[petsc-users] Install PETSc with option `--with-shared-libraries=1` failed on MacOS
Zongze Yang
yangzongze at gmail.com
Sun Mar 17 09:50:07 CDT 2024
After removing OpenBLAS, everything is working fine. Thanks!
Best wishes,
Zongze
> On 17 Mar 2024, at 22:23, Pierre Jolivet <pierre at joliv.et> wrote:
>
> Ah, my bad, I misread linux-opt-arm as a macOS runner, no wonder the option is not helping…
> Take Barry’s advice.
> Furthermore, it looks like OpenBLAS people are steering in the opposite direction as us, by forcing the use of ld-classic https://urldefense.us/v3/__https://github.com/OpenMathLib/OpenBLAS/commit/103d6f4e42fbe532ae4ea48e8d90d7d792bc93d2__;!!G_uCfscf7eWS!ayl2seevZWjJZO9OMKEHMo_bZDQOX3aAF1By7x_1x9rbjOmrQ2DwsX1KitiUFsStTf9_ThHAAHkgb1dIJmTSF9Qa$ , so that’s another good argument in favor of -framework Accelerate.
>
> Thanks,
> Pierre
>
> PS: anyone benchmarked those https://urldefense.us/v3/__https://developer.apple.com/documentation/accelerate/sparse_solvers__;!!G_uCfscf7eWS!ayl2seevZWjJZO9OMKEHMo_bZDQOX3aAF1By7x_1x9rbjOmrQ2DwsX1KitiUFsStTf9_ThHAAHkgb1dIJrPiSsuB$ ? I didn’t even know they existed.
>
>> On 17 Mar 2024, at 3:06 PM, Zongze Yang <yangzongze at gmail.com> wrote:
>>
>> This Message Is From an External Sender
>> This message came from outside your organization.
>> Understood. Thank you for your advice.
>>
>> Best wishes,
>> Zongze
>>
>>> On 17 Mar 2024, at 22:04, Barry Smith <bsmith at petsc.dev <mailto:bsmith at petsc.dev>> wrote:
>>>
>>>
>>> I would just avoid the --download-openblas option. The BLAS/LAPACK provided by Apple should perform fine, perhaps even better than OpenBLAS on your system.
>>>
>>>
>>>> On Mar 17, 2024, at 9:58 AM, Zongze Yang <yangzongze at gmail.com <mailto:yangzongze at gmail.com>> wrote:
>>>>
>>>> This Message Is From an External Sender
>>>> This message came from outside your organization.
>>>> Adding the flag `--download-openblas-make-options=TARGET=GENERIC` did not resolve the issue. The same error persisted.
>>>>
>>>> Best wishes,
>>>> Zongze
>>>>
>>>>> On 17 Mar 2024, at 20:58, Pierre Jolivet <pierre at joliv.et <mailto:pierre at joliv.et>> wrote:
>>>>>
>>>>>
>>>>>
>>>>>> On 17 Mar 2024, at 1:04 PM, Zongze Yang <yangzongze at gmail.com <mailto:yangzongze at gmail.com>> wrote:
>>>>>>
>>>>>> Thank you for providing the instructions. I try the first option.
>>>>>>
>>>>>> Now, the error of the configuration is related to OpenBLAS.
>>>>>> Add `--CFLAGS=-Wno-int-conversion` to configure command resolve this. Should this be reported to OpenBLAS? Or need to fix the configure in petsc?
>>>>>
>>>>> I see our linux-opt-arm runner is using the additional flag '--download-openblas-make-options=TARGET=GENERIC', could you maybe try to add that as well?
>>>>> I don’t think there is much to fix on our end, OpenBLAS has been very broken lately on arm (current version is 0.3.26 but we can’t update because there is a huge performance regression which makes the pipeline timeout).
>>>>>
>>>>> Thanks,
>>>>> Pierre
>>>>>
>>>>>>
>>>>>> The configure.log is attached. The errors are show below:
>>>>>> ```
>>>>>> src/lapack_wrappers.c:570:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
>>>>>> RELAPACK_sgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
>>>>>> ^~~~
>>>>>> &
>>>>>> src/../inc/relapack.h:74:216: note: passing argument to parameter here
>>>>>> void RELAPACK_sgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const float *, const float *, const blasint *, const float *, const blasint *, const float *, float *, const blasint *);
>>>>>> ^
>>>>>> src/lapack_wrappers.c:583:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
>>>>>> RELAPACK_dgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
>>>>>> ^~~~
>>>>>> &
>>>>>> src/../inc/relapack.h:75:221: note: passing argument to parameter here
>>>>>> void RELAPACK_dgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const double *, const double *, const blasint *, const double *, const blasint *, const double *, double *, const blasint *);
>>>>>> ^
>>>>>> src/lapack_wrappers.c:596:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
>>>>>> RELAPACK_cgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
>>>>>> ^~~~
>>>>>> &
>>>>>> src/../inc/relapack.h:76:216: note: passing argument to parameter here
>>>>>> void RELAPACK_cgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const float *, const float *, const blasint *, const float *, const blasint *, const float *, float *, const blasint *);
>>>>>> ^
>>>>>> src/lapack_wrappers.c:609:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
>>>>>> RELAPACK_zgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
>>>>>> ^~~~
>>>>>> &
>>>>>> src/../inc/relapack.h:77:221: note: passing argument to parameter here
>>>>>> void RELAPACK_zgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const double *, const double *, const blasint *, const double *, const blasint *, const double *, double *, const blasint *);
>>>>>> ^
>>>>>> 4 errors generated.
>>>>>> ```
>>>>>>
>>>>>> Best wishes,
>>>>>> Zongze
>>>>>>
>>>>>> <configure.log.tar.gz>
>>>>>>
>>>>>>> On 17 Mar 2024, at 18:48, Pierre Jolivet <pierre at joliv.et <mailto:pierre at joliv.et>> wrote:
>>>>>>>
>>>>>>> You need this MR https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7365__;!!G_uCfscf7eWS!ayl2seevZWjJZO9OMKEHMo_bZDQOX3aAF1By7x_1x9rbjOmrQ2DwsX1KitiUFsStTf9_ThHAAHkgb1dIJpz1zt2Q$ <https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7365__;!!G_uCfscf7eWS!eCQRfbol7FDQiO0o78iDit2saij_ydIUtCfRQnsQAt-h_YcXr2Yi2BFnFnqHZp0FO3Lhpyr2RKdHZ-T-OF94HpwQ$>
>>>>>>> main has been broken for macOS since https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7341__;!!G_uCfscf7eWS!ayl2seevZWjJZO9OMKEHMo_bZDQOX3aAF1By7x_1x9rbjOmrQ2DwsX1KitiUFsStTf9_ThHAAHkgb1dIJu7sVyGp$ <https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7341__;!!G_uCfscf7eWS!eCQRfbol7FDQiO0o78iDit2saij_ydIUtCfRQnsQAt-h_YcXr2Yi2BFnFnqHZp0FO3Lhpyr2RKdHZ-T-OIhlJwLx$>, so the alternative is to revert to the commit prior.
>>>>>>> It should work either way.
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Pierre
>>>>>>>
>>>>>>>> On 17 Mar 2024, at 11:31 AM, Zongze Yang <yangzongze at gmail.com <mailto:yangzongze at gmail.com>> wrote:
>>>>>>>>
>>>>>>>>
>>>>>>>> This Message Is From an External Sender
>>>>>>>> This message came from outside your organization.
>>>>>>>> Hi, PETSc Team,
>>>>>>>>
>>>>>>>> I am trying to install petsc with the following configuration
>>>>>>>> ```
>>>>>>>> ./configure \
>>>>>>>> --download-bison \
>>>>>>>> --download-mpich \
>>>>>>>> --download-mpich-configure-arguments=--disable-opencl \
>>>>>>>> --download-hwloc \
>>>>>>>> --download-hwloc-configure-arguments=--disable-opencl \
>>>>>>>> --download-openblas \
>>>>>>>> --download-openblas-make-options="'USE_THREAD=0 USE_LOCKING=1 USE_OPENMP=0'" \
>>>>>>>> --with-shared-libraries=1 \
>>>>>>>> --with-fortran-bindings=0 \
>>>>>>>> --with-zlib \
>>>>>>>> LDFLAGS=-Wl,-ld_classic
>>>>>>>> ```
>>>>>>>>
>>>>>>>> The log shows that
>>>>>>>> ```
>>>>>>>> Exhausted all shared linker guesses. Could not determine how to create a shared library!
>>>>>>>> ```
>>>>>>>>
>>>>>>>> I recently updated the system and Xcode, as well as homebrew.
>>>>>>>>
>>>>>>>> The configure.log is attached.
>>>>>>>>
>>>>>>>> Thanks for your attention to this matter.
>>>>>>>>
>>>>>>>> Best wishes,
>>>>>>>> Zongze
>>>>>>>> <configure.log.tar.gz>
>
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