[petsc-users] configuration on hopper at nersc

[Jed Brown]

George Pau <gpau at lbl.gov> writes:

> I am using the gnu compiler and it is of version 4.1.40, if that is
> relevant.  

No, you are not.

 Executing: /opt/cray/xt-asyncpe/5.19/bin/cc --version
 sh: gcc (GCC) 4.7.2 20120920 (Cray Inc.)
 Copyright (C) 2012 Free Software Foundation, Inc.
 This is free software; see the source for copying conditions.  There is NO
 warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.



In the past, --with-batch has been needed on Hopper.  Here's a configure
script that you could use:


#!/usr/common/usg/python/2.7.1/bin/python
if __name__ == '__main__':
  import sys
  import os
  sys.path.insert(0, os.path.abspath('config'))
  import configure
  configure_options = [
    '--download-metis',
    '--download-ml',
    '--download-mumps',
    '--download-parmetis',
    '--download-scalapack',
    '--download-superlu_dist',
    '--known-bits-per-byte=8',
    '--known-level1-dcache-assoc=2',
    '--known-level1-dcache-linesize=64',
    '--known-level1-dcache-size=65536',
    '--known-memcmp-ok=1',
    '--known-mpi-c-double-complex=1',
    '--known-mpi-long-double=1',
    '--known-mpi-shared-libraries',
    '--known-sizeof-MPI_Comm=4',
    '--known-sizeof-MPI_Fint=4',
    '--known-sizeof-char=1',
    '--known-sizeof-double=8',
    '--known-sizeof-float=4',
    '--known-sizeof-int=4',
    '--known-sizeof-long-long=8',
    '--known-sizeof-long=8',
    '--known-sizeof-short=2',
    '--known-sizeof-size_t=8',
    '--known-sizeof-void-p=8',
    '--with-batch',
    '--with-debugging=0',
    'CC=/opt/cray/xt-asyncpe/5.19/bin/cc',
    'COPTFLAGS=-O -g',
    'CXX=/opt/cray/xt-asyncpe/5.19/bin/CC',
    'FC=/opt/cray/xt-asyncpe/5.19/bin/ftn',
    'PETSC_ARCH=gnu-optg',
  ]
  configure.petsc_configure(configure_options)
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