[petsc-users] MPI_Iprobe Error with MUMPS Solver on Multi-Nodes

Mon May 22 16:31:32 CDT 2023

If I may add to the discussion, it may be that you are going OOM since you
are trying to factorize a 3 million dofs problem, this problem goes
undetected and then fails at a later stage

Il giorno lun 22 mag 2023 alle ore 20:03 Zongze Yang <yangzongze at gmail.com>
ha scritto:

> Thanks!
>
> Zongze
>
> Matthew Knepley <knepley at gmail.com>于2023年5月23日 周二00:09写道：
>
>> On Mon, May 22, 2023 at 11:07 AM Zongze Yang <yangzongze at gmail.com>
>> wrote:
>>
>>> Hi,
>>>
>>> I hope this letter finds you well. I am writing to seek guidance
>>> regarding an error I encountered while solving a matrix using MUMPS on
>>> multiple nodes:
>>>
>>
>> Iprobe is buggy on several MPI implementations. PETSc has an option for
>> shutting it off for this reason.
>> I do not know how to shut it off inside MUMPS however. I would mail their
>> mailing list to see.
>>
>>   Thanks,
>>
>>      Matt
>>
>>
>>> ```bash
>>> Abort(1681039) on node 60 (rank 60 in comm 240): Fatal error in
>>> PMPI_Iprobe: Other MPI error, error stack:
>>> PMPI_Iprobe(124)..............: MPI_Iprobe(src=MPI_ANY_SOURCE,
>>> tag=MPI_ANY_TAG, comm=0xc4000026, flag=0x7ffc130f9c4c,
>>> status=0x7ffc130f9e80) failed
>>> MPID_Iprobe(240)..............:
>>> MPIDI_iprobe_safe(108)........:
>>> MPIDI_iprobe_unsafe(35).......:
>>> MPIDI_OFI_do_iprobe(69).......:
>>> MPIDI_OFI_handle_cq_error(949): OFI poll failed
>>> (ofi_events.c:951:MPIDI_OFI_handle_cq_error:Input/output error)
>>> Assertion failed in file src/mpid/ch4/netmod/ofi/ofi_events.c at line
>>> 125: 0
>>> ```
>>>
>>> The matrix in question has a degree of freedom (dof) of 3.86e+06.
>>> Interestingly, when solving smaller-scale problems, everything functions
>>> perfectly without any issues. However, when attempting to solve the larger
>>> matrix on multiple nodes, I encounter the aforementioned error.
>>>
>>> The complete error message I received is as follows:
>>> ```bash
>>> Abort(1681039) on node 60 (rank 60 in comm 240): Fatal error in
>>> PMPI_Iprobe: Other MPI error, error stack:
>>> PMPI_Iprobe(124)..............: MPI_Iprobe(src=MPI_ANY_SOURCE,
>>> tag=MPI_ANY_TAG, comm=0xc4000026, flag=0x7ffc130f9c4c,
>>> status=0x7ffc130f9e80) failed
>>> MPID_Iprobe(240)..............:
>>> MPIDI_iprobe_safe(108)........:
>>> MPIDI_iprobe_unsafe(35).......:
>>> MPIDI_OFI_do_iprobe(69).......:
>>> MPIDI_OFI_handle_cq_error(949): OFI poll failed
>>> (ofi_events.c:951:MPIDI_OFI_handle_cq_error:Input/output error)
>>> Assertion failed in file src/mpid/ch4/netmod/ofi/ofi_events.c at line
>>> 125: 0
>>> /nfs/opt/cascadelake/linux-centos7-cascadelake/gcc-9.4.0/mpich-3.4.2-qgtz76gekvjzuacy7wq5a26rqlewoxfc/lib/libmpi.so.12(MPL_backtrace_show+0x26)
>>> [0x7f6076063f2c]
>>> /nfs/opt/cascadelake/linux-centos7-cascadelake/gcc-9.4.0/mpich-3.4.2-qgtz76gekvjzuacy7wq5a26rqlewoxfc/lib/libmpi.so.12(+0x41dc24)
>>> [0x7f6075fc5c24]
>>> /nfs/opt/cascadelake/linux-centos7-cascadelake/gcc-9.4.0/mpich-3.4.2-qgtz76gekvjzuacy7wq5a26rqlewoxfc/lib/libmpi.so.12(+0x49cc51)
>>> [0x7f6076044c51]
>>> /nfs/opt/cascadelake/linux-centos7-cascadelake/gcc-9.4.0/mpich-3.4.2-qgtz76gekvjzuacy7wq5a26rqlewoxfc/lib/libmpi.so.12(+0x49f799)
>>> [0x7f6076047799]
>>> /nfs/opt/cascadelake/linux-centos7-cascadelake/gcc-9.4.0/mpich-3.4.2-qgtz76gekvjzuacy7wq5a26rqlewoxfc/lib/libmpi.so.12(+0x451e18)
>>> [0x7f6075ff9e18]
>>> /nfs/opt/cascadelake/linux-centos7-cascadelake/gcc-9.4.0/mpich-3.4.2-qgtz76gekvjzuacy7wq5a26rqlewoxfc/lib/libmpi.so.12(+0x452272)
>>> [0x7f6075ffa272]
>>> /nfs/opt/cascadelake/linux-centos7-cascadelake/gcc-9.4.0/mpich-3.4.2-qgtz76gekvjzuacy7wq5a26rqlewoxfc/lib/libmpi.so.12(+0x2ce836)
>>> [0x7f6075e76836]
>>> /nfs/opt/cascadelake/linux-centos7-cascadelake/gcc-9.4.0/mpich-3.4.2-qgtz76gekvjzuacy7wq5a26rqlewoxfc/lib/libmpi.so.12(+0x2ce90d)
>>> [0x7f6075e7690d]
>>> /nfs/opt/cascadelake/linux-centos7-cascadelake/gcc-9.4.0/mpich-3.4.2-qgtz76gekvjzuacy7wq5a26rqlewoxfc/lib/libmpi.so.12(+0x48137b)
>>> [0x7f607602937b]
>>> /nfs/opt/cascadelake/linux-centos7-cascadelake/gcc-9.4.0/mpich-3.4.2-qgtz76gekvjzuacy7wq5a26rqlewoxfc/lib/libmpi.so.12(+0x44d471)
>>> [0x7f6075ff5471]
>>> /nfs/opt/cascadelake/linux-centos7-cascadelake/gcc-9.4.0/mpich-3.4.2-qgtz76gekvjzuacy7wq5a26rqlewoxfc/lib/libmpi.so.12(+0x407acd)
>>> [0x7f6075fafacd]
>>> /nfs/opt/cascadelake/linux-centos7-cascadelake/gcc-9.4.0/mpich-3.4.2-qgtz76gekvjzuacy7wq5a26rqlewoxfc/lib/libmpi.so.12(MPIR_Err_return_comm+0x10a)
>>> [0x7f6075fafbea]
>>> /nfs/opt/cascadelake/linux-centos7-cascadelake/gcc-9.4.0/mpich-3.4.2-qgtz76gekvjzuacy7wq5a26rqlewoxfc/lib/libmpi.so.12(MPI_Iprobe+0x312)
>>> [0x7f6075ddd542]
>>> /nfs/opt/cascadelake/linux-centos7-cascadelake/gcc-9.4.0/mpich-3.4.2-qgtz76gekvjzuacy7wq5a26rqlewoxfc/lib/libmpifort.so.12(pmpi_iprobe+0x2f)
>>> [0x7f606e08f19f]
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/mumps-5.5.1-gb7wlwxwbalf5rw5vkp6gtkhfkdqpntz/lib/libzmumps.so(__zmumps_load_MOD_zmumps_load_recv_msgs+0x142)
>>> [0x7f60737b194d]
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/mumps-5.5.1-gb7wlwxwbalf5rw5vkp6gtkhfkdqpntz/lib/libzmumps.so(zmumps_try_recvtreat_+0x34)
>>> [0x7f60738ab735]
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/mumps-5.5.1-gb7wlwxwbalf5rw5vkp6gtkhfkdqpntz/lib/libzmumps.so(__zmumps_fac_par_m_MOD_zmumps_fac_par+0x991)
>>> [0x7f607378bcc8]
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/mumps-5.5.1-gb7wlwxwbalf5rw5vkp6gtkhfkdqpntz/lib/libzmumps.so(zmumps_fac_par_i_+0x240)
>>> [0x7f6073881d36]
>>> Abort(805938831) on node 51 (rank 51 in comm 240): Fatal error in
>>> PMPI_Iprobe: Other MPI error, error stack:
>>> PMPI_Iprobe(124)..............: MPI_Iprobe(src=MPI_ANY_SOURCE,
>>> tag=MPI_ANY_TAG, comm=0xc4000017, flag=0x7ffe20e1402c,
>>> status=0x7ffe20e14260) failed
>>> MPID_Iprobe(244)..............:
>>> progress_test(100)............:
>>> MPIDI_OFI_handle_cq_error(949): OFI poll failed
>>> (ofi_events.c:951:MPIDI_OFI_handle_cq_error:Input/output error)
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/mumps-5.5.1-gb7wlwxwbalf5rw5vkp6gtkhfkdqpntz/lib/libzmumps.so(zmumps_fac_b_+0x1463)
>>> [0x7f60738831a1]
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/mumps-5.5.1-gb7wlwxwbalf5rw5vkp6gtkhfkdqpntz/lib/libzmumps.so(zmumps_fac_driver_+0x6969)
>>> [0x7f60738446c9]
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/mumps-5.5.1-gb7wlwxwbalf5rw5vkp6gtkhfkdqpntz/lib/libzmumps.so(zmumps_+0x2d83)
>>> [0x7f60738bf9cf]
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/mumps-5.5.1-gb7wlwxwbalf5rw5vkp6gtkhfkdqpntz/lib/libzmumps.so(zmumps_f77_+0x178c)
>>> [0x7f60738c33bc]
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/mumps-5.5.1-gb7wlwxwbalf5rw5vkp6gtkhfkdqpntz/lib/libzmumps.so(zmumps_c+0x8f8)
>>> [0x7f60738baacb]
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/petsc-develop-5wrc3y6lyelr3iyrlm3sr2jlh2wxif3k/lib/libpetsc.so.3.019(+0x894560)
>>> [0x7f6077297560]
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/petsc-develop-5wrc3y6lyelr3iyrlm3sr2jlh2wxif3k/lib/libpetsc.so.3.019(MatLUFactorNumeric+0x32e)
>>> [0x7f60773bb1e6]
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/petsc-develop-5wrc3y6lyelr3iyrlm3sr2jlh2wxif3k/lib/libpetsc.so.3.019(+0xf51665)
>>> [0x7f6077954665]
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/petsc-develop-5wrc3y6lyelr3iyrlm3sr2jlh2wxif3k/lib/libpetsc.so.3.019(PCSetUp+0x64b)
>>> [0x7f60779c77e0]
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/petsc-develop-5wrc3y6lyelr3iyrlm3sr2jlh2wxif3k/lib/libpetsc.so.3.019(KSPSetUp+0xfb6)
>>> [0x7f6077ac2d53]
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/petsc-develop-5wrc3y6lyelr3iyrlm3sr2jlh2wxif3k/lib/libpetsc.so.3.019(+0x10c1c28)
>>> [0x7f6077ac4c28]
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/petsc-develop-5wrc3y6lyelr3iyrlm3sr2jlh2wxif3k/lib/libpetsc.so.3.019(KSPSolve+0x13)
>>> [0x7f6077ac8070]
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/petsc-develop-5wrc3y6lyelr3iyrlm3sr2jlh2wxif3k/lib/libpetsc.so.3.019(+0x11249df)
>>> [0x7f6077b279df]
>>> /nfs/home/zzyang/opt/software/linux-centos7-cascadelake/gcc-9.4.0/petsc-develop-5wrc3y6lyelr3iyrlm3sr2jlh2wxif3k/lib/libpetsc.so.3.019(SNESSolve+0x10df)
>>> [0x7f6077b676c6]
>>> Abort(1) on node 60: Internal error
>>> Abort(1007265423) on node 65 (rank 65 in comm 240): Fatal error in
>>> PMPI_Iprobe: Other MPI error, error stack:
>>> PMPI_Iprobe(124)..............: MPI_Iprobe(src=MPI_ANY_SOURCE,
>>> tag=MPI_ANY_TAG, comm=0xc4000017, flag=0x7fff4d82827c,
>>> status=0x7fff4d8284b0) failed
>>> MPID_Iprobe(244)..............:
>>> progress_test(100)............:
>>> MPIDI_OFI_handle_cq_error(949): OFI poll failed
>>> (ofi_events.c:951:MPIDI_OFI_handle_cq_error:Input/output error)
>>> Abort(941205135) on node 32 (rank 32 in comm 240): Fatal error in
>>> PMPI_Iprobe: Other MPI error, error stack:
>>> PMPI_Iprobe(124)..............: MPI_Iprobe(src=MPI_ANY_SOURCE,
>>> tag=MPI_ANY_TAG, comm=0xc4000017, flag=0x7fff715ba3fc,
>>> status=0x7fff715ba630) failed
>>> MPID_Iprobe(240)..............:
>>> MPIDI_iprobe_safe(108)........:
>>> MPIDI_iprobe_unsafe(35).......:
>>> MPIDI_OFI_do_iprobe(69).......:
>>> MPIDI_OFI_handle_cq_error(949): OFI poll failed
>>> (ofi_events.c:951:MPIDI_OFI_handle_cq_error:Input/output error)
>>> Abort(470941839) on node 75 (rank 75 in comm 0): Fatal error in
>>> PMPI_Test: Other MPI error, error stack:
>>> PMPI_Test(188)................: MPI_Test(request=0x7efe31e03014,
>>> flag=0x7ffea65d673c, status=0x7ffea65d6760) failed
>>> MPIR_Test(73).................:
>>> MPIR_Test_state(33)...........:
>>> progress_test(100)............:
>>> MPIDI_OFI_handle_cq_error(949): OFI poll failed
>>> (ofi_events.c:951:MPIDI_OFI_handle_cq_error:Input/output error)
>>> Abort(805946511) on node 31 (rank 31 in comm 256): Fatal error in
>>> PMPI_Probe: Other MPI error, error stack:
>>> PMPI_Probe(118)...............: MPI_Probe(src=MPI_ANY_SOURCE, tag=7,
>>> comm=0xc4000015, status=0x7fff9538b7a0) failed
>>> MPID_Probe(159)...............:
>>> progress_test(100)............:
>>> MPIDI_OFI_handle_cq_error(949): OFI poll failed
>>> (ofi_events.c:951:MPIDI_OFI_handle_cq_error:Input/output error)
>>> Abort(1179791) on node 73 (rank 73 in comm 0): Fatal error in PMPI_Test:
>>> Other MPI error, error stack:
>>> PMPI_Test(188)................: MPI_Test(request=0x5b638d4,
>>> flag=0x7ffd755119cc, status=0x7ffd755121b0) failed
>>> MPIR_Test(73).................:
>>> MPIR_Test_state(33)...........:
>>> progress_test(100)............:
>>> MPIDI_OFI_handle_cq_error(949): OFI poll failed
>>> (ofi_events.c:951:MPIDI_OFI_handle_cq_error:Input/output error)
>>> ```
>>>
>>> Thank you very much for your time and consideration.
>>>
>>> Best wishes,
>>> Zongze
>>>
>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
>>
>> https://www.cse.buffalo.edu/~knepley/
>> <http://www.cse.buffalo.edu/~knepley/>
>>
> --
> Best wishes,
> Zongze
>

-- 
Stefano
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