[petsc-users] Compiling PETSC with Intel OneAPI compilers and OpenMPI

[Matthew Knepley]

On Mon, May 15, 2023 at 11:19 AM Vanella, Marcos (Fed) via petsc-users <
petsc-users at mcs.anl.gov> wrote:

> Hello, I'm trying to compile the PETSc library version 3.19.1 with OpenMPI
> 4.1.4 and the OneAPI 2022 Update 2 Intel Compiler suite on a Mac with OSX
> Ventura 13.3.1.
> I can compile PETSc in debug mode with this configure and make lines. I
> can run the PETSC tests, which seem fine.
> When I compile the library in optimized mode, either using -O3 or O1, for
> example configuring with:
>

I hate to yell "compiler bug" when this happens, but it sure seems like
one. Can you just use

  --with-debugging=0

without the custom COPTFLAGS, CXXOPTFLAGS, FOPTFLAGS? If that works, it is
almost
certainly a compiler bug. If not, then we can go in the debugger and see
what is failing.

  Thanks,

    Matt


> $ ./configure --prefix=/opt/petsc-oneapi22u3
> --with-blaslapack-dir=/opt/intel/oneapi/mkl/2022.2.1 COPTFLAGS='-m64 -O1 -g
> -diag-disable=10441' CXXOPTFLAGS='-m64 -O1 -g -diag-disable=10441'
> FOPTFLAGS='-m64 -O1 -g' LDFLAGS='-m64' --with-debugging=0
> --with-shared-libraries=0 --download-make
>
> and using mpicc (icc), mpif90 (ifort) from  Open MPI, the static lib
> compiles. Yet, I see right off the bat this segfault error in the first
> PETSc example:
>
> $ make PETSC_DIR=/Users/mnv/Documents/Software/petsc-3.19.1
> PETSC_ARCH=arch-darwin-c-opt test
> /Users/mnv/Documents/Software/petsc-3.19.1/arch-darwin-c-opt/bin/make
> --no-print-directory -f
> /Users/mnv/Documents/Software/petsc-3.19.1/gmakefile.test
> PETSC_ARCH=arch-darwin-c-opt
> PETSC_DIR=/Users/mnv/Documents/Software/petsc-3.19.1 test
> /opt/intel/oneapi/intelpython/latest/bin/python3
> /Users/mnv/Documents/Software/petsc-3.19.1/config/gmakegentest.py
> --petsc-dir=/Users/mnv/Documents/Software/petsc-3.19.1
> --petsc-arch=arch-darwin-c-opt --testdir=./arch-darwin-c-opt/tests
> Using MAKEFLAGS: --no-print-directory -- PETSC_ARCH=arch-darwin-c-opt
> PETSC_DIR=/Users/mnv/Documents/Software/petsc-3.19.1
>          CC arch-darwin-c-opt/tests/sys/classes/draw/tests/ex1.o
> In file included from
> /Users/mnv/Documents/Software/petsc-3.19.1/include/petscsys.h(44),
>                  from
> /Users/mnv/Documents/Software/petsc-3.19.1/src/sys/classes/draw/tests/ex1.c(4):
> /Users/mnv/Documents/Software/petsc-3.19.1/include/petscsystypes.h(68):
> warning #2621: attribute "warn_unused_result" does not apply here
>   PETSC_ERROR_CODE_TYPEDEF enum PETSC_ERROR_CODE_NODISCARD {
>                                 ^
>
>     CLINKER arch-darwin-c-opt/tests/sys/classes/draw/tests/ex1
>        TEST
> arch-darwin-c-opt/tests/counts/sys_classes_draw_tests-ex1_1.counts
> not ok sys_classes_draw_tests-ex1_1 *# Error code: 139*
> *# [excess:98681] *** Process received signal ****
> *# [excess:98681] Signal: Segmentation fault: 11 (11)*
> *# [excess:98681] Signal code: Address not mapped (1)*
> *# [excess:98681] Failing at address: 0x7f*
> *# [excess:98681] *** End of error message ****
> #
> --------------------------------------------------------------------------
> # Primary job  terminated normally, but 1 process returned
> # a non-zero exit code. Per user-direction, the job has been aborted.
> #
> --------------------------------------------------------------------------
> #
> --------------------------------------------------------------------------
> # mpiexec noticed that process rank 0 with PID 0 on node excess exited on
> signal 11 (Segmentation fault: 11).
> #
> --------------------------------------------------------------------------
>  ok sys_classes_draw_tests-ex1_1 # SKIP Command failed so no diff
>
> I see the same segfault error in all PETSc examples.
> Any help is mostly appreciated, I'm starting to work with PETSc. Our plan
> is to use the linear solver from PETSc for the Poisson equation on our
> numerical scheme and test this on a GPU cluster. So also, any guideline on
> how to interface PETSc with a fortran code and personal experience is also
> most appreciated!
>
> Marcos
>
>
>
>

-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener

https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>
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