['dgesvd'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dgeev'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dgetrf'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dpotrf'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions ['dpotrs'] in library ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libflapack.a'] ['/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug/libfblas.a', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32', '-L/home/feap/mpich2-install/lib', '-lpmpich', '-lmpich', '-lfrtbegin', '-lg2c', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4', '-L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../..', '-lcygwin', '-luser32', '-ladvapi32', '-lshell32'] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lflapack -Wl,-rpath,/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -L/home/feap/Library/petsc-2.3.1-p5/externalpackages/fblaslapack/cygwin-c-real-debug -lfblas -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 -L/home/feap/mpich2-install/lib -lpmpich -lmpich -lfrtbegin -lg2c -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.UMFPACK(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.UMFPACK(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.babel(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.babel(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureLibrary from PETSc.packages.X11(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/X11.py:91) TESTING: configureLibrary from PETSc.packages.X11(python/PETSc/packages/X11.py:91) Checks for X windows, sets PETSC_HAVE_X11 if found, and defines X_CFLAGS, X_PRE_LIBS, X_LIBS, and X_EXTRA_LIBS sh: xmkmf Executing: xmkmf sh: imake -DUseInstalled -I/usr/X11R6/lib/X11/config sh: /usr/bin/make acfindx Executing: /usr/bin/make acfindx sh: X_INCLUDE_ROOT = /usr/X11R6/include X_USR_LIB_DIR = /usr/X11R6/lib X_LIB_DIR = /usr/X11R6/lib/X11 Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:5: warning: implicit declaration of function `XSetForeground' } Source: #include "confdefs.h" #include "conffix.h" int main() { XSetForeground(); ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/usr/X11R6/lib -lX11 Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o -L/usr/X11R6/lib -lX11 sh: Popping language C Found X11 includes and libraries Substituting "X_CFLAGS" with "-I/usr/X11R6/include" Substituting "X_LIBS" with "-L/usr/X11R6/lib -lX11" Substituting "X_PRE_LIBS" with "" Substituting "X_EXTRA_LIBS" with "" Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:479) TESTING: configureLibrary from PETSc.packages.MPI(python/PETSc/packages/MPI.py:479) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in User specified root directory MPI: [] ================================================================================ TEST check from config.libraries(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/libraries.py:107) TESTING: check from config.libraries(python/BuildSystem/config/libraries.py:107) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['MPI_Init', 'MPI_Comm_create'] in library [] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Popping language C Checking for headers User specified root directory MPI: ['/home/feap/mpich2-install/include', '/home/feap/mpich2-install/include'] ================================================================================ TEST checkInclude from config.headers(/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/headers.py:46) TESTING: checkInclude from config.headers(python/BuildSystem/config/headers.py:46) Checks if a particular include file can be found along particular include paths sh: /home/feap/mpich2-install/bin/mpicc -E -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -E -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/home/feap/mpich2-install/include/mpi.h" 1 # 24 "/home/feap/mpich2-install/include/mpi.h" typedef int MPI_Datatype; # 95 "/home/feap/mpich2-install/include/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; # 115 "/home/feap/mpich2-install/include/mpi.h" typedef struct ADIOI_FileD *MPI_File; typedef int MPI_Op; # 187 "/home/feap/mpich2-install/include/mpi.h" typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2 } MPIR_Topo... ... st *, int *, MPI_Status *); int PMPI_Wait(MPI_Request *, MPI_Status *); int PMPIO_Testall(int, MPI_Request *, int *, MPI_Status *); int PMPIO_Waitall(int, MPI_Request *, MPI_Status *); int PMPIO_Testany(int, MPI_Request *, int *, int *, MPI_Status *); int PMPIO_Waitany(int, MPI_Request *, int *, MPI_Status *); int PMPIO_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *); int PMPIO_Testsome(int, MPI_Request *, int *, int *, MPI_Status *); MPI_Fint PMPIO_Request_c2f(MPI_Request); MPI_Request PMPIO_Request_f2c(MPI_Fint); # 1105 "/home/feap/mpich2-install/include/mpi.h" 2 # 4 "conftest.c" 2 Found header files ['mpi.h'] in ['/home/feap/mpich2-install/include', '/home/feap/mpich2-install/include'] ================================================================================ TEST configureConversion from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:152) TESTING: configureConversion from PETSc.packages.MPI(python/PETSc/packages/MPI.py:152) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Defined "HAVE_MPI_COMM_F2C" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Defined "HAVE_MPI_COMM_C2F" to "1" sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureTypes from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:172) TESTING: configureTypes from PETSc.packages.MPI(python/PETSc/packages/MPI.py:172) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMissingPrototypes from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:199) TESTING: configureMissingPrototypes from PETSc.packages.MPI(python/PETSc/packages/MPI.py:199) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:450) TESTING: SGIMPICheck from PETSc.packages.MPI(python/PETSc/packages/MPI.py:450) Returns true if SGI MPI is used Checking for functions ['MPI_SGI_barrier'] in library [] [] Pushing language C sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Possible ERROR while running linker: conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_MPI_SGI_barrier' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o: In function `main': /home/feap/Library/petsc-2.3.1-p5/conftest.c:7: undefined reference to `_MPI_SGI_barrier' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); int main() { MPI_SGI_barrier() ; return 0; } Popping language C SGI MPI test failure ================================================================================ TEST FortranMPICheck from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:460) TESTING: FortranMPICheck from PETSc.packages.MPI(python/PETSc/packages/MPI.py:460) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h Checking for functions [''] in library [] [] Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Popping language FC Checking for fortran mpi_init() Checking for functions [''] in library [] [] Pushing language FC sh: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.F Executing: /home/feap/mpich2-install/bin/mpif77 -c -o conftest.o -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.F sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o Executing: /home/feap/mpich2-install/bin/mpif77 -o conftest.exe -Wall -g -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.o sh: Popping language FC Popping language FC ================================================================================ TEST checkSharedLibrary from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:110) TESTING: checkSharedLibrary from PETSc.packages.MPI(python/PETSc/packages/MPI.py:110) Check that the libraries for MPI are shared libraries ================================================================================ TEST configureMPIRUN from PETSc.packages.MPI(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/MPI.py:122) TESTING: configureMPIRUN from PETSc.packages.MPI(python/PETSc/packages/MPI.py:122) Checking for mpirun Pushing language C Popping language C Checking for program /home/feap/mpich2-install/bin/mpiexec...found Defined make macro "MPIRUN" to "/home/feap/mpich2-install/bin/mpiexec " sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a Executing: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 -I/home/feap/mpich2-install/include -I/home/feap/mpich2-install/include conftest.c sh: Pushing language C Popping language C sh: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a Executing: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a sh: sh: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c Executing: /home/feap/mpich2-install/bin/mpicc -c -o conftest.o -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o Executing: /home/feap/mpich2-install/bin/mpicc -o conftest.exe -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -Wno-strict-aliasing -g3 conftest.o sh: Executing: /home/feap/mpich2-install/bin/mpiexec -np 1 ./conftest.exe sh: /home/feap/mpich2-install/bin/mpiexec -np 1 ./conftest.exe Executing: /home/feap/mpich2-install/bin/mpiexec -np 1 ./conftest.exe sh: mpiexec_lele: cannot connect to local mpd (/tmp/mpd2.console_feap); possible causes: 1. no mpd is running on this host 2. an mpd is running but was started without a "console" (-n option) ERROR while running executable: Could not execute '/home/feap/mpich2-install/bin/mpiexec -np 1 ./conftest.exe': mpiexec_lele: cannot connect to local mpd (/tmp/mpd2.console_feap); possible causes: 1. no mpd is running on this host 2. an mpd is running but was started without a "console" (-n option) Library was not shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sundials(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.sundials(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spooles(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.spooles(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spai(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.spai(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PLAPACK(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:366) TESTING: alternateConfigureLibrary from PETSc.packages.PLAPACK(python/PETSc/package.py:366) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.ParMetis(/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py:323) TESTING: configureLibrary from PETSc.packages.ParMetis(python/PETSc/package.py:323) Find an installation ando check if it can work with PETSc ================================================================================== Checking for a functional ParMetis ================================================================================= Configuring and compiling ParMetis; this may take several minutes ================================================================================= ********************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): --------------------------------------------------------------------------------------- Error running configure on ParMetis: /usr/bin/ar: no operation specified ********************************************************************************* File "./config/configure.py", line 166, in petsc_configure File "/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/framework.py", line 807, in configure child.configure() File "/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py", line 396, in configure self.executeTest(self.configureLibrary) File "/home/feap/Library/petsc-2.3.1-p5/python/BuildSystem/config/base.py", line 90, in executeTest return apply(test, args,kargs) File "/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py", line 345, in configureLibrary for location, dir, lib, incl in self.generateGuesses(): File "/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py", line 215, in generateGuesses dir = self.checkDownload(1) File "/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py", line 210, in checkDownload return self.getInstallDir() File "/home/feap/Library/petsc-2.3.1-p5/python/PETSc/package.py", line 186, in getInstallDir return os.path.abspath(os.path.join(self.Install(),self.arch.arch)) File "/home/feap/Library/petsc-2.3.1-p5/python/PETSc/packages/ParMetis.py", line 49, in Install raise RuntimeError('Error running configure on ParMetis: '+str(e))