[petsc-users] Local size 7 not compatible with block size 13
Jay Jay Billings
billingsjj at ornl.gov
Thu Jan 16 19:49:42 CST 2014
Barry,
Thanks very much. I'll check it out in the morning and let you know.
Jay
On 01/16/2014 07:53 PM, Barry Smith wrote:
> Sorry,
>
> It is now fixed.
>
> After you pull you should rerun your ./configure with the additional options —download-superlu_dist —download-parmetis —download-metis
>
> Then when you run the code use the additional option -pc_factor_mat_solver_package superlu_dist so it will do the parallel direct solver for you.
>
> Barry
>
> On Jan 16, 2014, at 2:35 PM, Jay Jay Billings <billingsjj at ornl.gov> wrote:
>
>> Hi Barry,
>>
>> It still fails in cd0e7f7. Error message below.
>>
>> Jay
>>
>> [1]PETSC ERROR: --------------------- Error Message ------------------------------------
>> [1]PETSC ERROR: Arguments are incompatible!
>> [1]PETSC ERROR: Local size 7 not compatible with block size 13!
>> [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------
>> [0]PETSC ERROR: Arguments are incompatible!
>> [0]PETSC ERROR: Local size 7 not compatible with block size 13!
>> [0]PETSC ERROR: ------------------------------------------------------------------------
>> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600
>> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>> [0]PETSC ERROR: See docs/index.html for manual pages.
>> [0]PETSC ERROR: ------------------------------------------------------------------------
>> [0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Thu Jan 16 15:31:56 2014
>> ------------------------------------------------------------------------
>> [1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600
>> [1]PETSC ERROR: See docs/changes/index.html for recent updates.
>> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>> [1]PETSC ERROR: See docs/index.html for manual pages.
>> [1]PETSC ERROR: ------------------------------------------------------------------------
>> [1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Thu Jan 16 15:31:56 2014
>> [1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib
>> [1]PETSC ERROR: Configure run at Thu Jan 16 14:29:58 2014
>> [1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0
>> [1]PETSC ERROR: ------------------------------------------------------------------------
>> [1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c
>> [1]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>> [0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib
>> [0]PETSC ERROR: Configure run at Thu Jan 16 14:29:58 2014
>> [0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0
>> [0]PETSC ERROR: ------------------------------------------------------------------------
>> [0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c
>> [1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c
>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>> [1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c
>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>> [1]PETSC ERROR: [0]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>> [0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c
>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>> TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>> [1]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>> [1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c
>> [1]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>> [0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c
>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>> [0]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>> [1]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c
>> [1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c
>> [1]PETSC ERROR: [0]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>> [0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c
>> [0]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>> SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c
>> [1]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c
>> [1]PETSC ERROR: [0]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c
>> [0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c
>> [0]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c
>> [0]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c
>> TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>> [1]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>> [1]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp
>> [0]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>> [0]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>> [0]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp
>>
>>
>> On 01/16/2014 08:55 AM, Jay J. Billings wrote:
>>> Thanks very much Barry. I'll check it out.
>>>
>>> Jay
>>>
>>> On 01/15/2014 09:35 PM, Barry Smith wrote:
>>>> This is now fixed in master and next
>>>>
>>>> On Jan 15, 2014, at 4:06 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:
>>>>
>>>>> Jay,
>>>>>
>>>>> This is our bug. We’ll need to figure out the fix and get back to you.
>>>>>
>>>>> Barry
>>>>>
>>>>> On Jan 15, 2014, at 1:14 PM, Jay J. Billings <billingsjj at ornl.gov> wrote:
>>>>>
>>>>>> Everyone,
>>>>>>
>>>>>> I'm trying to run PETSc in parallel and I'm getting an error I haven't seen before that the local and block size arguments don't match. Can anyone point me in the right direction on this? It happens right after I call TSSolve and, according to the backtrace, when TSSolve is trying to form the Jacobian. It doesn't look like it is actually calling my Jacobian routine, although I could be wrong about that.
>>>>>>
>>>>>> Jay
>>>>>>
>>>>>> [1]PETSC ERROR: --------------------- Error Message ------------------------------------
>>>>>> [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------
>>>>>> [0]PETSC ERROR: Arguments are incompatible!
>>>>>> [1]PETSC ERROR: Arguments are incompatible!
>>>>>> [0]PETSC ERROR: Local size 7 not compatible with block size 13!
>>>>>> [1]PETSC ERROR: Local size 7 not compatible with block size 13!
>>>>>> [0]PETSC ERROR: ------------------------------------------------------------------------
>>>>>> [1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500
>>>>>> [1]PETSC ERROR: See docs/changes/index.html for recent updates.
>>>>>> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>>>>>> [1]PETSC ERROR: See docs/index.html for manual pages.
>>>>>> [1]PETSC ERROR: ------------------------------------------------------------------------
>>>>>> [1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014
>>>>>> [1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib
>>>>>> [1]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014
>>>>>> [1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0
>>>>>> [1]PETSC ERROR: ------------------------------------------------------------------------
>>>>>> [1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c
>>>>>> [1]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>>>>>> [1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c
>>>>>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>>>>>> [1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c
>>>>>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>>>>>> [1]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>>>> [1]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>>>> [1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c
>>>>>> [1]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>>>> [1]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c
>>>>>> [1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c
>>>>>> [1]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c
>>>>>> [1]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c
>>>>>> [1]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>>>> [1]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>>>> [1]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp
>>>>>> ------------------------------------------------------------------------
>>>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500
>>>>>> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
>>>>>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>>>>>> [0]PETSC ERROR: See docs/index.html for manual pages.
>>>>>> [0]PETSC ERROR: ------------------------------------------------------------------------
>>>>>> [0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014
>>>>>> [0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib
>>>>>> [0]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014
>>>>>> [0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0
>>>>>> [0]PETSC ERROR: ------------------------------------------------------------------------
>>>>>> [0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c
>>>>>> [0]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>>>>>> [0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c
>>>>>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>>>>>> [0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c
>>>>>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c
>>>>>> [0]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>>>> [0]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>>>> [0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c
>>>>>> [0]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>>>> [0]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c
>>>>>> [0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c
>>>>>> [0]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c
>>>>>> [0]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c
>>>>>> [0]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>>>> [0]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c
>>>>>> [0]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp
>>>>>>
>>>>>> --
>>>>>> Jay Jay Billings
>>>>>> Oak Ridge National Laboratory
>>>>>> Twitter Handle: @jayjaybillings
>>>>>>
--
Jay Jay Billings
Oak Ridge National Laboratory
Telephone: (865) 272-9420
Email:billingsjj at ornl.gov
Twitter Handle: @jayjaybillings
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