[petsc-users] Fwd: PETSc installation on Intrepid

Satish Balay balay at mcs.anl.gov
Mon Jul 29 14:25:44 CDT 2013 

>>>>>>
mpixlf2003_r -qnosave -c  -O3 -qarch=450d -qtune=450 -qmaxmem=-1   -I/gpfs/home/jkumar/lib/petsc-hg/include -I/gpfs/home/jkumar/lib/petsc-hg/arch-bgp-ibm-opt/i\
nclude -I/soft/apps/current/hdf5-1.8.9/include -I/bgsys/drivers/V1R4M2_200_2010-100508P/ppc/comm/default/include -I/bgsys/drivers/V1R4M2_200_2010-100508P/ppc/c\
omm/sys/include   -I. -DMUALEM_SPLINE -DICE -o utility.o utility.F90
bgxlf2003_r: 1501-214 (W) command option M reserved for future use - ignored
"utility.F90", line 61.14: 1516-036 (S) Entity M1 has undefined type.
"utility.F90", line 62.14: 1516-036 (S) Entity IA1 has undefined type.
"utility.F90", line 63.14: 1516-036 (S) Entity IC1 has undefined type.
"utility.F90", line 65.14: 1516-036 (S) Entity M2 has undefined type.
"utility.F90", line 66.14: 1516-036 (S) Entity IA2 has undefined type.
"utility.F90", line 67.14: 1516-036 (S) Entity IC2 has undefined type.
"utility.F90", line 69.14: 1516-036 (S) Entity M3 has undefined type.
"utility.F90", line 70.14: 1516-036 (S) Entity IA3 has undefined type.
"utility.F90", line 71.14: 1516-036 (S) Entity IC3 has undefined type.
"utility.F90", 1520-031 (W) Option DLINES is ignored within Fortran 90 free form and IBM free form.
** Utility_module   === End of Compilation 1 ===
1501-511  Compilation failed for file utility.F90.
<<<<<<

On Mon, 29 Jul 2013, Jitendra Kumar wrote:

> Satish,
> By building my own zlib library specifying it through LIBS flag to PETSc
> configure, I was able to compile PETSC-Dev with HDF5 support on Intrepid.
> However, I ran into errors while building my application and it looks like
> the XLF Fortran is using case sensitive settings and is failing due to
> mixed uppercase/lowercase variable names in the code.

Are you sure this is the problem? I can't reporduce it with a simple code..


Satish

--------
[balay at vestalac1 junk]$ cat foo.F
       program main
       implicit none
       integer i
       I=5
       write(*,*) I
       end
[balay at vestalac1 junk]$ mpixlf2003_r  foo.F
** main   === End of Compilation 1 ===
1501-510  Compilation successful for file foo.F.
[balay at vestalac1 junk]$ ./a.out 
 5


> 
> I have followed the
> /soft/apps/libraries/petsc/3.3-p6/xl-opt/conf/reconfigure-arch-bgp-ibm-opt.py
> and am not sure if there's something included or missing in the
> configuration causing this. I believe default is for XLF to not to be case
> sensitive, but I am not sure what do I have that's making it otherwise.
> 
> I would appreciate if you can point me to anything I may be missing in my
> configuration file. Attached are petsc configuration file and log of my
> application compilation errors.
> 
> Thanks,
> Jitu
> 
> 
> 
> On Tue, Jul 16, 2013 at 12:59 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> 
> > --download-package might not work on all machines. --download-hdf5=1 does
> > not work on bg/p
> >
> > However there is hdf5 installed on it. You can try using
> > --with-hdf5-include/--with-hdf5-lib options.
> >
> > There could still be an issue with "Compression library [libz.a or
> > equivalent] not found" but I think the workarround is already in
> > petsc-dev.
> >
> > Satish
> >
> >
> >
> > On Tue, 16 Jul 2013, Jitendra Kumar wrote:
> >
> > > Thanks Satish. I tried using the configuration you pointed me to with the
> > > addition of --download-hdf5=1 and got error "Compression library [libz.a
> > or
> > > equivalent] not found
> > > "
> > >
> > > Do I need to load some package to get this?
> > >
> > > Jitu
> > >
> > >
> > > On Tue, Jul 16, 2013 at 11:59 AM, Satish Balay <balay at mcs.anl.gov>
> > wrote:
> > >
> > > > As the message indicates you need '--with-batch' option on this machine
> > > >
> > > > Check one of the default builds on intrepid for configure options to
> > use..
> > > >
> > > > [perhaps
> > > >
> > /soft/apps/libraries/petsc/3.3-p6/xl-opt/conf/reconfigure-arch-bgp-ibm-opt.py]
> > > >
> > > > Satish
> > > >
> > > > On Tue, 16 Jul 2013, Jitendra Kumar wrote:
> > > >
> > > > > I ran into following errors while trying to build PETSc-dev on
> > Intrepid
> > > > > @ALCF.  (configure.log attached)
> > > > >
> > > > >
> > > >
> > *******************************************************************************
> > > > >          UNABLE to CONFIGURE with GIVEN OPTIONS    (see
> > configure.log for
> > > > > details):
> > > > >
> > > >
> > -------------------------------------------------------------------------------
> > > > > Cannot run executable to determine size of char. If this machine
> > uses a
> > > > > batch system
> > > > > to submit jobs you will need to configure using ./configure with the
> > > > > additional option  --with-batch.
> > > > >  Otherwise there is problem with the compilers. Can you compile and
> > run
> > > > > code with your C/C++ (and maybe Fortran) compilers?
> > > > >
> > > >
> > *******************************************************************************
> > > > >   File "/gpfs/home/jkumar/lib/petsc/config/configure.py", line 293,
> > in
> > > > > petsc_configure
> > > > >     framework.configure(out = sys.stdout)
> > > > >   File
> > > > > "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/framework.py",
> > > > line
> > > > > 933, in configure
> > > > >     child.configure()
> > > > >   File
> > "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/types.py",
> > > > > line 386, in configure
> > > > >     map(lambda type: self.executeTest(self.checkSizeof, type),
> > > > > ['char','void *', 'short', 'int', 'long', 'long long', 'float',
> > 'double',
> > > > > 'size_t'])
> > > > >   File
> > "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/types.py",
> > > > > line 386, in <lambda>
> > > > >     map(lambda type: self.executeTest(self.checkSizeof, type),
> > > > > ['char','void *', 'short', 'int', 'long', 'long long', 'float',
> > 'double',
> > > > > 'size_t'])
> > > > >   File
> > "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/base.py",
> > > > > line 115, in executeTest
> > > > >     ret = apply(test, args,kargs)
> > > > >   File
> > "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/types.py",
> > > > > line 296, in checkSizeof
> > > > >     raise RuntimeError(msg)
> > > > >
> > > > > This is what my configuration looks like (adapted from
> > > > > config/examples/arch-bgp-ibm-opt.py)
> > > > > configure_options = [
> > > > >   '--with-cc=mpixlc',
> > > > >   '--with-fc=mpixlf90',
> > > > >   '--with-cxx=mpixlcxx',
> > > > >   'COPTFLAGS=-O3',
> > > > >   'FOPTFLAGS=-O3',
> > > > >   '--with-debugging=0',
> > > > >   '--with-cmake=/soft/apps/fen/cmake-2.8.3/bin/cmake',
> > > > > #  '--with-hdf5=/soft/apps/hdf5-1.8.0',
> > > > >   '--download-parmetis=1',
> > > > >   '--download-metis=1',
> > > > >   '--download-plapack=1',
> > > > >   '--download-hdf5=1'
> > > > >   ]
> > > > >
> > > > > I would appreciate any help building the llbrary there.
> > > > >
> > > > > Thanks,
> > > > > Jitu
> > > > >
> > > >
> > > >
> > >
> >
> >
>

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