[petsc-users] configuration question

Matthew Knepley knepley at gmail.com
Tue Jul 9 12:35:53 CDT 2013


On Tue, Jul 9, 2013 at 12:30 PM, Michael Povolotskyi <mpovolot at purdue.edu>wrote:

> Dear Petsc developers and users,
> I have a problem with petsc configuration:
>
> I want to execute the following
>
> ./config/configure.py --with-x=0 --with-hdf5 --download-hdf5=1
> --with-scalar-type=complex --with-single-library=0 --with-pic=1
> --with-shared-libraries=0 --with-clanguage=C++ --with-fortran
> --with-debugging=1 --with-cc="/opt/intel/impi/4.**1.0/intel64/bin/mpicc"
> --with-fc="/opt/intel/impi/4.**1.0/intel64/bin/mpif90"
> --with-cxx="/opt/intel/impi/4.**1.0/intel64/bin/mpicxx " COPTFLAGS="-O3"
> CXXOPTFLAGS="-O3" FOPTFLAGS="-O3" --LDFLAGS=-Wl,-rpath,/opt/**intel/mkl//lib/intel64
> -L/opt/intel/mkl//lib/intel64 -Wl,--start-group -lmkl_intel_lp64
> -lmkl_sequential -lmkl_core -Wl,--end-group  --download-metis=1
> --download-parmetis=1  --download-mumps=1 --download-scalapack=1
> --with-blas-lapack-dir=/opt/**intel/mkl/ --download-blacs=1;
>

You need "" around your LDFLAGS argument

  Matt


> I get the following error:
> ==============================**==============================**
> ===================
>              Configuring PETSc to compile on your system
> ==============================**==============================**
> ===================
> ****************************************************************
> *******************
>                 ERROR in COMMAND LINE ARGUMENT to ./configure
> ------------------------------**------------------------------**
> -------------------
> The option -lmkl_intel_lp64 should probably be -lmkl-intel-lp64
> ****************************************************************
> *******************
>
>
> What is the meaning of that message?
> I checked in my file system and the file names contain "_" instead of "-"
>
> ls /opt/intel/mkl//lib/intel64/**libmkl_intel_lp64.*
> /opt/intel/mkl//lib/intel64/**libmkl_intel_lp64.a
> /opt/intel/mkl//lib/intel64/**libmkl_intel_lp64.so
>
> Thank you,
> Michael.
>
> --
> Michael Povolotskyi, PhD
> Research Assistant Professor
> Network for Computational Nanotechnology
> 207 S Martin Jischke Drive
> Purdue University, DLR, room 441-10
> West Lafayette, Indiana 47907
>
> phone: +1-765-494-9396
> fax: +1-765-496-6026
>
>


-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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