[petsc-users] Install PETSc with option `--with-shared-libraries=1` failed on MacOS
Barry Smith
bsmith at petsc.dev
Sun Mar 17 09:04:16 CDT 2024
I would just avoid the --download-openblas option. The BLAS/LAPACK provided by Apple should perform fine, perhaps even better than OpenBLAS on your system.
> On Mar 17, 2024, at 9:58 AM, Zongze Yang <yangzongze at gmail.com> wrote:
>
> This Message Is From an External Sender
> This message came from outside your organization.
> Adding the flag `--download-openblas-make-options=TARGET=GENERIC` did not resolve the issue. The same error persisted.
>
> Best wishes,
> Zongze
>
>> On 17 Mar 2024, at 20:58, Pierre Jolivet <pierre at joliv.et <mailto:pierre at joliv.et>> wrote:
>>
>>
>>
>>> On 17 Mar 2024, at 1:04 PM, Zongze Yang <yangzongze at gmail.com <mailto:yangzongze at gmail.com>> wrote:
>>>
>>> Thank you for providing the instructions. I try the first option.
>>>
>>> Now, the error of the configuration is related to OpenBLAS.
>>> Add `--CFLAGS=-Wno-int-conversion` to configure command resolve this. Should this be reported to OpenBLAS? Or need to fix the configure in petsc?
>>
>> I see our linux-opt-arm runner is using the additional flag '--download-openblas-make-options=TARGET=GENERIC', could you maybe try to add that as well?
>> I don’t think there is much to fix on our end, OpenBLAS has been very broken lately on arm (current version is 0.3.26 but we can’t update because there is a huge performance regression which makes the pipeline timeout).
>>
>> Thanks,
>> Pierre
>>
>>>
>>> The configure.log is attached. The errors are show below:
>>> ```
>>> src/lapack_wrappers.c:570:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
>>> RELAPACK_sgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
>>> ^~~~
>>> &
>>> src/../inc/relapack.h:74:216: note: passing argument to parameter here
>>> void RELAPACK_sgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const float *, const float *, const blasint *, const float *, const blasint *, const float *, float *, const blasint *);
>>> ^
>>> src/lapack_wrappers.c:583:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
>>> RELAPACK_dgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
>>> ^~~~
>>> &
>>> src/../inc/relapack.h:75:221: note: passing argument to parameter here
>>> void RELAPACK_dgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const double *, const double *, const blasint *, const double *, const blasint *, const double *, double *, const blasint *);
>>> ^
>>> src/lapack_wrappers.c:596:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
>>> RELAPACK_cgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
>>> ^~~~
>>> &
>>> src/../inc/relapack.h:76:216: note: passing argument to parameter here
>>> void RELAPACK_cgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const float *, const float *, const blasint *, const float *, const blasint *, const float *, float *, const blasint *);
>>> ^
>>> src/lapack_wrappers.c:609:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
>>> RELAPACK_zgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
>>> ^~~~
>>> &
>>> src/../inc/relapack.h:77:221: note: passing argument to parameter here
>>> void RELAPACK_zgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const double *, const double *, const blasint *, const double *, const blasint *, const double *, double *, const blasint *);
>>> ^
>>> 4 errors generated.
>>> ```
>>>
>>> Best wishes,
>>> Zongze
>>>
>>> <configure.log.tar.gz>
>>>
>>>> On 17 Mar 2024, at 18:48, Pierre Jolivet <pierre at joliv.et <mailto:pierre at joliv.et>> wrote:
>>>>
>>>> You need this MR https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7365__;!!G_uCfscf7eWS!eOGIcMBe3EV8va7MfOwaPaSEEZWB0R4RNvzMgW8PRyySg08UkUdgsHoooFig3Oai-akPT9jYBu9bh5e2Mgqi_ao$ <https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7365__;!!G_uCfscf7eWS!eCQRfbol7FDQiO0o78iDit2saij_ydIUtCfRQnsQAt-h_YcXr2Yi2BFnFnqHZp0FO3Lhpyr2RKdHZ-T-OF94HpwQ$>
>>>> main has been broken for macOS since https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7341__;!!G_uCfscf7eWS!eOGIcMBe3EV8va7MfOwaPaSEEZWB0R4RNvzMgW8PRyySg08UkUdgsHoooFig3Oai-akPT9jYBu9bh5e2sXmUpjA$ <https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7341__;!!G_uCfscf7eWS!eCQRfbol7FDQiO0o78iDit2saij_ydIUtCfRQnsQAt-h_YcXr2Yi2BFnFnqHZp0FO3Lhpyr2RKdHZ-T-OIhlJwLx$>, so the alternative is to revert to the commit prior.
>>>> It should work either way.
>>>>
>>>> Thanks,
>>>> Pierre
>>>>
>>>>> On 17 Mar 2024, at 11:31 AM, Zongze Yang <yangzongze at gmail.com <mailto:yangzongze at gmail.com>> wrote:
>>>>>
>>>>>
>>>>> This Message Is From an External Sender
>>>>> This message came from outside your organization.
>>>>> Hi, PETSc Team,
>>>>>
>>>>> I am trying to install petsc with the following configuration
>>>>> ```
>>>>> ./configure \
>>>>> --download-bison \
>>>>> --download-mpich \
>>>>> --download-mpich-configure-arguments=--disable-opencl \
>>>>> --download-hwloc \
>>>>> --download-hwloc-configure-arguments=--disable-opencl \
>>>>> --download-openblas \
>>>>> --download-openblas-make-options="'USE_THREAD=0 USE_LOCKING=1 USE_OPENMP=0'" \
>>>>> --with-shared-libraries=1 \
>>>>> --with-fortran-bindings=0 \
>>>>> --with-zlib \
>>>>> LDFLAGS=-Wl,-ld_classic
>>>>> ```
>>>>>
>>>>> The log shows that
>>>>> ```
>>>>> Exhausted all shared linker guesses. Could not determine how to create a shared library!
>>>>> ```
>>>>>
>>>>> I recently updated the system and Xcode, as well as homebrew.
>>>>>
>>>>> The configure.log is attached.
>>>>>
>>>>> Thanks for your attention to this matter.
>>>>>
>>>>> Best wishes,
>>>>> Zongze
>>>>> <configure.log.tar.gz>
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