Executing: uname -s stdout: Linux ================================================================================ ================================================================================ Starting configure run at Thu, 09 Dec 2021 07:54:32 -0800 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --CFLAGS=" -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu" --CXXFLAGS=" -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu" --FFLAGS=" -g -mp=gpu" --with-cc=cc --with-cxx=CC --with-fc=ftn --with-cudac=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc --with-debugging=0 --download-hypre=1 --with-cuda=1 --with-cuda-arch=80 --with-mpiexec=srun --with-batch=0 --download-p4est=1 --with-zlib=1 --with-make-np=8 --prefix=/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9 PETSC_ARCH=arch-perlmutter-opt-nvidia-cuda Working directory: /global/u2/m/madams/petsc Machine platform: ('Linux', 'login18', '5.3.18-24.75_10.0.190-cray_shasta_c', '#1 SMP Sun Nov 14 13:50:27 UTC 2021 (d6d9e9b)', 'x86_64', 'x86_64') Python version: 2.7.18 (default, Mar 04 2021, 23:25:57) [GCC] ================================================================================ Environmental variables CRAY_LMOD_NET=ofi/1.0 CRAY_MPICH_BASEDIR=/opt/cray/pe/mpich/8.1.11/ofi CPU=x86_64 LMOD_SITE_NAME=NERSC LESS=-M -I -R CRAY_PERFTOOLS_PREFIX=/opt/cray/pe/perftools/21.10.0 PE_LIBSCI_GENCOMPILERS_GNU_x86_64=9.1 __LMOD_REF_COUNT_MODULEPATH=/usr/share/lmod/lmod/modulefiles/Core:2;/opt/cray/pe/lmod/modulefiles/mpi/nvidia/20/ofi/1.0/cray-mpich/8.0:1;/opt/cray/pe/lmod/modulefiles/comnet/nvidia/20/ofi/1.0:1;/opt/cray/pe/lmod/modulefiles/compiler/nvidia/20:1;/opt/cray/pe/lmod/modulefiles/mix_compilers:1;/opt/cray/pe/lmod/modulefiles/perftools/21.10.0:1;/opt/cray/pe/lmod/modulefiles/net/ofi/1.0:1;/opt/cray/pe/lmod/modulefiles/cpu/x86-rome/1.0:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/opt/cray/pe/lmod/modulefiles/core:1;/opt/cray/pe/lmod/modulefiles/craype-targets/default:1;/opt/cray/modulefiles:1;/opt/modulefiles:1;/global/common/software/nersc/shasta-21.11/modulefiles:1;/global/common/software/nersc/shasta-21.11/extra_modulefiles:1 LMOD_SETTARG_FULL_SUPPORT=no PE_MPICH_GTL_DIR_amd_gfx90a=-L/opt/cray/pe/mpich/8.1.11/gtl/lib PE_MPICH_GTL_LIBS_nvidia80=-lmpi_gtl_cuda PE_LIBSCI_PKGCONFIG_LIBS=libsci_mpi:libsci NVIDIA_VERSION=21.9 PELOCAL_PRGENV=true CRAY_LIBSCI_BASE_DIR=/opt/cray/pe/libsci/21.08.1.2 CRAY_DSMML_VER=0.2.2 XKEYSYMDB=/usr/X11R6/lib/X11/XKeysymDB PAT_RT_HWPC=1 CRAY_LMOD_COMPILER=nvidia/20 SHELL=/bin/bash PE_DSMML_MODULE_NAME=cray-dsmml PE_LIBSCI_GENCOMPS_CRAY_x86_64=90 PE_PERFTOOLS_MPICH_LIBDIR=/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib __LMOD_REF_COUNT_PE_CRAYCLANG_FIXED_PKGCONFIG_PATH=/opt/cray/pe/libsci/21.08.1.2/CRAY/9.0/x86_64/lib/pkgconfig:1 XDG_DATA_DIRS=/usr/share PE_LIBSCI_GENCOMPILERS_NVIDIA_x86_64=20.7 CRAYPAT_ROOT=/opt/cray/pe/perftools/21.10.0 LMOD_SYSHOST=perlmutter LMOD_CACHED_LOADS=no DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/13302/bus CMAKE_DIR=/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0 __LMOD_REF_COUNT_PE_PRODUCT_LIST=CRAY_LIBSCI:1;CRAYPE:1;CRAYPE_X86_ROME:1;PERFTOOLS:1;CRAYPAT:1 PE_LIBSCI_GENCOMPS_NVIDIA_x86_64=207 LESS_ADVANCED_PREPROCESSOR=no CRAY_CPU_TARGET=x86-rome MANPATH=/opt/cray/pe/libsci/21.08.1.2/man:/opt/cray/pe/man/csmlversion:/opt/cray/pe/mpich/8.1.11/ofi/man:/opt/cray/pe/mpich/8.1.11/man/mpich:/opt/cray/pe/dsmml/0.2.2/dsmml/man:/opt/cray/pe/craype/2.7.12/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/man:/opt/cray/pe/perftools/21.10.0/man:/opt/cray/pe/papi/6.0.0.10/share/pdoc/man:/opt/cray/libfabric/1.11.0.4.75/share/man:/usr/share/lmod/lmod/share/man:/usr/local/man:/usr/share/man:/usr/man PETSC_OPTIONS=-use_gpu_aware_mpi 0 JAVA_HOME=/usr/lib64/jvm/java PROFILEREAD=true PE_PKGCONFIG_PRODUCTS=PE_LIBSCI:PE_MPICH:PE_DSMML:PE_XPMEM PE_MPICH_GTL_LIBS_amd_gfx908=-lmpi_gtl_hsa KMP_AFFINITY=balanced XDG_RUNTIME_DIR=/run/user/13302 PE_LIBSCI_MODULE_NAME=cray-libsci/21.08.1.2 LMOD_FAMILY_COMPILER_VERSION=21.9 PE_LIBSCI_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/libsci/21.08.1.2/@PRGENV@/@PE_LIBSCI_GENCOMPS@/@PE_LIBSCI_TARGET@/lib/pkgconfig __LMOD_REF_COUNT_CMAKE_PREFIX_PATH=/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0:1 PE_ENV=NVIDIA PE_MPICH_GTL_DIR_amd_gfx908=-L/opt/cray/pe/mpich/8.1.11/gtl/lib PE_PRODUCT_LIST=CRAY_LIBSCI:CRAYPE:CRAYPE_X86_ROME:PERFTOOLS:CRAYPAT PE_MPICH_GTL_DIR_amd_gfx906=-L/opt/cray/pe/mpich/8.1.11/gtl/lib __LMOD_REF_COUNT_CRAY_LD_LIBRARY_PATH=/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib:1;/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib:1;/opt/cray/pe/mpich/8.1.11/gtl/lib:1;/opt/cray/pe/dsmml/0.2.2/dsmml/lib:1;/opt/cray/pe/perftools/21.10.0/lib64:1 PE_LIBSCI_GENCOMPILERS_AOCC_x86_64=2.0 XDG_SESSION_ID=109 LMOD_FAMILY_COMPILER=nvidia SDK_HOME=/usr/lib64/jvm/java LIBSCI_VERSION=21.08.1.2 SVN_EDITOR=vim PE_PKGCONFIG_LIBS=darshan-runtime:libsci_mpi:libsci:mpich:dsmml __LMOD_REF_COUNT_PE_MPICH_FORTRAN_PKGCONFIG_LIBS=mpichf90:1 CRAYPE_DIR=/opt/cray/pe/craype/2.7.12 CRAY_PERFTOOLS_VERSION=21.10.0 HOSTNAME=login18 LMOD_ROOT=/usr/share/lmod _ModuleTable002_=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 PETSC_ARCH=arch-perlmutter-opt-kokkos-nvidia-cuda LMOD_PACKAGE_PATH=/global/common/software/nersc/perlmutter/shasta-21.11/lmod-configuration/sitepackages CRAYPE_NETWORK_TARGET=ofi CSHRCREAD=true MACHTYPE=x86_64-suse-linux CONDA_PYTHON_EXE=/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/python __LMOD_REF_COUNT_MANPATH=/opt/cray/pe/libsci/21.08.1.2/man:1;/opt/cray/pe/man/csmlversion:1;/opt/cray/pe/mpich/8.1.11/ofi/man:1;/opt/cray/pe/mpich/8.1.11/man/mpich:1;/opt/cray/pe/dsmml/0.2.2/dsmml/man:1;/opt/cray/pe/craype/2.7.12/man:1;/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/man:1;/opt/cray/pe/perftools/21.10.0/man:1;/opt/cray/pe/papi/6.0.0.10/share/pdoc/man:1;/opt/cray/libfabric/1.11.0.4.75/share/man:1;/usr/share/lmod/lmod/share/man:1;/usr/local/man:1;/usr/share/man:1;/usr/man:1 JAVA_ROOT=/usr/lib64/jvm/java CRAY_DSMML_PREFIX=/opt/cray/pe/dsmml/0.2.2/dsmml MINICOM=-c on CSHEDIT=emacs _CE_M= LESSOPEN=lessopen.sh %s _ModuleTable008_=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 CPATH=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include USER=madams CRAY_MPICH_DIR=/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7 __LMOD_REF_COUNT_PERL5LIB=/global/common/software/nersc/pm-2021q4/sw/darshan/perl-packages/perl-Pod-LaTeX/lib:1 CMAKE_PREFIX_PATH=/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0 PE_MPICH_PKGCONFIG_LIBS=mpich CRAY_NVIDIA_VERSION=21.9 PE_MPICH_GTL_LIBS_amd_gfx90a=-lmpi_gtl_hsa JDK_HOME=/usr/lib64/jvm/java __LMOD_REF_COUNT_LD_LIBRARY_PATH=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib:1;/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64:1;/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib:1;/opt/cray/pe/papi/6.0.0.10/lib64:1;/opt/cray/libfabric/1.11.0.4.75/lib64:1 SHLVL=1 BASH_FUNC_ml%%=() { eval $($LMOD_DIR/ml_cmd "$@") } LMOD_FAMILY_CRAYPE_NETWORK_VERSION=false __LMOD_REF_COUNT_ACLOCAL_PATH=/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/share/aclocal:1 PE_LIBSCI_PKGCONFIG_VARIABLES=PE_LIBSCI_OMP_REQUIRES_@openmp@:PE_SCI_EXT_LIBPATH:PE_SCI_EXT_LIBNAME DISPLAY=login18:11.0 CRAY_XPMEM_POST_LINK_OPTS=-L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 CRAY_LIBSCI_DIR=/opt/cray/pe/libsci/21.08.1.2 PETSC_DIR=/global/homes/m/madams/petsc __LMOD_REF_COUNT_PE_PKGCONFIG_PRODUCTS=PE_LIBSCI:1;PE_MPICH:1;PE_DSMML:1;PE_XPMEM:1 __LMOD_REF_COUNT_PE_MPICH_FIXED_PRGENV=NVIDIA:1 PERFTOOLS_VERSION=21.10.0 LMOD_FAMILY_MPI_VERSION=8.1.11 MODULESHOME=/usr/share/lmod/lmod CRAY_NVIDIA_PREFIX=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9 _ModuleTable007_=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 APP2_STATE=21.10.0 JAVA_BINDIR=/usr/lib64/jvm/java/bin LMOD_MODULERCFILE=/global/common/software/nersc/perlmutter/shasta-21.11/lmod-configuration/sitepackages/modulerc.lua __LMOD_REF_COUNT_PKG_CONFIG_PATH=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib/pkgconfig:1;/opt/cray/pe/dsmml/0.2.2/dsmml/lib/pkgconfig:1;/opt/cray/pe/craype/2.7.12/pkg-config:1;/opt/cray/libfabric/1.11.0.4.75/lib64/pkgconfig:1 _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXtbIlByZ0VudiJdPSJQcmdFbnYtbnZpZGlhIixbImNvbXBpbGVyIl09Im52aWRpYSIsWyJjcmF5cGUiXT0iY3JheXBlIixbImNyYXlwZV9jcHUiXT0iY3JheXBlLXg4Ni1yb21lIixbImNyYXlwZV9uZXR3b3JrIl09ImNyYXlwZS1uZXR3b3JrLW9maSIsWyJtcGkiXT0iY3JheS1tcGljaCIsfSxtVD17WyJQcmdFbnYtbnZpZGlhIl09e1siZm4iXT0iL29wdC9jcmF5L3BlL2xtb2QvbW9kdWxlZmlsZXMvY29yZS9QcmdFbnYtbnZpZGlhLzguMi4wLmx1YSIsWyJmdWxsTmFtZSJdPSJQcmdFbnYtbnZpZGlhLzguMi4w LMOD_VERSION=8.3.1 CRAY_LIBSCI_VERSION=21.08.1.2 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__LMOD_REF_COUNT_PATH=/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:1;/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:1;/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:1;/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:1;/global/common/software/nersc/bin:1;/opt/cray/pe/craype/2.7.12/bin:1;/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:1;/opt/cray/pe/perftools/21.10.0/bin:1;/opt/cray/pe/papi/6.0.0.10/bin:1;/opt/cray/libfabric/1.11.0.4.75/bin:1;/usr/local/bin:1;/usr/bin:1;/bin:1;/usr/lib/mit/bin:1;/opt/cray/pe/bin:1 XNLSPATH=/usr/X11R6/lib/X11/nls TMPDIR=/tmp MODULEPATH=/usr/share/lmod/lmod/modulefiles/Core:/opt/cray/pe/lmod/modulefiles/mpi/nvidia/20/ofi/1.0/cray-mpich/8.0:/opt/cray/pe/lmod/modulefiles/comnet/nvidia/20/ofi/1.0:/opt/cray/pe/lmod/modulefiles/compiler/nvidia/20:/opt/cray/pe/lmod/modulefiles/mix_compilers:/opt/cray/pe/lmod/modulefiles/perftools/21.10.0:/opt/cray/pe/lmod/modulefiles/net/ofi/1.0:/opt/cray/pe/lmod/modulefiles/cpu/x86-rome/1.0:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/opt/cray/pe/lmod/modulefiles/core:/opt/cray/pe/lmod/modulefiles/craype-targets/default:/opt/cray/modulefiles:/opt/modulefiles:/global/common/software/nersc/shasta-21.11/modulefiles:/global/common/software/nersc/shasta-21.11/extra_modulefiles _ModuleTable011_=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 PERL5LIB=/global/common/software/nersc/pm-2021q4/sw/darshan/perl-packages/perl-Pod-LaTeX/lib SSH_CONNECTION=128.55.210.211 40612 128.55.126.25 22 XDG_CONFIG_DIRS=/etc/xdg MAN_POSIXLY_CORRECT=1 LMOD_FAMILY_PRGENV=PrgEnv-nvidia PE_LIBSCI_GENCOMPILERS_CRAY_x86_64=9.0 WINDOWMANAGER=xterm LMOD_CASE_INDEPENDENT_SORTING=yes COLORTERM=1 _LMFILES_=/opt/cray/pe/lmod/modulefiles/craype-targets/default/craype-x86-rome.lua:/opt/cray/modulefiles/libfabric/1.11.0.4.75:/opt/cray/pe/lmod/modulefiles/craype-targets/default/craype-network-ofi.lua:/opt/cray/pe/lmod/modulefiles/core/perftools-base/21.10.0.lua:/opt/cray/modulefiles/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta:/opt/cray/pe/lmod/modulefiles/core/nvidia/21.9.lua:/opt/cray/pe/lmod/modulefiles/core/craype/2.7.12.lua:/opt/cray/pe/lmod/modulefiles/core/cray-dsmml/0.2.2.lua:/opt/cray/pe/lmod/modulefiles/comnet/nvidia/20/ofi/1.0/cray-mpich/8.1.11.lua:/opt/cray/pe/lmod/modulefiles/core/cray-libsci/21.08.1.2.lua:/opt/cray/pe/lmod/modulefiles/core/PrgEnv-nvidia/8.2.0.lua:/global/common/software/nersc/shasta-21.11/extra_modulefiles/xalt/2.10.2:/global/common/software/nersc/shasta-21.11/extra_modulefiles/darshan/3.2.1.lua:/global/common/software/nersc/shasta-21.11/extra_modulefiles/cmake/3.22.0.lua:/global/common/software/nersc/shasta-21.11/extra_modulefiles/python/3.9-anaconda-2021.11.lua PAGER=less PE_XPMEM_PKGCONFIG_LIBS=cray-xpmem JRE_HOME=/usr/lib64/jvm/java/jre LIBGL_DEBUG=quiet __LMOD_REF_COUNT_LOADEDMODULES=craype-x86-rome:1;libfabric/1.11.0.4.75:1;craype-network-ofi:1;perftools-base/21.10.0:1;xpmem/2.2.40-2.1_3.9__g3cf3325.shasta:1;nvidia/21.9:1;craype/2.7.12:1;cray-dsmml/0.2.2:1;cray-mpich/8.1.11:1;cray-libsci/21.08.1.2:1;PrgEnv-nvidia/8.2.0:1;xalt/2.10.2:1;darshan/3.2.1:1;cmake/3.22.0:1;python/3.9-anaconda-2021.11:1 LMOD_DIR=/usr/share/lmod/lmod/libexec CRAY_MPICH_VER=8.1.11 GIT_PS1_SHOWDIRTYSTATE=1 LMOD_RC=/global/common/software/nersc/perlmutter/shasta-21.11/lmod-configuration/sitepackages/lmodrc.lua CRAYPAT_LD_LIBRARY_PATH=/opt/cray/pe/gcc-libs:/opt/cray/gcc-libs:/opt/cray/pe/perftools/21.10.0/lib64 PE_CRAYCLANG_FIXED_PKGCONFIG_PATH=/opt/cray/pe/libsci/21.08.1.2/CRAY/9.0/x86_64/lib/pkgconfig CRAY_XPMEM_INCLUDE_OPTS=-I/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/include HUGETLB_VERBOSE=0 PYTHON_DIR=/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11 LMOD_PKG=/usr/share/lmod/lmod MODULEPATH_ROOT=/usr/share/modulefiles HOME=/global/homes/m/madams HISTSIZE=1000 LD_LIBRARY_PATH=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib:/opt/cray/pe/papi/6.0.0.10/lib64:/opt/cray/libfabric/1.11.0.4.75/lib64 LOADEDMODULES=craype-x86-rome:libfabric/1.11.0.4.75:craype-network-ofi:perftools-base/21.10.0:xpmem/2.2.40-2.1_3.9__g3cf3325.shasta:nvidia/21.9:craype/2.7.12:cray-dsmml/0.2.2:cray-mpich/8.1.11:cray-libsci/21.08.1.2:PrgEnv-nvidia/8.2.0:xalt/2.10.2:darshan/3.2.1:cmake/3.22.0:python/3.9-anaconda-2021.11 LANG=en_US.UTF-8 LMOD_FAMILY_CRAYPE=craype CONDA_SHLVL=0 PE_MPICH_GTL_DIR_nvidia70=-L/opt/cray/pe/mpich/8.1.11/gtl/lib BASH_FUNC_module%%=() { eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh) } LMOD_SYSTEM_NAME=perlmutter CRAY_DSMML_ROOTDIR=/opt/cray/pe/dsmml/0.2.2 LMOD_IGNORE_CACHE=1 G_BROKEN_FILENAMES=1 __LMOD_REF_COUNT__LMFILES_=/opt/cray/pe/lmod/modulefiles/craype-targets/default/craype-x86-rome.lua:1;/opt/cray/modulefiles/libfabric/1.11.0.4.75:1;/opt/cray/pe/lmod/modulefiles/craype-targets/default/craype-network-ofi.lua:1;/opt/cray/pe/lmod/modulefiles/core/perftools-base/21.10.0.lua:1;/opt/cray/modulefiles/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta:1;/opt/cray/pe/lmod/modulefiles/core/nvidia/21.9.lua:1;/opt/cray/pe/lmod/modulefiles/core/craype/2.7.12.lua:1;/opt/cray/pe/lmod/modulefiles/core/cray-dsmml/0.2.2.lua:1;/opt/cray/pe/lmod/modulefiles/comnet/nvidia/20/ofi/1.0/cray-mpich/8.1.11.lua:1;/opt/cray/pe/lmod/modulefiles/core/cray-libsci/21.08.1.2.lua:1;/opt/cray/pe/lmod/modulefiles/core/PrgEnv-nvidia/8.2.0.lua:1;/global/common/software/nersc/shasta-21.11/extra_modulefiles/xalt/2.10.2:1;/global/common/software/nersc/shasta-21.11/extra_modulefiles/darshan/3.2.1.lua:1;/global/common/software/nersc/shasta-21.11/extra_modulefiles/cmake/3.22.0.lua:1;/global/common/software/nersc/shasta-21.11/extra_modulefiles/python/3.9-anaconda-2021.11.lua:1 __LMOD_REF_COUNT_PE_LIBSCI_REQUIRED_PRODUCTS=PE_MPICH:1 GIT_PS1_SHOWUPSTREAM=auto PE_LIBSCI_FIXED_PRGENV=CRAYCLANG _=../arch-perlmutter-opt-nvidia-cuda.py _ModuleTable_Sz_=12 PE_FORTRAN_PKGCONFIG_LIBS=mpichf90 OSTYPE=linux _ModuleTable005_=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 LMOD_FAMILY_CRAYPE_CPU=craype-x86-rome PE_NVIDIA_FIXED_PKGCONFIG_PATH=/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib/pkgconfig PYTHONUSERBASE=/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11 CRAY_DSMML_BASEDIR=/opt/cray/pe/dsmml/0.2.2 PSCRATCH=/pscratch/sd/m/madams __LMOD_REF_COUNT_CPATH=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include:1;/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include:1 NVIDIA_PATH=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9 LMOD_FAMILY_CRAYPE_VERSION=2.7.12 G_FILENAME_ENCODING=@locale,UTF-8,ISO-8859-15,CP1252 LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod HOST=login18 LMOD_AVAIL_STYLE=grouped:system PE_LIBSCI_VOLATILE_PRGENV=AOCC CRAY GNU NVIDIA GPG_TTY=/dev/pts/2 PE_MPICH_MODULE_NAME=cray-mpich IPM_REPORT=full LMOD_FAMILY_CRAYPE_NETWORK=craype-network-ofi LESSCLOSE=lessclose.sh %s %s CMAKE_ROOT=/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0 SSH_TTY=/dev/pts/2 LMOD_FAMILY_CRAYPE_CPU_VERSION=false NERSC_HOST=perlmutter __LMOD_REF_COUNT_PE_FORTRAN_PKGCONFIG_LIBS=mpichf90:1 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PATH=/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin PE_MPICH_GTL_LIBS_amd_gfx906=-lmpi_gtl_hsa TERM=xterm-256color PS1=\A\[\033[;1m\]\[\033[35m\]$(ret=$?; [ $ret -ne 0 ] && echo -n " $ret")\[\033[;0m\] \[\033[31m\]\h \[\033[36m\]$(__git_ps1 '%s') \[\033[33m\]$NERSC_HOST:\[\033[32m\]\w\[\033[0m\]\$ TZ=America/Los_Angeles CRAY_ACCEL_TARGET= CRAY_MPICH_ROOTDIR=/opt/cray/pe/mpich/8.1.11 NVHPC=/opt/nvidia/hpc_sdk __LMOD_REF_COUNT_PE_PKGCONFIG_LIBS=darshan-runtime:1;libsci_mpi:1;libsci:1;mpich:1;dsmml:1 CRAY_MPICH_VERSION=8.1.11 _ModuleTable003_=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 PE_MPICH_PKGCONFIG_VARIABLES=PE_MPICH_GTL_DIR_@accelerator@:PE_MPICH_GTL_LIBS_@accelerator@ LIBSCI_BASE_DIR=/opt/cray/pe/libsci/21.08.1.2 CRAY_LMOD_CPU=x86-rome/1.0 LMOD_FAMILY_PRGENV_VERSION=8.2.0 _CE_CONDA= PE_LIBSCI_OMP_REQUIRES_openmp=_mp PE_MPICH_FORTRAN_PKGCONFIG_LIBS=mpichf90 SSH_AUTH_SOCK=/tmp/ssh-iv0UbSuVPw/agent.96210 MPICH_DIR=/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7 CRAYPAT_OPTS_EXECUTABLE=libexec64/opts __LMOD_REF_COUNT_PE_NVIDIA_FIXED_PKGCONFIG_PATH=/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib/pkgconfig:1 PE_MPICH_GENCOMPILERS_NVIDIA=20.7 LESSKEY=/etc/lesskey.bin PE_LIBSCI_GENCOMPS_AOCC_x86_64=20 PE_MPICH_GTL_LIBS_nvidia70=-lmpi_gtl_cuda __LMOD_REF_COUNT_PE_DSMML_PKGCONFIG_LIBS=dsmml:1 PE_LIBSCI_OMP_REQUIRES= CRAY_DSMML_VERSION=0.2.2 PE_MPICH_FIXED_PRGENV=NVIDIA __LMOD_REF_COUNT_PE_MPICH_GENCOMPILERS_NVIDIA=20.7:1 OLDPWD=/global/homes/m/madams PKGCONFIG_ENABLED=1 CFS=/global/cfs/cdirs PE_LIBSCI_GENCOMPS_GNU_x86_64=91 PWD=/global/homes/m/madams/petsc OFFLOAD_INIT=on_start _ModuleTable004_=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 CRAY_LMOD_MPI=cray-mpich/8.0 CRAY_LD_LIBRARY_PATH=/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib:/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib:/opt/cray/pe/mpich/8.1.11/gtl/lib:/opt/cray/pe/dsmml/0.2.2/dsmml/lib:/opt/cray/pe/perftools/21.10.0/lib64 CONDA_EXE=/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/conda Files in path provided by default path /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin: mamba conda /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin: qmlmin iptest3 dask-mpi sdbadmin gss-client matplotlib ristosds fc-scan jupyter-kernel navigator-updater curl-config bzgrep xsltproc jupyter-serverextension giftext lz4 runxlrd.py pydoc mpirun elbadmin hydra_nameserver mergesolv fitsheader h5import f2py mpiexec.hydra gif2hdf ahost fc-validate glib-gettextize pycc pal2rgb sqlite3_analyzer gif2webp sphinx-apidoc uic tificc rst2html5.py lzma xzcmp route53 tput jupyter-server zstdgrep gst-discoverer-1.0 ncinfo gsettings sip dwebp pip hdftopal pydoc3 h5mkgrp gio xmlwf bsdtar ncgen tiffcmp icuinfo gencnval cph opj_compress ipython xzgrep conda2solv pngfix qmlimportscanner rst2s5.py h5redeploy instance_events idle3.9 qdoc qtplugininfo dumpsolv hdfed jupyter-nbconvert ziptool makeconv libdeflate-gzip tiffmedian h5debug unidecode zfp qhelpgenerator conda-inspect gobject-query conda-build volint toe xml2-config c_rehash protoc mpivars webpmux pep8 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rst2odt_prepstyles.py tabulate conda-pack slugify r8tohdf yapf cwutil conda-convert gif2h5 xmllint mpif77 taskadmin bsdcpio fribidi bzcat conda-content-trust rcc curl cwebp h5unjam h4redeploy isort yapf-diff tqdm tiff2ps bundle_image dbus-launch gtester anaconda dask-ssh hdf24to8 fc-pattern qgltf pg_config k5srvutil hydra_persist hdfcomp 2to3-3.9 sphinx-autogen anaconda-navigator list_instances python3-config pkgdata dbus-test-tool hrepack fax2ps epylint vshow freetype-config jupyter-migrate python3.9-config rst2man.py cq infotocap tclsh8.6 black pixeltool mpichversion reset x86_64-conda-linux-gnu-ld compile_et normalizer xzegrep img2webp jupyter-console libpng16-config qmlplugindump xmlpatternsvalidator qwebengine_convert_dict hdftor8 tset odbcinst gendict gapplication jupyter-kernelspec pasteurize mpif90 isql qdbusxml2cpp .scikit-learn-post-link.sh rst2odt.py pydoc3.9 jupyter-qtconsole pango-list kdestroy dbus-run-session funpack xml2-config.bak gresource bzip2 fonttools zstd zstdmt h5clear h5diff deactivate gdbus python3.9 jpgicc qdbuscpp2xml gst-device-monitor-1.0 openssl rg jlpm nghttp xslt-config bzcmp unlz4 zipmerge fc-cache bunzip2 qdarkstyle aec xmlpatterns sphinx-build pango-view rstpep2html.py gencfu vmake conda-skeleton genrb futurize lsm2bin hdf8to24 fc-conflist lzgrep wish8.6 qta-browser conda-token qtpaths sclient rdjpgcom hdfls spyder imagecodecs tiffinfo libtool cygdb sim_client qlalr jupyter-troubleshoot h4cc iusql pt2to3 wheel jupyter-nbextension tabs hdf2jpeg linkicc glib-compile-schemas fc-query mpiexec ncdump conda-metapackage h52gif rst2html.py f2py3 nosetests skivi acountry png-fix-itxt fitscopy libtoolize anaconda-project jupyter-nbclassic chardetect nccopy glib-compile-resources tiffdump bzmore qml gtester-report dynamodb_dump x86_64-conda_cos6-linux-gnu-ld lzless h5watch xmlcatalog gif2rgb pyftsubset idle3 dbus-daemon jupyter-labhub odbc_config nc3tonc4 tiffcp jupyter hdfimport brotli qt.conf showtable py.test gst-stats-1.0 psicc iptest zstdcat mirror_server_stop ktutil kinit dbus-cleanup-sockets nghttpx conda-server canbusutil qmlcachegen lzfgrep dbrunsli pttree python3 lzmore numba qtattributionsscanner conda-develop pyuic5 glacier lrelease lzmadec qscxmlc h5fc opj_dump xzless jsonschema lz4cat isort-identify-imports blackd hdf2gif wrjpgcom hdp tiffsplit pyrcc5 kswitch h5jam ipython3 conda-verify qmake nc4tonc3 kill_instance moc vba_extract.py ptdump gifclrmp hb-shape qtdiag gst-play-1.0 krb5-config send2trash h2load ppm2tiff cython tiff2fsspec jupyter-notebook uuclient keyring installcheck pcre-config h5repart tifffile hb-subset testsolv mpic++ fax2tiff xzdiff rst2xetex.py h4_ncdump repo2solv fitscheck pycodestyle qdarkstyle.example clear giffix gst-launch-1.0 repc transicc cjpeg h5dump kpasswd fpack xzcat rst2xml.py nghttpd giftool lconvert autopep8 activate h5perf_serial sqlite3 h5format_convert ksu captoinfo hydra_pmi_proxy webpinfo lupdate hdfpack cbrunsli lzdiff dbus-update-activation-environment parkill conda-debug conda-render syncqt.pl nosetests-3.9 pybabel symilar bzegrep pyreverse paltohdf fc-list xzfgrep tiffdither derb dltest cythonize imcopy tiffcrop qhelpconverter zipcmp pkginfo raw2tiff pyami_sendmail fits2bitmap qmltestrunner f2py3.9 jupyter-trust pylint kadmin xzdec isympy qmlscene h4_ncgen rst2latex.py imageio_download_bin binstar jupyter-lab conda-index conda wcslint libpng-config tclsh pylupdate5 linguist unxz pyftmerge pcregrep slencheck ncursesw6-config qmleasing fitsdiff JxrEncApp gio-querymodules 2to3 hdiff qdarkstyle.utils jupyter-run ncgen3 hdfunpac smem zopflipng tiff2bw hb-ot-shape-closure dask-worker pip3 fc-match Warning accessing /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin gives errors: [Errno 2] No such file or directory: '/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin' /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin: ctest cpack cmake ccmake /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin: darshan-gen-fortran.pl darshan-summary-per-file.sh darshan-gen-cc.pl darshan-config darshan-mk-log-dirs.pl darshan-parser darshan-job-summary.pl darshan-gen-cxx.pl darshan-merge darshan-analyzer dxt_analyzer.py darshan-convert darshan-diff darshan-dxt-parser /global/common/software/nersc/bin: usgrsu myquota take myquota_old fix_perms showquota sqs cmnquota give hpss_get_sorted_files.py cfsquota generate_sorted_list_for_hpss.py /opt/cray/pe/craype/2.7.12/bin: 2.25.0.craype.ld CC cc driver ftn /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin: .cuda-gdbrc .cuda-memcheckrc .ncurc .nsightrc .nsysrc .nvc++rc .nvccrc .nvcrc .nvfortranrc .nvprofrc cuda-gdb cuda-memcheck localrc localrc-lock makelocalrc ncu nsight-sys nsys nv-nsight-cu-cli nvaccelerror nvaccelinfo nvc nvc++ nvcc nvcpuid nvcudainit nvdecode nvextract nvfortran nvprepro nvprof nvsize nvunzip nvzip pgaccelerror pgaccelinfo pgc++ pgcc pgcpuid pgcudainit pgf77 pgf90 pgf95 pgfortran pgprepro pgsize pgunzip pgzip rcfiles tools /opt/cray/pe/perftools/21.10.0/bin: app2 grid_order jman pat_build pat_help pat_info pat_opts pat_report pat_run pat_view reveal /opt/cray/pe/papi/6.0.0.10/bin: papi_avail papi_clockres papi_command_line papi_component_avail papi_cost papi_decode papi_error_codes papi_event_chooser papi_mem_info papi_multiplex_cost papi_native_avail papi_version papi_xml_event_info /opt/cray/libfabric/1.11.0.4.75/bin: fi_info fi_pingpong fi_strerror /usr/local/bin: /usr/bin: .fipscheck.hmac .hsi-4.0.1.3.exe .hsi-5.0.2.p12.exe .htar-4.0.1.3.exe .htar-5.0.2.p12.exe .pftp-client-7.3.exe .pftp-client-7.4.exe DcgmProfTesterKernels.ptx Mail WebKitWebDriver X Xorg Xvfb [ aclocal aclocal-1.15 acpi_listen acpi_validate acpibin acpiexamples acpiexec acpihelp acpinames acpisrc acpixtract addr2line ansible ansible-config ansible-connection ansible-console ansible-doc ansible-galaxy ansible-inventory ansible-playbook ansible-pull ansible-vault appdata2solv appletviewer apropos ar arch arpaname as asn1Coding asn1Decoding asn1Parser aspell aspell-import at atq atrm attr authvar autoconf autoheader autom4te automake automake-1.15 autopoint autoreconf autoscan autoupdate awk b2sum babeltrace babeltrace-log base32 base64 basename bashbug batch bc bison bootctl broadwayd build-classpath build-classpath-directory build-jar-repository bunzip2 busctl bwrap bzcat bzcmp bzdiff bzegrep bzfgrep bzgrep bzip2 bzip2recover bzless bzmore bznew c++ c++filt c_rehash cal callgrind_annotate callgrind_control capinfos captoinfo captype cat catatonit catchsegv catman cc ccmake certutil cfs-state-reporter-spire-agent cg_annotate cg_diff cg_merge chacl chage chardetect chardetect-2.7 chardetect-3.6 chattr chcon check-binary-files checkmedia checksctp chfn chgrp chkconfig chkstat chmem chmod choom chown chronic chronyc chroot chrp-addnote chrt chsh chvt cksum clean-binary-files clear clrunimap cmake cmp cmsutil cmtime col colcrt colrm column combine comm comps2solv conmon copybw copylat corelist cowsay cowthink cp cpack cpan cpio cpp cpp-7 cpupcstat cpupower cray cray-ifmap cray-ifmove cray-ifname create-jar-links crlutil csh csplit ctags ctest cups-config curl curl-config curve_keygen cut cvmfs2 cvmfs_config cvmfs_fsck cvmfs_receiver cvmfs_talk cvt cyrus_sasl_sample_client cyrus_sasl_sample_server dapltest date dbilogstrip dbiprof dbiproxy dbus-cleanup-sockets dbus-daemon dbus-launch dbus-launch.nox11 dbus-monitor dbus-run-session dbus-send dbus-test-tool dbus-update-activation-environment dbus-uuidgen dc dcgmi dcgmproftester10 dcgmproftester11 dd deallocvt deltainfoxml2solv delv desktop-file-edit desktop-file-install desktop-file-validate df diff diff-jars diff3 dig dimax_init dir dircolors dirmngr dirmngr-client dirmngr_ldap dirname dltest dmesg dnsdomainname docker-init domainname dracut dshbak dtest dtestcm dtestsrq dtestx du dump2psl.pl dump2slvl.pl dumpcap dumpkeys dumpsolv dvs-hmi-spire-agent dvs-map-spire-agent dwp dwz easy_install easy_install-2.7 easy_install-3.6 ebrowse echo edit editcap efikeygen efisiglist egrep eject elfedit emacs emacs-gtk emacs-x11 emacsclient embedspu enc2xs encguess env envsubst eqn erb erb.ruby2.5 errno etags eu-addr2line eu-ar eu-elfcmp eu-elfcompress eu-elflint eu-findtextrel eu-make-debug-archive eu-nm eu-objdump eu-ranlib eu-readelf eu-size eu-stack eu-strings eu-strip eu-unstrip ex expand expiry expr extcheck extlinux f2py f2py3 f2py3.6 factor fallocate false fasthash fc-cache fc-cat fc-list fc-match fc-pattern fc-query fc-scan fc-validate fdupes fgconsole fgrep file filesize fillup fincore find find-jar findmnt fips_standalone_hmac fipscheck fipshmac firewall-cmd firewall-offline-cmd firewallctl flex flex++ flint flint_ext flock fluent-binlog-reader fluent-binlog-reader-1.5.2 fluent-binlog-reader.ruby2.5 fluent-binlog-reader.ruby2.5-1.5.2 fluent-ca-generate fluent-ca-generate-1.5.2 fluent-ca-generate.ruby2.5 fluent-ca-generate.ruby2.5-1.5.2 fluent-cat fluent-cat-1.5.2 fluent-cat.ruby2.5 fluent-cat.ruby2.5-1.5.2 fluent-debug fluent-debug-1.5.2 fluent-debug.ruby2.5 fluent-debug.ruby2.5-1.5.2 fluent-gem fluent-gem-1.5.2 fluent-gem.ruby2.5 fluent-gem.ruby2.5-1.5.2 fluent-plugin-config-format fluent-plugin-config-format-1.5.2 fluent-plugin-config-format.ruby2.5 fluent-plugin-config-format.ruby2.5-1.5.2 fluent-plugin-generate fluent-plugin-generate-1.5.2 fluent-plugin-generate.ruby2.5 fluent-plugin-generate.ruby2.5-1.5.2 fluentd fluentd-1.5.2 fluentd.ruby2.5 fluentd.ruby2.5-1.5.2 fmt fold free freetype-config fsfs-access-map funzip funzip-plain fuse-overlayfs fuser fusermount fwtrace g++ g++-7 g13 g2r gapplication gawk gcc gcc-7 gcc-ar gcc-ar-7 gcc-nm gcc-nm-7 gcc-ranlib gcc-ranlib-7 gconf-merge-tree gconftool-2 gconftool-rebuild gcore gcov gcov-7 gcov-dump gcov-dump-7 gcov-tool gcov-tool-7 gdb gdb-add-index gdbus gdbus-codegen gdk-pixbuf-csource gdk-pixbuf-pixdata gdk-pixbuf-query-loaders-64 gedit gem gem.ruby2.5 gem2rpm gem2rpm-0.10.1 gem2rpm.ruby2.5 gem2rpm.ruby2.5-0.10.1 genDDNSkey gencat gendiff genhash geqn get_kernel_version getconf getent getfacl getfattr gethostip getkeycodes getopt gettext gettext.sh gettextize getunimap gfortran gfortran-7 gio gio-launch-desktop gio-querymodules-64 git git-lfs git-new-workdir git-receive-pack git-shell git-upload-archive git-upload-pack glib-compile-resources glib-compile-schemas glib-genmarshal glib-gettextize glib-mkenums gmake gnuctags go gobject-query gofmt goss gpasswd gpg gpg-agent gpg-connect-agent gpg-wks-server gpg-zip gpg2 gpgconf gpgparsemail gpgscm gpgsm gpgtar gpgv gpgv2 gprof grep gresource groff grog grops grotty groups grub2-editenv grub2-emu grub2-file grub2-fstest grub2-glue-efi grub2-kbdcomp grub2-menulst2cfg grub2-mkfont grub2-mkimage grub2-mklayout grub2-mknetdir grub2-mkpasswd-pbkdf2 grub2-mkrelpath grub2-mkrescue grub2-mkstandalone grub2-mount grub2-render-label grub2-script-check grub2-syslinux2cfg gsettings gsettings-data-convert gst-device-monitor-1.0 gst-discoverer-1.0 gst-play-1.0 gstack gtbl gtester gtester-report gtf gtk-builder-convert gtk-builder-tool gtk-demo gtk-encode-symbolic-svg gtk-launch gtk-query-immodules-2.0-64 gtk-query-immodules-3.0-64 gtk-query-settings gtk-update-icon-cache gtk-update-icon-cache-2.0 gtk-update-icon-cache-3.0 gtk3-icon-browser guess_encoding gunzip gvimtutor gzexe gzip h2ph h2xs hardlink hca_self_test.ofed head heartbeat-spire-agent hexdump host hostid hostname hostnamectl hsi htar hugeadm hugectl hugeedit hwloc-annotate hwloc-bind hwloc-calc hwloc-compress-dir hwloc-diff hwloc-distrib hwloc-gather-cpuid hwloc-gather-topology hwloc-info hwloc-ls hwloc-patch hwloc-ps i2c i386 iasl ib_acme ib_atomic_bw ib_atomic_lat ib_read_bw ib_read_lat ib_send_bw ib_send_lat ib_write_bw ib_write_lat ibcongest ibdiagm.sh ibdiagnet ibdiagnet_csv2xml.py ibdiagpath ibdmchk ibdmtr ibgenperm ibnetsplit ibnlparse ibtopodiff ibv_asyncwatch ibv_devices ibv_devinfo ibv_rc_pingpong ibv_srq_pingpong ibv_uc_pingpong ibv_ud_pingpong ibv_xsrq_pingpong iconv icu-config id idl2wrs ifdata ifnames ifne info infocmp infotocap inotifywait inotifywatch install install-info installation_sources installcheck instmodsh intel-speed-select iokit-config iokit-gather-stats iokit-libecho iokit-lstats iokit-parse-ior iokit-plot-obdfilter iokit-plot-ost iokit-plot-sgpdd ionice ior-survey ipcalc ipcmk ipcrm ipcs iperf3 iptables-xml irb irb.ruby2.5 isohybrid isohybrid.pl isolinux-config isosize isql isutf8 itox itrace iusql jar jarsigner java javac javadoc javah javap jcmd jconsole jdb jhat jinfo jmap join journalctl jp jp-3.6 jps jq jrunscript jsadebugd json_pp jsonschema jsonschema-3.6 jstack jstat jstatd kbd kbd_mode kbdinfo kbdrate kbxutil kernel-install keyctl keyring keytab-lilo keytool kill killall kinit klist kmod kmp-install ksh last lastb lastlog lckdo ld ld.bfd ldapadd ldapcompare ldapdelete ldapexop ldapmodify ldapmodrdn ldappasswd ldapsearch ldapurl ldapwhoami ldd less lessclose.sh lessecho lesskey lessopen.sh lex lexgrog lfs lfs_migrate libnetcfg libpng-config libpng16-config libtool libtoolize line link linux32 linux64 lksh llobdstat llstat ln lnstat loadkeys loadunimap locale localectl localedef logger loginctl logname lognormalizer look ls lsattr lsb-release lsb_release lsblk lscpu lsinitrd lsipc lslocks lslogins lsmem lsmod lsns lsof lss16toppm lstopo lstopo-no-graphics lua lua5.3 luac luac5.3 luacheck luacov lwp-download lwp-dump lwp-mirror lwp-request lzcat lzcmp lzdiff lzegrep lzfgrep lzgrep lzless lzma lzmadec lzmainfo lzmore m17n-db m4 mail mailx make makedumpfile makedumpfile-R.pl man mandb manpath mapscrn mariadb mariadb-admin mariadb-check mariadb-dump mariadb-import mariadb-show mariadb_config mariadbd-safe-helper mckey mcookie mcra mcreate md5pass md5sum mdevices_info mdig mds-survey memdiskfind memhog merge-pciids mergecap mergesolv mesg mft_uninstall.sh mget_temp mget_temp_ext migratepages migspeed minit mispipe mkdir mkdiskimage mkfifo mkhpsstok.pl mkinfodir mknod mksh mktemp mkzimage_cmdline mlnx_dump_parser mlnx_perf mlnx_qos mlx_fpga mlx_fpga_ext mlx_fs_dump mlxburn mlxcables mlxcables_ext mlxconfig mlxdump mlxdump_ext mlxfwmanager mlxfwreset mlxfwstress mlxfwstress_ext mlxgearbox mlxi2c mlxlink mlxlink_ext mlxmcg mlxmdio mlxpci mlxphyburn mlxprivhost mlxreg mlxreg_ext mlxtrace mlxtrace_ext mlxuptime mlxvpd mmdbresolve mmroff modsign-repackage modsign-verify modutil more mount mountpoint mpi-selector mpi-selector-menu mremote ms_print msgattrib msgcat msgcmp msgcomm msgconv msgen msgexec msgfilter msgfmt msggrep msginit msgmerge msgunfmt msguniq mst mst_cable mst_ib_add mstconfig mstcongestion mstdump mstflint mstfwreset mstfwtrace mstmcra mstmread mstmtserver mstmwrite mstop mstprivhost mstregdump mstresourcedump mstvpd mtserver munge munlink mv mysql mysql_config mysqladmin mysqlcheck mysqld_safe_helper mysqldump mysqlimport mysqlshow namei native2ascii ncurses6-config ncursesw6-config neqn newgidmap newgrp newuidmap ngettext nice nisdomainname nl nm node_exporter nohup nproc nroff nsenter nslookup nss-policy-check nstat nsupdate numactl numademo numastat numfmt nv-fabricmanager nv-hostengine nvidia-bug-report.sh nvidia-cuda-mps-control nvidia-cuda-mps-server nvidia-debugdump nvidia-modprobe nvidia-persistenced nvidia-settings nvidia-smi nvidia-xconfig nvswitch-audit obdfilter-survey objcopy objdump od odbc_config odbcinst ofed_info ofed_rpm_info old omshell openssl openvt oprofile_map_events.pl oprofile_start.sh orbd orca-spire-agent ost-survey outpsfheader p11-kit pack200 pagesize passwd paste patch pathchk pckt_drop pcre-config pdcp pdksh pdsh pee peekfd perf perl perl5.26.1 perlbug perldoc perlivp perlthanks pesigcheck pesign pesign-client pftp pgrep pic piconv pigz pinentry pinentry-curses pinentry-tty ping ping6 pinky pirb pirb-1.0.3 pirb.ruby2.5 pirb.ruby2.5-1.0.3 pk12util pkg-config pkill pl2pm plot-llstat pmap pod2html pod2man pod2text pod2usage podchecker podman podman-remote podselect policytool ppmtolss16 pr precat preconv preunzip prezip prezip-bin printenv printf prlimit prove prtstat pruby pruby-1.0.3 pruby.ruby2.5 pruby.ruby2.5-1.0.3 ps psfaddtable psfgettable psfstriptable psfxtable pslog pstree pstree.x11 ptar ptardiff ptargrep ptx purge pwd pwdx pxelinux-options pybabel pybabel-2.7 pybabel-3.6 pydoc pydoc3 pydoc3.6 pygmentize pygmentize-3.6 pyjwt pyjwt-3.6 pyrsa-decrypt pyrsa-decrypt-3.6 pyrsa-decrypt-bigfile pyrsa-decrypt-bigfile-3.6 pyrsa-encrypt pyrsa-encrypt-3.6 pyrsa-encrypt-bigfile pyrsa-encrypt-bigfile-3.6 pyrsa-keygen pyrsa-keygen-3.6 pyrsa-priv2pub pyrsa-priv2pub-3.6 pyrsa-sign pyrsa-sign-3.6 pyrsa-verify pyrsa-verify-3.6 python python2 python2.7 python3 python3-config python3.6 python3.6-config python3.6m python3.6m-config pyvenv pyvenv-3.6 qperf rake rake.ruby.ruby2.5 rake.ruby2.5 randpkt ranlib raw_ethernet_burst_lat raw_ethernet_bw raw_ethernet_fs_rate raw_ethernet_lat rawshark rbash rcopy rdma_client rdma_server rdma_xclient rdma_xserver rdoc rdoc.ruby.ruby2.5 rdoc.ruby2.5 readelf readlink realpath rebuild-jar-repository recode-sr-latin redis-benchmark redis-check-aof redis-check-rdb redis-cli remunge rename renice reordercap repo2solv repo2solv.sh repomdxml2solv reset resizecons resourcedump resourceparse rev ri ri.ruby.ruby2.5 ri.ruby2.5 riostream rm rmdir rmic rmid rmiregistry routef routel rpcgen rpdcp rping rpm rpm2cpio rpmbuild rpmdb rpmdb2solv rpmgraph rpmkeys rpmlocate rpmmd2solv rpmqpack rpmquery rpms2solv rpmsign rpmspec rpmverify rst2html rst2html4 rst2html4-docutils rst2html5 rst2html5-docutils rst2latex rst2man rst2odt rst2odt_prepstyles rst2pseudoxml rst2s5 rst2xetex rst2xml rstpep2html rstream rsync rsyncstats ruby ruby-find-versioned ruby.ruby2.5 run-with-aspell run_perftest_loopback run_perftest_multi_devices runc runcon rview rvim s3 sacct sacctmgr safe-rm safe-rmdir salloc sanity sattach sbatch sbcast scancel scdaemon schemagen scontrol scp screen screendump script scriptreplay scrontab sctp_darn sctp_status sctp_test sdiag sdiff secure-forward-ca-generate secure-forward-ca-generate-0.4.5 secure-forward-ca-generate.ruby2.5 secure-forward-ca-generate.ruby2.5-0.4.5 sed seff seq serialver servertool setarch setfacl setfattr setfont setkeycodes setleds setlogcons setmetamode setpalette setpriv setsid setterm setvesablank setvtrgb sftp sg sgather sgpdd-survey sh sha1pass sha1sum sha224sum sha256sum sha384sum sha512sum shade-jar sharkd shasum shifter shifterimg showconsolefont showkey shred shuf signtool signver sinfo sipcalc size sjobexitmod sjstat skill slabtop sleep slencheck slingshot-diag slingshot-firmware slingshot-ifname slingshot-ifroute slingshot-snapshot slirp4netns slptool smail smicache smidiff smidump smilint smiquery smistrip smixlate smtpd.py snice soelim sort spawn_console spawn_login sphinx-apidoc sphinx-apidoc-3.6 sphinx-autogen sphinx-autogen-3.6 sphinx-build sphinx-build-3.6 sphinx-quickstart sphinx-quickstart-3.6 spire-agent splain split sponge sprio sprof sqlite3_analyzer squeue squidclient sreport srun ss ssh ssh-add ssh-agent ssh-copy-id ssh-keygen ssh-keyscan sshare ssltap sss_ssh_authorizedkeys sss_ssh_knownhostsproxy sstat stat stdbuf stdlogctl strace strace-graph strace-log-merge strigger strings strip stty su sudo sudoedit sudoreplay sum suse-update-mime-defaults susetags2solv sview svn svn-bench svn-populate-node-origins-index svn_apply_autoprops.py svnadmin svnauthz svnauthz-validate svnbench svndiff svndumpfilter svnfsfs svngrep svnlook svnmucc svnraisetreeconflict svnrdump svnserve svnsync svnversion sync syscfg syslinux syslinux-mtools syslinux2ansi systemctl systemd-analyze systemd-ask-password systemd-cat systemd-cgls systemd-cgtop systemd-delta systemd-detect-virt systemd-escape systemd-firstboot systemd-hwdb systemd-inhibit systemd-machine-id-setup systemd-mount systemd-notify systemd-path systemd-run systemd-socket-activate systemd-stdio-bridge systemd-sysusers systemd-tmpfiles systemd-tty-ask-password-agent systemd-umount tabs tac tack tagmedia tail tar taskset tbl tc_wrap.py tclsh tclsh8.6 tcsh tee telnet test testsolv tethereal text2pcap tic time timedatectl timeout tload tmux tnameserv toe top touch tput tr trace tracepath tracepath6 tree trietool trietool-0.2 troff true truncate trust ts tset tshark tsort tty turbostat tzselect uai-ssh.sh ucmatose ucx_info ucx_perftest ucx_read_profile udaddy udevadm udpong ul ulockmgr_server umount uname uname26 uncompress unexpand unicode_start unicode_stop unidecode unidecode-3.6 uniq unlink unlzma unmunge unpack200 unpigz unshare unxz unzip unzip-plain unzipsfx unzipsfx-plain update-desktop-database update-mime-database updateinfoxml2solv uptime users utmpdump uuidgen uuidparse valgrind valgrind-di-server valgrind-listener vdir vdpauinfo vgdb vi vidir view vim vim-nox11 vimdiff vimtutor vipe vitmp vlock vmstat w wall watch watchgnupg wc wdctl wget whatis whereis which who whoami withsctp wmidump wmixtract word-list-compress wqdump wqdump_ext write wsdump.py wsdump.py-3.6 wsgen wsimport x86_64 x86_64-suse-linux-gnu-pkg-config x86_energy_perf_policy xargs xauth xconv.pl xdg-dbus-proxy xf86debug xgettext xjc xkbcomp xml2-config xmlcatalog xmllint xorg-backtrace xsltproc xsubpp xxd xz xzcat xzcmp xzdec xzdiff xzegrep xzfgrep xzgrep xzless xzmore xznew yacc yes ypcat ypchfn ypchsh ypdomainname ypmatch yppasswd ypwhich yzpper zcat zcmp zdiff zegrep zfgrep zforce zgrep zip zipcloak zipdetails zipgrep zipgrep-plain zipinfo zipnote zipsplit zless zmore znew zrun zsh zypp-CheckAccessDeleted zypp-NameReqPrv zypper update_sshproxy_revocation_list.sh /bin: arch awk basename bash cat chgrp chmod chown chvt clrunimap cp cpio csh date dbus-cleanup-sockets dbus-daemon dbus-monitor dbus-send dbus-test-tool dbus-update-activation-environment dbus-uuidgen dd deallocvt df dmesg dnsdomainname domainname dumpkeys echo egrep ex false fgconsole fgrep fillup find findmnt fsync fuser gawk getkeycodes getunimap grep guess_encoding gunzip gzip hostname ip kbd_mode kbdinfo kbdrate keyctl kill ksh lksh ln loadkeys loadunimap logger login ls lsblk lsmod mail mapscrn md5sum mkdir mknod mksh mktemp mlnx_conf_mgr.sh mlnx_interface_mgr.sh more mount mv nisdomainname openvt outpsfheader pdksh pgrep pidof ping ping6 pkill ps psfaddtable psfgettable psfstriptable psfxtable pwd readlink resizecons rm rmdir rpm screendump sed setfont setkeycodes setleds setlogcons setmetamode setpalette setvesablank setvtrgb sh showconsolefont showkey sleep sort spawn_console spawn_login stat stty su sync systemctl systemd systemd-ask-password tar tcsh touch tracepath tracepath6 true umount uname unicode_start unicode_stop usleep vi vim ypdomainname zcat zsh /usr/lib/mit/bin: gss-client k5srvutil kadmin kdestroy kinit klist kpasswd ksu kswitch ktutil kvno sclient sim_client uuclient /opt/cray/pe/bin: set_default set_default_master set-gcc-libs ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(/global/u2/m/madams/petsc/config/BuildSystem/config/framework.py:1029) serialEvaluation: initial cxxDialectRanges ('c++03', 'c++17') serialEvaluation: new cxxDialectRanges ('c++03', 'c++17') child config.utilities.macosFirewall 0.000006 ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(/global/u2/m/madams/petsc/config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Linux Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/gdb...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/gdb...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/gdb...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/gdb...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/gdb...not found Checking for program /global/common/software/nersc/bin/gdb...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/gdb...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/gdb...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/gdb...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/gdb...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Executing: uname -s stdout: Linux child config.utilities.debuggers 0.030759 ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(/global/u2/m/madams/petsc/config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 16 #define PETSC_VERSION_SUBMINOR 1 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.005440 ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(/global/u2/m/madams/petsc/config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.001202 ============================================================================================= TESTING: configureGit from config.sourceControl(/global/u2/m/madams/petsc/config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/git...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/git...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/git...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/git...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/git...not found Checking for program /global/common/software/nersc/bin/git...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/git...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/git...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/git...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/git...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.26.2 ============================================================================================= TESTING: configureMercurial from config.sourceControl(/global/u2/m/madams/petsc/config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/hg...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/hg...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/hg...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/hg...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/hg...not found Checking for program /global/common/software/nersc/bin/hg...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/hg...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/hg...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/hg...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/hg...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/lib/mit/bin/hg...not found Checking for program /opt/cray/pe/bin/hg...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/hg...not found child config.sourceControl 0.013593 ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(/global/u2/m/madams/petsc/config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.16.1-442-gebb4a459f5 Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: ebb4a459f5ab9bc7607024ea4e4bba96f3347cc7 Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2021-12-08 08:59:23 -0500 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: adams/fix_mat_ex5k Defined "VERSION_GIT" to ""v3.16.1-442-gebb4a459f5"" Defined "VERSION_DATE_GIT" to ""2021-12-08 08:59:23 -0500"" Defined "VERSION_BRANCH_GIT" to ""adams/fix_mat_ex5k"" child PETSc.options.petscclone 0.099759 ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(/global/u2/m/madams/petsc/config/PETSc/options/arch.py:31) ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(/global/u2/m/madams/petsc/config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set ============================================================================================= Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-perlmutter-opt-nvidia-cuda, ignoring environment: arch-perlmutter-opt-kokkos-nvidia-cuda ============================================================================================= configure hash file: arch-perlmutter-opt-nvidia-cuda/lib/petsc/conf/configure-hash does not match, need to run configure Setting hashfile: arch-perlmutter-opt-nvidia-cuda/lib/petsc/conf/configure-hash Deleting configure hash file: arch-perlmutter-opt-nvidia-cuda/lib/petsc/conf/configure-hash Deleted configure hash file: arch-perlmutter-opt-nvidia-cuda/lib/petsc/conf/configure-hash child PETSc.options.arch 0.037439 ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(/global/u2/m/madams/petsc/config/PETSc/options/installDir.py:32) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(/global/u2/m/madams/petsc/config/PETSc/options/installDir.py:76) ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(/global/u2/m/madams/petsc/config/PETSc/options/installDir.py:69) ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(/global/u2/m/madams/petsc/config/PETSc/options/installDir.py:53) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(/global/u2/m/madams/petsc/config/PETSc/options/installDir.py:89) child PETSc.options.installDir 0.007656 ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/global/u2/m/madams/petsc/config/PETSc/options/externalpackagesdir.py:15) ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/global/u2/m/madams/petsc/config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.001248 ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(/global/u2/m/madams/petsc/config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.001656 ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:2101) ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:2117) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:2071) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:2092) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:604) Initialize the compiler and linker flags Initialized CFLAGS to -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu Initialized CFLAGS to -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPFLAGS to Initialized HIPFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to -g -mp=gpu Initialized FFLAGS to -g -mp=gpu Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to Initialized SYCLPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:787) Locate a functional C compiler Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/cc...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/cc...not found Checking for program /global/common/software/nersc/bin/cc...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/cc...found Defined make macro "CC" to "cc" ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.o ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm pgacclnk: child process exit status 1: /usr/bin/ld: ======== Checking running linked program ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Testing executable /tmp/petsc-AzrmlS/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-AzrmlS/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-AzrmlS/config.setCompilers/conftest Executing: cc --version stdout: nvc 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:826) Locate a functional C preprocessor Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/cc...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/cc...not found Checking for program /global/common/software/nersc/bin/cc...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/cc...found Defined make macro "CPP" to "cc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkCUDACompiler from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:862) Locate a functional CUDA compiler Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc...found Defined make macro "CUDAC" to "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc" ===== Checking compiler Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-AzrmlS/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc --version stdout: nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2020 NVIDIA Corporation Built on Wed_Jul_22_19:09:09_PDT_2020 Cuda compilation tools, release 11.0, V11.0.221 Build cuda_11.0_bu.TC445_37.28845127_0 ============================================================================================= TESTING: checkCUDAPreprocessor from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:902) Locate a functional CUDA preprocessor Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc...found Defined make macro "CUDAPP" to "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include __global__ void testFunction() {return;}; Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -E -I/tmp/petsc-AzrmlS/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-AzrmlS/config.setCompilers/conftest.cu Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkHIPCompiler from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:936) Locate a functional HIP compiler Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/hipcc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/hipcc...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/hipcc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/hipcc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/hipcc...not found Checking for program /global/common/software/nersc/bin/hipcc...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/hipcc...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/hipcc...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/hipcc...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/hipcc...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /bin/hipcc...not found Checking for program /usr/lib/mit/bin/hipcc...not found Checking for program /opt/cray/pe/bin/hipcc...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/hipcc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/opt/rocm/bin/hipcc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/opt/rocm/bin/hipcc...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/opt/rocm/bin/hipcc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/opt/rocm/bin/hipcc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/opt/rocm/bin/hipcc...not found Checking for program /global/common/software/nersc/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /bin/opt/rocm/bin/hipcc...not found Checking for program /usr/lib/mit/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/cray/pe/bin/opt/rocm/bin/hipcc...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found ============================================================================================= TESTING: checkHIPPreprocessor from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:979) Locate a functional HIP preprocessor ============================================================================================= TESTING: checkSYCLCompiler from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1010) Locate a functional SYCL compiler ============================================================================================= TESTING: checkSYCLPreprocessor from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1036) Placeholder for now ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1127) Locate a functional Cxx compiler Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/CC...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/CC...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/CC...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/CC...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/CC...not found Checking for program /global/common/software/nersc/bin/CC...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/CC...found Defined make macro "CXX" to "CC" ===== Checking compiler Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.o ===== Checking linker Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm pgacclnk: child process exit status 1: /usr/bin/ld: ======== Checking running linked program ===== Checking linker Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Testing executable /tmp/petsc-AzrmlS/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-AzrmlS/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-AzrmlS/config.setCompilers/conftest Executing: CC --version stdout: nvc++ 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. ============================================================================================= TESTING: checkCxxPreprocessor from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1168) Locate a functional Cxx preprocessor Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/CC...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/CC...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/CC...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/CC...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/CC...not found Checking for program /global/common/software/nersc/bin/CC...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/CC...found Defined make macro "CXXPP" to "CC -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: CC -E -I/tmp/petsc-AzrmlS/config.setCompilers /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkFortranCompiler from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1271) Locate a functional Fortran compiler Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/ftn...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/ftn...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/ftn...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/ftn...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/ftn...not found Checking for program /global/common/software/nersc/bin/ftn...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/ftn...found Defined make macro "FC" to "ftn" ===== Checking compiler Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Successful compile: Source: program main end ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: ftn -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.o ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: ftn -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm pgacclnk: child process exit status 1: /usr/bin/ld: ======== Checking running linked program ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: ftn -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Testing executable /tmp/petsc-AzrmlS/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-AzrmlS/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-AzrmlS/config.setCompilers/conftest Executing: ftn --version stdout: nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. ============================================================================================= TESTING: checkFortranPreprocessor from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1308) Locate a functional Fortran preprocessor Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/ftn...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/ftn...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/ftn...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/ftn...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/ftn...not found Checking for program /global/common/software/nersc/bin/ftn...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/ftn...found Defined make macro "FPP" to "ftn -E" Preprocessing source: #define foo 10 Executing: ftn -E -I/tmp/petsc-AzrmlS/config.setCompilers /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkFortranComments from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1330) Make sure fortran comment "!" works ===== Checking compiler Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ============================================================================================= TESTING: checkLargeFileIO from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1507) ============================================================================================= TESTING: checkArchiver from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1606) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 15) 2.35.1.20201123-7.18 Copyright (C) 2020 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 15) 2.35.1.20201123-7.18 Copyright (C) 2020 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/ar...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/ar...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/ar...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/ar...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/ar...not found Checking for program /global/common/software/nersc/bin/ar...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/ar...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/ar...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/ar...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/ar...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/ranlib...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/ranlib...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/ranlib...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/ranlib...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/ranlib...not found Checking for program /global/common/software/nersc/bin/ranlib...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/ranlib...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/ranlib...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/ranlib...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/ranlib...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-AzrmlS/config.setCompilers/libconf1.a /tmp/petsc-AzrmlS/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-AzrmlS/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 15) 2.35.1.20201123-7.18 Copyright (C) 2020 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 15) 2.35.1.20201123-7.18 Copyright (C) 2020 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/ar...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/ar...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/ar...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/ar...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/ar...not found Checking for program /global/common/software/nersc/bin/ar...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/ar...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/ar...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/ar...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/ar...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/ranlib...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/ranlib...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/ranlib...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/ranlib...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/ranlib...not found Checking for program /global/common/software/nersc/bin/ranlib...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/ranlib...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/ranlib...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/ranlib...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/ranlib...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-AzrmlS/config.setCompilers/libconf1.a /tmp/petsc-AzrmlS/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-AzrmlS/config.setCompilers/libconf1.a ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -L/tmp/petsc-AzrmlS/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ============================================================================================= TESTING: checkArchiverRecipeArgfile from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1670) Checks if AR handles @ notation Executing: /usr/bin/ar cr checkRecipeArgfile.a @checkRecipeArgfile.args Defined make macro "AR_ARGFILE" to "yes" ============================================================================================= TESTING: checkSharedLinker from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1752) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker cc using flags ['-qmkshrobj'] Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/cc...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/cc...not found Checking for program /global/common/software/nersc/bin/cc...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/cc...found Defined make macro "LD_SHARED" to "cc" Executing: cc --help | head -n 20 stdout: Usage: cc [options] file... Options: -[no-]add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options and new dtags are disabled. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]add-rpath-shared Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in specific versions of libraries at runtime for generated shared libraries. (Off by default.) -[no-]add-runpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options and new dtags are enabled. Executing: cc -qversion Executing: cc -show stdout: Known Variables: _3DNOW =0 _3DNOWA =0 ABM =1 ACC901FLAGS ACCAUTOPAR =1 ACCBUILDLIB ACCCACHE ACCCGDEF =-y 163 0xc0000000 -x 201 0xf0000000 ACCCGFLAGS ACCDEBUG ACCDEF ACCDEFDEF ACCDEFINES ACCELFLAG ACCELFLAG1 ACCELS ACCEXTRACTLIB ACCEXTRACTLIBSET ACCEXTRACTLIBSW ACCEXTRACTTOC ACCFEFLAGS ACCFLAGS ACCGPULINK Set if compiling OpenACC for GPU =0 ACCLIB ACCLIB2 ACCLIBSUFF ACCLINK ACCLLVM ACCLNK =acclnk ACCMINDEBUG ACCMULTI ACCMULTIONLY ACCPREFIX ACCPRESTDINC ACCRELOC =0 ACCREQUIRED ACCRPATH ACCTESLAONLY ACCWAIT =1 ACOPT ACTTPVAL =-tp zen2 ADDARGS ADDCUDA =0 ADDEHFRAME =1 AES =1 ALIASMODE =-x 2 0x400 ALLOCATABLE95 Use Fortran 95 allocatable semantics ANYCU =0 ANYCUF =0 AOPT APPENDMOD =1 APPENDTOOL Name of object file append module =append AS Name of assembler program =as ASARGS Arguments to assembler ASDIR Directory containing assembler program =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin ASMCOMMAND Internal command to process assembler file =asm ASMKEY =1 ASMONLY Compile and assemble, do not link ASMSUFFIX Suffix of assembler file =s ASMSUFFIXES Suffix allowed for assembler file =s ASNEEDED =--as-needed ASTYPE What type of object file to produce =ELF [COFF ELF AOUT] ATHLON =1 ATOMICLIB =--as-needed -lnvhpcatm -latomic --no-as-needed AUTOCOMPARE =0 AUTOINLINE AUTOLEVELS =10 AUTOMAXFUNCSIZE =400 AUTOMAXTOTALSIZE =128000 AVX =1 AVX2 =1 AVX512BITALG =0 AVX512BW =0 AVX512CD =0 AVX512DQ =0 AVX512ER =0 AVX512F AVX512IFMA =0 AVX512PF =0 AVX512VBMI =0 AVX512VBMI2 =0 AVX512VL AVX512VPOPCNTDQ =0 AVXEXTENSION BADCUDALIB =0 BASIC_SSE_DEFS =__MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ BLANKCUDALIB =0 BLTINLIBS BMI =1 BMI2 =1 BMODE =-x 123 4 BOUNDSCHECK =0 C99 =-x 123 0x80000000 C_INCLUDE_PATH_ENV C_ONLY =-x 123 0x80000000 CARGS Switches to C compiler =-x 123 0x80000000 -x 123 4 -x 2 0x400 -x 119 0x20 -def __pgnu_vsn=70500 -x 70 0x40000000 -x 183 4 -x 121 0x800 -x 6 0x20000 -x 122 0x400000 -y 125 0x100000 CCNEXTCOUNT =0 CCOMPCOMMANDS =cpp1 CCOMPDIR Directory containing the C compiler =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools CEXTARGS Arguments for extracting =-x 14 0x80 CG =llvm CGARGS Code Generation switches to native compiler =-x 120 0x200000 -x 70 0x40000000 -x 8 0x40000000 -x 164 0x800000 -x 85 0x2000 -x 85 0x4000 -x 34 0x40000000 -x 53 0x800000 -x 206 0x02 -x 68 0x1 -x 39 4 -x 56 0x10 -x 26 0x10 -x 26 1 -x 56 0x4000 -y 163 0xc0000000 -x 201 0xf0000000 -x 189 0x10 -y 189 0x4000000 CGMANPIN CHEADERSUFFIX =h CHECKCUDALIB =0 CLANG =clang CLANGARGS =-openmp-opt-disable CLANGCMD =clang CLANGCOMPBIN Clang directory =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/share/llvm/bin CLANGMCPU =-march=znver2 -mcpu=znver2 CLANGMODEL CLANGPIC CLANGUSERARGS CLFLUSHOPT =1 CLTPVAL =-tp zen2 CLZERO =1 COMMLIBSDIR COMMLIBSINCDIR COMMLIBSLDDIR COMMLIBSLPATHDIR COMMLIBSRPATHDIR COMPBASE =/opt/nvidia/hpc_sdk COMPBASE64 =/opt/nvidia/hpc_sdk COMPBBIN =compilers/bin COMPBIN Compiler binary directory =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin COMPBSHARE =compilers/share COMPGLIBDIR COMPGLIBLFDIR COMPILEONLY Compile, do not assemble COMPINCDIR Compiler include subdirectory =include COMPINCDIRFULL =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include COMPINCPREFIX =compilers/ COMPLIB Compiler library directory =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib COMPLIBDIR Compiler library subdirectory =lib COMPLIBLF COMPLIBLFDIR Compiler library subdirectory for large file support COMPLIBMP COMPLIBOBJ =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib COMPLIBPREFIX =compilers/ COMPLIBSO COMPLIBSTATIC COMPLIBSUBDIR =compilers/lib COMPREFIX COMPSYS =Linux_x86_64 COMPUTECAP =35 50 COMPUTECAPS =35 50 COMPVER =21.9 CONCUR Add multiprocessor thread libraries =YES CONCURCOMPILE Compiling with -Mconcur or -mp CONCURSW Add multiprocessor thread libraries =YES CONV =conv CPATH_ENV =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include CPLUS64LDARGS CPLUS_INCLUDE_PATH_ENV CPP =pgCC CPP1ARGS Switches passed to C++ phase 1 =--gnu_version=70500 -D__pgnu_vsn=70500 CPP1DEFARGS Switches passed to C++ phase 1 CPP1MANPIN CPP1ONLY C++ phase 1 only CPP2ARGS Switches passed to C++ phase 2 =-gnuvsn 70500 -x 69 0x200 -x 123 0x400 CPP2DEFARGS Switches passed to C++ phase 2 CPPASC CPPASCPP =C cpp cc cxx c++ CPPCOMP1 Name of the C++ compiler phase 1 module =cpp1 CPPCOMP2 Name of the C++ compiler phase 2 module =cpp2 CPPCOMPCOMMANDS C++ compile commands =nocpp CPPCOMPDIR Directory containing the C compiler =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools CPPDEPEND CPPDEPENDFILE CPPEXT Name of the C++ compiler extractor for inlining =cpp2ex CPPEXTCOMMANDS C++ extract commands =cpp1 CPPHEADERSUFFIX =H hpp hh hxx h++ CPPLDARGS CPPLIB CPPPREINC --preappend switches passed to C++ phase 1 =--preinclude _cplus_preinclude.h --preinclude_macros _cplus_macros.h CPPSTDLIBS CPPSUFFIX Suffixes to be compiled by C++ compiler =cpp CRTL =-lnsnvc -lnvc CSUFFIX Suffixes to be compiled by C compiler =c i CUASCU =cu CUBLASSTDLIB =c CUCOMMANDS Commands to run for CUDA files CUDA_DRIVER_VERSION CUDA_DRIVER_VERSION_STR CUDA_DRIVERS_SUPPORTED CUDA_HOME CUDA_HOME_ENV CUDA_NOATTACH =0 CUDACUDAVERSION CUDAINC CUDALIBDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda//lib64 CUDALIBDIRNAME =lib64 CUDALIBINSTALL CUDALIBSTATIC CUDAMAJOR =Linux_x86_64/21.9/cuda CUDAMATHDIR CUDAMATHINCDIR CUDAMATHLIBDIR CUDANCCLDIR CUDANCCLINCDIR CUDANCCLLIBDIR CUDANEEDED =0 CUDANVSHMEMDIR CUDANVSHMEMINCDIR CUDANVSHMEMLIBDIR CUDAROOT CUDARPATH CUDARPATHNEEDED =0 CUDARTLIBS =cudadevrt cudart CUDARTNEEDED =0 CUDARTSTATIC CUDASITELIB CUDAVER CUDAVERSION CUDAVERSIONDEFINE CUDAVSNSUFF =10 CUDAXDY =0.0 CUDAXXYY =0 CUDAXXYY1 CUDAXXYY2 =0 CUDAXY =00 CUFSUFFIX CUDA Fortran suffixes to be compiled by f90 compiler =CUF cuf CUFX =cufx CUHEADERSUFFIX =cuh CULIBOSSTATIC CUPASCUP =cup CUPHEADERSUFFIX CUPSUFFIX Suffixes for CUDA preprocessed code to be compiled by C++ compiler =cup CURDIR =/global/u2/m/madams/petsc CURRPATH =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin CUSUFFIX Suffixes for CUDA code to be compiled by C++ compiler =cu CZCCFF =-cz DDEFACCEL DDEFNOOPENMP DDEFNOSGIMP DEBUG Debug setting DEBUG2 Debug dwarf level DEBUG2DEF Debug debug dwarf level DEBUGFLAG DEBUGFLAG_64 =0 DEBUGSET DEF901ACC DEF_GNU_SOURCE DEF_PGCG_SOURCE =_PGCG_SOURCE DEFACC DEFACCDEBUG DEFACCEL =tesla host DEFACCPRESTDINC DEFACCRELOC =0 DEFAS Name of assembler program =as DEFASARGS DEFASDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin DEFASTYPE =ELF DEFAULT_COMMLIBSDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/comm_libs DEFAULT_CUDA_HOME DEFAULT_CUDAMATHDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/ DEFAULT_CUDANCCLDIR DEFAULT_CUDANVSHMEMDIR DEFAULTCAPFLAG DEFAULTCHEADERS =h DEFAULTCPPASCPP =C cpp cc cxx c++ DEFAULTCPPHEADERS =H hpp hh hxx h++ DEFAULTCUASCU =cu DEFAULTCUHEADERS =cuh DEFAULTCUPASCUP =cup DEFAULTLLVM =1 DEFBMODE =-x 123 4 DEFC99 =1 DEFCACHESIZE DEFCARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 -x 66 0x80000000 DEFCCFFVALUE =0x6CFF7 DEFCCOMPDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools DEFCEXTARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 DEFCGMANPIN DEFCLANGMCPU =-march=znver2 -mcpu=znver2 DEFCOMMON =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 DEFCOMPUTECAP =35 50 DEFCOMPUTECAPS =35 50 DEFCPP1MANPIN DEFCPPARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 DEFCPPDEFS =__PGI __NVCOMPILER _PGCG_SOURCE DEFCPPINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include DEFCPPLDARGS DEFCPPLIB DEFCPPLIBS DEFCPPSTDLIBS DEFCUDARPATH DEFCUDAVERSION =11.4 DEFDEFACCRELOC =0 DEFDEFDEF4ACCRELOC =0 DEFDEFDEFACCRELOC =0 DEFDEFS =unix __unix __unix__ linux __linux __linux__ __NO_MATH_INLINES __LP64__ __x86_64 __x86_64__ __LONG_MAX__=9223372036854775807L __SIZE_TYPE__=unsigned long int __PTRDIFF_TYPE__=long int __amd64 __amd64__ __k8 __k8__ __MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ __SSE4_1__ __SSE4_2__ __AVX__ __AVX2__ __F16C__ __FMA__ __XSAVE__ __XSAVEOPT__ __XSAVEC__ __XSAVES__ __POPCNT__ __SHA__ __AES__ __PCLMUL__ __CLFLUSHOPT__ __FSGSBASE__ __RDRND__ __BMI__ __BMI2__ __MWAITX__ __CLZERO__ DEFDEFUNSIGNED =NO DEFF901ARGS 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59 4 -tp zen2 -x 120 0x1000 -x 51 0x20 -x 124 0x1401 DEFFEXTARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 -x 51 0x20 -x 124 0x1401 DEFFLUSHVAL DEFGNU =--gnu_version=70500 -D__pgnu_vsn=70500 DEFGNU2 =-gnuvsn 70500 DEFGNUC =-def __pgnu_vsn=70500 DEFHOST =host DEFIPAEXPORTVAL DEFKEEPOBJ Default keep object file behavior DEFKEEPPREPRO Keep preprocessor file DEFLCUDAFOR2LIB DEFLCUDAFORLIB DEFLCUDALIB DEFLD Name of loader =ld DEFLDARGS Default linker args =-m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld DEFLDDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin DEFLDENDUP =/usr/lib64/gcc/x86_64-suse-linux/7/crtend.o /usr/lib64/crtn.o DEFLDSTARTUP =/usr/lib64/crt1.o /usr/lib64/crti.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o --eh-frame-hdr DEFLIBDIR =/usr/lib64 DEFLINKFILES DEFLINKOUT Default output of link step DEFLLCFASTISEL =-fast-isel=0 DEFLLCMCPU =-mcpu=native DEFLLVMMCMCPU =-mcpu=znver2 DEFLLVMOPTMCPU =-mcpu=native DEFMANMCUDALIB DEFMULTIONLY DEFMUNCHLDSTARTUP =/usr/lib64/crt1.o /usr/lib64/crti.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o --eh-frame-hdr DEFMVDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin DEFNOOPENMP DEFNOSGIMP DEFPRED =-predicate #machine(x86_64) #lint(off) #system(posix) #cpu(x86_64) DEFPREPRO Name of preprocessor program =nvprepro DEFSTDDIRS =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib /usr/lib64 /usr/lib64/gcc/x86_64-suse-linux/7 DEFSTDINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include /usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/include /usr/include DEFSTDLIBS =-lnvomp -ldl --as-needed -lnvhpcatm -latomic --no-as-needed -lpthread --start-group -lnvcpumath-avx2 -lnsnvc -lnvc --end-group -lm -lgcc -lc -lgcc -lgcc_s DEFSTDOBJDIR =/usr/lib64 DEFSTDPARCOMPUTECAP DEFSTDPATHS =-rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -rpath /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 DEFTESLAONLY =1 DEFTPVAL DEFUNSIGNED Default char is unsigned =NO DEFUSESSELIBS =1 DETECTCUDA =0 DETECTCUDAVERSION DETECTEDCAPS DEVDEBUG =0 DIALECTARGS Switches passed to C++ phase 1 =--c DLLIB =-ldl DOACCLINK =0 DODWARF =1 DOFPIC DONT_USE_GNU_SOURCE =1 DRIVER =C DRIVERCOMMAND =nvc DRIVERDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin DRIVERHOST =login18 DRIVERLANG =C DRIVERNAME =nvc DRYRUN Display but do not execute each command =0 DRYSTDINC Display standard include directories and exit dummy DYNAMICLINK This is set when creating a shared object or dynamic library =0 ECHONAME Echo file names as they are compiled =1 EDG_INCLUDES =-I- -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include --sys_include /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include --sys_include /usr/lib64/gcc/x86_64-suse-linux/7/include --sys_include /usr/local/include --sys_include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed --sys_include /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/include --sys_include /usr/include EHFRAME =--eh-frame-hdr ENABLENVVM70COMPILERFLAG =-x 187 0x40000 ENABLENVVM70GPUCODEGENERATIONFLAG =-x 187 0x8000000 ENDGROUP ENVCUDAVERSION ENVSYSINC ENVUSRINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include EXE EXPLICITFORM Form is explicitly provided EXTENSION =__extension__= EXTRAACCLNK EXTRACOMPLIBDIR EXTRACT EXTRACTINLINE EXTRACTLIB EXTRACTLIBDEF =Extract.dir EXTRACTLIBSET EXTRACTLIBVAL EXTRACTONLY EXTRACTTOC EXTRACUDAFORLIB EXTRAINIT F16C =1 F901 Name of the Fortran phase 1 module =fort1 F901ARGS Switches passed to F90 compiler =-vect 48 -x 54 1 -x 68 0x1 -x 70 0x40000000 -x 70 0x40000000 -x 68 0x1 -y 163 0xc0000000 -x 201 0xf0000000 -x 189 0x10 F901DEFARGS More switches passed to F90 compiler =-x 54 1 F901MANPIN F902 Name of the Fortran phase 2 module =fort2 F902ARGS Switches passed to F90 back end =-x 68 0x1 -x 8 0x40000000 -x 70 0x40000000 -x 56 0x10 F90E =f901 F90EXT Name of the Fortran extractor for inlining =fort2ex F90SUFFIX Suffixes to be compiled by f90 compiler =F90 f90 F f F90X =f90x FACTORIZE =0x2 FARGS Switches to Fortran compiler FBADCUDALIB FBLANKCUDALIB =0 FCGARGS Switches passed to F90 compiler back end =-x 183 4 -x 121 0x800 FCOMPCOMMANDS Fortran compile commands =f90x cufx f902 FEXTCOMMANDS Fortran extract commands =f901ext FFEARGS Switches to Fortran Front End file files FIPACGARGS FIPAVAL =-x 89 0x80800842 -x 66 0x20000 -y 89 0x40 FIPAVALUE FLAGREPLACEMENTTABLE FLANG1 Name of the Fortran phase 1 module =flang1 FLANG1ARGS Switches passed to nvflang compiler FLUSHVAL FMA =1 FMA4 FNEEDCUDA =0 FORCEDBGLLVM =0 FORCELILLVM =0 FORCELLVM =1 FORTRANMPI =fmpich FPCONTRACT =--fp-contract=on FPIC FSGSBASE =1 FTNRTL Name of f77 runtime library FULL_SSE_DEFS =__MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ __SSE4_1__ __SSE4_2__ __AVX__ __AVX2__ __F16C__ __FMA__ __XSAVE__ __XSAVEOPT__ __XSAVEC__ __XSAVES__ __POPCNT__ __SHA__ __AES__ __PCLMUL__ __CLFLUSHOPT__ __FSGSBASE__ __RDRND__ __BMI__ __BMI2__ __MWAITX__ __CLZERO__ FXSR G77DIR =/usr/lib64/gcc/x86_64-suse-linux/7/ G77LIBDIR G77LIBLIB GBASE GCCDIR =/usr/lib64/gcc/x86_64-suse-linux/7 GCCINC =/usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/include /usr/include GCCLIBS =-L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 GCCRPATH =-rpath /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 GCCVERSION =70500 GENCCFF =0 GENPREPROCESS =cpreprocess GFNI =0 GGPUFILE =0 GNUATOMIC =-latomic GPPDIR =/usr/include/c++/7 /usr/include/c++/7/x86_64-suse-linux /usr/include/c++/7/backward /usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/x86_64-suse-linux/include /usr/include GPU =0 GPU_FASTMATH =0 GPU_MATH_UNIFORM =0 GPUNKW =1 GSYS GSYSFLAG =-tp zen-64 HANDLEOTHER =copyother HASMSMPIFLIBNAME =0 HASMSMPIFLIBNAME32 =0 HASMSMPIFLIBNAME64 =0 HCOMPDIR Directory containing the F90 front ends =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools helpvalues HOSTCPP1ARGS =--llalign HOSTOBJSUFFIX Suffix for object files =o HUGELIB HUGEN HXRT_DEV =-lhxrt_dev I8STORAGE Indicates whether to include f90i8st.o object IEEE IEEE conformance IGNORECUDALIB ILDIR ILPALIGN IMPLICITSECTIONS =1 IMPORT =import IMPSW Linker switch for import libraries =-defaultlib: INFORM What level of informative messages =-inform warn INFOTPVAL =-tp zen-64 INITARGS INLINE INLINEARGLIB Inlining arguments to compiler/extractor INLINEARGS Inlining arguments to compiler/extractor INLINECARGS Inlining arguments to compiler INLINELIST Inlining arguments to compiler/extractor INLINESIZE input INTEL =0 INTRINLEVEL =4 IPA14 =0x104 IPA14r IPA66 =0x20000 IPA89 =0x80800842 IPAADD Collected command line switches that should added on the recompile IPAADDINLINE IPAADDSW Command line switches that should added on the recompile IPAC2ARGS IPA arguments passed to the f90 compiler back end IPACARGS IPA arguments passed to the compiler IPACGARGS IPADIR Directory containing IPA tools =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools IPAEXPORT IPAEXPORTVAL IPAIGNORE0 Command line switches that should not be passed on the recompile =-c -Mkeepasm -Mpreprocess IPAIGNORE1 Command line switches that should not be passed on the recompile =-Mextract -Wi -Minline IPAIGNORE2 Command line switches that should not be passed on the recompile =-L -I -l -o IPAINLINE IPAINLINELIST IPALD =ipa IPALIBCSW =--Mipainlinelibc IPALINK Run IPA linker phase 1 IPALINKENABLE IPANOARG IPARECOMPILE IPARGS Arguments to IPA linker IPAVAL =-x 89 0x80800842 -x 66 0x20000 -x 14 0x104 -y 89 0x40 IPAVALUE IPAVERBOSITY =1 IPNOP Arguments to IPA linker =-nop IPOFILE IS_CPLUS =0 ISACCLIBNEEDED =0 ISANYAVX =-avx2 ISCOMPFORGPU =0 ISCUDALIB ISCUDARTNEEDED =0 ISMCUDALIB ISSTATIC =0 ISTPHOST =0 KEEPASM Keeps the assembler file KEEPBC Keep byte-code file KEEPCCFF =-keep KEEPCCI Keeps the intermediate call context information file KEEPIL Keeps the intermediate C++ .il and F90 .ilm files KEEPLL Keeps the intermediate llvm assembly description file KEEPLLVM Keeps llvm file after the optimization KEEPOBJ Keep object file KEEPPREPRO Keep preprocessor file KEEPTEMP Keep temporary files KNL LC =-lgcc -lc -lgcc -lgcc_s LCRT1 =/usr/lib64/crt1.o LCRTB =/usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o LCRTBDEF =/usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o LCRTE =/usr/lib64/gcc/x86_64-suse-linux/7/crtend.o LCRTI =/usr/lib64/crti.o LCRTN =/usr/lib64/crtn.o LCUDAFOR2LIB LCUDAFORLIB LCUDALIB LD Name of loader =ld LDARGS Loader arguments LDDIR Directory containing loader =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin LDINPUTPOST LDINPUTPRE LDLIBARGS Loader arguments LDLIBS Loader libraries LDLIBSLIST LDSHARED LDSO =/lib64/ld-linux-x86-64.so.2 LDSWITCHES Loader switches LEVENTI LFC =-lgfortran LIBCULIBOS LIBDIR Standard linker library directory =/usr/lib64 LIBMEMIL =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/libmem.il LIBNCURSES =YES LIBRARY_PATH LIBRARY_PATH_ENV LIBSSW Linker switch for system libraries =-l LIBSUFFIX Suffix for library files =a so LIBSW Linker switch for libraries =-l LIBSW_NOLIB Linker switch for libraries with names that don't begin with lib =-l LINITACC LINITMP LINKNOBJSUFFIX Non-object suffixes to be passed to linker =a lo la LINKOBJSUFFIX Object suffixes to be passed to linker =o LINKSUFFIX Suffixes to be passed to linker =o a lo la LINUXCOMMON =-quad LLC =llc LLCARCH =-march=x86-64 LLCARGS =-non-global-value-max-name-size=4294967295 -x86-cmov-converter=0 LLCCMD =llc LLCDO LLCDONE LLCFASTISEL =-fast-isel=0 LLCFLOATABI LLCFRAMEPOINTER =--frame-pointer=none LLCISEL LLCMATTR LLCMCPU =-mcpu=znver2 LLCMODEL LLCOPT LLCOPTMAX =3 LLCPIC LLCSUFFIX =ll llvm LLCTARGET100ARGS =-x86-cmov-converter=0 LLCTARGET110ARGS =-x86-cmov-converter=0 LLCTARGET50ARGS =-x86-cmov-converter=0 LLCTARGET60ARGS =-x86-cmov-converter=0 LLCTARGET70ARGS =-x86-cmov-converter=0 LLCTARGET80ARGS =-x86-cmov-converter=0 LLCTARGET90ARGS =-x86-cmov-converter=0 LLCX86CMOV =0 LLFASTMATH =0 LLNASM =Nasm LLONLY LLOPT =opt LLOPTSUFFIX =ll llvm LLUNSAFEMATH =--enable-unsafe-fp-math --enable-no-nans-fp-math --enable-no-infs-fp-math --enable-no-signed-zeros-fp-math LLVMARGS LLVMASMONLY Keeps llvm file after the optimization LLVMCOMPBIN LLVM Utils directory =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/share/llvm/bin LLVMDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/share/llvm LLVMDO LLVMFAST =0x01 LLVMFLAGS =-x 189 0x10 LLVMFMA =0 LLVMLLCLEVEL =1 LLVMLLCLEVELOVERRIDE LLVMMC =llvm-mc LLVMMCARCH =-arch=x86-64 LLVMMCARGS LLVMMCATTR LLVMMCMCPU =-mcpu=znver2 LLVMOPT Go through LLVM opt tool LLVMOPT2PASS =NO LLVMOPTARGS =-O2 -openmp-opt-disable LLVMOPTARGS1 =-tbaa -targetlibinfo -basicaa -domtree -verify -simplifycfg -domtree -sroa -early-cse -lower-expect LLVMOPTARGS2 =-targetlibinfo -tbaa -basicaa -domtree -verify -globalopt -ipsccp -deadargelim -instcombine -simplifycfg -basiccg -prune-eh -inline -functionattrs -argpromotion -sroa -domtree -early-cse -lazy-value-info -jump-threading -correlated-propagation -simplifycfg -instcombine -tailcallelim -simplifycfg -reassociate -domtree -loops -loop-simplify -lcssa -loop-rotate -licm -lcssa -loop-unswitch -instcombine -scalar-evolution -loop-simplify -lcssa -indvars -loop-idiom -loop-deletion -loop-unroll -memdep -gvn -memdep -memcpyopt -sccp -instcombine -lazy-value-info -jump-threading -correlated-propagation -domtree -memdep -dse -adce -simplifycfg -instcombine -strip-dead-prototypes -globaldce -constmerge -globalopt -ipsccp -deadargelim -instcombine -simplifycfg -basiccg -prune-eh -inline -functionattrs -sroa -domtree -early-cse -lazy-value-info -jump-threading -correlated-propagation -simplifycfg -instcombine -tailcallelim -simplifycfg -reassociate -domtree -loops -loop-simplify -lcssa -loop-rotate -licm -lcssa -loop-unswitch -instcombine -scalar-evolution -loop-simplify -lcssa -indvars -loop-idiom -loop-deletion -loop-unroll -memdep -gvn -memdep -memcpyopt -sccp -instcombine -lazy-value-info -jump-threading -correlated-propagation -domtree -memdep -dse -adce -simplifycfg -instcombine -strip-dead-prototypes -globaldce -constmerge -domtree -verify LLVMOPTCMD =llvmopt LLVMOPTLEVEL =2 LLVMOPTLEVELOVERRIDE LLVMOPTMCPU =-mcpu=znver2 LLVMOPTOLDVECTARG LLVMOPTSKIPNATIVE =0 LLVMOPTUSERARGS LLVMOPTVECTARG LLVMVECT =YES LLVMVERFLAGS =-x 249 110 LLVMVERINT =110 LLVMVERSION =11.0 LM =-lm LMP =-lnvomp -ldl --as-needed -lnvhpcatm -latomic --no-as-needed -lpthread LMP_ONLYMP =-lnvhpckomp LMPILIB LMPIPROFLIB LNGACC =0 LNGOMP =0 LNGSPA =0 LNSPGC =-lnsnvc LOCALBINDLIB LOCALBINDPATHS LOCALCOMPLIB Local compiler library directory LOCALCOMPLIBLF LOCALDEFS LOCALRC =YES LOCSCRIPT Flag whether to include the linker script for shared objects =0 LPROFO LRTLIB LRTLIBNAME =-lrt -lpthread LSCALAPACK LTHREAD =-lpthread LTRACE =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o LWP =0 LZCNT =0 MAJOR Major release version =2021 MALIGN MANAGED =0 MANINIT =0 MANMCUDALIB MANPREFER MATHCUDALIB MATHCUDALIBLIST MAXFUNCSIZE =600 MAXTOTALSIZE =25000 MAYNEEDMANAGEDMEMORY =0 MCUDAASNEEDED MCUDAASNONEEDED MCUDALIB MEDIUM MKL_LOCATION MMX =1 MOVDIR64B =0 MOVDIRI =0 MPDEFCPP MPDEFCPPDEF MPFAIR MPFAIRDEF MPGPULINK Set if compiling OpenMP for GPU =0 MPI_EXTRAFTNOBJ MPIBASEDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich MPIBASELIB =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/lib MPIINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/include MPILIB =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/lib MPILIBDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/lib MPILIBDIRNAME =lib MPILIBINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/include MPILIBNAME =mpich MPILIBVER MPIMSINC MPIMSLIB MPIMSLIBNAME =msmpi MPISGIDIR =/opt/sgi/mpt/mpt-2.06 MPISGIINC =/opt/sgi/mpt/mpt-2.06/include MPISGILIB =/opt/sgi/mpt/mpt-2.06/lib MPISGIROOT MPITYPE =MPICH MPIUDIR MPSET MPSETCPP MPSETDEF MPSETDEFCPP MPX =0 MRTL =-lnvcpumath-avx2 MSGTPVAL =-tp zen-64 MSLINK MSMPI_INC MSMPI_LIB32 MSMPI_LIB64 MSMPIDIR MSMPIFLIBNAME =msmpifec MSMPIINC MSMPILIB32 MSMPILIB64 MULTICORETRACE =1 MUSTRESTART =0 MVECT Collected set of -Mvect options MWAITX =1 MYLOCALRC NEEDACCLIB =0 NEEDCUBLAS =0 NEEDCUDA100 NEEDCUDA110 NEEDCUDA111 NEEDCUDA80 NEEDCUDA90 NEEDCUDAALL =0 NEEDCUDACOMMPATHS =0 NEEDCUDACUBLAS =0 NEEDCUDACUFFT =0 NEEDCUDACUFFTW =0 NEEDCUDACURAND =0 NEEDCUDACUSOLVER =0 NEEDCUDACUSPARSE =0 NEEDCUDACUTENSOR =0 NEEDCUDAMATHPATHS =0 NEEDCUDANCCL =0 NEEDCUDANVBLAS =0 NEEDCUDANVLAMATH =0 NEEDCUDANVSHMEM =0 NEEDCUFFT =0 NEEDCUFFTCALLBACK =0 NEEDCUFFTW =0 NEEDCURAND =0 NEEDCUSOLVER =0 NEEDCUSPARSE =0 NEEDCUTENSOR =0 NEEDIMPLICITMANAGED =1 NEEDLOCSCRIPT Flag whether to include the linker script for shared objects =0 NEEDMANAGEDMEMORY =0 NEEDMCUDALIB =or(0,0,0,0,0,0,0,0,0,0) NEEDNCCL =0 NEEDNVBLAS =0 NEEDNVHPCLDSYMS =0 NEEDNVLAMATH =0 NEEDNVSHMEM =0 NEEDOMPAUTOOFFLOAD =0 NEEDOMPOFFLOAD =0 NEEDOMPT =0 NEWPP1 =--preinclude _cplus_preinclude.h --preinclude_macros _cplus_macros.h NEWPP2 NKEEP =0 NO_3DNOW =0 NO_3DNOWA =0 NO_ABM =0 NO_AES =0 NO_AVX =0 NO_AVX2 =0 NO_AVX512BITALG =0 NO_AVX512BW =0 NO_AVX512CD =0 NO_AVX512DQ =0 NO_AVX512ER =0 NO_AVX512F =0 NO_AVX512IFMA =0 NO_AVX512PF =0 NO_AVX512VBMI =0 NO_AVX512VBMI2 =0 NO_AVX512VL =0 NO_AVX512VPOPCNTDQ =0 NO_BMI =0 NO_BMI2 =0 NO_CLFLUSHOPT =0 NO_CLZERO =0 NO_F16C =0 NO_FMA =0 NO_FMA4 =0 NO_FSGSBASE =0 NO_FXSR =0 NO_GFNI =0 NO_LWP =0 NO_LZCNT =0 NO_MMX =0 NO_MOVDIR64B =0 NO_MOVDIRI =0 NO_MPX =0 NO_MWAITX =0 NO_PCLMUL =0 NO_PKU =0 NO_POPCNT =0 NO_PREFETCHWT1 =0 NO_RDRND =0 NO_RTM =0 NO_SHA =0 NO_SSE =0 NO_SSE2 =0 NO_SSE3 =0 NO_SSE41 =0 NO_SSE42 =0 NO_SSE4A =0 NO_SSSE3 =0 NO_TBM =0 NO_TP_OR_TP_HOST =0 NO_VAES =0 NO_VPCLMULQDQ =0 NO_XOP =0 NO_XSAVE =0 NO_XSAVEC =0 NO_XSAVEOPT =0 NO_XSAVES =0 NOASM Indicates whether to generate asm file NOASNEEDED =--no-as-needed NOBOUNDSCHECK =0 NOFRAME Indicates whether -Mnoframe is selected =YES NOILM Indicates whether to generate .ilm file NOINSTRFILELIST File exclude list for Minstrument. Looks for given path as substring of full path NOINSTRFUNCS Function exclude list for Minstrument. Looks for given string as substring of function name NOLLALIGN NOOPENMP NOPGIRPATH NORDC =0 NORPATH NOSGIMP NOSIMD256 NOSIMD512 =zen-64 NOSTARTUP Indicates whether to exclude standard startup object files NOSTATIC =0 NOSTDCPPLIBS Indicates whether to exclude standard C++ language libraries =1 NOSTDFTNLIBS Indicates whether to exclude standard Fortran language libraries NOSTDLIBDIRS Indicates whether to exclude standard library directories NOSTDLIBPATHS Indicates whether to exclude standard library directories from rpath NOSTDLIBS Indicates whether to exclude standard libraries NOWARN Suppress warning messages NVBE =nvbe NVCCHOST =0 NVCOMPILER =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9 NVCOMPILER_COMM_LIBS_HOME =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/comm_libs/ NVCOMPILER_CUDA_HOME NVCOMPILER_MATH_LIBS_HOME =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/ NVCOMPILER_NCCL_HOME NVCOMPILER_SHMEM_HOME NVDD =nvdd NVF_X86AVX =-avx2 NVHPCLDSYMS =--dynamic-list=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.syms NVHPCLDSYMSPATH =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.syms NVILINKARGS NVINCDIRENV NVLAMATH_SFX = NVLIBC_DEV =-lnvlibc_dev NVLIBSDIRENV NVLIBSENV NVOMP_DEV =-lnvomp_dev NVOMP_DEV_CUDAXY NVOMPLIB =-lnvomp NVOMPLIBS =-lnvomp -ldl NVOPTLINCDIR NVOPTLLIBS NVOPTLLIBSDIR NVVM70FLAGS =-x 187 0x40000 -x 187 0x8000000 NVVM70ISDEFAULT OBJDIR default directory in which to keep object files OBJSUFFIX Suffix for object files =o OBJSUFFIXES Suffixes for object files =o OEM_INFO =64-bit target on x86-64 Linux -tp zen-64 OFEDLIBDIR =environment(OFEDLIBDIR) OLDESTCUDASHIPPED =10.2 OLDSTDINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include OMPATMFLAGS OMPAUTOOFFLOADSUFFIX OMPAUX =-Bdynamic -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -lnvmalloc OMPCOMPUTECAPS OMPDEVLIB OMPINIT =0 OMPINITOBJ OMPINTEROPEND =-lnvomp OMPINTEROPSTART OMPLIB =-lnvomp -ldl OMPLIBDEBUG OMPLIBDEVDEBUG OMPLINKFILE OMPPRESTDINC OMPTSUFFIX OPT110ARGS =-openmp-opt-disable OPTARGS =-openmp-opt-disable OPTCARGS OPTCGARGS OPTF901ARGS OPTLEVEL Compiler optimization level =1 OPTLEVELDEF Default optimization level without -O =1 OPTLEVELINITDEF Initial default optimization level without -O =1 OPTLEVELINITDEF1 Initial default optimization level without -O =1 OPTLEVELMAX Maximum legal opt level =4 OPTLEVELMIN Minimum legal opt level =0 OTHERPREPROCESS =cpreprocess OUTFILE Output file name OVERRIDECPPDEPENDFILE OVERRIDESUFFIX PADDFLAG =-x 186 0x80 PAPIDIR Directory containing libpapi.a =/usr/local/lib PASSPIE =0 PATH =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin PCLMUL =1 PERS =nvi PERSONALITY library that resolves gxx_personality_v0 for the -Mcuda link PFX =nv PFY =nvhpc PGATM =-lnvhpcatm PGF90LIB Name of f90 runtime libraries =-lnvf PGI_CUDA_HOME PGILD =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld PGISTATIC PGISTATICX PGIUNSTATIC PGIUNSTATICX PGLEN =64 PGLLVMTARGET =yes PGLLVMVFP PGSYS =lin86 PININIT =0 PKU =0 PNM =nvnm POPCNT =1 POSTOPTIONS Default options to follow command line PREFETCHWT1 =0 PREINCLUDE PREOPTIONS Default options to preceed command line PREPRO Name of preprocessor program =nvprepro PREPROARGS Arguments to preprocessor program PREPROCONLY Stop after preprocessor PREPRODIR Directory containing preprocessor program =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin PREPROSUFFIX Suffix of preprocessor file =i PRINTRESTARTCMD =0 PROFFLAG PROFILE Use profile startup and libraries PROFILESW Use profile startup and libraries RDRND =1 READCUDAVERSION READVERSIONTXT realfiles RECIPDIV =0 REPLACESWITCHES =0 REQCUDAVERSION RESTARTENV RESTARTNAME RMARGS RTM =0 SCALARSSE SETCAPS =0 SHA =1 SIMD256 =0 SIMD512 =0 SITEASMPPSUFFIX SITEASMSUFFIX SITECPPSUFFIX SITECSUFFIX SITECUFPPSUFFIX SITECUFSUFFIX SITECUSUFFIX SITEDEF SITEF77PPSUFFIX SITEF77SUFFIX SITEF90PPSUFFIX SITEF90SUFFIX SITEINC SITELIB SITELIBSUFFIX SITEOBJSUFFIX SITERPATH SITERPATHS SMALLSIZE =5 SRCFILES List of source files SRCSUFFIX Source file suffixes =c i cpp asm cu f f90 F F90 cuf CUF SSE =1 SSE2 =1 SSE3 =1 SSE41 =1 SSE42 =1 SSE4A =1 SSEDEFS =__MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ __SSE4_1__ __SSE4_2__ __AVX__ __AVX2__ __F16C__ __FMA__ __XSAVE__ __XSAVEOPT__ __XSAVEC__ __XSAVES__ __POPCNT__ __SHA__ __AES__ __PCLMUL__ __CLFLUSHOPT__ __FSGSBASE__ __RDRND__ __BMI__ __BMI2__ __MWAITX__ __CLZERO__ SSSE3 =1 STARTGROUP STATICLIB =0 STATICSTR status =0 STDDEF =unix __unix __unix__ linux __linux __linux__ __NO_MATH_INLINES __LP64__ __x86_64 __x86_64__ __LONG_MAX__=9223372036854775807L __SIZE_TYPE__=unsigned long int __PTRDIFF_TYPE__=long int __amd64 __amd64__ __k8 __k8__ __MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ __SSE4_1__ __SSE4_2__ __AVX__ __AVX2__ __F16C__ __FMA__ __XSAVE__ __XSAVEOPT__ __XSAVEC__ __XSAVES__ __POPCNT__ __SHA__ __AES__ __PCLMUL__ __CLFLUSHOPT__ __FSGSBASE__ __RDRND__ __BMI__ __BMI2__ __MWAITX__ __CLZERO__ STDINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include /usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/include /usr/include STDOBJDIR Directory containing standard startup object files =/usr/lib64 STDPRED =-predicate #machine(x86_64) #lint(off) #system(posix) #cpu(x86_64) STDRPATH =-rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib STDRPATHLF STDRPATHMP STDRPATHSO STRICTBMODE =-x 123 4 STRIP =strip switches =-tp=zen2 -show SYS64 =linux86-64-llvm SYSACCELS =tesla SYSACCLIBS SYSACCOBJS SYSCAP =35 50 60 61 70 75 80 86 SYSTEMINC =/usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/include /usr/include SYSV_PROF Is System V profiling used TA =0 TACPU =0 TAGPU =0 TARGET Target system =linux86-64 TARGETARCH =64 TARGETCOMMON =-x 70 0x8000 -x 122 1 -x 125 0x20000 TBM =0 TGLACC =0 TGLACCCPU =0 TGLACCGPU =0 TGLACCSEQ =0 TGLOMP =0 TGLOMPCPU =0 TGLOMPGPU =0 TGLSPA =0 TGLSPACPU =0 TGLSPAGPU =0 TGT =0 TGTACC =5 TGTACCCPU =0 TGTACCGPU =0 TGTACCSEQ =0 TGTALL =0x7 TGTCPU =0x2 TGTCUDA =0 TGTCUDAX =0 TGTGPU =0x1 TGTMCUDA =0 TGTNKW =1 TGTOMP =0x2 TGTOMPCPU =0 TGTOMPGPU =0 TGTSEQ =0x4 TGTSPA =0x1 TGTSPACPU =0 TGTSPAGPU =0 TIMEINIT =0 TIMER TIMPORT =import TNVVM =nvvmd TOOLKITFLAG TPVAL =-tp zen2 TRACEBACK =OFF [ON OFF] TRACEBACKSW =OFF [ON OFF] USECUDAROOT =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/ USEFLANG1 Substituting flang1 to fort1 USELLVMAS Using either the LLVM integrated assembler or llvm-mc =0 USENVOMPDEVSTATICLIB =0 USENVOMPNVCCBITCODE =1 USENVVM70 =0 USEOTHEROMPLIB =0 USEPGICUDA =0 USER_SET_CUDA USER_SET_CUDA_HOME =0 USERASMPPSUFFIX USERASMSUFFIX USERCPPSUFFIX USERCSUFFIX USERCUFPPSUFFIX USERCUFSUFFIX USERCUSUFFIX USERF77PPSUFFIX USERF77SUFFIX USERF90PPSUFFIX USERF90SUFFIX USERLIBSUFFIX USEROBJSUFFIX USESSELIBS =1 USETPVAL =-tp zen2 USRDDEF =-D__PGLLVM__ -D__NVCOMPILER_LLVM__ -D__extension__= USRDEFDEF =-def __PGLLVM__ -def __NVCOMPILER_LLVM__ -def __extension__= USRFTNRTL Additional fortran runtime libraries USRINC USRPOSTSTDINC USRQUOTEINC USRRPATH USRSTDINC VAES =0 VECT Vector optimization level =48 VECTSSE VERBOSE Display each command as it is executed VERSION Display version of driver and tools VERSIONJSON VERSIONTXT VERYVERBOSE VLV =0 VPCLMULQDQ =0 WINCONV =nvdd WRSTR =-x 119 0x20 X86_64 =1 X86_64TARGET =YES XOP =0 XSAVE =1 XSAVEC =1 XSAVEOPT =1 XSAVES =1 ZCDEF ZCLIBS =-lnvhpcatm ZEROINIT =0 ZNVER2 Known Phases: printcudaversion phase: Extract subprograms to an extract library for later inlining: C++ Phase 1 Fortran Compiler phase 1 Preprocess files: Preprocess any file Compile or Assemble source files: C++ Phase 1 f90x cufx Fortran Compiler phase 2 LLVM assembler Assembler Preprocess assembler files IPA Linker: IPA Propagation Link object files to executable: Linker Trying C compiler flag -PIC Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -PIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: nvc-Error-Unknown switch: -PIC Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -PIC nvc-Error-Unknown switch: -PIC PETSc Error: No output file produced Rejecting compiler flag -PIC due to nonzero status from link Rejected C compiler flag -PIC because it was not compatible with shared linker cc using flags ['-qmkshrobj'] Trying C compiler flag -qPIC Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -qPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: nvc-Error-Unknown switch: -qPIC Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -qPIC nvc-Error-Unknown switch: -qPIC PETSc Error: No output file produced Rejecting compiler flag -qPIC due to nonzero status from link Rejected C compiler flag -qPIC because it was not compatible with shared linker cc using flags ['-qmkshrobj'] Trying C compiler flag -KPIC Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC Added C compiler flag -KPIC Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -qmkshrobj -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: nvc-Error-Unknown switch: -qmkshrobj Rejecting linker flag -qmkshrobj due to nonzero status from link Linker output before filtering: nvc-Error-Unknown switch: -qmkshrobj : Linker output after filtering: nvc-Error-Unknown switch: -qmkshrobj: Rejecting C linker flag -qmkshrobj due to nvc-Error-Unknown switch: -qmkshrobj ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/libconftest.so -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /usr/lib64/crt1.o: in function `_start': /home/abuild/rpmbuild/BUILD/glibc-2.26/csu/../sysdeps/x86_64/start.S:110: undefined reference to `main' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /usr/lib64/crt1.o: in function `_start': /home/abuild/rpmbuild/BUILD/glibc-2.26/csu/../sysdeps/x86_64/start.S:110: undefined reference to `main' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /usr/lib64/crt1.o: in function `_start': /home/abuild/rpmbuild/BUILD/glibc-2.26/csu/../sysdeps/x86_64/start.S:110: undefined reference to `main' pgacclnk: child process exit status 1: /usr/bin/ld: Rejected C compiler flag -KPIC because it was not compatible with shared linker cc using flags ['-qmkshrobj'] Trying C compiler flag -fPIC Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -fPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -fPIC Added C compiler flag -fPIC Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -fPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -qmkshrobj -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -fPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: nvc-Error-Unknown switch: -qmkshrobj Rejecting linker flag -qmkshrobj due to nonzero status from link Linker output before filtering: nvc-Error-Unknown switch: -qmkshrobj : Linker output after filtering: nvc-Error-Unknown switch: -qmkshrobj: Rejecting C linker flag -qmkshrobj due to nvc-Error-Unknown switch: -qmkshrobj ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -fPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/libconftest.so -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -fPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /usr/lib64/crt1.o: in function `_start': /home/abuild/rpmbuild/BUILD/glibc-2.26/csu/../sysdeps/x86_64/start.S:110: undefined reference to `main' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /usr/lib64/crt1.o: in function `_start': /home/abuild/rpmbuild/BUILD/glibc-2.26/csu/../sysdeps/x86_64/start.S:110: undefined reference to `main' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /usr/lib64/crt1.o: in function `_start': /home/abuild/rpmbuild/BUILD/glibc-2.26/csu/../sysdeps/x86_64/start.S:110: undefined reference to `main' pgacclnk: child process exit status 1: /usr/bin/ld: Rejected C compiler flag -fPIC because it was not compatible with shared linker cc using flags ['-qmkshrobj'] Trying C compiler flag -fpic Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -fpic /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -fpic Added C compiler flag -fpic Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -fpic /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -qmkshrobj -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -fpic /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: nvc-Error-Unknown switch: -qmkshrobj Rejecting linker flag -qmkshrobj due to nonzero status from link Linker output before filtering: nvc-Error-Unknown switch: -qmkshrobj : Linker output after filtering: nvc-Error-Unknown switch: -qmkshrobj: Rejecting C linker flag -qmkshrobj due to nvc-Error-Unknown switch: -qmkshrobj ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -fpic /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/libconftest.so -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -fpic /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /usr/lib64/crt1.o: in function `_start': /home/abuild/rpmbuild/BUILD/glibc-2.26/csu/../sysdeps/x86_64/start.S:110: undefined reference to `main' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /usr/lib64/crt1.o: in function `_start': /home/abuild/rpmbuild/BUILD/glibc-2.26/csu/../sysdeps/x86_64/start.S:110: undefined reference to `main' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /usr/lib64/crt1.o: in function `_start': /home/abuild/rpmbuild/BUILD/glibc-2.26/csu/../sysdeps/x86_64/start.S:110: undefined reference to `main' pgacclnk: child process exit status 1: /usr/bin/ld: Rejected C compiler flag -fpic because it was not compatible with shared linker cc using flags ['-qmkshrobj'] Trying C compiler flag Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -qmkshrobj -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: nvc-Error-Unknown switch: -qmkshrobj Rejecting linker flag -qmkshrobj due to nonzero status from link Linker output before filtering: nvc-Error-Unknown switch: -qmkshrobj : Linker output after filtering: nvc-Error-Unknown switch: -qmkshrobj: Rejecting C linker flag -qmkshrobj due to nvc-Error-Unknown switch: -qmkshrobj ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/libconftest.so -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /usr/lib64/crt1.o: in function `_start': /home/abuild/rpmbuild/BUILD/glibc-2.26/csu/../sysdeps/x86_64/start.S:110: undefined reference to `main' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /usr/lib64/crt1.o: in function `_start': /home/abuild/rpmbuild/BUILD/glibc-2.26/csu/../sysdeps/x86_64/start.S:110: undefined reference to `main' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /usr/lib64/crt1.o: in function `_start': /home/abuild/rpmbuild/BUILD/glibc-2.26/csu/../sysdeps/x86_64/start.S:110: undefined reference to `main' pgacclnk: child process exit status 1: /usr/bin/ld: Rejected C compiler flag because it was not compatible with shared linker cc using flags ['-qmkshrobj'] Deleting "LD_SHARED" Checking shared linker cc using flags ['-shared'] Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/cc...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/cc...not found Checking for program /global/common/software/nersc/bin/cc...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/cc...found Defined make macro "LD_SHARED" to "cc" Executing: cc --help | head -n 20 stdout: Usage: cc [options] file... Options: -[no-]add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options and new dtags are disabled. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]add-rpath-shared Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in specific versions of libraries at runtime for generated shared libraries. (Off by default.) -[no-]add-runpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options and new dtags are enabled. Executing: cc -qversion Executing: cc -show stdout: Known Variables: _3DNOW =0 _3DNOWA =0 ABM =1 ACC901FLAGS ACCAUTOPAR =1 ACCBUILDLIB ACCCACHE ACCCGDEF =-y 163 0xc0000000 -x 201 0xf0000000 ACCCGFLAGS ACCDEBUG ACCDEF ACCDEFDEF ACCDEFINES ACCELFLAG ACCELFLAG1 ACCELS ACCEXTRACTLIB ACCEXTRACTLIBSET ACCEXTRACTLIBSW ACCEXTRACTTOC ACCFEFLAGS ACCFLAGS ACCGPULINK Set if compiling OpenACC for GPU =0 ACCLIB ACCLIB2 ACCLIBSUFF ACCLINK ACCLLVM ACCLNK =acclnk ACCMINDEBUG ACCMULTI ACCMULTIONLY ACCPREFIX ACCPRESTDINC ACCRELOC =0 ACCREQUIRED ACCRPATH ACCTESLAONLY ACCWAIT =1 ACOPT ACTTPVAL =-tp zen2 ADDARGS ADDCUDA =0 ADDEHFRAME =1 AES =1 ALIASMODE =-x 2 0x400 ALLOCATABLE95 Use Fortran 95 allocatable semantics ANYCU =0 ANYCUF =0 AOPT APPENDMOD =1 APPENDTOOL Name of object file append module =append AS Name of assembler program =as ASARGS Arguments to assembler ASDIR Directory containing assembler program =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin ASMCOMMAND Internal command to process assembler file =asm ASMKEY =1 ASMONLY Compile and assemble, do not link ASMSUFFIX Suffix of assembler file =s ASMSUFFIXES Suffix allowed for assembler file =s ASNEEDED =--as-needed ASTYPE What type of object file to produce =ELF [COFF ELF AOUT] ATHLON =1 ATOMICLIB =--as-needed -lnvhpcatm -latomic --no-as-needed AUTOCOMPARE =0 AUTOINLINE AUTOLEVELS =10 AUTOMAXFUNCSIZE =400 AUTOMAXTOTALSIZE =128000 AVX =1 AVX2 =1 AVX512BITALG =0 AVX512BW =0 AVX512CD =0 AVX512DQ =0 AVX512ER =0 AVX512F AVX512IFMA =0 AVX512PF =0 AVX512VBMI =0 AVX512VBMI2 =0 AVX512VL AVX512VPOPCNTDQ =0 AVXEXTENSION BADCUDALIB =0 BASIC_SSE_DEFS =__MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ BLANKCUDALIB =0 BLTINLIBS BMI =1 BMI2 =1 BMODE =-x 123 4 BOUNDSCHECK =0 C99 =-x 123 0x80000000 C_INCLUDE_PATH_ENV C_ONLY =-x 123 0x80000000 CARGS Switches to C compiler =-x 123 0x80000000 -x 123 4 -x 2 0x400 -x 119 0x20 -def __pgnu_vsn=70500 -x 70 0x40000000 -x 183 4 -x 121 0x800 -x 6 0x20000 -x 122 0x400000 -y 125 0x100000 CCNEXTCOUNT =0 CCOMPCOMMANDS =cpp1 CCOMPDIR Directory containing the C compiler =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools CEXTARGS Arguments for extracting =-x 14 0x80 CG =llvm CGARGS Code Generation switches to native compiler =-x 120 0x200000 -x 70 0x40000000 -x 8 0x40000000 -x 164 0x800000 -x 85 0x2000 -x 85 0x4000 -x 34 0x40000000 -x 53 0x800000 -x 206 0x02 -x 68 0x1 -x 39 4 -x 56 0x10 -x 26 0x10 -x 26 1 -x 56 0x4000 -y 163 0xc0000000 -x 201 0xf0000000 -x 189 0x10 -y 189 0x4000000 CGMANPIN CHEADERSUFFIX =h CHECKCUDALIB =0 CLANG =clang CLANGARGS =-openmp-opt-disable CLANGCMD =clang CLANGCOMPBIN Clang directory =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/share/llvm/bin CLANGMCPU =-march=znver2 -mcpu=znver2 CLANGMODEL CLANGPIC CLANGUSERARGS CLFLUSHOPT =1 CLTPVAL =-tp zen2 CLZERO =1 COMMLIBSDIR COMMLIBSINCDIR COMMLIBSLDDIR COMMLIBSLPATHDIR COMMLIBSRPATHDIR COMPBASE =/opt/nvidia/hpc_sdk COMPBASE64 =/opt/nvidia/hpc_sdk COMPBBIN =compilers/bin COMPBIN Compiler binary directory =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin COMPBSHARE =compilers/share COMPGLIBDIR COMPGLIBLFDIR COMPILEONLY Compile, do not assemble COMPINCDIR Compiler include subdirectory =include COMPINCDIRFULL =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include COMPINCPREFIX =compilers/ COMPLIB Compiler library directory =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib COMPLIBDIR Compiler library subdirectory =lib COMPLIBLF COMPLIBLFDIR Compiler library subdirectory for large file support COMPLIBMP COMPLIBOBJ =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib COMPLIBPREFIX =compilers/ COMPLIBSO COMPLIBSTATIC COMPLIBSUBDIR =compilers/lib COMPREFIX COMPSYS =Linux_x86_64 COMPUTECAP =35 50 COMPUTECAPS =35 50 COMPVER =21.9 CONCUR Add multiprocessor thread libraries =YES CONCURCOMPILE Compiling with -Mconcur or -mp CONCURSW Add multiprocessor thread libraries =YES CONV =conv CPATH_ENV =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include CPLUS64LDARGS CPLUS_INCLUDE_PATH_ENV CPP =pgCC CPP1ARGS Switches passed to C++ phase 1 =--gnu_version=70500 -D__pgnu_vsn=70500 CPP1DEFARGS Switches passed to C++ phase 1 CPP1MANPIN CPP1ONLY C++ phase 1 only CPP2ARGS Switches passed to C++ phase 2 =-gnuvsn 70500 -x 69 0x200 -x 123 0x400 CPP2DEFARGS Switches passed to C++ phase 2 CPPASC CPPASCPP =C cpp cc cxx c++ CPPCOMP1 Name of the C++ compiler phase 1 module =cpp1 CPPCOMP2 Name of the C++ compiler phase 2 module =cpp2 CPPCOMPCOMMANDS C++ compile commands =nocpp CPPCOMPDIR Directory containing the C compiler =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools CPPDEPEND CPPDEPENDFILE CPPEXT Name of the C++ compiler extractor for inlining =cpp2ex CPPEXTCOMMANDS C++ extract commands =cpp1 CPPHEADERSUFFIX =H hpp hh hxx h++ CPPLDARGS CPPLIB CPPPREINC --preappend switches passed to C++ phase 1 =--preinclude _cplus_preinclude.h --preinclude_macros _cplus_macros.h CPPSTDLIBS CPPSUFFIX Suffixes to be compiled by C++ compiler =cpp CRTL =-lnsnvc -lnvc CSUFFIX Suffixes to be compiled by C compiler =c i CUASCU =cu CUBLASSTDLIB =c CUCOMMANDS Commands to run for CUDA files CUDA_DRIVER_VERSION CUDA_DRIVER_VERSION_STR CUDA_DRIVERS_SUPPORTED CUDA_HOME CUDA_HOME_ENV CUDA_NOATTACH =0 CUDACUDAVERSION CUDAINC CUDALIBDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda//lib64 CUDALIBDIRNAME =lib64 CUDALIBINSTALL CUDALIBSTATIC CUDAMAJOR =Linux_x86_64/21.9/cuda CUDAMATHDIR CUDAMATHINCDIR CUDAMATHLIBDIR CUDANCCLDIR CUDANCCLINCDIR CUDANCCLLIBDIR CUDANEEDED =0 CUDANVSHMEMDIR CUDANVSHMEMINCDIR CUDANVSHMEMLIBDIR CUDAROOT CUDARPATH CUDARPATHNEEDED =0 CUDARTLIBS =cudadevrt cudart CUDARTNEEDED =0 CUDARTSTATIC CUDASITELIB CUDAVER CUDAVERSION CUDAVERSIONDEFINE CUDAVSNSUFF =10 CUDAXDY =0.0 CUDAXXYY =0 CUDAXXYY1 CUDAXXYY2 =0 CUDAXY =00 CUFSUFFIX CUDA Fortran suffixes to be compiled by f90 compiler =CUF cuf CUFX =cufx CUHEADERSUFFIX =cuh CULIBOSSTATIC CUPASCUP =cup CUPHEADERSUFFIX CUPSUFFIX Suffixes for CUDA preprocessed code to be compiled by C++ compiler =cup CURDIR =/global/u2/m/madams/petsc CURRPATH =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin CUSUFFIX Suffixes for CUDA code to be compiled by C++ compiler =cu CZCCFF =-cz DDEFACCEL DDEFNOOPENMP DDEFNOSGIMP DEBUG Debug setting DEBUG2 Debug dwarf level DEBUG2DEF Debug debug dwarf level DEBUGFLAG DEBUGFLAG_64 =0 DEBUGSET DEF901ACC DEF_GNU_SOURCE DEF_PGCG_SOURCE =_PGCG_SOURCE DEFACC DEFACCDEBUG DEFACCEL =tesla host DEFACCPRESTDINC DEFACCRELOC =0 DEFAS Name of assembler program =as DEFASARGS DEFASDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin DEFASTYPE =ELF DEFAULT_COMMLIBSDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/comm_libs DEFAULT_CUDA_HOME DEFAULT_CUDAMATHDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/ DEFAULT_CUDANCCLDIR DEFAULT_CUDANVSHMEMDIR DEFAULTCAPFLAG DEFAULTCHEADERS =h DEFAULTCPPASCPP =C cpp cc cxx c++ DEFAULTCPPHEADERS =H hpp hh hxx h++ DEFAULTCUASCU =cu DEFAULTCUHEADERS =cuh DEFAULTCUPASCUP =cup DEFAULTLLVM =1 DEFBMODE =-x 123 4 DEFC99 =1 DEFCACHESIZE DEFCARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 -x 66 0x80000000 DEFCCFFVALUE =0x6CFF7 DEFCCOMPDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools DEFCEXTARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 DEFCGMANPIN DEFCLANGMCPU =-march=znver2 -mcpu=znver2 DEFCOMMON =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 DEFCOMPUTECAP =35 50 DEFCOMPUTECAPS =35 50 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Display but do not execute each command =0 DRYSTDINC Display standard include directories and exit dummy DYNAMICLINK This is set when creating a shared object or dynamic library =0 ECHONAME Echo file names as they are compiled =1 EDG_INCLUDES =-I- -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include --sys_include /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include --sys_include /usr/lib64/gcc/x86_64-suse-linux/7/include --sys_include /usr/local/include --sys_include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed --sys_include /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/include --sys_include /usr/include EHFRAME =--eh-frame-hdr ENABLENVVM70COMPILERFLAG =-x 187 0x40000 ENABLENVVM70GPUCODEGENERATIONFLAG =-x 187 0x8000000 ENDGROUP ENVCUDAVERSION ENVSYSINC ENVUSRINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include EXE EXPLICITFORM Form is explicitly provided EXTENSION =__extension__= EXTRAACCLNK EXTRACOMPLIBDIR EXTRACT EXTRACTINLINE EXTRACTLIB EXTRACTLIBDEF =Extract.dir EXTRACTLIBSET EXTRACTLIBVAL EXTRACTONLY EXTRACTTOC EXTRACUDAFORLIB EXTRAINIT F16C =1 F901 Name of the Fortran phase 1 module =fort1 F901ARGS Switches passed to F90 compiler =-vect 48 -x 54 1 -x 68 0x1 -x 70 0x40000000 -x 70 0x40000000 -x 68 0x1 -y 163 0xc0000000 -x 201 0xf0000000 -x 189 0x10 F901DEFARGS More switches passed to F90 compiler =-x 54 1 F901MANPIN F902 Name of the Fortran phase 2 module =fort2 F902ARGS Switches passed to F90 back end =-x 68 0x1 -x 8 0x40000000 -x 70 0x40000000 -x 56 0x10 F90E =f901 F90EXT Name of the Fortran extractor for inlining =fort2ex F90SUFFIX Suffixes to be compiled by f90 compiler =F90 f90 F f F90X =f90x FACTORIZE =0x2 FARGS Switches to Fortran compiler FBADCUDALIB FBLANKCUDALIB =0 FCGARGS Switches passed to F90 compiler back end =-x 183 4 -x 121 0x800 FCOMPCOMMANDS Fortran compile commands =f90x cufx f902 FEXTCOMMANDS Fortran extract commands =f901ext FFEARGS Switches to Fortran Front End file files FIPACGARGS FIPAVAL =-x 89 0x80800842 -x 66 0x20000 -y 89 0x40 FIPAVALUE FLAGREPLACEMENTTABLE FLANG1 Name of the Fortran phase 1 module =flang1 FLANG1ARGS Switches passed to nvflang compiler FLUSHVAL FMA =1 FMA4 FNEEDCUDA =0 FORCEDBGLLVM =0 FORCELILLVM =0 FORCELLVM =1 FORTRANMPI =fmpich FPCONTRACT =--fp-contract=on FPIC FSGSBASE =1 FTNRTL Name of f77 runtime library FULL_SSE_DEFS =__MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ __SSE4_1__ __SSE4_2__ __AVX__ __AVX2__ __F16C__ __FMA__ __XSAVE__ __XSAVEOPT__ __XSAVEC__ __XSAVES__ __POPCNT__ __SHA__ __AES__ __PCLMUL__ __CLFLUSHOPT__ __FSGSBASE__ __RDRND__ __BMI__ __BMI2__ __MWAITX__ __CLZERO__ FXSR G77DIR =/usr/lib64/gcc/x86_64-suse-linux/7/ G77LIBDIR G77LIBLIB GBASE GCCDIR =/usr/lib64/gcc/x86_64-suse-linux/7 GCCINC =/usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/include /usr/include GCCLIBS =-L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 GCCRPATH =-rpath /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 GCCVERSION =70500 GENCCFF =0 GENPREPROCESS =cpreprocess GFNI =0 GGPUFILE =0 GNUATOMIC =-latomic GPPDIR =/usr/include/c++/7 /usr/include/c++/7/x86_64-suse-linux /usr/include/c++/7/backward /usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/x86_64-suse-linux/include /usr/include GPU =0 GPU_FASTMATH =0 GPU_MATH_UNIFORM =0 GPUNKW =1 GSYS GSYSFLAG =-tp zen-64 HANDLEOTHER =copyother HASMSMPIFLIBNAME =0 HASMSMPIFLIBNAME32 =0 HASMSMPIFLIBNAME64 =0 HCOMPDIR Directory containing the F90 front ends =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools helpvalues HOSTCPP1ARGS =--llalign HOSTOBJSUFFIX Suffix for object files =o HUGELIB HUGEN HXRT_DEV =-lhxrt_dev I8STORAGE Indicates whether to include f90i8st.o object IEEE IEEE conformance IGNORECUDALIB ILDIR ILPALIGN IMPLICITSECTIONS =1 IMPORT =import IMPSW Linker switch for import libraries =-defaultlib: INFORM What level of informative messages =-inform warn INFOTPVAL =-tp zen-64 INITARGS INLINE INLINEARGLIB Inlining arguments to compiler/extractor INLINEARGS Inlining arguments to compiler/extractor INLINECARGS Inlining arguments to compiler INLINELIST Inlining arguments to compiler/extractor INLINESIZE input INTEL =0 INTRINLEVEL =4 IPA14 =0x104 IPA14r IPA66 =0x20000 IPA89 =0x80800842 IPAADD Collected command line switches that should added on the recompile IPAADDINLINE IPAADDSW Command line switches that should added on the recompile IPAC2ARGS IPA arguments passed to the f90 compiler back end IPACARGS IPA arguments passed to the compiler IPACGARGS IPADIR Directory containing IPA tools =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools IPAEXPORT IPAEXPORTVAL IPAIGNORE0 Command line switches that should not be passed on the recompile =-c -Mkeepasm -Mpreprocess IPAIGNORE1 Command line switches that should not be passed on the recompile =-Mextract -Wi -Minline IPAIGNORE2 Command line switches that should not be passed on the recompile =-L -I -l -o IPAINLINE IPAINLINELIST IPALD =ipa IPALIBCSW =--Mipainlinelibc IPALINK Run IPA linker phase 1 IPALINKENABLE IPANOARG IPARECOMPILE IPARGS Arguments to IPA linker IPAVAL =-x 89 0x80800842 -x 66 0x20000 -x 14 0x104 -y 89 0x40 IPAVALUE IPAVERBOSITY =1 IPNOP Arguments to IPA linker =-nop IPOFILE IS_CPLUS =0 ISACCLIBNEEDED =0 ISANYAVX =-avx2 ISCOMPFORGPU =0 ISCUDALIB ISCUDARTNEEDED =0 ISMCUDALIB ISSTATIC =0 ISTPHOST =0 KEEPASM Keeps the assembler file KEEPBC Keep byte-code file KEEPCCFF =-keep KEEPCCI Keeps the intermediate call context information file KEEPIL Keeps the intermediate C++ .il and F90 .ilm files KEEPLL Keeps the intermediate llvm assembly description file KEEPLLVM Keeps llvm file after the optimization KEEPOBJ Keep object file KEEPPREPRO Keep preprocessor file KEEPTEMP Keep temporary files KNL LC =-lgcc -lc -lgcc -lgcc_s LCRT1 =/usr/lib64/crt1.o LCRTB =/usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o LCRTBDEF =/usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o LCRTE =/usr/lib64/gcc/x86_64-suse-linux/7/crtend.o LCRTI =/usr/lib64/crti.o LCRTN =/usr/lib64/crtn.o LCUDAFOR2LIB LCUDAFORLIB LCUDALIB LD Name of loader =ld LDARGS Loader arguments LDDIR Directory containing loader =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin LDINPUTPOST LDINPUTPRE LDLIBARGS Loader arguments LDLIBS Loader libraries LDLIBSLIST LDSHARED LDSO =/lib64/ld-linux-x86-64.so.2 LDSWITCHES Loader switches LEVENTI LFC =-lgfortran LIBCULIBOS LIBDIR Standard linker library directory =/usr/lib64 LIBMEMIL =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/libmem.il LIBNCURSES =YES LIBRARY_PATH LIBRARY_PATH_ENV LIBSSW Linker switch for system libraries =-l LIBSUFFIX Suffix for library files =a so LIBSW Linker switch for libraries =-l LIBSW_NOLIB Linker switch for libraries with names that don't begin with lib =-l LINITACC LINITMP LINKNOBJSUFFIX Non-object suffixes to be passed to linker =a lo la LINKOBJSUFFIX Object suffixes to be passed to linker =o LINKSUFFIX Suffixes to be passed to linker =o a lo la LINUXCOMMON =-quad LLC =llc LLCARCH =-march=x86-64 LLCARGS =-non-global-value-max-name-size=4294967295 -x86-cmov-converter=0 LLCCMD =llc LLCDO LLCDONE LLCFASTISEL =-fast-isel=0 LLCFLOATABI LLCFRAMEPOINTER =--frame-pointer=none LLCISEL LLCMATTR LLCMCPU =-mcpu=znver2 LLCMODEL LLCOPT LLCOPTMAX =3 LLCPIC LLCSUFFIX =ll llvm LLCTARGET100ARGS =-x86-cmov-converter=0 LLCTARGET110ARGS =-x86-cmov-converter=0 LLCTARGET50ARGS =-x86-cmov-converter=0 LLCTARGET60ARGS =-x86-cmov-converter=0 LLCTARGET70ARGS =-x86-cmov-converter=0 LLCTARGET80ARGS =-x86-cmov-converter=0 LLCTARGET90ARGS =-x86-cmov-converter=0 LLCX86CMOV =0 LLFASTMATH =0 LLNASM =Nasm LLONLY LLOPT =opt LLOPTSUFFIX =ll llvm LLUNSAFEMATH =--enable-unsafe-fp-math --enable-no-nans-fp-math --enable-no-infs-fp-math --enable-no-signed-zeros-fp-math LLVMARGS LLVMASMONLY Keeps llvm file after the optimization LLVMCOMPBIN LLVM Utils directory =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/share/llvm/bin LLVMDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/share/llvm LLVMDO LLVMFAST =0x01 LLVMFLAGS =-x 189 0x10 LLVMFMA =0 LLVMLLCLEVEL =1 LLVMLLCLEVELOVERRIDE LLVMMC =llvm-mc LLVMMCARCH =-arch=x86-64 LLVMMCARGS LLVMMCATTR LLVMMCMCPU =-mcpu=znver2 LLVMOPT Go through LLVM opt tool LLVMOPT2PASS =NO LLVMOPTARGS =-O2 -openmp-opt-disable LLVMOPTARGS1 =-tbaa -targetlibinfo -basicaa -domtree -verify -simplifycfg -domtree -sroa -early-cse -lower-expect LLVMOPTARGS2 =-targetlibinfo -tbaa -basicaa -domtree -verify -globalopt -ipsccp -deadargelim -instcombine -simplifycfg -basiccg -prune-eh -inline -functionattrs -argpromotion -sroa -domtree -early-cse -lazy-value-info -jump-threading -correlated-propagation -simplifycfg -instcombine -tailcallelim -simplifycfg -reassociate -domtree -loops -loop-simplify -lcssa -loop-rotate -licm -lcssa -loop-unswitch -instcombine -scalar-evolution -loop-simplify -lcssa -indvars -loop-idiom -loop-deletion -loop-unroll -memdep -gvn -memdep -memcpyopt -sccp -instcombine -lazy-value-info -jump-threading -correlated-propagation -domtree -memdep -dse -adce -simplifycfg -instcombine -strip-dead-prototypes -globaldce -constmerge -globalopt -ipsccp -deadargelim -instcombine -simplifycfg -basiccg -prune-eh -inline -functionattrs -sroa -domtree -early-cse -lazy-value-info -jump-threading -correlated-propagation -simplifycfg -instcombine -tailcallelim -simplifycfg -reassociate -domtree -loops -loop-simplify -lcssa -loop-rotate -licm -lcssa -loop-unswitch -instcombine -scalar-evolution -loop-simplify -lcssa -indvars -loop-idiom -loop-deletion -loop-unroll -memdep -gvn -memdep -memcpyopt -sccp -instcombine -lazy-value-info -jump-threading -correlated-propagation -domtree -memdep -dse -adce -simplifycfg -instcombine -strip-dead-prototypes -globaldce -constmerge -domtree -verify LLVMOPTCMD =llvmopt LLVMOPTLEVEL =2 LLVMOPTLEVELOVERRIDE LLVMOPTMCPU =-mcpu=znver2 LLVMOPTOLDVECTARG LLVMOPTSKIPNATIVE =0 LLVMOPTUSERARGS LLVMOPTVECTARG LLVMVECT =YES LLVMVERFLAGS =-x 249 110 LLVMVERINT =110 LLVMVERSION =11.0 LM =-lm LMP =-lnvomp -ldl --as-needed -lnvhpcatm -latomic --no-as-needed -lpthread LMP_ONLYMP =-lnvhpckomp LMPILIB LMPIPROFLIB LNGACC =0 LNGOMP =0 LNGSPA =0 LNSPGC =-lnsnvc LOCALBINDLIB LOCALBINDPATHS LOCALCOMPLIB Local compiler library directory LOCALCOMPLIBLF LOCALDEFS LOCALRC =YES LOCSCRIPT Flag whether to include the linker script for shared objects =0 LPROFO LRTLIB LRTLIBNAME =-lrt -lpthread LSCALAPACK LTHREAD =-lpthread LTRACE =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o LWP =0 LZCNT =0 MAJOR Major release version =2021 MALIGN MANAGED =0 MANINIT =0 MANMCUDALIB MANPREFER MATHCUDALIB MATHCUDALIBLIST MAXFUNCSIZE =600 MAXTOTALSIZE =25000 MAYNEEDMANAGEDMEMORY =0 MCUDAASNEEDED MCUDAASNONEEDED MCUDALIB MEDIUM MKL_LOCATION MMX =1 MOVDIR64B =0 MOVDIRI =0 MPDEFCPP MPDEFCPPDEF MPFAIR MPFAIRDEF MPGPULINK Set if compiling OpenMP for GPU =0 MPI_EXTRAFTNOBJ MPIBASEDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich MPIBASELIB =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/lib MPIINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/include MPILIB =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/lib MPILIBDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/lib MPILIBDIRNAME =lib MPILIBINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/include MPILIBNAME =mpich MPILIBVER MPIMSINC MPIMSLIB MPIMSLIBNAME =msmpi MPISGIDIR =/opt/sgi/mpt/mpt-2.06 MPISGIINC =/opt/sgi/mpt/mpt-2.06/include MPISGILIB =/opt/sgi/mpt/mpt-2.06/lib MPISGIROOT MPITYPE =MPICH MPIUDIR MPSET MPSETCPP MPSETDEF MPSETDEFCPP MPX =0 MRTL =-lnvcpumath-avx2 MSGTPVAL =-tp zen-64 MSLINK MSMPI_INC MSMPI_LIB32 MSMPI_LIB64 MSMPIDIR MSMPIFLIBNAME =msmpifec MSMPIINC MSMPILIB32 MSMPILIB64 MULTICORETRACE =1 MUSTRESTART =0 MVECT Collected set of -Mvect options MWAITX =1 MYLOCALRC NEEDACCLIB =0 NEEDCUBLAS =0 NEEDCUDA100 NEEDCUDA110 NEEDCUDA111 NEEDCUDA80 NEEDCUDA90 NEEDCUDAALL =0 NEEDCUDACOMMPATHS =0 NEEDCUDACUBLAS =0 NEEDCUDACUFFT =0 NEEDCUDACUFFTW =0 NEEDCUDACURAND =0 NEEDCUDACUSOLVER =0 NEEDCUDACUSPARSE =0 NEEDCUDACUTENSOR =0 NEEDCUDAMATHPATHS =0 NEEDCUDANCCL =0 NEEDCUDANVBLAS =0 NEEDCUDANVLAMATH =0 NEEDCUDANVSHMEM =0 NEEDCUFFT =0 NEEDCUFFTCALLBACK =0 NEEDCUFFTW =0 NEEDCURAND =0 NEEDCUSOLVER =0 NEEDCUSPARSE =0 NEEDCUTENSOR =0 NEEDIMPLICITMANAGED =1 NEEDLOCSCRIPT Flag whether to include the linker script for shared objects =0 NEEDMANAGEDMEMORY =0 NEEDMCUDALIB =or(0,0,0,0,0,0,0,0,0,0) NEEDNCCL =0 NEEDNVBLAS =0 NEEDNVHPCLDSYMS =0 NEEDNVLAMATH =0 NEEDNVSHMEM =0 NEEDOMPAUTOOFFLOAD =0 NEEDOMPOFFLOAD =0 NEEDOMPT =0 NEWPP1 =--preinclude _cplus_preinclude.h --preinclude_macros _cplus_macros.h NEWPP2 NKEEP =0 NO_3DNOW =0 NO_3DNOWA =0 NO_ABM =0 NO_AES =0 NO_AVX =0 NO_AVX2 =0 NO_AVX512BITALG =0 NO_AVX512BW =0 NO_AVX512CD =0 NO_AVX512DQ =0 NO_AVX512ER =0 NO_AVX512F =0 NO_AVX512IFMA =0 NO_AVX512PF =0 NO_AVX512VBMI =0 NO_AVX512VBMI2 =0 NO_AVX512VL =0 NO_AVX512VPOPCNTDQ =0 NO_BMI =0 NO_BMI2 =0 NO_CLFLUSHOPT =0 NO_CLZERO =0 NO_F16C =0 NO_FMA =0 NO_FMA4 =0 NO_FSGSBASE =0 NO_FXSR =0 NO_GFNI =0 NO_LWP =0 NO_LZCNT =0 NO_MMX =0 NO_MOVDIR64B =0 NO_MOVDIRI =0 NO_MPX =0 NO_MWAITX =0 NO_PCLMUL =0 NO_PKU =0 NO_POPCNT =0 NO_PREFETCHWT1 =0 NO_RDRND =0 NO_RTM =0 NO_SHA =0 NO_SSE =0 NO_SSE2 =0 NO_SSE3 =0 NO_SSE41 =0 NO_SSE42 =0 NO_SSE4A =0 NO_SSSE3 =0 NO_TBM =0 NO_TP_OR_TP_HOST =0 NO_VAES =0 NO_VPCLMULQDQ =0 NO_XOP =0 NO_XSAVE =0 NO_XSAVEC =0 NO_XSAVEOPT =0 NO_XSAVES =0 NOASM Indicates whether to generate asm file NOASNEEDED =--no-as-needed NOBOUNDSCHECK =0 NOFRAME Indicates whether -Mnoframe is selected =YES NOILM Indicates whether to generate .ilm file NOINSTRFILELIST File exclude list for Minstrument. Looks for given path as substring of full path NOINSTRFUNCS Function exclude list for Minstrument. Looks for given string as substring of function name NOLLALIGN NOOPENMP NOPGIRPATH NORDC =0 NORPATH NOSGIMP NOSIMD256 NOSIMD512 =zen-64 NOSTARTUP Indicates whether to exclude standard startup object files NOSTATIC =0 NOSTDCPPLIBS Indicates whether to exclude standard C++ language libraries =1 NOSTDFTNLIBS Indicates whether to exclude standard Fortran language libraries NOSTDLIBDIRS Indicates whether to exclude standard library directories NOSTDLIBPATHS Indicates whether to exclude standard library directories from rpath NOSTDLIBS Indicates whether to exclude standard libraries NOWARN Suppress warning messages NVBE =nvbe NVCCHOST =0 NVCOMPILER =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9 NVCOMPILER_COMM_LIBS_HOME =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/comm_libs/ NVCOMPILER_CUDA_HOME NVCOMPILER_MATH_LIBS_HOME =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/ NVCOMPILER_NCCL_HOME NVCOMPILER_SHMEM_HOME NVDD =nvdd NVF_X86AVX =-avx2 NVHPCLDSYMS =--dynamic-list=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.syms NVHPCLDSYMSPATH =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.syms NVILINKARGS NVINCDIRENV NVLAMATH_SFX = NVLIBC_DEV =-lnvlibc_dev NVLIBSDIRENV NVLIBSENV NVOMP_DEV =-lnvomp_dev NVOMP_DEV_CUDAXY NVOMPLIB =-lnvomp NVOMPLIBS =-lnvomp -ldl NVOPTLINCDIR NVOPTLLIBS NVOPTLLIBSDIR NVVM70FLAGS =-x 187 0x40000 -x 187 0x8000000 NVVM70ISDEFAULT OBJDIR default directory in which to keep object files OBJSUFFIX Suffix for object files =o OBJSUFFIXES Suffixes for object files =o OEM_INFO =64-bit target on x86-64 Linux -tp zen-64 OFEDLIBDIR =environment(OFEDLIBDIR) OLDESTCUDASHIPPED =10.2 OLDSTDINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include OMPATMFLAGS OMPAUTOOFFLOADSUFFIX OMPAUX =-Bdynamic -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -lnvmalloc OMPCOMPUTECAPS OMPDEVLIB OMPINIT =0 OMPINITOBJ OMPINTEROPEND =-lnvomp OMPINTEROPSTART OMPLIB =-lnvomp -ldl OMPLIBDEBUG OMPLIBDEVDEBUG OMPLINKFILE OMPPRESTDINC OMPTSUFFIX OPT110ARGS =-openmp-opt-disable OPTARGS =-openmp-opt-disable OPTCARGS OPTCGARGS OPTF901ARGS OPTLEVEL Compiler optimization level =1 OPTLEVELDEF Default optimization level without -O =1 OPTLEVELINITDEF Initial default optimization level without -O =1 OPTLEVELINITDEF1 Initial default optimization level without -O =1 OPTLEVELMAX Maximum legal opt level =4 OPTLEVELMIN Minimum legal opt level =0 OTHERPREPROCESS =cpreprocess OUTFILE Output file name OVERRIDECPPDEPENDFILE OVERRIDESUFFIX PADDFLAG =-x 186 0x80 PAPIDIR Directory containing libpapi.a =/usr/local/lib PASSPIE =0 PATH =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin PCLMUL =1 PERS =nvi PERSONALITY library that resolves gxx_personality_v0 for the -Mcuda link PFX =nv PFY =nvhpc PGATM =-lnvhpcatm PGF90LIB Name of f90 runtime libraries =-lnvf PGI_CUDA_HOME PGILD =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld PGISTATIC PGISTATICX PGIUNSTATIC PGIUNSTATICX PGLEN =64 PGLLVMTARGET =yes PGLLVMVFP PGSYS =lin86 PININIT =0 PKU =0 PNM =nvnm POPCNT =1 POSTOPTIONS Default options to follow command line PREFETCHWT1 =0 PREINCLUDE PREOPTIONS Default options to preceed command line PREPRO Name of preprocessor program =nvprepro PREPROARGS Arguments to preprocessor program PREPROCONLY Stop after preprocessor PREPRODIR Directory containing preprocessor program =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin PREPROSUFFIX Suffix of preprocessor file =i PRINTRESTARTCMD =0 PROFFLAG PROFILE Use profile startup and libraries PROFILESW Use profile startup and libraries RDRND =1 READCUDAVERSION READVERSIONTXT realfiles RECIPDIV =0 REPLACESWITCHES =0 REQCUDAVERSION RESTARTENV RESTARTNAME RMARGS RTM =0 SCALARSSE SETCAPS =0 SHA =1 SIMD256 =0 SIMD512 =0 SITEASMPPSUFFIX SITEASMSUFFIX SITECPPSUFFIX SITECSUFFIX SITECUFPPSUFFIX SITECUFSUFFIX SITECUSUFFIX SITEDEF SITEF77PPSUFFIX SITEF77SUFFIX SITEF90PPSUFFIX SITEF90SUFFIX SITEINC SITELIB SITELIBSUFFIX SITEOBJSUFFIX SITERPATH SITERPATHS SMALLSIZE =5 SRCFILES List of source files SRCSUFFIX Source file suffixes =c i cpp asm cu f f90 F F90 cuf CUF SSE =1 SSE2 =1 SSE3 =1 SSE41 =1 SSE42 =1 SSE4A =1 SSEDEFS =__MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ __SSE4_1__ __SSE4_2__ __AVX__ __AVX2__ __F16C__ __FMA__ __XSAVE__ __XSAVEOPT__ __XSAVEC__ __XSAVES__ __POPCNT__ __SHA__ __AES__ __PCLMUL__ __CLFLUSHOPT__ __FSGSBASE__ __RDRND__ __BMI__ __BMI2__ __MWAITX__ __CLZERO__ SSSE3 =1 STARTGROUP STATICLIB =0 STATICSTR status =0 STDDEF =unix __unix __unix__ linux __linux __linux__ __NO_MATH_INLINES __LP64__ __x86_64 __x86_64__ __LONG_MAX__=9223372036854775807L __SIZE_TYPE__=unsigned long int __PTRDIFF_TYPE__=long int __amd64 __amd64__ __k8 __k8__ __MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ __SSE4_1__ __SSE4_2__ __AVX__ __AVX2__ __F16C__ __FMA__ __XSAVE__ __XSAVEOPT__ __XSAVEC__ __XSAVES__ __POPCNT__ __SHA__ __AES__ __PCLMUL__ __CLFLUSHOPT__ __FSGSBASE__ __RDRND__ __BMI__ __BMI2__ __MWAITX__ __CLZERO__ STDINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include /usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/include /usr/include STDOBJDIR Directory containing standard startup object files =/usr/lib64 STDPRED =-predicate #machine(x86_64) #lint(off) #system(posix) #cpu(x86_64) STDRPATH =-rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib STDRPATHLF STDRPATHMP STDRPATHSO STRICTBMODE =-x 123 4 STRIP =strip switches =-tp=zen2 -show SYS64 =linux86-64-llvm SYSACCELS =tesla SYSACCLIBS SYSACCOBJS SYSCAP =35 50 60 61 70 75 80 86 SYSTEMINC =/usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/include /usr/include SYSV_PROF Is System V profiling used TA =0 TACPU =0 TAGPU =0 TARGET Target system =linux86-64 TARGETARCH =64 TARGETCOMMON =-x 70 0x8000 -x 122 1 -x 125 0x20000 TBM =0 TGLACC =0 TGLACCCPU =0 TGLACCGPU =0 TGLACCSEQ =0 TGLOMP =0 TGLOMPCPU =0 TGLOMPGPU =0 TGLSPA =0 TGLSPACPU =0 TGLSPAGPU =0 TGT =0 TGTACC =5 TGTACCCPU =0 TGTACCGPU =0 TGTACCSEQ =0 TGTALL =0x7 TGTCPU =0x2 TGTCUDA =0 TGTCUDAX =0 TGTGPU =0x1 TGTMCUDA =0 TGTNKW =1 TGTOMP =0x2 TGTOMPCPU =0 TGTOMPGPU =0 TGTSEQ =0x4 TGTSPA =0x1 TGTSPACPU =0 TGTSPAGPU =0 TIMEINIT =0 TIMER TIMPORT =import TNVVM =nvvmd TOOLKITFLAG TPVAL =-tp zen2 TRACEBACK =OFF [ON OFF] TRACEBACKSW =OFF [ON OFF] USECUDAROOT =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/ USEFLANG1 Substituting flang1 to fort1 USELLVMAS Using either the LLVM integrated assembler or llvm-mc =0 USENVOMPDEVSTATICLIB =0 USENVOMPNVCCBITCODE =1 USENVVM70 =0 USEOTHEROMPLIB =0 USEPGICUDA =0 USER_SET_CUDA USER_SET_CUDA_HOME =0 USERASMPPSUFFIX USERASMSUFFIX USERCPPSUFFIX USERCSUFFIX USERCUFPPSUFFIX USERCUFSUFFIX USERCUSUFFIX USERF77PPSUFFIX USERF77SUFFIX USERF90PPSUFFIX USERF90SUFFIX USERLIBSUFFIX USEROBJSUFFIX USESSELIBS =1 USETPVAL =-tp zen2 USRDDEF =-D__PGLLVM__ -D__NVCOMPILER_LLVM__ -D__extension__= USRDEFDEF =-def __PGLLVM__ -def __NVCOMPILER_LLVM__ -def __extension__= USRFTNRTL Additional fortran runtime libraries USRINC USRPOSTSTDINC USRQUOTEINC USRRPATH USRSTDINC VAES =0 VECT Vector optimization level =48 VECTSSE VERBOSE Display each command as it is executed VERSION Display version of driver and tools VERSIONJSON VERSIONTXT VERYVERBOSE VLV =0 VPCLMULQDQ =0 WINCONV =nvdd WRSTR =-x 119 0x20 X86_64 =1 X86_64TARGET =YES XOP =0 XSAVE =1 XSAVEC =1 XSAVEOPT =1 XSAVES =1 ZCDEF ZCLIBS =-lnvhpcatm ZEROINIT =0 ZNVER2 Known Phases: printcudaversion phase: Extract subprograms to an extract library for later inlining: C++ Phase 1 Fortran Compiler phase 1 Preprocess files: Preprocess any file Compile or Assemble source files: C++ Phase 1 f90x cufx Fortran Compiler phase 2 LLVM assembler Assembler Preprocess assembler files IPA Linker: IPA Propagation Link object files to executable: Linker Trying C compiler flag -PIC Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -PIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: nvc-Error-Unknown switch: -PIC Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -PIC nvc-Error-Unknown switch: -PIC PETSc Error: No output file produced Rejecting compiler flag -PIC due to nonzero status from link Rejected C compiler flag -PIC because it was not compatible with shared linker cc using flags ['-shared'] Trying C compiler flag -qPIC Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -qPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: nvc-Error-Unknown switch: -qPIC Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -qPIC nvc-Error-Unknown switch: -qPIC PETSc Error: No output file produced Rejecting compiler flag -qPIC due to nonzero status from link Rejected C compiler flag -qPIC because it was not compatible with shared linker cc using flags ['-shared'] Trying C compiler flag -KPIC Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC Added C compiler flag -KPIC Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Valid C linker flag -shared ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/libconftest.so -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -L/tmp/petsc-AzrmlS/config.setCompilers -lconftest Using shared linker cc with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux ============================================================================================= TESTING: checkPIC from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1450) Determine the PIC option for each compiler Executing: CC --help | head -n 20 stdout: Usage: CC [options] file... Options: -[no-]add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options and new dtags are disabled. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]add-rpath-shared Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in specific versions of libraries at runtime for generated shared libraries. (Off by default.) -[no-]add-runpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options and new dtags are enabled. Executing: CC -qversion Executing: CC -show stdout: Known Variables: _3DNOW =0 _3DNOWA =0 ABM =1 ACC901FLAGS ACCAUTOPAR =1 ACCBUILDLIB ACCCACHE ACCCGDEF =-y 163 0xc0000000 -x 201 0xf0000000 ACCCGFLAGS ACCDEBUG ACCDEF ACCDEFDEF ACCDEFINES ACCELFLAG ACCELFLAG1 ACCELS ACCEXTRACTLIB ACCEXTRACTLIBSET ACCEXTRACTLIBSW ACCEXTRACTTOC ACCFEFLAGS ACCFLAGS ACCGPULINK Set if compiling OpenACC for GPU =0 ACCLIB ACCLIB2 ACCLIBSUFF ACCLINK ACCLLVM ACCLNK =acclnk ACCMINDEBUG ACCMULTI ACCMULTIONLY ACCPREFIX ACCPRESTDINC ACCRELOC =0 ACCREQUIRED ACCRPATH ACCTESLAONLY ACCWAIT =1 ACOPT ACTTPVAL =-tp zen2 ADDARGS ADDCUDA =0 ADDEHFRAME =1 AES =1 ALIASMODE ALLOCATABLE95 Use Fortran 95 allocatable semantics ANYCU =0 ANYCUF =0 AOPT APPENDMOD =1 APPENDTOOL Name of object file append module =append AS Name of assembler program =as ASARGS Arguments to assembler ASDIR Directory containing assembler program =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin ASMCOMMAND Internal command to process assembler file =asm ASMKEY =1 ASMONLY Compile and assemble, do not link ASMSUFFIX Suffix of assembler file =s ASMSUFFIXES Suffix allowed for assembler file =s ASNEEDED =--as-needed ASTYPE What type of object file to produce =ELF [COFF ELF AOUT] ATHLON =1 ATOMICLIB =--as-needed -lnvhpcatm -latomic --no-as-needed AUTOCOMPARE =0 AUTOINLINE AUTOLEVELS =10 AUTOMAXFUNCSIZE =400 AUTOMAXTOTALSIZE =128000 AVX =1 AVX2 =1 AVX512BITALG =0 AVX512BW =0 AVX512CD =0 AVX512DQ =0 AVX512ER =0 AVX512F AVX512IFMA =0 AVX512PF =0 AVX512VBMI =0 AVX512VBMI2 =0 AVX512VL AVX512VPOPCNTDQ =0 AVXEXTENSION BADCUDALIB =0 BASIC_SSE_DEFS =__MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ BLANKCUDALIB =0 BLTINLIBS BMI =1 BMI2 =1 BMODE =-x 123 4 BOUNDSCHECK =0 C99 =-x 123 0x80000000 C_INCLUDE_PATH_ENV C_ONLY =-x 123 0x80000000 CARGS Switches to C compiler =-x 123 0x80000000 -x 123 4 -x 119 0x20 -def __pgnu_vsn=70500 -x 70 0x40000000 -x 183 4 -x 121 0x800 -x 6 0x20000 CCNEXTCOUNT =0 CCOMPCOMMANDS =cpp1 CCOMPDIR Directory containing the C compiler =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools CEXTARGS Arguments for extracting =-x 14 0x80 CFI_DIR CG =llvm CGARGS Code Generation switches to native compiler =-x 120 0x200000 -x 70 0x40000000 -x 8 0x40000000 -x 164 0x800000 -x 85 0x2000 -x 85 0x4000 -x 34 0x40000000 -x 53 0x800000 -x 206 0x02 -x 68 0x1 -x 39 4 -x 56 0x10 -x 26 0x10 -x 26 1 -x 56 0x4000 -y 163 0xc0000000 -x 201 0xf0000000 -x 189 0x10 -y 189 0x4000000 CGMANPIN CHEADERSUFFIX =h CHECKCUDALIB =0 CLANG =clang CLANGARGS =-openmp-opt-disable CLANGCMD =clang CLANGCOMPBIN Clang directory =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/share/llvm/bin CLANGMCPU =-march=znver2 -mcpu=znver2 CLANGMODEL CLANGPIC CLANGUSERARGS CLFLUSHOPT =1 CLTPVAL =-tp zen2 CLZERO =1 COMMLIBSDIR COMMLIBSINCDIR COMMLIBSLDDIR COMMLIBSLPATHDIR COMMLIBSRPATHDIR COMPBASE =/opt/nvidia/hpc_sdk COMPBASE64 =/opt/nvidia/hpc_sdk COMPBBIN =compilers/bin COMPBIN Compiler binary directory =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin COMPBSHARE =compilers/share COMPGLIBDIR COMPGLIBLFDIR COMPILEONLY Compile, do not assemble COMPINCDIR Compiler include subdirectory =include COMPINCDIRFULL =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include COMPINCPREFIX =compilers/ COMPLIB Compiler library directory =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib COMPLIBDIR Compiler library subdirectory =lib COMPLIBLF COMPLIBLFDIR Compiler library subdirectory for large file support COMPLIBMP COMPLIBOBJ =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib COMPLIBPREFIX =compilers/ COMPLIBSO COMPLIBSTATIC COMPLIBSUBDIR =compilers/lib COMPREFIX COMPSYS =Linux_x86_64 COMPUTECAP =35 50 COMPUTECAPS =35 50 COMPVER =21.9 CONCUR Add multiprocessor thread libraries =YES CONCURCOMPILE Compiling with -Mconcur or -mp CONCURSW Add multiprocessor thread libraries =YES CONV =conv CPATH_ENV =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include CPLUS64LDARGS CPLUS_INCLUDE_PATH_ENV CPP =pgCC CPP1ARGS Switches passed to C++ phase 1 =--gnu_version=70500 -D__pgnu_vsn=70500 CPP1DEFARGS Switches passed to C++ phase 1 CPP1MANPIN CPP1ONLY C++ phase 1 only CPP2ARGS Switches passed to C++ phase 2 =-gnuvsn 70500 -x 69 0x200 -x 123 0x400 CPP2DEFARGS Switches passed to C++ phase 2 =-x 117 0x200 CPPASC CPPASCPP =C cpp cc cxx c++ CPPCOMP1 Name of the C++ compiler phase 1 module =cpp1 CPPCOMP2 Name of the C++ compiler phase 2 module =cpp2 CPPCOMPCOMMANDS C++ compile commands =nocpp CPPCOMPDIR Directory containing the C compiler =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools CPPDEPEND CPPDEPENDFILE CPPEXT Name of the C++ compiler extractor for inlining =cpp2ex CPPEXTCOMMANDS C++ extract commands =cpp1 CPPHEADERSUFFIX =H hpp hh hxx h++ CPPLDARGS CPPLIB CPPPREINC --preappend switches passed to C++ phase 1 =--preinclude _cplus_preinclude.h --preinclude_macros _cplus_macros.h CPPSTDLIBS CPPSUFFIX Suffixes to be compiled by C++ compiler =c i cpp CRTL =-lnsnvc -lnvc CSUFFIX Suffixes to be compiled by C compiler CUASCU =cu CUBLASSTDLIB =c CUCOMMANDS Commands to run for CUDA files CUDA_DRIVER_VERSION CUDA_DRIVER_VERSION_STR CUDA_DRIVERS_SUPPORTED CUDA_HOME CUDA_HOME_ENV CUDA_NOATTACH =0 CUDACUDAVERSION CUDAINC CUDALIBDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda//lib64 CUDALIBDIRNAME =lib64 CUDALIBINSTALL CUDALIBSTATIC CUDAMAJOR =Linux_x86_64/21.9/cuda CUDAMATHDIR CUDAMATHINCDIR CUDAMATHLIBDIR CUDANCCLDIR CUDANCCLINCDIR CUDANCCLLIBDIR CUDANEEDED =0 CUDANVSHMEMDIR CUDANVSHMEMINCDIR CUDANVSHMEMLIBDIR CUDAROOT CUDARPATH CUDARPATHNEEDED =0 CUDARTLIBS =cudadevrt cudart CUDARTNEEDED =0 CUDARTSTATIC CUDASITELIB CUDAVER CUDAVERSION CUDAVERSIONDEFINE CUDAVSNSUFF =10 CUDAXDY =0.0 CUDAXXYY =0 CUDAXXYY1 CUDAXXYY2 =0 CUDAXY =00 CUFSUFFIX CUDA Fortran suffixes to be compiled by f90 compiler =CUF cuf CUFX =cufx CUHEADERSUFFIX =cuh CULIBOSSTATIC CUPASCUP =cup CUPHEADERSUFFIX CUPSUFFIX Suffixes for CUDA preprocessed code to be compiled by C++ compiler =cup CURDIR =/global/u2/m/madams/petsc CURRPATH =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin CUSUFFIX Suffixes for CUDA code to be compiled by C++ compiler =cu CZCCFF =-cz DDEFACCEL DDEFNOOPENMP DDEFNOSGIMP DEBUG Debug setting DEBUG2 Debug dwarf level DEBUG2DEF Debug debug dwarf level DEBUGCPP Debug dwarf level for C++ DEBUGCPPDEF Default debug dwarf level for C++ DEBUGFLAG DEBUGFLAG_64 =0 DEBUGSET DEF901ACC DEF_GNU_SOURCE =_GNU_SOURCE DEF_PGCG_SOURCE =_PGCG_SOURCE DEFACC DEFACCDEBUG DEFACCEL =tesla host DEFACCPRESTDINC DEFACCRELOC =0 DEFAS Name of assembler program =as DEFASARGS DEFASDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin DEFASTYPE =ELF DEFAULT_COMMLIBSDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/comm_libs DEFAULT_CUDA_HOME DEFAULT_CUDAMATHDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/ DEFAULT_CUDANCCLDIR DEFAULT_CUDANVSHMEMDIR DEFAULTCAPFLAG DEFAULTCHEADERS =h DEFAULTCPPASCPP =C cpp cc cxx c++ DEFAULTCPPHEADERS =H hpp hh hxx h++ DEFAULTCUASCU =cu DEFAULTCUHEADERS =cuh DEFAULTCUPASCUP =cup DEFAULTLLVM =1 DEFBMODE =-x 123 4 DEFC99 =1 DEFCACHESIZE DEFCARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 -x 66 0x80000000 DEFCCFFVALUE =0x6CFF6 DEFCCOMPDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools DEFCEXTARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 DEFCGMANPIN DEFCLANGMCPU =-march=znver2 -mcpu=znver2 DEFCOMMON =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 DEFCOMPUTECAP =35 50 DEFCOMPUTECAPS =35 50 DEFCPP1MANPIN DEFCPPARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 DEFCPPDEFS =__PGI __NVCOMPILER _GNU_SOURCE _PGCG_SOURCE DEFCPPINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include /usr/include/c++/7 /usr/include/c++/7/x86_64-suse-linux /usr/include/c++/7/backward /usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/x86_64-suse-linux/include /usr/include DEFCPPLDARGS DEFCPPLIB DEFCPPLIBS =-latomic -lnvhpcatm -lstdc++ DEFCPPSTDLIBS DEFCUDARPATH DEFCUDAVERSION =11.4 DEFDEFACCRELOC =0 DEFDEFDEF4ACCRELOC =0 DEFDEFDEFACCRELOC =0 DEFDEFS =unix __unix __unix__ linux __linux __linux__ __NO_MATH_INLINES __LP64__ __x86_64 __x86_64__ __LONG_MAX__=9223372036854775807L __SIZE_TYPE__=unsigned long int __PTRDIFF_TYPE__=long int __amd64 __amd64__ __k8 __k8__ __MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ __SSE4_1__ __SSE4_2__ __AVX__ __AVX2__ __F16C__ __FMA__ __XSAVE__ __XSAVEOPT__ __XSAVEC__ __XSAVES__ __POPCNT__ __SHA__ __AES__ __PCLMUL__ __CLFLUSHOPT__ __FSGSBASE__ __RDRND__ __BMI__ __BMI2__ __MWAITX__ __CLZERO__ DEFDEFUNSIGNED =NO DEFF901ARGS =-nostatic -x 19 0x400000 -quad -x 59 4 -x 15 2 -x 49 0x400004 -x 51 0x20 -x 57 0x4c -x 58 0x10000 -x 124 0x1000 -tp zen2 -x 57 0xfb0000 -x 58 0x78031040 -x 47 0x08 DEFF901MANPIN DEFF902ARGS =-x 51 0x20 -x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 -x 124 0x1400 -y 15 2 -x 57 0x3b0000 -x 58 0x48000000 DEFF902COMMON =-x 51 0x20 -x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 -x 124 0x1400 -y 15 2 DEFF90COMMON =-x 19 0x400000 -quad -x 59 4 -x 15 2 -x 49 0x400004 -x 51 0x20 -x 57 0x4c -x 58 0x10000 -x 124 0x1000 DEFF90EXTARGS =-x 124 0x1400 -x 51 0x20 -nostatic DEFFARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 -x 51 0x20 -x 124 0x1401 DEFFEXTARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 -x 51 0x20 -x 124 0x1401 DEFFLUSHVAL DEFGNU =--gnu_version=70500 -D__pgnu_vsn=70500 DEFGNU2 =-gnuvsn 70500 DEFGNUC =-def __pgnu_vsn=70500 DEFHOST =host DEFIPAEXPORTVAL DEFKEEPOBJ Default keep object file behavior DEFKEEPPREPRO Keep preprocessor file DEFLCUDAFOR2LIB DEFLCUDAFORLIB DEFLCUDALIB DEFLD Name of loader =ld DEFLDARGS Default linker args =-m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld DEFLDDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin DEFLDENDUP =/usr/lib64/gcc/x86_64-suse-linux/7/crtend.o /usr/lib64/crtn.o DEFLDSTARTUP =/usr/lib64/crt1.o /usr/lib64/crti.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o --eh-frame-hdr DEFLIBDIR =/usr/lib64 DEFLINKFILES DEFLINKOUT Default output of link step DEFLLCFASTISEL =-fast-isel=0 DEFLLCMCPU =-mcpu=native DEFLLVMMCMCPU =-mcpu=znver2 DEFLLVMOPTMCPU =-mcpu=native DEFMANMCUDALIB DEFMULTIONLY DEFMUNCHLDSTARTUP =/usr/lib64/crt1.o /usr/lib64/crti.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o --eh-frame-hdr DEFMVDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin DEFNOOPENMP DEFNOSGIMP DEFPRED =-predicate #machine(x86_64) #lint(off) #system(posix) #cpu(x86_64) DEFPREPRO Name of preprocessor program =nvprepro DEFSTDDIRS =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib /usr/lib64 /usr/lib64/gcc/x86_64-suse-linux/7 DEFSTDINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include /usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/include /usr/include DEFSTDLIBS =-lnvomp -ldl --as-needed -lnvhpcatm -latomic --no-as-needed -lpthread --start-group -lnvcpumath-avx2 -lnsnvc -lnvc --end-group -lm -lgcc -lc -lgcc -lgcc_s DEFSTDOBJDIR =/usr/lib64 DEFSTDPARCOMPUTECAP DEFSTDPATHS =-rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -rpath /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 DEFTESLAONLY =1 DEFTPVAL DEFUNSIGNED Default char is unsigned DEFUSESSELIBS =1 DETECTCUDA =0 DETECTCUDAVERSION DETECTEDCAPS DEVDEBUG =0 DIALECTARGS Switches passed to C++ phase 1 DLLIB =-ldl DOACCLINK =0 DODWARF =1 DOFPIC DRIVER =C++ DRIVERCOMMAND =nvc++ DRIVERDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin DRIVERHOST =login18 DRIVERLANG =CPP DRIVERNAME =nvc++ DRYRUN Display but do not execute each command =0 DRYSTDINC Display standard include directories and exit dummy DYNAMICLINK This is set when creating a shared object or dynamic library =0 ECHONAME Echo file names as they are compiled =1 EDG_INCLUDES =-I- -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include --sys_include /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include --sys_include /usr/include/c++/7 --sys_include /usr/include/c++/7/x86_64-suse-linux --sys_include /usr/include/c++/7/backward --sys_include /usr/lib64/gcc/x86_64-suse-linux/7/include --sys_include /usr/local/include --sys_include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed --sys_include /usr/x86_64-suse-linux/include --sys_include /usr/include EHFRAME =--eh-frame-hdr EMPTY ENABLENVVM70COMPILERFLAG =-x 187 0x40000 ENABLENVVM70GPUCODEGENERATIONFLAG =-x 187 0x8000000 ENDGROUP ENVCUDAVERSION ENVSYSINC ENVUSRINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include EXE EXPLICITFORM Form is explicitly provided EXTENSION =__extension__= EXTRAACCLNK EXTRACOMPLIBDIR EXTRACT EXTRACTINLINE EXTRACTLIB EXTRACTLIBDEF =Extract.dir EXTRACTLIBSET EXTRACTLIBVAL EXTRACTONLY EXTRACTTOC EXTRACUDAFORLIB EXTRAINIT F16C =1 F901 Name of the Fortran phase 1 module =fort1 F901ARGS Switches passed to F90 compiler =-vect 48 -x 54 1 -x 68 0x1 -x 70 0x40000000 -x 70 0x40000000 -x 68 0x1 -y 163 0xc0000000 -x 201 0xf0000000 -x 189 0x10 F901DEFARGS More switches passed to F90 compiler =-x 54 1 F901MANPIN F902 Name of the Fortran phase 2 module =fort2 F902ARGS Switches passed to F90 back end =-x 68 0x1 -x 8 0x40000000 -x 70 0x40000000 -x 56 0x10 F90E =f901 F90EXT Name of the Fortran extractor for inlining =fort2ex F90SUFFIX Suffixes to be compiled by f90 compiler =F90 f90 F f F90X =f90x FACTORIZE =0x2 FARGS Switches to Fortran compiler FBADCUDALIB FBLANKCUDALIB =0 FCGARGS Switches passed to F90 compiler back end =-x 183 4 -x 121 0x800 FCOMPCOMMANDS Fortran compile commands =f90x cufx f902 FEXTCOMMANDS Fortran extract commands =f901ext FFEARGS Switches to Fortran Front End file files FIPACGARGS FIPAVAL =-x 89 0x80800842 -x 66 0x20000 -y 89 0x40 FIPAVALUE FLAGREPLACEMENTTABLE FLANG1 Name of the Fortran phase 1 module =flang1 FLANG1ARGS Switches passed to nvflang compiler FLUSHVAL FMA =1 FMA4 FNEEDCUDA =0 FORCEDBGLLVM =0 FORCELILLVM =0 FORCELLVM =1 FORTRANMPI =fmpich FPCONTRACT =--fp-contract=on FPIC FSGSBASE =1 FTNRTL Name of f77 runtime library FULL_SSE_DEFS =__MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ __SSE4_1__ __SSE4_2__ __AVX__ __AVX2__ __F16C__ __FMA__ __XSAVE__ __XSAVEOPT__ __XSAVEC__ __XSAVES__ __POPCNT__ __SHA__ __AES__ __PCLMUL__ __CLFLUSHOPT__ __FSGSBASE__ __RDRND__ __BMI__ __BMI2__ __MWAITX__ __CLZERO__ FXSR G77DIR =/usr/lib64/gcc/x86_64-suse-linux/7/ G77LIBDIR G77LIBLIB GBASE GCCDIR =/usr/lib64/gcc/x86_64-suse-linux/7 GCCINC =/usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/include /usr/include GCCLIBS =-L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 GCCRPATH =-rpath /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 GCCVERSION =70500 GENCCFF =0 GENPREPROCESS =cpreprocess GFNI =0 GGPUFILE =0 GNUATOMIC =-latomic GPPDIR =/usr/include/c++/7 /usr/include/c++/7/x86_64-suse-linux /usr/include/c++/7/backward /usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/x86_64-suse-linux/include /usr/include GPU =0 GPU_FASTMATH =0 GPU_MATH_UNIFORM =0 GPUNKW =1 GSYS GSYSFLAG =-tp zen-64 HANDLEOTHER =copyother HASMSMPIFLIBNAME =0 HASMSMPIFLIBNAME32 =0 HASMSMPIFLIBNAME64 =0 HCOMPDIR Directory containing the F90 front ends =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools helpvalues HOSTCPP1ARGS =--llalign HOSTOBJSUFFIX Suffix for object files =o HUGELIB HUGEN HXRT_DEV =-lhxrt_dev I8STORAGE Indicates whether to include f90i8st.o object IEEE IEEE conformance IGNORE_PREINCLUDES IGNORECUDALIB ILDIR ILPALIGN IMPLICITSECTIONS =1 IMPORT =import IMPSW Linker switch for import libraries =-defaultlib: INFORM What level of informative messages =-inform warn INFOTPVAL =-tp zen-64 INITARGS INLINE INLINEARGLIB Inlining arguments to compiler/extractor INLINEARGS Inlining arguments to compiler/extractor INLINECARGS Inlining arguments to compiler INLINELIST Inlining arguments to compiler/extractor INLINESIZE input INTEL =0 INTRINLEVEL =4 IPA14 =0x104 IPA14r IPA66 =0x20000 IPA89 =0x80800842 IPAADD Collected command line switches that should added on the recompile IPAADDINLINE IPAADDSW Command line switches that should added on the recompile IPAC2ARGS IPA arguments passed to the f90 compiler back end IPACARGS IPA arguments passed to the compiler IPACGARGS IPADIR Directory containing IPA tools =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools IPAEXPORT IPAEXPORTVAL IPAIGNORE0 Command line switches that should not be passed on the recompile =-c -Mkeepasm -Mpreprocess IPAIGNORE1 Command line switches that should not be passed on the recompile =-Mextract -Wi -Minline IPAIGNORE2 Command line switches that should not be passed on the recompile =-L -I -l -o IPAINLINE IPAINLINELIST IPALD =ipa IPALIBCSW =--Mipainlinelibc IPALINK Run IPA linker phase 1 IPALINKENABLE IPANOARG IPARECOMPILE IPARGS Arguments to IPA linker IPAVAL =-x 89 0x80800842 -x 66 0x20000 -x 14 0x104 -y 89 0x40 IPAVALUE IPAVERBOSITY =1 IPNOP Arguments to IPA linker =-nop IPOFILE IS_CPLUS =1 ISACCLIBNEEDED =0 ISANYAVX =-avx2 ISCOMPFORGPU =0 ISCUDALIB ISCUDARTNEEDED =0 ISMCUDALIB ISSTATIC =0 ISTPHOST =0 KEEPASM Keeps the assembler file KEEPBC Keep byte-code file KEEPCCFF =-keep KEEPCCI Keeps the intermediate call context information file KEEPIL Keeps the intermediate C++ .il and F90 .ilm files KEEPLL Keeps the intermediate llvm assembly description file KEEPLLVM Keeps llvm file after the optimization KEEPOBJ Keep object file KEEPPREPRO Keep preprocessor file KEEPTEMP Keep temporary files KNL LC =-lgcc -lc -lgcc -lgcc_s LCRT1 =/usr/lib64/crt1.o LCRTB =/usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o LCRTBDEF =/usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o LCRTE =/usr/lib64/gcc/x86_64-suse-linux/7/crtend.o LCRTI =/usr/lib64/crti.o LCRTN =/usr/lib64/crtn.o LCUDAFOR2LIB LCUDAFORLIB LCUDALIB LD Name of loader =ld LDARGS Loader arguments LDDIR Directory containing loader =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin LDINPUTPOST LDINPUTPRE LDLIBARGS Loader arguments LDLIBS Loader libraries LDLIBSLIST LDSHARED LDSO =/lib64/ld-linux-x86-64.so.2 LDSWITCHES Loader switches LEVENTI LFC =-lgfortran LIBCULIBOS LIBDIR Standard linker library directory =/usr/lib64 LIBMEMIL =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/libmem.il LIBNCURSES =YES LIBRARY_PATH LIBRARY_PATH_ENV LIBSSW Linker switch for system libraries =-l LIBSUFFIX Suffix for library files =a so LIBSW Linker switch for libraries =-l LIBSW_NOLIB Linker switch for libraries with names that don't begin with lib =-l LINITACC LINITMP LINKNOBJSUFFIX Non-object suffixes to be passed to linker =a lo la LINKOBJSUFFIX Object suffixes to be passed to linker =o LINKSUFFIX Suffixes to be passed to linker =o a lo la LINUXCOMMON =-quad LLC =llc LLCARCH =-march=x86-64 LLCARGS =-non-global-value-max-name-size=4294967295 -x86-cmov-converter=0 LLCCMD =llc LLCDO LLCDONE LLCFASTISEL =-fast-isel=0 LLCFLOATABI LLCFRAMEPOINTER =--frame-pointer=none LLCISEL LLCMATTR LLCMCPU =-mcpu=znver2 LLCMODEL LLCOPT LLCOPTMAX =3 LLCPIC LLCSUFFIX =ll llvm LLCTARGET100ARGS =-x86-cmov-converter=0 LLCTARGET110ARGS =-x86-cmov-converter=0 LLCTARGET50ARGS =-x86-cmov-converter=0 LLCTARGET60ARGS =-x86-cmov-converter=0 LLCTARGET70ARGS =-x86-cmov-converter=0 LLCTARGET80ARGS =-x86-cmov-converter=0 LLCTARGET90ARGS =-x86-cmov-converter=0 LLCX86CMOV =0 LLFASTMATH =0 LLNASM =Nasm LLONLY LLOPT =opt LLOPTSUFFIX =ll llvm LLUNSAFEMATH =--enable-unsafe-fp-math --enable-no-nans-fp-math --enable-no-infs-fp-math --enable-no-signed-zeros-fp-math LLVMARGS LLVMASMONLY Keeps llvm file after the optimization LLVMCOMPBIN LLVM Utils directory =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/share/llvm/bin LLVMDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/share/llvm LLVMDO LLVMFAST =0x01 LLVMFLAGS =-x 189 0x10 LLVMFMA =0 LLVMLLCLEVEL =1 LLVMLLCLEVELOVERRIDE LLVMMC =llvm-mc LLVMMCARCH =-arch=x86-64 LLVMMCARGS LLVMMCATTR LLVMMCMCPU =-mcpu=znver2 LLVMOPT Go through LLVM opt tool LLVMOPT2PASS =NO LLVMOPTARGS =-O2 -openmp-opt-disable LLVMOPTARGS1 =-tbaa -targetlibinfo -basicaa -domtree -verify -simplifycfg -domtree -sroa -early-cse -lower-expect LLVMOPTARGS2 =-targetlibinfo -tbaa -basicaa -domtree -verify -globalopt -ipsccp -deadargelim -instcombine -simplifycfg -basiccg -prune-eh -inline -functionattrs -argpromotion -sroa -domtree -early-cse -lazy-value-info -jump-threading -correlated-propagation -simplifycfg -instcombine -tailcallelim -simplifycfg -reassociate -domtree -loops -loop-simplify -lcssa -loop-rotate -licm -lcssa -loop-unswitch -instcombine -scalar-evolution -loop-simplify -lcssa -indvars -loop-idiom -loop-deletion -loop-unroll -memdep -gvn -memdep -memcpyopt -sccp -instcombine -lazy-value-info -jump-threading -correlated-propagation -domtree -memdep -dse -adce -simplifycfg -instcombine -strip-dead-prototypes -globaldce -constmerge -globalopt -ipsccp -deadargelim -instcombine -simplifycfg -basiccg -prune-eh -inline -functionattrs -sroa -domtree -early-cse -lazy-value-info -jump-threading -correlated-propagation -simplifycfg -instcombine -tailcallelim -simplifycfg -reassociate -domtree -loops -loop-simplify -lcssa -loop-rotate -licm -lcssa -loop-unswitch -instcombine -scalar-evolution -loop-simplify -lcssa -indvars -loop-idiom -loop-deletion -loop-unroll -memdep -gvn -memdep -memcpyopt -sccp -instcombine -lazy-value-info -jump-threading -correlated-propagation -domtree -memdep -dse -adce -simplifycfg -instcombine -strip-dead-prototypes -globaldce -constmerge -domtree -verify LLVMOPTCMD =llvmopt LLVMOPTLEVEL =2 LLVMOPTLEVELOVERRIDE LLVMOPTMCPU =-mcpu=znver2 LLVMOPTOLDVECTARG LLVMOPTSKIPNATIVE =0 LLVMOPTUSERARGS LLVMOPTVECTARG LLVMVECT =YES LLVMVERFLAGS =-x 249 110 LLVMVERINT =110 LLVMVERSION =11.0 LM =-lm LMP =-lnvomp -ldl --as-needed -lnvhpcatm -latomic --no-as-needed -lpthread LMP_ONLYMP =-lnvhpckomp LMPILIB LMPIPROFLIB LNGACC =0 LNGOMP =0 LNGSPA =0 LNSPGC =-lnsnvc LOCALBINDLIB LOCALBINDPATHS LOCALCOMPLIB Local compiler library directory LOCALCOMPLIBLF LOCALDEFS LOCALRC =YES LOCSCRIPT Flag whether to include the linker script for shared objects =0 LPROFO LRTLIB LRTLIBNAME =-lrt -lpthread LSCALAPACK LTHREAD =-lpthread LTRACE =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o LWP =0 LZCNT =0 MAJOR Major release version =2021 MALIGN MANAGED =0 MANINIT =0 MANMCUDALIB MANPREFER MATHCUDALIB MATHCUDALIBLIST MAXFUNCSIZE =600 MAXTOTALSIZE =25000 MAYNEEDMANAGEDMEMORY =0 MCUDAASNEEDED MCUDAASNONEEDED MCUDALIB MEDIUM MKL_LOCATION MMX =1 MOVDIR64B =0 MOVDIRI =0 MPDEFCPP MPDEFCPPDEF MPFAIR MPFAIRDEF MPGPULINK Set if compiling OpenMP for GPU =0 MPI_EXTRAFTNOBJ MPIBASEDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich MPIBASELIB =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/lib MPIINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/include MPILIB =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/lib MPILIBDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/lib MPILIBDIRNAME =lib MPILIBINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/include MPILIBNAME =mpich MPILIBVER MPIMSINC MPIMSLIB MPIMSLIBNAME =msmpi MPISGIDIR =/opt/sgi/mpt/mpt-2.06 MPISGIINC =/opt/sgi/mpt/mpt-2.06/include MPISGILIB =/opt/sgi/mpt/mpt-2.06/lib MPISGIROOT MPITYPE =MPICH MPIUDIR MPSET MPSETCPP MPSETDEF MPSETDEFCPP MPX =0 MRTL =-lnvcpumath-avx2 MSGTPVAL =-tp zen-64 MSLINK MSMPI_INC MSMPI_LIB32 MSMPI_LIB64 MSMPIDIR MSMPIFLIBNAME =msmpifec MSMPIINC MSMPILIB32 MSMPILIB64 MULTICORETRACE =1 MUSTRESTART =0 MVECT Collected set of -Mvect options MWAITX =1 MYLOCALRC NEEDACCLIB =0 NEEDCUBLAS =0 NEEDCUDA100 NEEDCUDA110 NEEDCUDA111 NEEDCUDA80 NEEDCUDA90 NEEDCUDAALL =0 NEEDCUDACOMMPATHS =0 NEEDCUDACUBLAS =0 NEEDCUDACUFFT =0 NEEDCUDACUFFTW =0 NEEDCUDACURAND =0 NEEDCUDACUSOLVER =0 NEEDCUDACUSPARSE =0 NEEDCUDACUTENSOR =0 NEEDCUDAMATHPATHS =0 NEEDCUDANCCL =0 NEEDCUDANVBLAS =0 NEEDCUDANVLAMATH =0 NEEDCUDANVSHMEM =0 NEEDCUFFT =0 NEEDCUFFTCALLBACK =0 NEEDCUFFTW =0 NEEDCURAND =0 NEEDCUSOLVER =0 NEEDCUSPARSE =0 NEEDCUTENSOR =0 NEEDIMPLICITMANAGED =1 NEEDLOCSCRIPT Flag whether to include the linker script for shared objects =0 NEEDMANAGEDMEMORY =0 NEEDMCUDALIB =or(0,0,0,0,0,0,0,0,0,0) NEEDNCCL =0 NEEDNVBLAS =0 NEEDNVHPCLDSYMS =0 NEEDNVLAMATH =0 NEEDNVSHMEM =0 NEEDOMPAUTOOFFLOAD =0 NEEDOMPOFFLOAD =0 NEEDOMPT =0 NEWPP1 =--preinclude _cplus_preinclude.h --preinclude_macros _cplus_macros.h NEWPP2 NKEEP =0 NO_3DNOW =0 NO_3DNOWA =0 NO_ABM =0 NO_AES =0 NO_AVX =0 NO_AVX2 =0 NO_AVX512BITALG =0 NO_AVX512BW =0 NO_AVX512CD =0 NO_AVX512DQ =0 NO_AVX512ER =0 NO_AVX512F =0 NO_AVX512IFMA =0 NO_AVX512PF =0 NO_AVX512VBMI =0 NO_AVX512VBMI2 =0 NO_AVX512VL =0 NO_AVX512VPOPCNTDQ =0 NO_BMI =0 NO_BMI2 =0 NO_CLFLUSHOPT =0 NO_CLZERO =0 NO_F16C =0 NO_FMA =0 NO_FMA4 =0 NO_FSGSBASE =0 NO_FXSR =0 NO_GFNI =0 NO_LWP =0 NO_LZCNT =0 NO_MMX =0 NO_MOVDIR64B =0 NO_MOVDIRI =0 NO_MPX =0 NO_MWAITX =0 NO_PCLMUL =0 NO_PKU =0 NO_POPCNT =0 NO_PREFETCHWT1 =0 NO_RDRND =0 NO_RTM =0 NO_SHA =0 NO_SSE =0 NO_SSE2 =0 NO_SSE3 =0 NO_SSE41 =0 NO_SSE42 =0 NO_SSE4A =0 NO_SSSE3 =0 NO_TBM =0 NO_TP_OR_TP_HOST =0 NO_VAES =0 NO_VPCLMULQDQ =0 NO_XOP =0 NO_XSAVE =0 NO_XSAVEC =0 NO_XSAVEOPT =0 NO_XSAVES =0 NOASM Indicates whether to generate asm file NOASNEEDED =--no-as-needed NOBOUNDSCHECK =0 NOFRAME Indicates whether -Mnoframe is selected =YES NOILM Indicates whether to generate .ilm file NOINSTRFILELIST File exclude list for Minstrument. Looks for given path as substring of full path NOINSTRFUNCS Function exclude list for Minstrument. Looks for given string as substring of function name NOLLALIGN NOOPENMP NOPGIRPATH NORDC =0 NORPATH NOSGIMP NOSIMD256 NOSIMD512 =zen-64 NOSTARTUP Indicates whether to exclude standard startup object files NOSTATIC =0 NOSTDCPPLIBS Indicates whether to exclude standard C++ language libraries =0 NOSTDFTNLIBS Indicates whether to exclude standard Fortran language libraries NOSTDLIBDIRS Indicates whether to exclude standard library directories NOSTDLIBPATHS Indicates whether to exclude standard library directories from rpath NOSTDLIBS Indicates whether to exclude standard libraries NOSTDPAR =0 NOWARN Suppress warning messages NVBE =nvbe NVCCHOST =0 NVCOMPILER =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9 NVCOMPILER_COMM_LIBS_HOME =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/comm_libs/ NVCOMPILER_CUDA_HOME NVCOMPILER_MATH_LIBS_HOME =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/ NVCOMPILER_NCCL_HOME NVCOMPILER_SHMEM_HOME NVDD =nvdd NVF_X86AVX =-avx2 NVHPCLDSYMS =--dynamic-list=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.syms NVHPCLDSYMSPATH =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.syms NVILINKARGS NVINCDIRENV NVLAMATH_SFX = NVLIBC_DEV =-lnvlibc_dev NVLIBSDIRENV NVLIBSENV NVOMP_DEV =-lnvomp_dev NVOMP_DEV_CUDAXY NVOMPLIB =-lnvomp NVOMPLIBS =-lnvomp -ldl NVOPTLINCDIR NVOPTLLIBS NVOPTLLIBSDIR NVVM70FLAGS =-x 187 0x40000 -x 187 0x8000000 NVVM70ISDEFAULT OBJDIR default directory in which to keep object files OBJSUFFIX Suffix for object files =o OBJSUFFIXES Suffixes for object files =o OEM_INFO =64-bit target on x86-64 Linux -tp zen-64 OFEDLIBDIR =environment(OFEDLIBDIR) OLDESTCUDASHIPPED =10.2 OLDSTDINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include OMPATMFLAGS OMPAUTOOFFLOADSUFFIX OMPAUX =-Bdynamic -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -lnvmalloc OMPCOMPUTECAPS OMPDEVLIB OMPINIT =0 OMPINITOBJ OMPINTEROPEND =-lnvomp OMPINTEROPSTART OMPLIB =-lnvomp -ldl OMPLIBDEBUG OMPLIBDEVDEBUG OMPLINKFILE OMPPRESTDINC OMPTSUFFIX OPT110ARGS =-openmp-opt-disable OPTARGS =-openmp-opt-disable OPTCARGS OPTCGARGS OPTF901ARGS OPTLEVEL Compiler optimization level =1 OPTLEVELDEF Default optimization level without -O =1 OPTLEVELINITDEF Initial default optimization level without -O =1 OPTLEVELINITDEF1 Initial default optimization level without -O =1 OPTLEVELMAX Maximum legal opt level =4 OPTLEVELMIN Minimum legal opt level =0 OTHERPREPROCESS =cpreprocess OUTFILE Output file name OVERRIDECPPDEPENDFILE OVERRIDESUFFIX PADDFLAG =-x 186 0x80 PAPIDIR Directory containing libpapi.a =/usr/local/lib PASSPIE =0 PATH =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin PCLMUL =1 PERS =nvi PERSONALITY library that resolves gxx_personality_v0 for the -Mcuda link PFX =nv PFY =nvhpc PGATM =-lnvhpcatm PGF90LIB Name of f90 runtime libraries =-lnvf PGI_CUDA_HOME PGILD =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld PGISTATIC PGISTATICX PGIUNSTATIC PGIUNSTATICX PGLEN =64 PGLLVMTARGET =yes PGLLVMVFP PGSYS =lin86 PININIT =0 PKU =0 PNM =nvnm POPCNT =1 POSTOPTIONS Default options to follow command line PREFETCHWT1 =0 PREINCLUDE PREOPTIONS Default options to preceed command line PREPRO Name of preprocessor program =nvprepro PREPROARGS Arguments to preprocessor program PREPROCONLY Stop after preprocessor PREPRODIR Directory containing preprocessor program =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin PREPROSUFFIX Suffix of preprocessor file =i PRINTRESTARTCMD =0 PROFFLAG PROFILE Use profile startup and libraries PROFILESW Use profile startup and libraries RDRND =1 READCUDAVERSION READVERSIONTXT realfiles RECIPDIV =0 REPLACESWITCHES =0 REQCUDAVERSION RESTARTENV RESTARTNAME RMARGS RTM =0 RW SAVSTDLIB SCALARSSE SETCAPS =0 SHA =1 SIMD256 =0 SIMD512 =0 SITEASMPPSUFFIX SITEASMSUFFIX SITECPPSUFFIX SITECSUFFIX SITECUFPPSUFFIX SITECUFSUFFIX SITECUSUFFIX SITEDEF SITEF77PPSUFFIX SITEF77SUFFIX SITEF90PPSUFFIX SITEF90SUFFIX SITEINC SITELIB SITELIBSUFFIX SITEOBJSUFFIX SITERPATH SITERPATHS SMALLSIZE =5 SPACOMPUTECAPS SRCFILES List of source files SRCSUFFIX Source file suffixes =c i cpp asm cu f f90 F F90 cuf CUF SSE =1 SSE2 =1 SSE3 =1 SSE41 =1 SSE42 =1 SSE4A =1 SSEDEFS =__MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ __SSE4_1__ __SSE4_2__ __AVX__ __AVX2__ __F16C__ __FMA__ __XSAVE__ __XSAVEOPT__ __XSAVEC__ __XSAVES__ __POPCNT__ __SHA__ __AES__ __PCLMUL__ __CLFLUSHOPT__ __FSGSBASE__ __RDRND__ __BMI__ __BMI2__ __MWAITX__ __CLZERO__ SSSE3 =1 STARTGROUP STATICLIB =0 STATICSTR status =0 STDDEF =unix __unix __unix__ linux __linux __linux__ __NO_MATH_INLINES __LP64__ __x86_64 __x86_64__ __LONG_MAX__=9223372036854775807L __SIZE_TYPE__=unsigned long int __PTRDIFF_TYPE__=long int __amd64 __amd64__ __k8 __k8__ __MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ __SSE4_1__ __SSE4_2__ __AVX__ __AVX2__ __F16C__ __FMA__ __XSAVE__ __XSAVEOPT__ __XSAVEC__ __XSAVES__ __POPCNT__ __SHA__ __AES__ __PCLMUL__ __CLFLUSHOPT__ __FSGSBASE__ __RDRND__ __BMI__ __BMI2__ __MWAITX__ __CLZERO__ STDINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include /usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/include /usr/include STDOBJDIR Directory containing standard startup object files =/usr/lib64 STDPARDEFS STDPARGPU =0 STDPARMC =0 STDPARMCXX =0 STDPRED =-predicate #machine(x86_64) #lint(off) #system(posix) #cpu(x86_64) STDRPATH =-rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib STDRPATHLF STDRPATHMP STDRPATHSO STRICTBMODE =-x 123 4 STRIP =strip switches =-tp=zen2 -show SYS64 =linux86-64-llvm SYSACCELS =tesla SYSACCLIBS SYSACCOBJS SYSCAP =35 50 60 61 70 75 80 86 SYSTEMINC =/usr/include/c++/7 /usr/include/c++/7/x86_64-suse-linux /usr/include/c++/7/backward /usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/x86_64-suse-linux/include /usr/include SYSV_PROF Is System V profiling used TA =0 TACPU =0 TAGPU =0 TARGET Target system =linux86-64 TARGETARCH =64 TARGETCOMMON =-x 70 0x8000 -x 122 1 -x 125 0x20000 TBM =0 TGLACC =0 TGLACCCPU =0 TGLACCGPU =0 TGLACCSEQ =0 TGLOMP =0 TGLOMPCPU =0 TGLOMPGPU =0 TGLSPA =0 TGLSPACPU =0 TGLSPAGPU =0 TGT =0 TGTACC =5 TGTACCCPU =0 TGTACCGPU =0 TGTACCSEQ =0 TGTALL =0x7 TGTCPU =0x2 TGTCUDA =0 TGTCUDAX =0 TGTGPU =0x1 TGTMCUDA =0 TGTNKW =1 TGTOMP =0x2 TGTOMPCPU =0 TGTOMPGPU =0 TGTSEQ =0x4 TGTSPA =0x1 TGTSPACPU =0 TGTSPACXX =0 TGTSPAFTN =0 TGTSPAGPU =0 TIMEINIT =0 TIMER TIMPORT =import TNVVM =nvvmd TOOLKITFLAG TPVAL =-tp zen2 TRACEBACK =OFF [ON OFF] TRACEBACKSW =OFF [ON OFF] UNSUPPORTED_NVCC_TARGET_OPTIONS =0 USECUDAROOT =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/ USEFLANG1 Substituting flang1 to fort1 USELLVMAS Using either the LLVM integrated assembler or llvm-mc =0 USENVOMPDEVSTATICLIB =0 USENVOMPNVCCBITCODE =1 USENVVM70 =0 USEOTHEROMPLIB =0 USEPGICUDA =0 USER_SET_CUDA USER_SET_CUDA_HOME =0 USERASMPPSUFFIX USERASMSUFFIX USERCPPSUFFIX USERCSUFFIX USERCUFPPSUFFIX USERCUFSUFFIX USERCUSUFFIX USERF77PPSUFFIX USERF77SUFFIX USERF90PPSUFFIX USERF90SUFFIX USERLIBSUFFIX USEROBJSUFFIX USESSELIBS =1 USETPVAL =-tp zen2 USRDDEF =-D__PGLLVM__ -D__NVCOMPILER_LLVM__ -D__extension__= USRDEFDEF =-def __PGLLVM__ -def __NVCOMPILER_LLVM__ -def __extension__= USRFTNRTL Additional fortran runtime libraries USRINC USRPOSTSTDINC USRQUOTEINC USRRPATH USRSTDINC VAES =0 VECT Vector optimization level =48 VECTSSE VERBOSE Display each command as it is executed VERSION Display version of driver and tools VERSIONJSON VERSIONTXT VERYVERBOSE VLV =0 VPCLMULQDQ =0 WINCONV =nvdd WRSTR =-x 119 0x20 X86_64 =1 X86_64TARGET =YES XOP =0 XSAVE =1 XSAVEC =1 XSAVEOPT =1 XSAVES =1 ZCDEF =-x 117 0x200 ZCLIBS =-lnvhpcatm ZEROINIT =0 ZNVER2 Known Phases: printcudaversion phase: Extract subprograms to an extract library for later inlining: C++ Phase 1 Fortran Compiler phase 1 Preprocess files: Preprocess any file Compile or Assemble source files: C++ Phase 1 f90x cufx Fortran Compiler phase 2 LLVM assembler Assembler Preprocess assembler files IPA Linker: IPA Propagation Link object files to executable: Linker Trying Cxx compiler flag -PIC for PIC code Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -PIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: nvc++-Error-Unknown switch: -PIC Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -PIC nvc++-Error-Unknown switch: -PIC PETSc Error: No output file produced Rejecting compiler flag -PIC due to nonzero status from link Rejected Cxx compiler flag -PIC because shared linker cannot handle it Trying Cxx compiler flag -qPIC for PIC code Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -qPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: nvc++-Error-Unknown switch: -qPIC Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -qPIC nvc++-Error-Unknown switch: -qPIC PETSc Error: No output file produced Rejecting compiler flag -qPIC due to nonzero status from link Rejected Cxx compiler flag -qPIC because shared linker cannot handle it Trying Cxx compiler flag -KPIC for PIC code Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -KPIC Added Cxx compiler flag -KPIC ===== Checking linker Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/libconftest.so -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Accepted Cxx compiler flag -KPIC for PIC code Executing: ftn --help | head -n 20 stdout: Usage: ftn [options] file... Options: -[no-]add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options and new dtags are disabled. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]add-rpath-shared Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in specific versions of libraries at runtime for generated shared libraries. (Off by default.) -[no-]add-runpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options and new dtags are enabled. Executing: ftn -qversion Executing: ftn -show stdout: Known Variables: _3DNOW =0 _3DNOWA =0 ABM =1 ACC901FLAGS ACCAUTOPAR =1 ACCBUILDLIB ACCCACHE ACCCGDEF =-y 163 0xc0000000 -x 201 0xf0000000 ACCCGFLAGS ACCDEBUG ACCDEF ACCDEFDEF ACCDEFINES ACCELFLAG ACCELFLAG1 ACCELS ACCEXTRACTLIB ACCEXTRACTLIBSET ACCEXTRACTLIBSW ACCEXTRACTTOC ACCFEFLAGS ACCFLAGS ACCGPULINK Set if compiling OpenACC for GPU =0 ACCLIB ACCLIB2 ACCLIBSUFF ACCLINK ACCLLVM ACCLNK =acclnk ACCMINDEBUG ACCMULTI ACCMULTIONLY ACCPREFIX ACCPRESTDINC ACCRELOC =0 ACCREQUIRED ACCRPATH ACCTESLAONLY ACCWAIT =1 ACOPT ACTTPVAL =-tp zen2 ADDARGS ADDCUDA =0 ADDEHFRAME =1 AES =1 ALIASMODE ALLOCATABLE95 Use Fortran 95 allocatable semantics ANYCU =0 ANYCUF =0 AOPT APPENDMOD =1 APPENDTOOL Name of object file append module =append AS Name of assembler program =as ASARGS Arguments to assembler ASDIR Directory containing assembler program =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin ASMCOMMAND Internal command to process assembler file =asm ASMKEY =1 ASMONLY Compile and assemble, do not link ASMSUFFIX Suffix of assembler file =s ASMSUFFIXES Suffix allowed for assembler file =s ASNEEDED =--as-needed ASTYPE What type of object file to produce =ELF [COFF ELF AOUT] ATHLON =1 ATOMICLIB =--as-needed -lnvhpcatm -latomic --no-as-needed AUTOCOMPARE =0 AUTOINLINE AUTOLEVELS =10 AUTOMAXFUNCSIZE =400 AUTOMAXTOTALSIZE =128000 AVX =1 AVX2 =1 AVX512BITALG =0 AVX512BW =0 AVX512CD =0 AVX512DQ =0 AVX512ER =0 AVX512F AVX512IFMA =0 AVX512PF =0 AVX512VBMI =0 AVX512VBMI2 =0 AVX512VL AVX512VPOPCNTDQ =0 AVXEXTENSION BADCUDALIB =0 BASIC_SSE_DEFS =__MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ BLANKCUDALIB =0 BLTINLIBS BMI =1 BMI2 =1 BMODE =-x 123 4 BOUNDSCHECK =0 C99 =-x 123 0x80000000 C_INCLUDE_PATH_ENV C_ONLY =-x 123 0x80000000 CARGS Switches to C compiler =-x 123 0x80000000 -x 123 4 -x 119 0x20 -def __pgnu_vsn=70500 -x 70 0x40000000 -x 183 4 -x 121 0x800 -x 6 0x20000 -x 121 0x400000 CCNEXTCOUNT =0 CCOMPCOMMANDS =cpp1 CCOMPDIR Directory containing the C compiler =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools CEXTARGS Arguments for extracting =-x 14 0x80 CG =llvm CGARGS Code Generation switches to native compiler =-x 70 0x40000000 -x 8 0x40000000 -x 164 0x800000 -x 85 0x2000 -x 85 0x4000 -x 34 0x40000000 -x 53 0x800000 -x 206 0x02 -x 68 0x1 -x 39 4 -x 56 0x10 -x 26 0x10 -x 26 1 -x 56 0x4000 -x 124 1 -y 163 0xc0000000 -x 201 0xf0000000 -x 189 0x10 -y 189 0x4000000 CGMANPIN CHEADERSUFFIX =h CHECKCUDALIB =0 CLANG =clang CLANGARGS =-openmp-opt-disable CLANGCMD =clang CLANGCOMPBIN Clang directory =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/share/llvm/bin CLANGMCPU =-march=znver2 -mcpu=znver2 CLANGMODEL CLANGPIC CLANGUSERARGS CLFLUSHOPT =1 CLTPVAL =-tp zen2 CLZERO =1 COMMLIBSDIR COMMLIBSINCDIR COMMLIBSLDDIR COMMLIBSLPATHDIR COMMLIBSRPATHDIR COMPBASE =/opt/nvidia/hpc_sdk COMPBASE64 =/opt/nvidia/hpc_sdk COMPBBIN =compilers/bin COMPBIN Compiler binary directory =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin COMPBSHARE =compilers/share COMPGLIBDIR COMPGLIBLFDIR COMPILEONLY Compile, do not assemble COMPINCDIR Compiler include subdirectory =include COMPINCDIRFULL =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include COMPINCPREFIX =compilers/ COMPLIB Compiler library directory =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib COMPLIBDIR Compiler library subdirectory =lib COMPLIBLF COMPLIBLFDIR Compiler library subdirectory for large file support COMPLIBMP COMPLIBOBJ =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib COMPLIBPREFIX =compilers/ COMPLIBSO COMPLIBSTATIC COMPLIBSUBDIR =compilers/lib COMPREFIX COMPSYS =Linux_x86_64 COMPUTECAP =35 50 COMPUTECAPS =35 50 COMPVER =21.9 CONCUR Add multiprocessor thread libraries =YES CONCURCOMPILE Compiling with -Mconcur or -mp CONCURSW Add multiprocessor thread libraries =YES CONV =conv CPATH_ENV =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include CPLUS64LDARGS CPLUS_INCLUDE_PATH_ENV CPP =pgCC CPP1ARGS Switches passed to C++ phase 1 =--gnu_version=70500 -D__pgnu_vsn=70500 CPP1DEFARGS Switches passed to C++ phase 1 CPP1MANPIN CPP1ONLY C++ phase 1 only CPP2ARGS Switches passed to C++ phase 2 =-gnuvsn 70500 -x 69 0x200 CPP2DEFARGS Switches passed to C++ phase 2 CPPASC CPPASCPP =C cpp cc cxx c++ CPPCOMP1 Name of the C++ compiler phase 1 module =cpp1 CPPCOMP2 Name of the C++ compiler phase 2 module =cpp2 CPPCOMPCOMMANDS C++ compile commands =nocpp CPPCOMPDIR Directory containing the C compiler =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools CPPDEPEND CPPDEPENDFILE CPPEXT Name of the C++ compiler extractor for inlining =cpp2ex CPPEXTCOMMANDS C++ extract commands =cpp1 CPPHEADERSUFFIX =H hpp hh hxx h++ CPPLDARGS CPPLIB CPPPREINC --preappend switches passed to C++ phase 1 =--preinclude _cplus_preinclude.h --preinclude_macros _cplus_macros.h CPPSTDLIBS CPPSUFFIX Suffixes to be compiled by C++ compiler =cpp CRTL =-lnsnvc -lnvc CSUFFIX Suffixes to be compiled by C compiler =c i CUASCU =cu CUBLASSTDLIB =c CUCOMMANDS Commands to run for CUDA files CUDA_DRIVER_VERSION CUDA_DRIVER_VERSION_STR CUDA_DRIVERS_SUPPORTED CUDA_HOME CUDA_HOME_ENV CUDA_NOATTACH =0 CUDACUDAVERSION CUDAINC CUDALIBDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda//lib64 CUDALIBDIRNAME =lib64 CUDALIBINSTALL CUDALIBSTATIC CUDAMAJOR =Linux_x86_64/21.9/cuda CUDAMATHDIR CUDAMATHINCDIR CUDAMATHLIBDIR CUDANCCLDIR CUDANCCLINCDIR CUDANCCLLIBDIR CUDANEEDED =0 CUDANVSHMEMDIR CUDANVSHMEMINCDIR CUDANVSHMEMLIBDIR CUDAROOT CUDARPATH CUDARPATHNEEDED =0 CUDARTLIBS =cudadevrt cudart CUDARTNEEDED =0 CUDARTSTATIC CUDASITELIB CUDAVER CUDAVERSION CUDAVERSIONDEFINE CUDAVSNSUFF =10 CUDAXDY =0.0 CUDAXXYY =0 CUDAXXYY1 CUDAXXYY2 =0 CUDAXY =00 CUFSUFFIX CUDA Fortran suffixes to be compiled by f90 compiler =CUF cuf CUFX CUHEADERSUFFIX =cuh CULIBOSSTATIC CUPASCUP =cup CUPHEADERSUFFIX CUPSUFFIX Suffixes for CUDA preprocessed code to be compiled by C++ compiler =cup CURDIR =/global/u2/m/madams/petsc CURRPATH =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin CUSUFFIX Suffixes for CUDA code to be compiled by C++ compiler =cu CZCCFF =-cz DDEFACCEL DDEFNOOPENMP DDEFNOSGIMP DEBUG Debug setting DEBUG2 Debug dwarf level DEBUG2DEF Debug debug dwarf level DEBUGFLAG DEBUGFLAG_64 =0 DEBUGSET DEF901ACC DEF_PGCG_SOURCE DEFACC DEFACCDEBUG DEFACCEL =tesla host DEFACCPRESTDINC DEFACCRELOC =0 DEFAS Name of assembler program =as DEFASARGS DEFASDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin DEFASTYPE =ELF DEFAULT_COMMLIBSDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/comm_libs DEFAULT_CUDA_HOME DEFAULT_CUDAMATHDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/ DEFAULT_CUDANCCLDIR DEFAULT_CUDANVSHMEMDIR DEFAULTCAPFLAG DEFAULTCHEADERS =h DEFAULTCPPASCPP =C cpp cc cxx c++ DEFAULTCPPHEADERS =H hpp hh hxx h++ DEFAULTCUASCU =cu DEFAULTCUHEADERS =cuh DEFAULTCUPASCUP =cup DEFAULTLLVM =1 DEFBMODE =-x 123 4 DEFC99 =1 DEFCACHESIZE DEFCARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 -x 66 0x80000000 DEFCCFFVALUE =0x6CFF7 DEFCCOMPDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools DEFCEXTARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 DEFCGMANPIN DEFCLANGMCPU =-march=znver2 -mcpu=znver2 DEFCOMMON =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 DEFCOMPUTECAP =35 50 DEFCOMPUTECAPS =35 50 DEFCPP1MANPIN DEFCPPARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 DEFCPPDEFS =__PGI __NVCOMPILER DEFCPPINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include DEFCPPLDARGS DEFCPPLIB =Cz DEFCPPLIBS DEFCPPSTDLIBS DEFCUDARPATH DEFCUDAVERSION =11.4 DEFDEFACCRELOC =0 DEFDEFDEF4ACCRELOC =0 DEFDEFDEFACCRELOC =0 DEFDEFS =unix __unix __unix__ linux __linux __linux__ __NO_MATH_INLINES __LP64__ __x86_64 __x86_64__ __LONG_MAX__=9223372036854775807L __SIZE_TYPE__=unsigned long int __PTRDIFF_TYPE__=long int __amd64 __amd64__ __k8 __k8__ __MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ __SSE4_1__ __SSE4_2__ __AVX__ __AVX2__ __F16C__ __FMA__ __XSAVE__ __XSAVEOPT__ __XSAVEC__ __XSAVES__ __POPCNT__ __SHA__ __AES__ __PCLMUL__ __CLFLUSHOPT__ __FSGSBASE__ __RDRND__ __BMI__ __BMI2__ __MWAITX__ __CLZERO__ DEFDEFUNSIGNED =NO DEFF901ARGS =-nostatic -x 19 0x400000 -quad -x 59 4 -x 15 2 -x 49 0x400004 -x 51 0x20 -x 57 0x4c -x 58 0x10000 -x 124 0x1000 -tp zen2 -x 57 0xfb0000 -x 58 0x78031040 -x 47 0x08 DEFF901MANPIN DEFF902ARGS =-x 51 0x20 -x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 -x 124 0x1400 -y 15 2 -x 57 0x3b0000 -x 58 0x48000000 DEFF902COMMON =-x 51 0x20 -x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 -x 124 0x1400 -y 15 2 DEFF90COMMON =-x 19 0x400000 -quad -x 59 4 -x 15 2 -x 49 0x400004 -x 51 0x20 -x 57 0x4c -x 58 0x10000 -x 124 0x1000 DEFF90EXTARGS =-x 124 0x1400 -x 51 0x20 -nostatic DEFFARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 -x 51 0x20 -x 124 0x1401 DEFFEXTARGS =-x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x 28 0x40000 -x 120 0x10000000 -x 70 0x8000 -x 122 1 -x 125 0x20000 -quad -x 59 4 -tp zen2 -x 120 0x1000 -x 51 0x20 -x 124 0x1401 DEFFLUSHVAL DEFFTNRTL Name of f77 runtime library =-lnvf DEFGNU =--gnu_version=70500 -D__pgnu_vsn=70500 DEFGNU2 =-gnuvsn 70500 DEFGNUC =-def __pgnu_vsn=70500 DEFHOST =host DEFIPAEXPORTVAL DEFKEEPOBJ Default keep object file behavior DEFKEEPPREPRO Keep preprocessor file DEFLCUDAFOR2LIB DEFLCUDAFORLIB DEFLCUDALIB DEFLD Name of loader =ld DEFLDARGS Default linker args =-m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld DEFLDDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin DEFLDENDUP =/usr/lib64/gcc/x86_64-suse-linux/7/crtend.o /usr/lib64/crtn.o DEFLDSTARTUP =/usr/lib64/crt1.o /usr/lib64/crti.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o --eh-frame-hdr DEFLIBDIR =/usr/lib64 DEFLINKFILES DEFLINKOUT Default output of link step DEFLLCFASTISEL =-fast-isel=0 DEFLLCMCPU =-mcpu=native DEFLLVMMCMCPU =-mcpu=znver2 DEFLLVMOPTMCPU =-mcpu=native DEFMANMCUDALIB DEFMULTIONLY DEFMUNCHLDSTARTUP =/usr/lib64/crt1.o /usr/lib64/crti.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o --eh-frame-hdr DEFMVDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin DEFNOOPENMP DEFNOSGIMP DEFPRED =-predicate #machine(x86_64) #lint(off) #system(posix) #cpu(x86_64) DEFPREPRO Name of preprocessor program =nvprepro DEFSTDDIRS =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib /usr/lib64 /usr/lib64/gcc/x86_64-suse-linux/7 DEFSTDINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include /usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/include /usr/include DEFSTDLIBS =-lnvf -lnvomp -ldl --as-needed -lnvhpcatm -latomic --no-as-needed -lpthread --start-group -lnvcpumath-avx2 -lnsnvc -lnvc --end-group -lrt -lpthread -lm -lgcc -lc -lgcc -lgcc_s DEFSTDOBJDIR =/usr/lib64 DEFSTDPARCOMPUTECAP DEFSTDPATHS =-rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -rpath /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 DEFTESLAONLY =1 DEFTPVAL DEFUNSIGNED Default char is unsigned =NO DEFUSESSELIBS =1 DETECTCUDA =0 DETECTCUDAVERSION DETECTEDCAPS DEVDEBUG =0 DIALECTARGS Switches passed to C++ phase 1 =--c DLLIB =-ldl DOACCLINK =0 DODWARF =1 DOFPIC DRIVER =Fortran DRIVERCOMMAND =nvfortran DRIVERDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin DRIVERHOST =login18 DRIVERLANG =Fortran DRIVERNAME =nvfortran DRYRUN Display but do not execute each command =0 DRYSTDINC Display standard include directories and exit dummy DYNAMICLINK This is set when creating a shared object or dynamic library =0 ECHONAME Echo file names as they are compiled =1 EDG_INCLUDES =-I- -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include --sys_include /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include --sys_include /usr/lib64/gcc/x86_64-suse-linux/7/include --sys_include /usr/local/include --sys_include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed --sys_include /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/include --sys_include /usr/include EHFRAME =--eh-frame-hdr ENABLENVVM70COMPILERFLAG =-x 187 0x40000 ENABLENVVM70GPUCODEGENERATIONFLAG =-x 187 0x8000000 ENDGROUP ENVCUDAVERSION ENVSYSINC ENVUSRINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include EXE EXPLICITFORM Form is explicitly provided EXTENSION =__extension__= EXTRAACCLNK EXTRACOMPLIBDIR EXTRACT EXTRACTINLINE EXTRACTLIB EXTRACTLIBDEF =Extract.dir EXTRACTLIBSET EXTRACTLIBVAL EXTRACTONLY EXTRACTTOC EXTRACUDAFORLIB EXTRAF901ARGS =-x 48 4608 -x 49 0x100 EXTRAF902ARGS =-x 49 0x100 EXTRAINIT F16C =1 F901 Name of the Fortran phase 1 module =fort1 F901ARGS Switches passed to F90 compiler =-vect 48 -x 54 1 -x 68 0x1 -x 70 0x40000000 -x 70 0x40000000 -x 68 0x1 -x 124 1 -x 195 0x8000 -y 163 0xc0000000 -x 201 0xf0000000 -x 189 0x10 F901DEFARGS More switches passed to F90 compiler =-x 54 1 F901MANPIN F902 Name of the Fortran phase 2 module =fort2 F902ARGS Switches passed to F90 back end =-x 68 0x1 -x 8 0x40000000 -x 70 0x40000000 -x 56 0x10 -x 54 0x10 F90E =f901 F90EXT Name of the Fortran extractor for inlining =fort2ex F90SUFFIX Suffixes to be compiled by f90 compiler =F90 f90 F f F90X =f901 FACTORIZE =0x2 FARGS Switches to Fortran compiler FBADCUDALIB FBLANKCUDALIB =0 FCGARGS Switches passed to F90 compiler back end =-x 183 4 -x 121 0x800 FCOMPCOMMANDS Fortran compile commands =f901 f902 FEXTCOMMANDS Fortran extract commands =f901ext FFEARGS Switches to Fortran Front End file files FIPACGARGS FIPAVAL =-x 89 0x80800842 -x 66 0x20000 -y 89 0x40 FIPAVALUE FLAGREPLACEMENTTABLE FLANG1 Name of the Fortran phase 1 module =flang1 FLANG1ARGS Switches passed to nvflang compiler FLUSHVAL FMA =1 FMA4 FNEEDCUDA =0 FORCEDBGLLVM =0 FORCELILLVM =0 FORCELLVM =1 FORTRANMPI =fmpich mpichf90 FPCONTRACT =--fp-contract=on FPIC FSGSBASE =1 FTNALT Name of alternate startup object module with -Munixlogicals FTNMAIN Name of Fortran MAIN program object module =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o FTNRTL Name of f77 runtime library =-lnvf FTNUNIXALT Name of alternate startup object module with -Munixlogicals =f90alt.o FULL_SSE_DEFS =__MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ __SSE4_1__ __SSE4_2__ __AVX__ __AVX2__ __F16C__ __FMA__ __XSAVE__ __XSAVEOPT__ __XSAVEC__ __XSAVES__ __POPCNT__ __SHA__ __AES__ __PCLMUL__ __CLFLUSHOPT__ __FSGSBASE__ __RDRND__ __BMI__ __BMI2__ __MWAITX__ __CLZERO__ FXSR G77DIR =/usr/lib64/gcc/x86_64-suse-linux/7/ G77LIBDIR G77LIBLIB GBASE GCCDIR =/usr/lib64/gcc/x86_64-suse-linux/7 GCCINC =/usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/include /usr/include GCCLIBS =-L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 GCCRPATH =-rpath /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 GCCVERSION =70500 GENCCFF =0 GENPREPROCESS =genpreprocess GFNI =0 GGPUFILE =0 GNUATOMIC =-latomic GPPDIR =/usr/include/c++/7 /usr/include/c++/7/x86_64-suse-linux /usr/include/c++/7/backward /usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/x86_64-suse-linux/include /usr/include GPU =0 GPU_FASTMATH =0 GPU_MATH_UNIFORM =0 GPUNKW =1 GSYS GSYSFLAG =-tp zen-64 HANDLEOTHER =copyother HASMSMPIFLIBNAME =1 HASMSMPIFLIBNAME32 =0 HASMSMPIFLIBNAME64 =0 HCOMPDIR Directory containing the F90 front ends =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools helpvalues HOSTCPP1ARGS =--llalign HOSTOBJSUFFIX Suffix for object files =o HUGELIB HUGEN HXRT_DEV =-lhxrt_dev I8STORAGE Indicates whether to include f90i8st.o object IEEE IEEE conformance IGNORECUDALIB ILDIR ILPALIGN IMPLICITSECTIONS =1 IMPORT =import IMPSW Linker switch for import libraries =-defaultlib: INFORM What level of informative messages =-inform warn INFOTPVAL =-tp zen-64 INITARGS INLINE INLINEARGLIB Inlining arguments to compiler/extractor INLINEARGS Inlining arguments to compiler/extractor INLINECARGS Inlining arguments to compiler INLINELIST Inlining arguments to compiler/extractor INLINESIZE input INTEGER64BIT =NO INTEL =0 INTRINLEVEL =4 IPA14 =0x104 IPA14r IPA66 =0x20000 IPA89 =0x80800842 IPAADD Collected command line switches that should added on the recompile IPAADDINLINE IPAADDSW Command line switches that should added on the recompile IPAC2ARGS IPA arguments passed to the f90 compiler back end IPACARGS IPA arguments passed to the compiler IPACGARGS IPADIR Directory containing IPA tools =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools IPAEXPORT IPAEXPORTVAL IPAIGNORE0 Command line switches that should not be passed on the recompile =-c -Mkeepasm -Mpreprocess IPAIGNORE1 Command line switches that should not be passed on the recompile =-Mextract -Wi -Minline IPAIGNORE2 Command line switches that should not be passed on the recompile =-L -I -l -o IPAINLINE IPAINLINELIST IPALD =ipa IPALIBCSW =--Mipainlinelibc IPALINK Run IPA linker phase 1 IPALINKENABLE IPANOARG IPARECOMPILE IPARGS Arguments to IPA linker IPAVAL =-x 89 0x80800842 -x 66 0x20000 -x 14 0x104 -y 89 0x40 IPAVALUE IPAVERBOSITY =1 IPNOP Arguments to IPA linker =-nop IPOFILE IS_CPLUS =0 ISACCLIBNEEDED =0 ISANYAVX =-avx2 ISCOMPFORGPU =0 ISCUDALIB ISCUDARTNEEDED =0 ISFTN =1 ISMCUDALIB ISSTATIC =0 ISTPHOST =0 KEEPASM Keeps the assembler file KEEPBC Keep byte-code file KEEPCCFF =-keep KEEPCCI Keeps the intermediate call context information file KEEPIL Keeps the intermediate C++ .il and F90 .ilm files KEEPLL Keeps the intermediate llvm assembly description file KEEPLLVM Keeps llvm file after the optimization KEEPOBJ Keep object file KEEPPREPRO Keep preprocessor file KEEPSTB KEEPTEMP Keep temporary files KNL LC =-lgcc -lc -lgcc -lgcc_s LCRT1 =/usr/lib64/crt1.o LCRTB =/usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o LCRTBDEF =/usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o LCRTE =/usr/lib64/gcc/x86_64-suse-linux/7/crtend.o LCRTI =/usr/lib64/crti.o LCRTN =/usr/lib64/crtn.o LCUDAFOR2LIB LCUDAFORLIB LCUDALIB LD Name of loader =ld LDARGS Loader arguments LDDIR Directory containing loader =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin LDINPUTPOST LDINPUTPRE LDLIBARGS Loader arguments LDLIBS Loader libraries LDLIBSLIST LDSHARED LDSO =/lib64/ld-linux-x86-64.so.2 LDSWITCHES Loader switches LEVENTI LFC =-lgfortran LIBCULIBOS LIBDIR Standard linker library directory =/usr/lib64 LIBMEMIL =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/libmem.il LIBNCURSES =YES LIBRARY_PATH LIBRARY_PATH_ENV LIBSSW Linker switch for system libraries =-l LIBSUFFIX Suffix for library files =a so LIBSW Linker switch for libraries =-l LIBSW_NOLIB Linker switch for libraries with names that don't begin with lib =-l LINITACC LINITMP LINKNOBJSUFFIX Non-object suffixes to be passed to linker =a lo la LINKOBJSUFFIX Object suffixes to be passed to linker =o LINKSUFFIX Suffixes to be passed to linker =o a lo la LINUXCOMMON =-quad LLC =llc LLCARCH =-march=x86-64 LLCARGS =-non-global-value-max-name-size=4294967295 -x86-cmov-converter=0 LLCCMD =llc LLCDO LLCDONE LLCFASTISEL =-fast-isel=0 LLCFLOATABI LLCFRAMEPOINTER =--frame-pointer=none LLCISEL LLCMATTR LLCMCPU =-mcpu=znver2 LLCMODEL LLCOPT LLCOPTMAX =3 LLCPIC LLCSUFFIX =ll llvm LLCTARGET100ARGS =-x86-cmov-converter=0 LLCTARGET110ARGS =-x86-cmov-converter=0 LLCTARGET50ARGS =-x86-cmov-converter=0 LLCTARGET60ARGS =-x86-cmov-converter=0 LLCTARGET70ARGS =-x86-cmov-converter=0 LLCTARGET80ARGS =-x86-cmov-converter=0 LLCTARGET90ARGS =-x86-cmov-converter=0 LLCX86CMOV =0 LLFASTMATH =0 LLNASM =Nasm LLONLY LLOPT =opt LLOPTSUFFIX =ll llvm LLUNSAFEMATH =--enable-unsafe-fp-math --enable-no-nans-fp-math --enable-no-infs-fp-math --enable-no-signed-zeros-fp-math LLVMARGS LLVMASMONLY Keeps llvm file after the optimization LLVMCOMPBIN LLVM Utils directory =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/share/llvm/bin LLVMDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/share/llvm LLVMDO LLVMFAST =0x01 LLVMFLAGS =-x 189 0x10 LLVMFMA =0 LLVMLLCLEVEL =1 LLVMLLCLEVELOVERRIDE LLVMMC =llvm-mc LLVMMCARCH =-arch=x86-64 LLVMMCARGS LLVMMCATTR LLVMMCMCPU =-mcpu=znver2 LLVMOPT Go through LLVM opt tool LLVMOPT2PASS =NO LLVMOPTARGS =-O2 -openmp-opt-disable LLVMOPTARGS1 =-tbaa -targetlibinfo -basicaa -domtree -verify -simplifycfg -domtree -sroa -early-cse -lower-expect LLVMOPTARGS2 =-targetlibinfo -tbaa -basicaa -domtree -verify -globalopt -ipsccp -deadargelim -instcombine -simplifycfg -basiccg -prune-eh -inline -functionattrs -argpromotion -sroa -domtree -early-cse -lazy-value-info -jump-threading -correlated-propagation -simplifycfg -instcombine -tailcallelim -simplifycfg -reassociate -domtree -loops -loop-simplify -lcssa -loop-rotate -licm -lcssa -loop-unswitch -instcombine -scalar-evolution -loop-simplify -lcssa -indvars -loop-idiom -loop-deletion -loop-unroll -memdep -gvn -memdep -memcpyopt -sccp -instcombine -lazy-value-info -jump-threading -correlated-propagation -domtree -memdep -dse -adce -simplifycfg -instcombine -strip-dead-prototypes -globaldce -constmerge -globalopt -ipsccp -deadargelim -instcombine -simplifycfg -basiccg -prune-eh -inline -functionattrs -sroa -domtree -early-cse -lazy-value-info -jump-threading -correlated-propagation -simplifycfg -instcombine -tailcallelim -simplifycfg -reassociate -domtree -loops -loop-simplify -lcssa -loop-rotate -licm -lcssa -loop-unswitch -instcombine -scalar-evolution -loop-simplify -lcssa -indvars -loop-idiom -loop-deletion -loop-unroll -memdep -gvn -memdep -memcpyopt -sccp -instcombine -lazy-value-info -jump-threading -correlated-propagation -domtree -memdep -dse -adce -simplifycfg -instcombine -strip-dead-prototypes -globaldce -constmerge -domtree -verify LLVMOPTCMD =llvmopt LLVMOPTLEVEL =2 LLVMOPTLEVELOVERRIDE LLVMOPTMCPU =-mcpu=znver2 LLVMOPTOLDVECTARG LLVMOPTSKIPNATIVE =0 LLVMOPTUSERARGS LLVMOPTVECTARG LLVMVECT =YES LLVMVERFLAGS =-x 249 110 LLVMVERINT =110 LLVMVERSION =11.0 LM =-lm LMP =-lnvomp -ldl --as-needed -lnvhpcatm -latomic --no-as-needed -lpthread LMP_ONLYMP =-lnvhpckomp LMPILIB LMPIPROFLIB LNGACC =0 LNGOMP =0 LNGSPA =0 LNSPGC =-lnsnvc LOCALBINDLIB LOCALBINDPATHS LOCALCOMPLIB Local compiler library directory LOCALCOMPLIBLF LOCALDEFS LOCALRC =YES LOCSCRIPT Flag whether to include the linker script for shared objects =0 LPROFO LRTLIB =-lrt -lpthread LRTLIBNAME =-lrt -lpthread LSCALAPACK LTHREAD =-lpthread LTRACE =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o LWP =0 LZCNT =0 MAJOR Major release version =2021 MALIGN MANAGED =0 MANINIT =0 MANMCUDALIB MANPREFER MATHCUDALIB MATHCUDALIBLIST MAXFUNCSIZE =600 MAXTOTALSIZE =25000 MAYNEEDMANAGEDMEMORY =0 MCUDAASNEEDED MCUDAASNONEEDED MCUDALIB MEDIUM MKL_LOCATION MMX =1 MOVDIR64B =0 MOVDIRI =0 MPDEFCPP MPDEFCPPDEF MPFAIR MPFAIRDEF MPGPULINK Set if compiling OpenMP for GPU =0 MPI_EXTRAFTNOBJ MPIBASEDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich MPIBASELIB =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/lib MPIINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/include MPILIB =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/lib MPILIBDIR =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/lib MPILIBDIRNAME =lib MPILIBINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/../mpi/mpich/include MPILIBNAME =mpich MPILIBVER MPIMSINC MPIMSLIB MPIMSLIBNAME =msmpi MPISGIDIR =/opt/sgi/mpt/mpt-2.06 MPISGIINC =/opt/sgi/mpt/mpt-2.06/include MPISGILIB =/opt/sgi/mpt/mpt-2.06/lib MPISGIROOT MPITYPE =MPICH MPIUDIR MPSET MPSETCPP MPSETDEF MPSETDEFCPP MPX =0 MRTL =-lnvcpumath-avx2 MSGTPVAL =-tp zen-64 MSLINK MSMPI_INC MSMPI_LIB32 MSMPI_LIB64 MSMPIDIR MSMPIFLIBNAME =msmpifec MSMPIINC MSMPILIB32 MSMPILIB64 MULTICORETRACE =1 MUSTRESTART =0 MVECT Collected set of -Mvect options MWAITX =1 MYLOCALRC NEEDACCLIB =0 NEEDCUBLAS =0 NEEDCUDA100 NEEDCUDA110 NEEDCUDA111 NEEDCUDA80 NEEDCUDA90 NEEDCUDAALL =0 NEEDCUDACOMMPATHS =0 NEEDCUDACUBLAS =0 NEEDCUDACUFFT =0 NEEDCUDACUFFTW =0 NEEDCUDACURAND =0 NEEDCUDACUSOLVER =0 NEEDCUDACUSPARSE =0 NEEDCUDACUTENSOR =0 NEEDCUDAMATHPATHS =0 NEEDCUDANCCL =0 NEEDCUDANVBLAS =0 NEEDCUDANVLAMATH =0 NEEDCUDANVSHMEM =0 NEEDCUFFT =0 NEEDCUFFTCALLBACK =0 NEEDCUFFTW =0 NEEDCURAND =0 NEEDCUSOLVER =0 NEEDCUSPARSE =0 NEEDCUTENSOR =0 NEEDIMPLICITMANAGED =1 NEEDLOCSCRIPT Flag whether to include the linker script for shared objects =0 NEEDMANAGEDMEMORY =0 NEEDMCUDALIB =or(0,0,0,0,0,0,0,0,0,0) NEEDNCCL =0 NEEDNVBLAS =0 NEEDNVHPCLDSYMS =0 NEEDNVLAMATH =0 NEEDNVSHMEM =0 NEEDOMPAUTOOFFLOAD =0 NEEDOMPOFFLOAD =0 NEEDOMPT =0 NEWPP1 =--preinclude _cplus_preinclude.h --preinclude_macros _cplus_macros.h NKEEP =0 NO_3DNOW =0 NO_3DNOWA =0 NO_ABM =0 NO_AES =0 NO_AVX =0 NO_AVX2 =0 NO_AVX512BITALG =0 NO_AVX512BW =0 NO_AVX512CD =0 NO_AVX512DQ =0 NO_AVX512ER =0 NO_AVX512F =0 NO_AVX512IFMA =0 NO_AVX512PF =0 NO_AVX512VBMI =0 NO_AVX512VBMI2 =0 NO_AVX512VL =0 NO_AVX512VPOPCNTDQ =0 NO_BMI =0 NO_BMI2 =0 NO_CLFLUSHOPT =0 NO_CLZERO =0 NO_F16C =0 NO_FMA =0 NO_FMA4 =0 NO_FSGSBASE =0 NO_FXSR =0 NO_GFNI =0 NO_LWP =0 NO_LZCNT =0 NO_MMX =0 NO_MOVDIR64B =0 NO_MOVDIRI =0 NO_MPX =0 NO_MWAITX =0 NO_PCLMUL =0 NO_PKU =0 NO_POPCNT =0 NO_PREFETCHWT1 =0 NO_RDRND =0 NO_RTM =0 NO_SHA =0 NO_SSE =0 NO_SSE2 =0 NO_SSE3 =0 NO_SSE41 =0 NO_SSE42 =0 NO_SSE4A =0 NO_SSSE3 =0 NO_TBM =0 NO_TP_OR_TP_HOST =0 NO_VAES =0 NO_VPCLMULQDQ =0 NO_XOP =0 NO_XSAVE =0 NO_XSAVEC =0 NO_XSAVEOPT =0 NO_XSAVES =0 NOASM Indicates whether to generate asm file NOASNEEDED =--no-as-needed NOBOUNDSCHECK =0 NOFRAME Indicates whether -Mnoframe is selected =YES NOILM Indicates whether to generate .ilm file NOINSTRFILELIST File exclude list for Minstrument. Looks for given path as substring of full path NOINSTRFUNCS Function exclude list for Minstrument. Looks for given string as substring of function name NOLLALIGN NOOPENMP NOPGIRPATH NORDC =0 NORPATH NOSGIMP NOSIMD256 NOSIMD512 =zen-64 NOSTARTUP Indicates whether to exclude standard startup object files NOSTATIC =0 NOSTDCPPLIBS Indicates whether to exclude standard C++ language libraries =1 NOSTDFTNLIBS Indicates whether to exclude standard Fortran language libraries NOSTDLIBDIRS Indicates whether to exclude standard library directories NOSTDLIBPATHS Indicates whether to exclude standard library directories from rpath NOSTDLIBS Indicates whether to exclude standard libraries NOWARN Suppress warning messages NVBE =nvbe NVCCHOST =0 NVCOMPILER =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9 NVCOMPILER_COMM_LIBS_HOME =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/comm_libs/ NVCOMPILER_CUDA_HOME NVCOMPILER_MATH_LIBS_HOME =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/ NVCOMPILER_NCCL_HOME NVCOMPILER_SHMEM_HOME NVDD =nvdd NVF_X86AVX =-avx2 NVHPCLDSYMS =--dynamic-list=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.syms NVHPCLDSYMSPATH =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.syms NVILINKARGS NVINCDIRENV NVLAMATH_SFX = NVLIBC_DEV =-lnvlibc_dev NVLIBSDIRENV NVLIBSENV NVOMP_DEV =-lnvomp_dev NVOMP_DEV_CUDAXY NVOMPLIB =-lnvomp NVOMPLIBS =-lnvomp -ldl NVOPTLINCDIR NVOPTLLIBS NVOPTLLIBSDIR NVVM70FLAGS =-x 187 0x40000 -x 187 0x8000000 NVVM70ISDEFAULT OBJDIR default directory in which to keep object files OBJSUFFIX Suffix for object files =o OBJSUFFIXES Suffixes for object files =o OEM_INFO =64-bit target on x86-64 Linux -tp zen-64 OFEDLIBDIR =environment(OFEDLIBDIR) OLDESTCUDASHIPPED =10.2 OLDSTDINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include OMPATMFLAGS OMPAUTOOFFLOADSUFFIX OMPAUX =-Bdynamic -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -lnvmalloc OMPCOMPUTECAPS OMPDEVLIB OMPINIT =0 OMPINITOBJ OMPINTEROPEND =-lnvomp OMPINTEROPSTART OMPLIB =-lnvomp -ldl OMPLIBDEBUG OMPLIBDEVDEBUG OMPLINKFILE OMPPRESTDINC OMPTSUFFIX OPT110ARGS =-openmp-opt-disable OPTARGS =-openmp-opt-disable OPTCARGS OPTCGARGS OPTF901ARGS OPTLEVEL Compiler optimization level =1 OPTLEVELDEF Default optimization level without -O =1 OPTLEVELINITDEF Initial default optimization level without -O =1 OPTLEVELINITDEF1 Initial default optimization level without -O =1 OPTLEVELMAX Maximum legal opt level =4 OPTLEVELMIN Minimum legal opt level =0 OTHERPREPROCESS =otherpreprocess OUTFILE Output file name OVERRIDECPPDEPENDFILE OVERRIDESUFFIX PADDFLAG =-x 186 0x80 PAPIDIR Directory containing libpapi.a =/usr/local/lib PASSPIE =0 PATH =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin PCLMUL =1 PERS =nvi PERSONALITY library that resolves gxx_personality_v0 for the -Mcuda link PFX =nv PFY =nvhpc PGATM =-lnvhpcatm PGF90LIB Name of f90 runtime libraries =-lnvf PGI_CUDA_HOME PGILD =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld PGISTATIC PGISTATICX PGIUNSTATIC PGIUNSTATICX PGLEN =64 PGLLVMTARGET =yes PGLLVMVFP PGSYS =lin86 PININIT =0 PKU =0 PNM =nvnm POPCNT =1 POSTOPTIONS Default options to follow command line PREFETCHWT1 =0 PREINCLUDE PREOPTIONS Default options to preceed command line PREPRO Name of preprocessor program =nvprepro PREPROARGS Arguments to preprocessor program PREPROCONLY Stop after preprocessor PREPRODIR Directory containing preprocessor program =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin PREPROSUFFIX Suffix of preprocessor file =f PRINTRESTARTCMD =0 PROFFLAG PROFILE Use profile startup and libraries PROFILESW Use profile startup and libraries RDRND =1 READCUDAVERSION READVERSIONTXT realfiles RECIPDIV =0 REPLACESWITCHES =0 REQCUDAVERSION RESTARTENV RESTARTNAME RMARGS RTM =0 SCALARSSE SETCAPS =0 SHA =1 SIMD256 =0 SIMD512 =0 SITEASMPPSUFFIX SITEASMSUFFIX SITECPPSUFFIX SITECSUFFIX SITECUFPPSUFFIX SITECUFSUFFIX SITECUSUFFIX SITEDEF SITEF77PPSUFFIX SITEF77SUFFIX SITEF90PPSUFFIX SITEF90SUFFIX SITEINC SITELIB SITELIBSUFFIX SITEOBJSUFFIX SITERPATH SITERPATHS SMALLSIZE =5 SPACOMPUTECAPS SRCFILES List of source files SRCSUFFIX Source file suffixes =c i cpp asm cu f f90 F F90 cuf CUF SSE =1 SSE2 =1 SSE3 =1 SSE41 =1 SSE42 =1 SSE4A =1 SSEDEFS =__MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ __SSE4_1__ __SSE4_2__ __AVX__ __AVX2__ __F16C__ __FMA__ __XSAVE__ __XSAVEOPT__ __XSAVEC__ __XSAVES__ __POPCNT__ __SHA__ __AES__ __PCLMUL__ __CLFLUSHOPT__ __FSGSBASE__ __RDRND__ __BMI__ __BMI2__ __MWAITX__ __CLZERO__ SSSE3 =1 STARTGROUP STATICLIB =0 STATICSTR status =0 STDDEF =unix __unix __unix__ linux __linux __linux__ __NO_MATH_INLINES __LP64__ __x86_64 __x86_64__ __LONG_MAX__=9223372036854775807L __SIZE_TYPE__=unsigned long int __PTRDIFF_TYPE__=long int __amd64 __amd64__ __k8 __k8__ __MMX__ __SSE__ __SSE2__ __SSE3__ __SSSE3__ __SSE4A__ __ABM__ __SSE4_1__ __SSE4_2__ __AVX__ __AVX2__ __F16C__ __FMA__ __XSAVE__ __XSAVEOPT__ __XSAVEC__ __XSAVES__ __POPCNT__ __SHA__ __AES__ __PCLMUL__ __CLFLUSHOPT__ __FSGSBASE__ __RDRND__ __BMI__ __BMI2__ __MWAITX__ __CLZERO__ STDINC =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include /usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/include /usr/include STDOBJDIR Directory containing standard startup object files =/usr/lib64 STDPRED =-predicate #machine(x86_64) #lint(off) #system(posix) #cpu(x86_64) STDRPATH =-rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib STDRPATHLF STDRPATHMP STDRPATHSO STRICTBMODE =-x 123 4 STRIP =strip switches =-tp=zen2 -show SYS64 =linux86-64-llvm SYSACCELS =tesla SYSACCLIBS SYSACCOBJS SYSCAP =35 50 60 61 70 75 80 86 SYSTEMINC =/usr/lib64/gcc/x86_64-suse-linux/7/include /usr/local/include /usr/lib64/gcc/x86_64-suse-linux/7/include-fixed /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/include /usr/include SYSV_PROF Is System V profiling used TA =0 TACPU =0 TAGPU =0 TARGET Target system =linux86-64 TARGETARCH =64 TARGETCOMMON =-x 70 0x8000 -x 122 1 -x 125 0x20000 TBM =0 TGLACC =0 TGLACCCPU =0 TGLACCGPU =0 TGLACCSEQ =0 TGLOMP =0 TGLOMPCPU =0 TGLOMPGPU =0 TGLSPA =0 TGLSPACPU =0 TGLSPAGPU =0 TGT =0 TGTACC =5 TGTACCCPU =0 TGTACCGPU =0 TGTACCSEQ =0 TGTALL =0x7 TGTCPU =0x2 TGTCUDA =0 TGTCUDAX =0 TGTGPU =0x1 TGTMCUDA =0 TGTNKW =1 TGTOMP =0x2 TGTOMPCPU =0 TGTOMPGPU =0 TGTSEQ =0x4 TGTSPA =0x1 TGTSPACPU =0 TGTSPACXX =0 TGTSPAFTN =0 TGTSPAGPU =0 TIMEINIT =0 TIMER TIMPORT =import TNVVM =nvvmd TOOLKITFLAG TPVAL =-tp zen2 TRACEBACK =ON [ON OFF] TRACEBACKSW =OFF [ON OFF] USECUDAROOT =/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/ USEFLANG1 Substituting flang1 to fort1 USELLVMAS Using either the LLVM integrated assembler or llvm-mc =0 USENVOMPDEVSTATICLIB =0 USENVOMPNVCCBITCODE =1 USENVVM70 =0 USEOTHEROMPLIB =0 USEPGICUDA =0 USER_SET_CUDA USER_SET_CUDA_HOME =0 USERASMPPSUFFIX USERASMSUFFIX USERCPPSUFFIX USERCSUFFIX USERCUFPPSUFFIX USERCUFSUFFIX USERCUSUFFIX USERF77PPSUFFIX USERF77SUFFIX USERF90PPSUFFIX USERF90SUFFIX USERLIBSUFFIX USEROBJSUFFIX USESSELIBS =1 USETPVAL =-tp zen2 USRDDEF =-D__PGLLVM__ -D__NVCOMPILER_LLVM__ -D__extension__= USRDEFDEF =-def __PGLLVM__ -def __NVCOMPILER_LLVM__ -def __extension__= USRFTNRTL Additional fortran runtime libraries USRINC USRRPATH USRSTDINC VAES =0 VECT Vector optimization level =48 VECTSSE VERBOSE Display each command as it is executed VERSION Display version of driver and tools VERSIONJSON VERSIONTXT VERYVERBOSE VLV =0 VPCLMULQDQ =0 WINCONV =nvdd WRSTR =-x 119 0x20 X86_64 =1 X86_64TARGET =YES XOP =0 XSAVE =1 XSAVEC =1 XSAVEOPT =1 XSAVES =1 XTRAS =-x 49 0x100 ZCDEF ZCLIBS =-lzceh -lgcc_eh --eh-frame-hdr ZEROINIT =0 ZNVER2 Known Phases: printcudaversion phase: Extract subprograms to an extract library for later inlining: C++ Phase 1 Fortran Compiler phase 1 Preprocess files: Preprocess any file Compile or Assemble source files: C++ Phase 1 Fortran Compiler phase 1 Fortran Compiler phase 2 LLVM assembler Assembler Preprocess assembler files IPA Linker: IPA Propagation Link object files to executable: Linker Trying FC compiler flag -PIC for PIC code Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -PIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: nvfortran-Error-Unknown switch: -PIC Source: program main end Output from compiling with -g -mp=gpu -PIC nvfortran-Error-Unknown switch: -PIC PETSc Error: No output file produced Rejecting compiler flag -PIC due to nonzero status from link Rejected FC compiler flag -PIC because shared linker cannot handle it Trying FC compiler flag -qPIC for PIC code Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -qPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: nvfortran-Error-Unknown switch: -qPIC Source: program main end Output from compiling with -g -mp=gpu -qPIC nvfortran-Error-Unknown switch: -qPIC PETSc Error: No output file produced Rejecting compiler flag -qPIC due to nonzero status from link Rejected FC compiler flag -qPIC because shared linker cannot handle it Trying FC compiler flag -KPIC for PIC code Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -g -mp=gpu -KPIC Added FC compiler flag -KPIC ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/libconftest.so -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Accepted FC compiler flag -KPIC for PIC code Trying CUDA compiler flag -Xcompiler -fPIC for PIC code Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-AzrmlS/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -fPIC Added CUDA compiler flag -Xcompiler -fPIC ===== Checking linker Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-AzrmlS/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/libconftest.so -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Accepted CUDA compiler flag -Xcompiler -fPIC for PIC code ============================================================================================= TESTING: checkSharedLinkerPaths from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1866) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: uname -s stdout: Linux Executing: cc -V stdout: nvc 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. Trying C linker flag -Wl,-rpath, Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -Wl,-rpath,/global/u2/m/madams/petsc -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/global/u2/m/madams/petsc Executing: uname -s stdout: Linux Executing: cc -V stdout: nvc 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. Trying Cxx linker flag -Wl,-rpath, Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -Wl,-rpath,/global/u2/m/madams/petsc -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/global/u2/m/madams/petsc Executing: uname -s stdout: Linux Executing: cc -V stdout: nvc 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. Trying FC linker flag -Wl,-rpath, Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: ftn -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -Wl,-rpath,/global/u2/m/madams/petsc -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/global/u2/m/madams/petsc Executing: uname -s stdout: Linux Executing: cc -V stdout: nvc 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. Trying CUDA linker flag -Wl,-rpath, Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-AzrmlS/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -Xcompiler -fPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Valid CUDA linker flag -Wl,-rpath,/global/u2/m/madams/petsc ============================================================================================= TESTING: checkLibC from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1905) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/libconftest.so -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ============================================================================================= TESTING: checkDynamicLinker from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1951) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } void dummy(void) {_check_dlopen(); _check_dlsym(); _check_dlclose();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker cc using flags ['-shared'] Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/cc...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/cc...not found Checking for program /global/common/software/nersc/bin/cc...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/cc...found Defined make macro "DYNAMICLINKER" to "cc" Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -ldl Valid C linker flag -shared ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/libconftest.so -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -ldl ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-AzrmlS/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -ldl Using dynamic linker cc with flags ['-shared'] and library extension so ============================================================================================= TESTING: checkPragma from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1409) Check for all available applicable languages whether they complain (including warnings!) about potentially unknown pragmas Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -Wunknown-pragmas -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: nvc++-Error-Unknown switch: -Wunknown-pragmas Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -Wunknown-pragmas nvc++-Error-Unknown switch: -Wunknown-pragmas PETSc Error: No output file produced Rejecting compiler flag -Wunknown-pragmas due to nonzero status from link Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -Wunknown-pragmas /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: nvc-Error-Unknown switch: -Wunknown-pragmas Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -Wunknown-pragmas nvc-Error-Unknown switch: -Wunknown-pragmas PETSc Error: No output file produced Rejecting compiler flag -Wunknown-pragmas due to nonzero status from link Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -Xcompiler -fPIC -Wunknown-pragmas -Wno-deprecated-gpu-targets /tmp/petsc-AzrmlS/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option '-Wunknown-pragmas' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -fPIC -Wunknown-pragmas nvcc fatal : Unknown option '-Wunknown-pragmas' PETSc Error: No output file produced Rejecting compiler flag -Wunknown-pragmas due to nonzero status from link ============================================================================================= TESTING: output from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:2000) Output module data as defines and substitutions Substituting "CC" with "cc" Substituting "CFLAGS" with "-g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "cc -E" Substituting "CPPFLAGS" with "" Substituting "CUDAC" with "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc" Substituting "CUDAFLAGS" with " -Xcompiler -fPIC" Substituting "CUDAPP" with "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -E" Substituting "CUDAPPFLAGS" with "-Wno-deprecated-gpu-targets" Substituting "CXX" with "CC" Substituting "CXX_CXXFLAGS" with " -KPIC" Substituting "CXXFLAGS" with "-g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "CC -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "ftn" Substituting "FFLAGS" with "-g -mp=gpu -KPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "FPP" with "ftn -E" Substituting "FPPFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 28.490083 ============================================================================================= TESTING: configureIndexSize from PETSc.options.indexTypes(/global/u2/m/madams/petsc/config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.002242 ============================================================================================= TESTING: configureCompilerFlags from config.compilerFlags(/global/u2/m/madams/petsc/config/BuildSystem/config/compilerFlags.py:82) Get the default compiler flags Executing: cc --version stdout: nvc 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. getCompilerVersion: cc nvc 21.9-0 64-bit target on x86-64 Linux -tp zen-64 Defined make macro "C_VERSION" to "nvc 21.9-0 64-bit target on x86-64 Linux -tp zen-64 " Ignoring default options which were overridden using --CFLAGS -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu Optimization options found in CFLAGS. Skipping setting defaults Executing: CC --version stdout: nvc++ 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. getCompilerVersion: CC nvc++ 21.9-0 64-bit target on x86-64 Linux -tp zen-64 Defined make macro "Cxx_VERSION" to "nvc++ 21.9-0 64-bit target on x86-64 Linux -tp zen-64 " Ignoring default options which were overridden using --CXXFLAGS -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu Optimization options found in CXXFLAGS. Skipping setting defaults Executing: ftn --version stdout: nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. getCompilerVersion: ftn nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 Defined make macro "FC_VERSION" to "nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 " Ignoring default options which were overridden using --FFLAGS -g -mp=gpu Optimization options found in FFLAGS. Skipping setting defaults Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc --version stdout: nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2020 NVIDIA Corporation Built on Wed_Jul_22_19:09:09_PDT_2020 Cuda compilation tools, release 11.0, V11.0.221 Build cuda_11.0_bu.TC445_37.28845127_0 getCompilerVersion: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc nvcc: NVIDIA (R) Cuda compiler driver Defined make macro "CUDA_VERSION" to "nvcc: NVIDIA (R) Cuda compiler driver" Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc --help | head -n 20 stdout: Usage : nvcc [options] Options for specifying the compilation phase ============================================ More exactly, this option specifies up to which stage the input files must be compiled, according to the following compilation trajectories for different input file types: .c/.cc/.cpp/.cxx : preprocess, compile, link .o : link .i/.ii : compile, link .cu : preprocess, cuda frontend, PTX assemble, merge with host C code, compile, link .gpu : cicc compile into cubin .ptx : PTX assemble into cubin. --cuda (-cuda) Compile all .cu input files to .cu.cpp.ii output. --cubin (-cubin) Compile all .cu/.gpu/.ptx input files to device-only .cubin files. This Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc --help | head -n 500 Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc --help | head -n 20 stdout: Usage : nvcc [options] Options for specifying the compilation phase ============================================ More exactly, this option specifies up to which stage the input files must be compiled, according to the following compilation trajectories for different input file types: .c/.cc/.cpp/.cxx : preprocess, compile, link .o : link .i/.ii : compile, link .cu : preprocess, cuda frontend, PTX assemble, merge with host C code, compile, link .gpu : cicc compile into cubin .ptx : PTX assemble into cubin. --cuda (-cuda) Compile all .cu input files to .cu.cpp.ii output. --cubin (-cubin) Compile all .cu/.gpu/.ptx input files to device-only .cubin files. This Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc --version stdout: nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2020 NVIDIA Corporation Built on Wed_Jul_22_19:09:09_PDT_2020 Cuda compilation tools, release 11.0, V11.0.221 Build cuda_11.0_bu.TC445_37.28845127_0 Detected NVCC compiler Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc --help | head -n 20 stdout: Usage : nvcc [options] Options for specifying the compilation phase ============================================ More exactly, this option specifies up to which stage the input files must be compiled, according to the following compilation trajectories for different input file types: .c/.cc/.cpp/.cxx : preprocess, compile, link .o : link .i/.ii : compile, link .cu : preprocess, cuda frontend, PTX assemble, merge with host C code, compile, link .gpu : cicc compile into cubin .ptx : PTX assemble into cubin. --cuda (-cuda) Compile all .cu input files to .cu.cpp.ii output. --cubin (-cubin) Compile all .cu/.gpu/.ptx input files to device-only .cubin files. This Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc --help | head -n 500 Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc --help | head -n 20 stdout: Usage : nvcc [options] Options for specifying the compilation phase ============================================ More exactly, this option specifies up to which stage the input files must be compiled, according to the following compilation trajectories for different input file types: .c/.cc/.cpp/.cxx : preprocess, compile, link .o : link .i/.ii : compile, link .cu : preprocess, cuda frontend, PTX assemble, merge with host C code, compile, link .gpu : cicc compile into cubin .ptx : PTX assemble into cubin. --cuda (-cuda) Compile all .cu input files to .cu.cpp.ii output. --cubin (-cubin) Compile all .cu/.gpu/.ptx input files to device-only .cubin files. This Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc --version stdout: nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2020 NVIDIA Corporation Built on Wed_Jul_22_19:09:09_PDT_2020 Cuda compilation tools, release 11.0, V11.0.221 Build cuda_11.0_bu.TC445_37.28845127_0 Detected NVCC compiler ============================================================================================= ***** WARNING: Using default optimization CUDA flags -O3 You might consider manually setting optimal optimization flags for your system with CUDAOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples ============================================================================================= Trying CUDA compiler flag -O3 Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -Xcompiler -fPIC -O3 -Wno-deprecated-gpu-targets /tmp/petsc-AzrmlS/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -fPIC -O3 Added CUDA compiler flag -O3 ============================================================================================= TESTING: checkIntelHardwareSupport from config.compilerFlags(/global/u2/m/madams/petsc/config/BuildSystem/config/compilerFlags.py:173) Use Linux/MacOS commands to determine what operations the hardware supports Executing: lscpu stdout: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian Address sizes: 48 bits physical, 48 bits virtual CPU(s): 256 On-line CPU(s) list: 0-255 Thread(s) per core: 2 Core(s) per socket: 64 Socket(s): 2 NUMA node(s): 2 Vendor ID: AuthenticAMD CPU family: 25 Model: 1 Model name: AMD EPYC 7713 64-Core Processor Stepping: 1 CPU MHz: 1841.248 CPU max MHz: 2000.0000 CPU min MHz: 1500.0000 BogoMIPS: 3992.63 Virtualization: AMD-V L1d cache: 32K L1i cache: 32K L2 cache: 512K L3 cache: 32768K NUMA node0 CPU(s): 0-63,128-191 NUMA node1 CPU(s): 64-127,192-255 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl nonstop_tsc cpuid extd_apicid aperfmperf pni pclmulqdq monitor ssse3 fma cx16 pcid sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm cmp_legacy svm extapic cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw ibs skinit wdt tce topoext perfctr_core perfctr_nb bpext perfctr_llc mwaitx cpb cat_l3 cdp_l3 invpcid_single hw_pstate ssbd mba ibrs ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 invpcid cqm rdt_a rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves cqm_llc cqm_occup_llc cqm_mbm_total cqm_mbm_local clzero irperf xsaveerptr wbnoinvd amd_ppin arat npt lbrv svm_lock nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload vgif umip pku ospke vaes vpclmulqdq rdpid overflow_recov succor smca ============================================================================================= TESTING: checkCompilerMacros from config.compilerFlags(/global/u2/m/madams/petsc/config/BuildSystem/config/compilerFlags.py:164) Save the list of CPP macros defined by the C and C++ compiler, does not work for all compilers Executing: cc -c -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilerFlags -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilerFlags/conftest.c -E -dM stdout: #define __SIGNED_CHARS__ 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __STDC__ 1 #define __STDC_VERSION__ 201112L #define __STDC_UTF_16__ 1 #define __STDC_UTF_32__ 1 #define __STDC_HOSTED__ 1 #define __EDG__ 1 #define __EDG_VERSION__ 602 #define __EDG_SIZE_TYPE__ unsigned long #define __EDG_PTRDIFF_TYPE__ long #define __PGIC__ 21 #define __PGIC_MINOR__ 9 #define __PGIC_PATCHLEVEL__ 0 #define __NVCOMPILER_MAJOR__ 21 #define __NVCOMPILER_MINOR__ 9 #define __NVCOMPILER_PATCHLEVEL__ 0 #define __PGI_CLANG_SSE_INTRINSICS_VERSION__ 110000 #define __NVCOMPILER_CLANG_SSE_INTRINSICS_VERSION__ 110000 #define __GNUC_STDC_INLINE__ 1 #define __GNUC__ 7 #define __GNUC_MINOR__ 5 #define __GNUC_PATCHLEVEL__ 0 #define __VERSION__ "EDG gcc 7.5 mode" #define __CHAR_BIT__ 8 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __INTMAX_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __SIZEOF_SHORT__ 2 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_POINTER__ 8 #define __SIZEOF_SIZE_T__ 8 #define __SIZEOF_PTRDIFF_T__ 8 #define __SIZEOF_WINT_T__ 4 #define __SCHAR_WIDTH__ 8 #define __SHRT_WIDTH__ 16 #define __INT_WIDTH__ 32 #define __LONG_WIDTH__ 64 #define __LONG_LONG_WIDTH__ 64 #define __WCHAR_WIDTH__ 32 #define __SIZE_WIDTH__ 64 #define __PTRDIFF_WIDTH__ 64 #define __WINT_WIDTH__ 32 #define __INTMAX_WIDTH__ 64 #define __INT_LEAST8_WIDTH__ 8 #define __INT_LEAST16_WIDTH__ 16 #define __INT_LEAST32_WIDTH__ 32 #define __INT_LEAST64_WIDTH__ 64 #define __INT_FAST8_WIDTH__ 8 #define __INT_FAST16_WIDTH__ 64 #define __INT_FAST32_WIDTH__ 64 #define __INT_FAST64_WIDTH__ 64 #define __INTPTR_WIDTH__ 64 #define __FLT_RADIX__ 2 #define __FLT_EVAL_METHOD__ 0 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_MAX__ 3.40282347e+38F #define __FLT_EPSILON__ 1.19209290e-7F #define __FLT_MIN__ 1.17549435e-38F #define __FLT_DENORM_MIN__ 1.40129846e-45F #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_MAX__ 1.7976931348623157e+308 #define __DBL_EPSILON__ 2.2204460492503131e-16 #define __DBL_MIN__ 2.2250738585072014e-308 #define __DBL_DENORM_MIN__ 4.9406564584124654e-324 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __DECIMAL_DIG__ 21 #define __LDBL_DECIMAL_DIG__ 21 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __FLOAT128__ 1 #define __SIZEOF_FLOAT128__ 16 #define __GXX_WEAK__ 1 #define __FLT_HAS_DENORM__ 1 #define __DBL_HAS_DENORM__ 1 #define __LDBL_HAS_DENORM__ 1 #define _GLIBCXX_GTHREAD_USE_WEAK 0 #define __CHAR16_TYPE__ unsigned short #define __CHAR32_TYPE__ unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __UINT_FAST8_TYPE__ unsigned char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST64_TYPE__ long unsigned int #define __FLT_DECIMAL_DIG__ 9 #define __DBL_DECIMAL_DIG__ 17 #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __ATOMIC_RELAXED 0 #define __ATOMIC_CONSUME 1 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_SEQ_CST 5 #define unix 1 #define __unix__ 1 #define __PTRDIFF_TYPE__ long int #define __SIZE_TYPE__ unsigned long int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ unsigned long int #define __x86_64 1 #define __x86_64__ 1 #define __WCHAR_MAX__ 0x7fffffff #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define __WCHAR_TYPE__ int #define __linux__ 1 #define __unix 1 #define linux 1 #define __linux 1 #define __NO_MATH_INLINES 1 #define __LP64__ 1 #define __amd64 1 #define __amd64__ 1 #define __k8 1 #define __k8__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __SSE3__ 1 #define __SSSE3__ 1 #define __SSE4A__ 1 #define __ABM__ 1 #define __SSE4_1__ 1 #define __SSE4_2__ 1 #define __AVX__ 1 #define __AVX2__ 1 #define __F16C__ 1 #define __FMA__ 1 #define __XSAVE__ 1 #define __XSAVEOPT__ 1 #define __XSAVEC__ 1 #define __XSAVES__ 1 #define __POPCNT__ 1 #define __SHA__ 1 #define __AES__ 1 #define __PCLMUL__ 1 #define __CLFLUSHOPT__ 1 #define __FSGSBASE__ 1 #define __RDRND__ 1 #define __BMI__ 1 #define __BMI2__ 1 #define __MWAITX__ 1 #define __CLZERO__ 1 #define __PGI 1 #define __NVCOMPILER 1 #define _PGCG_SOURCE 1 #define __PGLLVM__ 1 #define __NVCOMPILER_LLVM__ 1 #define __extension__ #define PGI_TESLA_TARGET 1 #define __CRAY_X86_ROME 1 #define __CRAYXT_COMPUTE_LINUX_TARGET 1 #define LANDAU_DIM 2 #define LANDAU_MAX_SPECIES 10 #define LANDAU_MAX_Q 4 #define _PGI_HX 1 #define __PIC__ 1 #define __pgnu_vsn 70500 #define __PREPROCESS_ONLY__ 1 #define _OPENMP 202011 #define CUDA_VERSION 11000 #define _NVHPC_RDC 1 #define __gnu_linux__ 1 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR8_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __USER_LABEL_PREFIX__ #define _GLIBCXX_TXN_SAFE #define _GLIBCXX_TXN_SAFE_DYN #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __PGI_CPLUS_PREINCLUDE__ 1 #define __builtin_va_list __pgi_va_list #define __builtin_va_start(ap,param) (__builtin_pgi_va_start(ap, param)) #define __builtin_va_arg(ap,type) (*(type*)__builtin_pgi_va_arg(ap, (type*)0)) #define __builtin_va_copy(dst,src) ((dst)[0] = (src)[0]) #define __builtin_va_end(ap) ((void)0) Executing: CC -c -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilerFlags -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilerFlags/conftest.cc -E -dM stdout: #define __SIGNED_CHARS__ 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __cplusplus 201402L #define _WCHAR_T 1 #define __CHAR16_T_AND_CHAR32_T 1 #define _BOOL 1 #define __ARRAY_OPERATORS 1 #define __EXCEPTIONS 1 #define __RTTI 1 #define __PLACEMENT_DELETE 1 #define __EDG_RUNTIME_USES_NAMESPACES 1 #define __EDG_IA64_ABI 1 #define __cpp_initializer_lists 200806L #define __cpp_sized_deallocation 201309L #define __cpp_unicode_characters 200704L #define __cpp_aggregate_nsdmi 201304L #define __cpp_alias_templates 200704L #define __cpp_attributes 200809L #define __cpp_binary_literals 201304 #define __cpp_decltype 200707L #define __cpp_decltype_auto 201304L #define __cpp_delegating_constructors 200604L #define __cpp_exceptions 199711L #define __cpp_lambdas 200907L #define __cpp_nsdmi 200809L #define __cpp_raw_strings 200710L #define __cpp_ref_qualifiers 200710L #define __cpp_return_type_deduction 201304L #define __cpp_rtti 199711L #define __cpp_rvalue_references 200610L #define __cpp_threadsafe_static_init 200806L #define __cpp_unicode_literals 200710L #define __cpp_user_defined_literals 200809L #define __cpp_variable_templates 201304L #define __cpp_variadic_templates 200704L #define __cpp_constexpr 201304L #define __cpp_range_based_for 200907L #define __cpp_static_assert 200410 #define __cpp_init_captures 201304L #define __cpp_generic_lambdas 201304L #define __EDG_TYPE_TRAITS_ENABLED 1 #define __VARIADIC_TEMPLATES 1 #define __STDCPP_THREADS__ 1 #define __EDG_CONSTEXPR_ENABLED__ 1 #define __EDG__ 1 #define __EDG_VERSION__ 602 #define __EDG_SIZE_TYPE__ unsigned long #define __EDG_PTRDIFF_TYPE__ long #define __PGIC__ 21 #define __PGIC_MINOR__ 9 #define __PGIC_PATCHLEVEL__ 0 #define __NVCOMPILER_MAJOR__ 21 #define __NVCOMPILER_MINOR__ 9 #define __NVCOMPILER_PATCHLEVEL__ 0 #define __PGI_CLANG_SSE_INTRINSICS_VERSION__ 110000 #define __NVCOMPILER_CLANG_SSE_INTRINSICS_VERSION__ 110000 #define __GNUG__ 7 #define __GXX_RTTI 1 #define __GNUC_STDC_INLINE__ 1 #define __GNUC__ 7 #define __GNUC_MINOR__ 5 #define __GNUC_PATCHLEVEL__ 0 #define __VERSION__ "EDG g++ 7.5 mode" #define _GNU_SOURCE 1 #define __CHAR_BIT__ 8 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __INTMAX_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __SIZEOF_SHORT__ 2 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_POINTER__ 8 #define __SIZEOF_SIZE_T__ 8 #define __SIZEOF_PTRDIFF_T__ 8 #define __SIZEOF_WINT_T__ 4 #define __SCHAR_WIDTH__ 8 #define __SHRT_WIDTH__ 16 #define __INT_WIDTH__ 32 #define __LONG_WIDTH__ 64 #define __LONG_LONG_WIDTH__ 64 #define __WCHAR_WIDTH__ 32 #define __SIZE_WIDTH__ 64 #define __PTRDIFF_WIDTH__ 64 #define __WINT_WIDTH__ 32 #define __INTMAX_WIDTH__ 64 #define __INT_LEAST8_WIDTH__ 8 #define __INT_LEAST16_WIDTH__ 16 #define __INT_LEAST32_WIDTH__ 32 #define __INT_LEAST64_WIDTH__ 64 #define __INT_FAST8_WIDTH__ 8 #define __INT_FAST16_WIDTH__ 64 #define __INT_FAST32_WIDTH__ 64 #define __INT_FAST64_WIDTH__ 64 #define __INTPTR_WIDTH__ 64 #define __FLT_RADIX__ 2 #define __FLT_EVAL_METHOD__ 0 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_MAX__ 3.40282347e+38F #define __FLT_EPSILON__ 1.19209290e-7F #define __FLT_MIN__ 1.17549435e-38F #define __FLT_DENORM_MIN__ 1.40129846e-45F #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_MAX__ 1.7976931348623157e+308 #define __DBL_EPSILON__ 2.2204460492503131e-16 #define __DBL_MIN__ 2.2250738585072014e-308 #define __DBL_DENORM_MIN__ 4.9406564584124654e-324 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __DECIMAL_DIG__ 21 #define __LDBL_DECIMAL_DIG__ 21 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __FLOAT128__ 1 #define __SIZEOF_FLOAT128__ 16 #define __GXX_WEAK__ 1 #define __FLT_HAS_DENORM__ 1 #define __DBL_HAS_DENORM__ 1 #define __LDBL_HAS_DENORM__ 1 #define _GLIBCXX_GTHREAD_USE_WEAK 0 #define __CHAR16_TYPE__ unsigned short #define __CHAR32_TYPE__ unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __UINT_FAST8_TYPE__ unsigned char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST64_TYPE__ long unsigned int #define __FLT_DECIMAL_DIG__ 9 #define __DBL_DECIMAL_DIG__ 17 #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __ATOMIC_RELAXED 0 #define __ATOMIC_CONSUME 1 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_SEQ_CST 5 #define unix 1 #define __unix__ 1 #define __PTRDIFF_TYPE__ long int #define __SIZE_TYPE__ unsigned long int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ unsigned long int #define __x86_64 1 #define __x86_64__ 1 #define __WCHAR_MAX__ 0x7fffffff #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define __WCHAR_TYPE__ int #define __linux__ 1 #define __unix 1 #define linux 1 #define __linux 1 #define __NO_MATH_INLINES 1 #define __LP64__ 1 #define __amd64 1 #define __amd64__ 1 #define __k8 1 #define __k8__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __SSE3__ 1 #define __SSSE3__ 1 #define __SSE4A__ 1 #define __ABM__ 1 #define __SSE4_1__ 1 #define __SSE4_2__ 1 #define __AVX__ 1 #define __AVX2__ 1 #define __F16C__ 1 #define __FMA__ 1 #define __XSAVE__ 1 #define __XSAVEOPT__ 1 #define __XSAVEC__ 1 #define __XSAVES__ 1 #define __POPCNT__ 1 #define __SHA__ 1 #define __AES__ 1 #define __PCLMUL__ 1 #define __CLFLUSHOPT__ 1 #define __FSGSBASE__ 1 #define __RDRND__ 1 #define __BMI__ 1 #define __BMI2__ 1 #define __MWAITX__ 1 #define __CLZERO__ 1 #define __PGI 1 #define __NVCOMPILER 1 #define _PGCG_SOURCE 1 #define __PGLLVM__ 1 #define __NVCOMPILER_LLVM__ 1 #define __extension__ #define PGI_TESLA_TARGET 1 #define __CRAY_X86_ROME 1 #define __CRAYXT_COMPUTE_LINUX_TARGET 1 #define LANDAU_DIM 2 #define LANDAU_MAX_SPECIES 10 #define LANDAU_MAX_Q 4 #define _PGI_HX 1 #define __PIC__ 1 #define __pgnu_vsn 70500 #define __PREPROCESS_ONLY__ 1 #define _OPENMP 202011 #define CUDA_VERSION 11000 #define _NVHPC_RDC 1 #define __gnu_linux__ 1 #define __GXX_EXPERIMENTAL_CXX0X__ 1 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR8_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __USER_LABEL_PREFIX__ #define _GLIBCXX_TXN_SAFE #define _GLIBCXX_TXN_SAFE_DYN #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __PGI_CPLUS_PREINCLUDE__ 1 #define __builtin_va_list __pgi_va_list #define __builtin_va_start(ap,param) (__builtin_pgi_va_start(ap, param)) #define __builtin_va_arg(ap,type) (*(type*)__builtin_pgi_va_arg(ap, (type*)0)) #define __builtin_va_copy(dst,src) ((dst)[0] = (src)[0]) #define __builtin_va_end(ap) ((void)0) child config.compilerFlags 2.853312 Executing: cc --help | head -n 20 stdout: Usage: cc [options] file... Options: -[no-]add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options and new dtags are disabled. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]add-rpath-shared Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in specific versions of libraries at runtime for generated shared libraries. (Off by default.) -[no-]add-runpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options and new dtags are enabled. ============================================================================================= TESTING: checkC99Flag from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:1832) Check for -std=c99 or equivalent flag Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.setCompilers/conftest.c", line 7: warning: variable "x" was set but never used float x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC "/tmp/petsc-AzrmlS/config.setCompilers/conftest.c", line 7: warning: variable "x" was set but never used float x[2],y; ^ Accepted C99 compile flag: ============================================================================================= TESTING: checkRestrict from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:187) Check for the C/CXX restrict keyword Executing: cc -V stdout: nvc 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.compilers/conftest.c", line 5: warning: variable "x" was declared but never referenced float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCFormatting from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:448) Activate format string checking if using the GNU compilers ============================================================================================= TESTING: checkCInline from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:157) Check for C inline keyword ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ============================================================================================= TESTING: checkDynamicLoadFlag from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:459) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ============================================================================================= TESTING: checkCLibraries from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:251) Determines the libraries needed to link with C compiled code ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -ldl C libraries are not needed when using Fortran linker ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: CC -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: CC -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:1783) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -MMD -MP /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: nvc-Error-Unknown switch: -MP Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -MMD -MP nvc-Error-Unknown switch: -MP PETSc Error: No output file produced Rejecting compiler flag -MMD -MP due to nonzero status from link Rejected C compiler flag -MMD -MP Trying C compiler flag -MMD Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -MMD /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -MMD Rejected C compiler flag -MMD because no dependency file (/tmp/petsc-AzrmlS/config.setCompilers/conftest.d) was generated Trying C compiler flag -xMMD Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -xMMD /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: nvc-Error-Unknown switch: -xMMD Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -xMMD nvc-Error-Unknown switch: -xMMD PETSc Error: No output file produced Rejecting compiler flag -xMMD due to nonzero status from link Rejected C compiler flag -xMMD Trying C compiler flag -qmakedep=gcc Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -qmakedep=gcc /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: nvc-Error-Unknown switch: -qmakedep=gcc Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -qmakedep=gcc nvc-Error-Unknown switch: -qmakedep=gcc PETSc Error: No output file produced Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejected C compiler flag -qmakedep=gcc Trying C compiler flag -MD Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -MD /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -MD Rejected C compiler flag -MD because no dependency file (/tmp/petsc-AzrmlS/config.setCompilers/conftest.d) was generated Trying Cxx compiler flag -MMD -MP Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -MMD -MP /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: nvc++-Error-Unknown switch: -MP Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -KPIC -MMD -MP nvc++-Error-Unknown switch: -MP PETSc Error: No output file produced Rejecting compiler flag -MMD -MP due to nonzero status from link Rejected Cxx compiler flag -MMD -MP Trying Cxx compiler flag -MMD Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -MMD /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -KPIC -MMD Rejected Cxx compiler flag -MMD because no dependency file (/tmp/petsc-AzrmlS/config.setCompilers/conftest.d) was generated Trying Cxx compiler flag -xMMD Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -xMMD /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: nvc++-Error-Unknown switch: -xMMD Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -KPIC -xMMD nvc++-Error-Unknown switch: -xMMD PETSc Error: No output file produced Rejecting compiler flag -xMMD due to nonzero status from link Rejected Cxx compiler flag -xMMD Trying Cxx compiler flag -qmakedep=gcc Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -qmakedep=gcc /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: nvc++-Error-Unknown switch: -qmakedep=gcc Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -KPIC -qmakedep=gcc nvc++-Error-Unknown switch: -qmakedep=gcc PETSc Error: No output file produced Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejected Cxx compiler flag -qmakedep=gcc Trying Cxx compiler flag -MD Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -MD /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -KPIC -MD Rejected Cxx compiler flag -MD because no dependency file (/tmp/petsc-AzrmlS/config.setCompilers/conftest.d) was generated Trying CUDA compiler flag -MMD -MP Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -Xcompiler -fPIC -O3 -MMD -MP -Wno-deprecated-gpu-targets /tmp/petsc-AzrmlS/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option '-MP' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -fPIC -O3 -MMD -MP nvcc fatal : Unknown option '-MP' PETSc Error: No output file produced Rejecting compiler flag -MMD -MP due to nonzero status from link Rejected CUDA compiler flag -MMD -MP Trying CUDA compiler flag -MMD Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -Xcompiler -fPIC -O3 -MMD -Wno-deprecated-gpu-targets /tmp/petsc-AzrmlS/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -fPIC -O3 -MMD Defined make macro "CUDA_DEPFLAGS" to "-MMD" ============================================================================================= TESTING: checkDeviceHostCompiler from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:505) Set the host compiler (HC) of the device compiler (DC) to the HC unless the DC already explicitly sets its HC. This may be needed if the default HC used by the DC is ancient and PETSc uses a different HC (e.g., through --with-cxx=...). checkDeviceHostCompiler: checking /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc accepts host compiler CC Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -Xcompiler -fPIC -O3 -ccbin CC -Wno-deprecated-gpu-targets /tmp/petsc-AzrmlS/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 2 stderr: "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/include/crt/host_config.h", line 118: catastrophic error: #error directive: -- unsupported pgc++ configuration! Only pgc++ 18, 19 and 20 are supported! #error -- unsupported pgc++ configuration! Only pgc++ 18, 19 and 20 are supported! ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-AzrmlS/config.setCompilers/conftest.cu". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -fPIC -O3 -ccbin CC "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/include/crt/host_config.h", line 118: catastrophic error: #error directive: -- unsupported pgc++ configuration! Only pgc++ 18, 19 and 20 are supported! #error -- unsupported pgc++ configuration! Only pgc++ 18, 19 and 20 are supported! ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-AzrmlS/config.setCompilers/conftest.cu". Compilation terminated. PETSc Error: No output file produced Rejecting compiler flag -ccbin CC due to nonzero status from link ============================================================================================= TESTING: checkCxxDialect from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:528) Determine the CXX dialect supported by the compiler(language) [and correspoding compiler option - if any]. isGNUish indicates if the compiler is gnu compliant (i.e. clang). -with--dialect can take options: auto: use highest supported dialect configure can determine [[c|gnu][xx|++]]20: not yet supported [[c|gnu][xx|++]]17: gnu++17 or c++17 [[c|gnu][xx|++]]14: gnu++14 or c++14 [[c|gnu][xx|++]]11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default On return this function sets the following values: - if needed, appends the relevant CXX dialect flag to compiler flags - self.cxxDialectRange = (minSupportedDialect,maxSupportedDialect) (e.g. ('c++03','c++14')) - self.addDefine('HAVE_{LANG}_DIALECT_CXX{DIALECT_NUM}',1) for every supported dialect - self.lang+'dialect' = 'c++'+maxDialectNumber (e.g. 'c++14') but ONLY if the user specifically requests a dialect version, otherwise this is not set or raises a RuntimeException if either: - The user has set both the --with-dialect=[...] configure options and -std=[...] in their compiler flags - The combination of specifically requested packages cannnot all be compiled with the same flag - The compiler does not support at minimum -std=c++03 checkCxxDialect: checking C++ dialect version for language "CUDA" using compiler "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc" checkCxxDialect: PETSc believes compiler (/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc) is NOT gnu-ish checkCxxDialect: configure option after sanitization: --with-cuda-dialect=AUTO checkCxxDialect: user has NOT explicitly selected dialect AUTO for CUDA checkCxxDialect: Have potential flag pool: - -std=c++17 - -std=c++14 - -std=c++11 - -std=c++03 checkCxxDialect: checking CXX 17 for CUDA with -std=c++17 Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -Xcompiler -fPIC -O3 -std=c++17 -Wno-deprecated-gpu-targets /tmp/petsc-AzrmlS/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" // c++03 includes #include template void ignore(const T&) { } // silence unused variable warnings class valClass { public: int i; valClass() { i = 3; } valClass(int x) : i(x) { } }; // c++11 includes #include #include #include class MoveSemantics { std::unique_ptr _member; public: MoveSemantics(int val = 4) : _member(new valClass(val)) { } MoveSemantics& operator=(MoveSemantics &&other) noexcept = default; }; template constexpr T Cubed( T x ) { return x*x*x; } auto trailing(int x) -> int { return x+2; } enum class Shapes : int {SQUARE,CIRCLE}; template struct Tuple { }; using PetscErrorCode = int; // c++14 includes #include template constexpr T pi = T(3.1415926535897932385L); // variable template // c++17 includes #include #include #include #include [[nodiscard]] int nodiscardFunc() { return 0; } struct S2 { // static inline member variables since c++17 static inline int var = 8675309; void f(int i); }; void S2::f(int i) { // until c++17: Error: invalid syntax // since c++17: OK: captures the enclosing S2 by copy auto lmbd = [=, *this] { std::cout << i << " " << this->var << std::endl; }; lmbd(); } int main() { // c++03 body valClass cls = valClass(); // value initialization int i = cls.i; // i is not declared const const int& rci = i; // but rci is const_cast(rci) = 4; // c++11 body constexpr int big_value = 1234; decltype(big_value) ierr = big_value; auto ret = trailing(ierr); MoveSemantics bob; MoveSemantics alice; alice = std::move(bob);ignore(alice); Tuple<> t0;ignore(t0); Tuple t1;ignore(t1); Tuple t2;ignore(t2); std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x << ret << std::endl; // c++14 body auto ptr = std::make_unique(); *ptr = 1; std::cout << pi << std::endl; constexpr const std::complex const_i(0.0,1.0); auto lambda = [](auto x, auto y) { return x + y; }; std::cout << lambda(3,4) << std::real(const_i) << std::endl; // c++17 body std::variant v,w; v = 42; // v contains int int ivar = std::get(v); w = std::get<0>(v); // same effect as the previous line w = v; // same effect as the previous line S2 foo; foo.f(ivar); if constexpr (std::is_arithmetic_v) std::cout << "c++17" << std::endl; typedef std::integral_constant squareShape; // static_assert with no message since c++17 static_assert(std::is_same_v); auto val = nodiscardFunc();ignore(val); ; return 0; } Output from compiling with -Xcompiler -fPIC -O3 -std=c++17 Added CUDA compiler flag -std=c++17 checkCxxDialect: success using -std=c++17 for CUDA dialect c++17, set new cxxDialectRange: ('c++03', 'c++17') Defined "HAVE_CUDA_DIALECT_CXX03" to "1" Defined "HAVE_CUDA_DIALECT_CXX11" to "1" Defined "HAVE_CUDA_DIALECT_CXX14" to "1" Defined "HAVE_CUDA_DIALECT_CXX17" to "1" Executing: CC --help | head -n 20 stdout: Usage: CC [options] file... Options: -[no-]add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options and new dtags are disabled. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]add-rpath-shared Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in specific versions of libraries at runtime for generated shared libraries. (Off by default.) -[no-]add-runpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options and new dtags are enabled. ============================================================================================= TESTING: checkRestrict from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:187) Check for the C/CXX restrict keyword Executing: cc -V stdout: nvc 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. ===== Checking compiler Executing: CC -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.compilers/conftest.cc", line 5: warning: variable "x" was declared but never referenced float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" Executing: CC --help | head -n 500 ============================================================================================= TESTING: checkCxxDialect from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:528) Determine the CXX dialect supported by the compiler(language) [and correspoding compiler option - if any]. isGNUish indicates if the compiler is gnu compliant (i.e. clang). -with--dialect can take options: auto: use highest supported dialect configure can determine [[c|gnu][xx|++]]20: not yet supported [[c|gnu][xx|++]]17: gnu++17 or c++17 [[c|gnu][xx|++]]14: gnu++14 or c++14 [[c|gnu][xx|++]]11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default On return this function sets the following values: - if needed, appends the relevant CXX dialect flag to compiler flags - self.cxxDialectRange = (minSupportedDialect,maxSupportedDialect) (e.g. ('c++03','c++14')) - self.addDefine('HAVE_{LANG}_DIALECT_CXX{DIALECT_NUM}',1) for every supported dialect - self.lang+'dialect' = 'c++'+maxDialectNumber (e.g. 'c++14') but ONLY if the user specifically requests a dialect version, otherwise this is not set or raises a RuntimeException if either: - The user has set both the --with-dialect=[...] configure options and -std=[...] in their compiler flags - The combination of specifically requested packages cannnot all be compiled with the same flag - The compiler does not support at minimum -std=c++03 checkCxxDialect: checking C++ dialect version for language "CXX" using compiler "CC" checkCxxDialect: PETSc believes compiler (CC) is NOT gnu-ish checkCxxDialect: configure option after sanitization: --with-cxx-dialect=AUTO checkCxxDialect: user has NOT explicitly selected dialect AUTO for CXX checkCxxDialect: Have potential flag pool: - -std=c++17 - -std=c++14 - -std=c++11 - -std=c++03 checkCxxDialect: checking CXX 17 for Cxx with -std=c++17 Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" // c++03 includes #include template void ignore(const T&) { } // silence unused variable warnings class valClass { public: int i; valClass() { i = 3; } valClass(int x) : i(x) { } }; // c++11 includes #include #include #include class MoveSemantics { std::unique_ptr _member; public: MoveSemantics(int val = 4) : _member(new valClass(val)) { } MoveSemantics& operator=(MoveSemantics &&other) noexcept = default; }; template constexpr T Cubed( T x ) { return x*x*x; } auto trailing(int x) -> int { return x+2; } enum class Shapes : int {SQUARE,CIRCLE}; template struct Tuple { }; using PetscErrorCode = int; // c++14 includes #include template constexpr T pi = T(3.1415926535897932385L); // variable template // c++17 includes #include #include #include #include [[nodiscard]] int nodiscardFunc() { return 0; } struct S2 { // static inline member variables since c++17 static inline int var = 8675309; void f(int i); }; void S2::f(int i) { // until c++17: Error: invalid syntax // since c++17: OK: captures the enclosing S2 by copy auto lmbd = [=, *this] { std::cout << i << " " << this->var << std::endl; }; lmbd(); } int main() { // c++03 body valClass cls = valClass(); // value initialization int i = cls.i; // i is not declared const const int& rci = i; // but rci is const_cast(rci) = 4; // c++11 body constexpr int big_value = 1234; decltype(big_value) ierr = big_value; auto ret = trailing(ierr); MoveSemantics bob; MoveSemantics alice; alice = std::move(bob);ignore(alice); Tuple<> t0;ignore(t0); Tuple t1;ignore(t1); Tuple t2;ignore(t2); std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x << ret << std::endl; // c++14 body auto ptr = std::make_unique(); *ptr = 1; std::cout << pi << std::endl; constexpr const std::complex const_i(0.0,1.0); auto lambda = [](auto x, auto y) { return x + y; }; std::cout << lambda(3,4) << std::real(const_i) << std::endl; // c++17 body std::variant v,w; v = 42; // v contains int int ivar = std::get(v); w = std::get<0>(v); // same effect as the previous line w = v; // same effect as the previous line S2 foo; foo.f(ivar); if constexpr (std::is_arithmetic_v) std::cout << "c++17" << std::endl; typedef std::integral_constant squareShape; // static_assert with no message since c++17 static_assert(std::is_same_v); auto val = nodiscardFunc();ignore(val); ; return 0; } Output from compiling with -KPIC -std=c++17 Added Cxx compiler flag -std=c++17 checkCxxDialect: success using -std=c++17 for Cxx dialect c++17, set new cxxDialectRange: ('c++03', 'c++17') Defined "HAVE_CXX_DIALECT_CXX03" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX17" to "1" ============================================================================================= TESTING: checkCxxOptionalExtensions from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:478) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu ============================================================================================= TESTING: checkCxxInline from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:172) Check for C++ inline keyword ===== Checking compiler Executing: CC -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ============================================================================================= TESTING: checkCxxComplexFix from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:876) Determine if the CXX compiler supports utilities provided by petsccxxcomplexfix.h ===== Checking compiler Executing: CC -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define Type int #define PetscReal double #define PetscComplex std::complex /* The two lines, from petsccxxcomplexfix.h, can cause the combination "C++14 + GCC-4.x libstdc++ library" to fail, complaining imag() is not marked const. If the compiler can compile these two lines, it should be able to compile other lines. */ static inline PetscComplex operator-(const Type& lhs, const PetscComplex& rhs) { return PetscReal(lhs) - const_cast(rhs); } static inline PetscComplex operator/(const Type& lhs, const PetscComplex& rhs) { return PetscReal(lhs) / const_cast(rhs); } int main() { Type x = 2; PetscComplex y(1.0,1.0),z,w; z = x - y; w = x / y; std::cout << z << w; ; return 0; } the CXX compiler supports petsccxxcomplexfix.h Defined "HAVE_CXX_COMPLEX_FIX" to "1" ============================================================================================= TESTING: checkCxxLibraries from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:905) Determines the libraries needed to link with C++ from C and Fortran ===== Checking compiler Executing: CC -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: cc -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `__sti___46__tmp_petsc_AzrmlS_config_compilers_conftest_cc__Z4asubv': nvc++D5kExm2CMAhC.ll:(.text+0x44): undefined reference to `std::ios_base::Init::Init()' /usr/bin/ld: nvc++D5kExm2CMAhC.ll:(.text+0x4b): undefined reference to `std::ios_base::Init::~Init()' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `asub()': /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_get_exception_ptr' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `std::cout' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/include/c++/7/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `std::vector >::vector()': /usr/include/c++/7/bits/stl_vector.h:263: undefined reference to `__cxa_begin_catch' /usr/bin/ld: /usr/include/c++/7/bits/stl_vector.h:263: undefined reference to `std::terminate()' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /usr/include/c++/7/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/include/c++/7/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, long)' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o:(.data+0x1d0): undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `__sti___46__tmp_petsc_AzrmlS_config_compilers_conftest_cc__Z4asubv': nvc++D5kExm2CMAhC.ll:(.text+0x44): undefined reference to `std::ios_base::Init::Init()' /usr/bin/ld: nvc++D5kExm2CMAhC.ll:(.text+0x4b): undefined reference to `std::ios_base::Init::~Init()' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `asub()': /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_get_exception_ptr' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `std::cout' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/include/c++/7/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `std::vector >::vector()': /usr/include/c++/7/bits/stl_vector.h:263: undefined reference to `__cxa_begin_catch' /usr/bin/ld: /usr/include/c++/7/bits/stl_vector.h:263: undefined reference to `std::terminate()' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /usr/include/c++/7/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/include/c++/7/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, long)' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o:(.data+0x1d0): undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `__sti___46__tmp_petsc_AzrmlS_config_compilers_conftest_cc__Z4asubv': nvc++D5kExm2CMAhC.ll:(.text+0x44): undefined reference to `std::ios_base::Init::Init()' /usr/bin/ld: nvc++D5kExm2CMAhC.ll:(.text+0x4b): undefined reference to `std::ios_base::Init::~Init()' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `asub()': /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_get_exception_ptr' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `std::cout' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/include/c++/7/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `std::vector >::vector()': /usr/include/c++/7/bits/stl_vector.h:263: undefined reference to `__cxa_begin_catch' /usr/bin/ld: /usr/include/c++/7/bits/stl_vector.h:263: undefined reference to `std::terminate()' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /usr/include/c++/7/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/include/c++/7/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, long)' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o:(.data+0x1d0): undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' pgacclnk: child process exit status 1: /usr/bin/ld: Executing: uname -s stdout: Linux Executing: cc --version stdout: nvc 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. ===== Checking compiler Executing: CC -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: cc -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lstdc++ -ldl compilers: C++ requires -lstdc++ to link with C compiler ===== Checking compiler Executing: CC -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lstdc++ -ldl C++ libraries are not needed when using FC linker Executing: CC -V stdout: nvc++ 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. ============================================================================================= TESTING: checkFortranNameMangling from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:1247) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Executing: ftn --version stdout: nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. Defined "FORTRAN_CHARLEN_T" to "int" ============================================================================================= TESTING: checkFortranNameManglingDouble from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:1285) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.o: in function `MAIN_': /tmp/petsc-AzrmlS/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.o: in function `MAIN_': /tmp/petsc-AzrmlS/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/conftest.o: in function `MAIN_': /tmp/petsc-AzrmlS/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' pgacclnk: child process exit status 1: /usr/bin/ld: ============================================================================================= TESTING: checkFortranLibraries from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:1295) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main #include call MPI_Allreduce() end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o -lstdc++ -ldl ===== Checking compiler Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' call MPI_Allreduce() return end ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `asub_': /tmp/petsc-AzrmlS/config.compilers/conftest.F90:3: undefined reference to `mpi_allreduce_' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `asub_': /tmp/petsc-AzrmlS/config.compilers/conftest.F90:3: undefined reference to `mpi_allreduce_' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.compilers/confc.o: in function `asub_': /tmp/petsc-AzrmlS/config.compilers/conftest.F90:3: undefined reference to `mpi_allreduce_' pgacclnk: child process exit status 1: /usr/bin/ld: Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -v -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o -lstdc++ -ldl stdout: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/nvdd -cudaallowundefgbls -dcuda /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/usr/lib64 -L/usr/lib64/gcc/x86_64-suse-linux/7 /tmp/petsc-AzrmlS/config.compilers/conftest.o -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_cuda.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_mp.o -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc -lc -lgcc_s -dolink -cuda11000 -computecap 80 -o /tmp/pgcudazDqElcnrGgxw.cubin /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/nvdd -fatobj /tmp/pgcudafatHDqEJtvRR6V6.o -o /tmp/pgcudafatHDqEJtvRR6V6.o -cuda11000 -dcuda /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 -init=ctxrel -sm 80 /tmp/pgcudazDqElcnrGgxw.cubin /usr/bin/ld /usr/lib64/crt1.o /usr/lib64/crti.o /tmp/pgcudafatHDqEJtvRR6V6.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/usr/lib64 -L/usr/lib64/gcc/x86_64-suse-linux/7 /tmp/petsc-AzrmlS/config.compilers/conftest.o -lstdc++ -ldl -rpath=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -no-as-needed -ldarshan -lz --as-needed -lsci_nvidia_mpi_mp --no-as-needed --as-needed -lsci_nvidia_mp --no-as-needed -ldl --as-needed -lmpifort_nvidia --no-as-needed --as-needed -lmpi_nvidia --no-as-needed --as-needed -ldsmml --no-as-needed -lxpmem --disable-new-dtags -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -rpath /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 -o /tmp/petsc-AzrmlS/config.compilers/conftest -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_cuda.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_mp.o -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 --as-needed -lnvhpcman --no-as-needed -ldl -lcudadevice -lnvf -lnvomp -ldl --as-needed -lnvhpcatm -latomic --no-as-needed -lpthread --start-group -lnvcpumath-avx2 -lnsnvc -lnvc --end-group -lrt -lpthread -lm -lgcc -lc -lgcc -lgcc_s /usr/lib64/gcc/x86_64-suse-linux/7/crtend.o /usr/lib64/crtn.o unlink /tmp/pgcudafatHDqEJtvRR6V6.o unlink /tmp/pgcudazDqElcnrGgxw.cubin Possible ERROR while running linker: stdout: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/nvdd -cudaallowundefgbls -dcuda /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/usr/lib64 -L/usr/lib64/gcc/x86_64-suse-linux/7 /tmp/petsc-AzrmlS/config.compilers/conftest.o -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_cuda.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_mp.o -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc -lc -lgcc_s -dolink -cuda11000 -computecap 80 -o /tmp/pgcudazDqElcnrGgxw.cubin /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/nvdd -fatobj /tmp/pgcudafatHDqEJtvRR6V6.o -o /tmp/pgcudafatHDqEJtvRR6V6.o -cuda11000 -dcuda /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 -init=ctxrel -sm 80 /tmp/pgcudazDqElcnrGgxw.cubin /usr/bin/ld /usr/lib64/crt1.o /usr/lib64/crti.o /tmp/pgcudafatHDqEJtvRR6V6.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/usr/lib64 -L/usr/lib64/gcc/x86_64-suse-linux/7 /tmp/petsc-AzrmlS/config.compilers/conftest.o -lstdc++ -ldl -rpath=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -no-as-needed -ldarshan -lz --as-needed -lsci_nvidia_mpi_mp --no-as-needed --as-needed -lsci_nvidia_mp --no-as-needed -ldl --as-needed -lmpifort_nvidia --no-as-needed --as-needed -lmpi_nvidia --no-as-needed --as-needed -ldsmml --no-as-needed -lxpmem --disable-new-dtags -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -rpath /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 -o /tmp/petsc-AzrmlS/config.compilers/conftest -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_cuda.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_mp.o -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 --as-needed -lnvhpcman --no-as-needed -ldl -lcudadevice -lnvf -lnvomp -ldl --as-needed -lnvhpcatm -latomic --no-as-needed -lpthread --start-group -lnvcpumath-avx2 -lnsnvc -lnvc --end-group -lrt -lpthread -lm -lgcc -lc -lgcc -lgcc_s /usr/lib64/gcc/x86_64-suse-linux/7/crtend.o /usr/lib64/crtn.o unlink /tmp/pgcudafatHDqEJtvRR6V6.o unlink /tmp/pgcudazDqElcnrGgxw.cubinstderr: Export PGI_CURR_CUDA_HOME=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 Export NVHPC_CURRENT_CUDA_HOME=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 Export NVHPC_CURRENT_CUDA_VERSION=11.0.228 Export NVCOMPILER=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9 Export PGI=/opt/nvidia/hpc_sdk /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/acclnk -nvidia /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/nvdd -cuda11000 -cudaroot /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 -computecap=80 -unifiedmem -init=ctxrel -v /usr/bin/ld /usr/lib64/crt1.o /usr/lib64/crti.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/usr/lib64 -L/usr/lib64/gcc/x86_64-suse-linux/7 /tmp/petsc-AzrmlS/config.compilers/conftest.o -lstdc++ -ldl -rpath=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -no-as-needed -ldarshan -lz --as-needed -lsci_nvidia_mpi_mp --no-as-needed --as-needed -lsci_nvidia_mp --no-as-needed -ldl --as-needed -lmpifort_nvidia --no-as-needed --as-needed -lmpi_nvidia --no-as-needed --as-needed -ldsmml --no-as-needed -lxpmem --disable-new-dtags -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -rpath /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 -o /tmp/petsc-AzrmlS/config.compilers/conftest -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_cuda.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_mp.o -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 --as-needed -lnvhpcman --no-as-needed -ldl -lcudadevice -lnvf -lnvomp -ldl --as-needed -lnvhpcatm -latomic --no-as-needed -lpthread --start-group -lnvcpumath-avx2 -lnsnvc -lnvc --end-group -lrt -lpthread -lm -lgcc -lc -lgcc -lgcc_s /usr/lib64/gcc/x86_64-suse-linux/7/crtend.o /usr/lib64/crtn.o Linker output before filtering: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/nvdd -cudaallowundefgbls -dcuda /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/usr/lib64 -L/usr/lib64/gcc/x86_64-suse-linux/7 /tmp/petsc-AzrmlS/config.compilers/conftest.o -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_cuda.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_mp.o -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc -lc -lgcc_s -dolink -cuda11000 -computecap 80 -o /tmp/pgcudazDqElcnrGgxw.cubin /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/nvdd -fatobj /tmp/pgcudafatHDqEJtvRR6V6.o -o /tmp/pgcudafatHDqEJtvRR6V6.o -cuda11000 -dcuda /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 -init=ctxrel -sm 80 /tmp/pgcudazDqElcnrGgxw.cubin /usr/bin/ld /usr/lib64/crt1.o /usr/lib64/crti.o /tmp/pgcudafatHDqEJtvRR6V6.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/usr/lib64 -L/usr/lib64/gcc/x86_64-suse-linux/7 /tmp/petsc-AzrmlS/config.compilers/conftest.o -lstdc++ -ldl -rpath=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -no-as-needed -ldarshan -lz --as-needed -lsci_nvidia_mpi_mp --no-as-needed --as-needed -lsci_nvidia_mp --no-as-needed -ldl --as-needed -lmpifort_nvidia --no-as-needed --as-needed -lmpi_nvidia --no-as-needed --as-needed -ldsmml --no-as-needed -lxpmem --disable-new-dtags -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -rpath /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 -o /tmp/petsc-AzrmlS/config.compilers/conftest -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_cuda.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_mp.o -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 --as-needed -lnvhpcman --no-as-needed -ldl -lcudadevice -lnvf -lnvomp -ldl --as-needed -lnvhpcatm -latomic --no-as-needed -lpthread --start-group -lnvcpumath-avx2 -lnsnvc -lnvc --end-group -lrt -lpthread -lm -lgcc -lc -lgcc -lgcc_s /usr/lib64/gcc/x86_64-suse-linux/7/crtend.o /usr/lib64/crtn.o unlink /tmp/pgcudafatHDqEJtvRR6V6.o unlink /tmp/pgcudazDqElcnrGgxw.cubin Export PGI_CURR_CUDA_HOME=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 Export NVHPC_CURRENT_CUDA_HOME=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 Export NVHPC_CURRENT_CUDA_VERSION=11.0.228 Export NVCOMPILER=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9 Export PGI=/opt/nvidia/hpc_sdk /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/acclnk -nvidia /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/nvdd -cuda11000 -cudaroot /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 -computecap=80 -unifiedmem -init=ctxrel -v /usr/bin/ld /usr/lib64/crt1.o /usr/lib64/crti.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/usr/lib64 -L/usr/lib64/gcc/x86_64-suse-linux/7 /tmp/petsc-AzrmlS/config.compilers/conftest.o -lstdc++ -ldl -rpath=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -no-as-needed -ldarshan -lz --as-needed -lsci_nvidia_mpi_mp --no-as-needed --as-needed -lsci_nvidia_mp --no-as-needed -ldl --as-needed -lmpifort_nvidia --no-as-needed --as-needed -lmpi_nvidia --no-as-needed --as-needed -ldsmml --no-as-needed -lxpmem --disable-new-dtags -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -rpath /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 -o /tmp/petsc-AzrmlS/config.compilers/conftest -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_cuda.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_mp.o -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 --as-needed -lnvhpcman --no-as-needed -ldl -lcudadevice -lnvf -lnvomp -ldl --as-needed -lnvhpcatm -latomic --no-as-needed -lpthread --start-group -lnvcpumath-avx2 -lnsnvc -lnvc --end-group -lrt -lpthread -lm -lgcc -lc -lgcc -lgcc_s /usr/lib64/gcc/x86_64-suse-linux/7/crtend.o /usr/lib64/crtn.o : Linker output after filtering: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/nvdd -cudaallowundefgbls -dcuda /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/usr/lib64 -L/usr/lib64/gcc/x86_64-suse-linux/7 /tmp/petsc-AzrmlS/config.compilers/conftest.o -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_cuda.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_mp.o -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc -lc -lgcc_s -dolink -cuda11000 -computecap 80 -o /tmp/pgcudazDqElcnrGgxw.cubin /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/nvdd -fatobj /tmp/pgcudafatHDqEJtvRR6V6.o -o /tmp/pgcudafatHDqEJtvRR6V6.o -cuda11000 -dcuda /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 -init=ctxrel -sm 80 /tmp/pgcudazDqElcnrGgxw.cubin /usr/bin/ld /usr/lib64/crt1.o /usr/lib64/crti.o /tmp/pgcudafatHDqEJtvRR6V6.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/usr/lib64 -L/usr/lib64/gcc/x86_64-suse-linux/7 /tmp/petsc-AzrmlS/config.compilers/conftest.o -lstdc++ -ldl -rpath=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -no-as-needed -ldarshan -lz --as-needed -lsci_nvidia_mpi_mp --no-as-needed --as-needed -lsci_nvidia_mp --no-as-needed -ldl --as-needed -lmpifort_nvidia --no-as-needed --as-needed -lmpi_nvidia --no-as-needed --as-needed -ldsmml --no-as-needed -lxpmem --disable-new-dtags -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -rpath /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 -o /tmp/petsc-AzrmlS/config.compilers/conftest -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_cuda.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_mp.o -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 --as-needed -lnvhpcman --no-as-needed -ldl -lcudadevice -lnvf -lnvomp -ldl --as-needed -lnvhpcatm -latomic --no-as-needed -lpthread --start-group -lnvcpumath-avx2 -lnsnvc -lnvc --end-group -lrt -lpthread -lm -lgcc -lc -lgcc -lgcc_s /usr/lib64/gcc/x86_64-suse-linux/7/crtend.o /usr/lib64/crtn.o unlink /tmp/pgcudafatHDqEJtvRR6V6.o unlink /tmp/pgcudazDqElcnrGgxw.cubin Export PGI_CURR_CUDA_HOME=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 Export NVHPC_CURRENT_CUDA_HOME=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 Export NVHPC_CURRENT_CUDA_VERSION=11.0.228 Export NVCOMPILER=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9 Export PGI=/opt/nvidia/hpc_sdk /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/acclnk -nvidia /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/nvdd -cuda11000 -cudaroot /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 -computecap=80 -unifiedmem -init=ctxrel -v /usr/bin/ld /usr/lib64/crt1.o /usr/lib64/crti.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/usr/lib64 -L/usr/lib64/gcc/x86_64-suse-linux/7 /tmp/petsc-AzrmlS/config.compilers/conftest.o -lstdc++ -ldl -rpath=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -no-as-needed -ldarshan -lz --as-needed -lsci_nvidia_mpi_mp --no-as-needed --as-needed -lsci_nvidia_mp --no-as-needed -ldl --as-needed -lmpifort_nvidia --no-as-needed --as-needed -lmpi_nvidia --no-as-needed --as-needed -ldsmml --no-as-needed -lxpmem --disable-new-dtags -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -rpath /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -rpath /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 -o /tmp/petsc-AzrmlS/config.compilers/conftest -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_cuda.o /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_mp.o -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 --as-needed -lnvhpcman --no-as-needed -ldl -lcudadevice -lnvf -lnvomp -ldl --as-needed -lnvhpcatm -latomic --no-as-needed -lpthread --start-group -lnvcpumath-avx2 -lnsnvc -lnvc --end-group -lrt -lpthread -lm -lgcc -lc -lgcc -lgcc_s /usr/lib64/gcc/x86_64-suse-linux/7/crtend.o /usr/lib64/crtn.o: Executing: ftn -V stdout: nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/nvdd compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/nvdd compilers: Checking arg -cudaallowundefgbls compilers: Unknown arg -cudaallowundefgbls compilers: Checking arg -dcuda compilers: Unknown arg -dcuda compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o compilers: Checking arg -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib compilers: Found library directory: -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib compilers: Checking arg -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib compilers: Found library directory: -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib compilers: Checking arg -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib compilers: Found library directory: -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib compilers: Checking arg -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib compilers: Found library directory: -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib compilers: Checking arg -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 compilers: Found library directory: -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 compilers: Checking arg -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib compilers: Found library directory: -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib compilers: Checking arg -L/usr/lib64 compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/7 compilers: Found library directory: -L/usr/lib64/gcc/x86_64-suse-linux/7 compilers: Checking arg /tmp/petsc-AzrmlS/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-AzrmlS/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -ldarshan compilers: Found library: -ldarshan compilers: Checking arg -lz compilers: Found library: -lz compilers: Checking arg -lsci_nvidia_mpi_mp compilers: Found library: -lsci_nvidia_mpi_mp compilers: Checking arg -lsci_nvidia_mp compilers: Found library: -lsci_nvidia_mp compilers: Checking arg -lmpifort_nvidia compilers: Found library: -lmpifort_nvidia compilers: Checking arg -lmpi_nvidia compilers: Found library: -lmpi_nvidia compilers: Checking arg -ldsmml compilers: Found library: -ldsmml compilers: Checking arg -lxpmem compilers: Found library: -lxpmem compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_cuda.o compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_cuda.o compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_mp.o compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_mp.o compilers: Checking arg -lacchost compilers: Found library: -lacchost compilers: Checking arg -laccdevaux compilers: Found library: -laccdevaux compilers: Checking arg -laccdevice compilers: Found library: -laccdevice compilers: Checking arg -lhxrt_dev_110 compilers: Found library: -lhxrt_dev_110 compilers: Checking arg -lnvhpcman compilers: Found library: -lnvhpcman compilers: Checking arg -lcudadevice compilers: Found library: -lcudadevice compilers: Checking arg -lnvf compilers: Found library: -lnvf compilers: Checking arg -lnvomp compilers: Found library: -lnvomp compilers: Checking arg -lnvhpcatm compilers: Found library: -lnvhpcatm compilers: Checking arg -latomic compilers: Found library: -latomic compilers: Checking arg -lpthread compilers: Found library: -lpthread compilers: Checking arg -lnvcpumath-avx2 compilers: Found library: -lnvcpumath-avx2 compilers: Checking arg -lnsnvc compilers: Found library: -lnsnvc compilers: Checking arg -lnvc compilers: Found library: -lnvc compilers: Checking arg -lrt compilers: Found library: -lrt compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s compilers: Checking arg -dolink compilers: Unknown arg -dolink compilers: Checking arg -cuda11000 compilers: Unknown arg -cuda11000 compilers: Checking arg -computecap compilers: Unknown arg -computecap compilers: Checking arg 80 compilers: Unknown arg 80 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/pgcudazDqElcnrGgxw.cubin compilers: Unknown arg /tmp/pgcudazDqElcnrGgxw.cubin compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/nvdd compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/nvdd compilers: Checking arg -fatobj compilers: Unknown arg -fatobj compilers: Checking arg /tmp/pgcudafatHDqEJtvRR6V6.o compilers: Unknown arg /tmp/pgcudafatHDqEJtvRR6V6.o compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/pgcudafatHDqEJtvRR6V6.o compilers: Unknown arg /tmp/pgcudafatHDqEJtvRR6V6.o compilers: Checking arg -cuda11000 compilers: Unknown arg -cuda11000 compilers: Checking arg -dcuda compilers: Unknown arg -dcuda compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 compilers: Checking arg -init=ctxrel compilers: Unknown arg -init=ctxrel compilers: Checking arg -sm compilers: Unknown arg -sm compilers: Checking arg 80 compilers: Unknown arg 80 compilers: Checking arg /tmp/pgcudazDqElcnrGgxw.cubin compilers: Unknown arg /tmp/pgcudazDqElcnrGgxw.cubin compilers: Checking arg /usr/bin/ld compilers: Unknown arg /usr/bin/ld compilers: Checking arg /usr/lib64/crt1.o compilers: Unknown arg /usr/lib64/crt1.o compilers: Checking arg /usr/lib64/crti.o compilers: Unknown arg /usr/lib64/crti.o compilers: Checking arg /tmp/pgcudafatHDqEJtvRR6V6.o compilers: Unknown arg /tmp/pgcudafatHDqEJtvRR6V6.o compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld compilers: Checking arg -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib compilers: Checking arg -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib compilers: Checking arg -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib compilers: Already in lflags so skipping: -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib compilers: Checking arg -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib compilers: Already in lflags so skipping: -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib compilers: Checking arg -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 compilers: Already in lflags so skipping: -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 compilers: Checking arg -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib compilers: Already in lflags so skipping: -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib compilers: Checking arg -L/usr/lib64 compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/7 compilers: Already in lflags so skipping: -L/usr/lib64/gcc/x86_64-suse-linux/7 compilers: Checking arg /tmp/petsc-AzrmlS/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-AzrmlS/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -rpath=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib compilers: Unknown arg -rpath=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib compilers: Checking arg -no-as-needed compilers: Unknown arg -no-as-needed compilers: Checking arg -ldarshan compilers: Already in lflags: -ldarshan compilers: Checking arg -lz compilers: Already in lflags: -lz compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lsci_nvidia_mpi_mp compilers: Already in lflags: -lsci_nvidia_mpi_mp compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lsci_nvidia_mp compilers: Already in lflags: -lsci_nvidia_mp compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lmpifort_nvidia compilers: Already in lflags: -lmpifort_nvidia compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lmpi_nvidia compilers: Already in lflags: -lmpi_nvidia compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -ldsmml compilers: Already in lflags: -ldsmml compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lxpmem compilers: Already in lflags: -lxpmem compilers: Checking arg --disable-new-dtags compilers: Unknown arg --disable-new-dtags compilers: Checking arg -rpath compilers: Found -rpath library: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib compilers: Checking arg -rpath compilers: Found -rpath library: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 compilers: Checking arg -rpath compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-AzrmlS/config.compilers/conftest compilers: Unknown arg /tmp/petsc-AzrmlS/config.compilers/conftest compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_cuda.o compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_cuda.o compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_mp.o compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_mp.o compilers: Checking arg -lacchost compilers: Already in lflags: -lacchost compilers: Checking arg -laccdevaux compilers: Already in lflags: -laccdevaux compilers: Checking arg -laccdevice compilers: Already in lflags: -laccdevice compilers: Checking arg -lhxrt_dev_110 compilers: Already in lflags: -lhxrt_dev_110 compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lnvhpcman compilers: Already in lflags: -lnvhpcman compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lcudadevice compilers: Already in lflags: -lcudadevice compilers: Checking arg -lnvf compilers: Already in lflags: -lnvf compilers: Checking arg -lnvomp compilers: Already in lflags: -lnvomp compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lnvhpcatm compilers: Already in lflags: -lnvhpcatm compilers: Checking arg -latomic compilers: Already in lflags: -latomic compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg --start-group compilers: Unknown arg --start-group compilers: Checking arg -lnvcpumath-avx2 compilers: Already in lflags: -lnvcpumath-avx2 compilers: Checking arg -lnsnvc compilers: Already in lflags: -lnsnvc compilers: Checking arg -lnvc compilers: Already in lflags: -lnvc compilers: Checking arg --end-group compilers: Unknown arg --end-group compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/7/crtend.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/7/crtend.o compilers: Checking arg /usr/lib64/crtn.o compilers: Unknown arg /usr/lib64/crtn.o compilers: Checking arg unlink compilers: Unknown arg unlink compilers: Checking arg /tmp/pgcudafatHDqEJtvRR6V6.o compilers: Unknown arg /tmp/pgcudafatHDqEJtvRR6V6.o compilers: Checking arg unlink compilers: Unknown arg unlink compilers: Checking arg /tmp/pgcudazDqElcnrGgxw.cubin compilers: Unknown arg /tmp/pgcudazDqElcnrGgxw.cubin compilers: Checking arg Export compilers: Unknown arg Export compilers: Checking arg PGI_CURR_CUDA_HOME=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 compilers: Unknown arg PGI_CURR_CUDA_HOME=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 compilers: Checking arg Export compilers: Unknown arg Export compilers: Checking arg NVHPC_CURRENT_CUDA_HOME=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 compilers: Unknown arg NVHPC_CURRENT_CUDA_HOME=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 compilers: Checking arg Export compilers: Unknown arg Export compilers: Checking arg NVHPC_CURRENT_CUDA_VERSION=11.0.228 compilers: Unknown arg NVHPC_CURRENT_CUDA_VERSION=11.0.228 compilers: Checking arg Export compilers: Unknown arg Export compilers: Checking arg NVCOMPILER=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9 compilers: Unknown arg NVCOMPILER=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9 compilers: Checking arg Export compilers: Unknown arg Export compilers: Checking arg PGI=/opt/nvidia/hpc_sdk compilers: Unknown arg PGI=/opt/nvidia/hpc_sdk compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/acclnk compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/acclnk compilers: Checking arg -nvidia compilers: Unknown arg -nvidia compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/nvdd compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/tools/nvdd compilers: Checking arg -cuda11000 compilers: Unknown arg -cuda11000 compilers: Checking arg -cudaroot compilers: Unknown arg -cudaroot compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0 compilers: Checking arg -computecap=80 compilers: Unknown arg -computecap=80 compilers: Checking arg -unifiedmem compilers: Unknown arg -unifiedmem compilers: Checking arg -init=ctxrel compilers: Unknown arg -init=ctxrel compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg /usr/bin/ld compilers: Unknown arg /usr/bin/ld compilers: Checking arg /usr/lib64/crt1.o compilers: Unknown arg /usr/lib64/crt1.o compilers: Checking arg /usr/lib64/crti.o compilers: Unknown arg /usr/lib64/crti.o compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/trace_init.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/f90main.o compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/nvhpc.ld compilers: Checking arg -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib compilers: Checking arg -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib compilers: Checking arg -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib compilers: Already in lflags so skipping: -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib compilers: Checking arg -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib compilers: Already in lflags so skipping: -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib compilers: Checking arg -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 compilers: Already in lflags so skipping: -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 compilers: Checking arg -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib compilers: Already in lflags so skipping: -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib compilers: Checking arg -L/usr/lib64 compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/7 compilers: Already in lflags so skipping: -L/usr/lib64/gcc/x86_64-suse-linux/7 compilers: Checking arg /tmp/petsc-AzrmlS/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-AzrmlS/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -rpath=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib compilers: Unknown arg -rpath=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib compilers: Checking arg -no-as-needed compilers: Unknown arg -no-as-needed compilers: Checking arg -ldarshan compilers: Already in lflags: -ldarshan compilers: Checking arg -lz compilers: Already in lflags: -lz compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lsci_nvidia_mpi_mp compilers: Already in lflags: -lsci_nvidia_mpi_mp compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lsci_nvidia_mp compilers: Already in lflags: -lsci_nvidia_mp compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lmpifort_nvidia compilers: Already in lflags: -lmpifort_nvidia compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lmpi_nvidia compilers: Already in lflags: -lmpi_nvidia compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -ldsmml compilers: Already in lflags: -ldsmml compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lxpmem compilers: Already in lflags: -lxpmem compilers: Checking arg --disable-new-dtags compilers: Unknown arg --disable-new-dtags compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-AzrmlS/config.compilers/conftest compilers: Unknown arg /tmp/petsc-AzrmlS/config.compilers/conftest compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_cuda.o compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_cuda.o compilers: Checking arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_mp.o compilers: Unknown arg /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib/acc_init_link_mp.o compilers: Checking arg -lacchost compilers: Already in lflags: -lacchost compilers: Checking arg -laccdevaux compilers: Already in lflags: -laccdevaux compilers: Checking arg -laccdevice compilers: Already in lflags: -laccdevice compilers: Checking arg -lhxrt_dev_110 compilers: Already in lflags: -lhxrt_dev_110 compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lnvhpcman compilers: Already in lflags: -lnvhpcman compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lcudadevice compilers: Already in lflags: -lcudadevice compilers: Checking arg -lnvf compilers: Already in lflags: -lnvf compilers: Checking arg -lnvomp compilers: Already in lflags: -lnvomp compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lnvhpcatm compilers: Already in lflags: -lnvhpcatm compilers: Checking arg -latomic compilers: Already in lflags: -latomic compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg --start-group compilers: Unknown arg --start-group compilers: Checking arg -lnvcpumath-avx2 compilers: Already in lflags: -lnvcpumath-avx2 compilers: Checking arg -lnsnvc compilers: Already in lflags: -lnsnvc compilers: Checking arg -lnvc compilers: Already in lflags: -lnvc compilers: Checking arg --end-group compilers: Unknown arg --end-group compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/7/crtend.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/7/crtend.o compilers: Checking arg /usr/lib64/crtn.o compilers: Unknown arg /usr/lib64/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-L/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7', '-L/usr/lib64/gcc/x86_64-suse-linux/7', '-lstdc++', '-ldl', '-ldarshan', '-lz', '-lsci_nvidia_mpi_mp', '-lsci_nvidia_mp', '-lmpifort_nvidia', '-lmpi_nvidia', '-ldsmml', '-lxpmem', '-lacchost', '-laccdevaux', '-laccdevice', '-lhxrt_dev_110', '-lnvhpcman', '-lcudadevice', '-lnvf', '-lnvomp', '-lnvhpcatm', '-latomic', '-lpthread', '-lnvcpumath-avx2', '-lnsnvc', '-lnvc', '-lrt', '-lm', '-lgcc_s', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with Fortran as the linker ===== Checking compiler Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Successful compile: Source: program main end ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: ftn -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lstdc++ -ldl ======== Checking running linked program ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: ftn -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lstdc++ -ldl Testing executable /tmp/petsc-AzrmlS/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-AzrmlS/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-AzrmlS/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C as the linker ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lstdc++ -ldl ======== Checking running linked program ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lstdc++ -ldl Testing executable /tmp/petsc-AzrmlS/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-AzrmlS/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-AzrmlS/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C++ as linker ===== Checking compiler Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lstdc++ -ldl ======== Checking running linked program ===== Checking linker Executing: CC -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /tmp/petsc-AzrmlS/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lstdc++ -ldl Testing executable /tmp/petsc-AzrmlS/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-AzrmlS/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-AzrmlS/config.setCompilers/conftest compilers: Fortran libraries can be used from C++ ============================================================================================= TESTING: checkFortranLinkingCxx from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:1748) Check that Fortran can link C++ libraries ===== Checking compiler Executing: CC -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} ===== Checking compiler Executing: CC -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/cxxobj.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran can link C++ functions ============================================================================================= TESTING: setupFrameworkCompilers from config.compilers(/global/u2/m/madams/petsc/config/BuildSystem/config/compilers.py:1914) child config.compilers 28.013827 ============================================================================================= TESTING: configureClosure from config.utilities.closure(/global/u2/m/madams/petsc/config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.closure/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.utilities.closure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/config.utilities.closure/conftest.c", line 6: error: expected an identifier int (^closure)(int);; ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.utilities.closure/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 0.211465 ============================================================================================= TESTING: checkFortranTypeSizes from config.compilersFortran(/global/u2/m/madams/petsc/config/BuildSystem/config/compilersFortran.py:56) Check whether real*8 is supported and suggest flags which will allow support Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilersFortran/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilersFortran/conftest.F90 Successful compile: Source: program main real*8 variable end ============================================================================================= TESTING: checkFortranPreprocessor from config.compilersFortran(/global/u2/m/madams/petsc/config/BuildSystem/config/compilersFortran.py:73) Determine if Fortran handles preprocessing properly Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Output from compiling with -g -mp=gpu -KPIC compilers: Fortran uses preprocessor ============================================================================================= TESTING: checkFortranDefineCompilerOption from config.compilersFortran(/global/u2/m/madams/petsc/config/BuildSystem/config/compilersFortran.py:96) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC -DTesting /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Output from compiling with -g -mp=gpu -KPIC -DTesting Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro ============================================================================================= TESTING: checkFortran90 from config.compilersFortran(/global/u2/m/madams/petsc/config/BuildSystem/config/compilersFortran.py:146) Determine whether the Fortran compiler handles F90 ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilersFortran/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilersFortran/conftest.F90 Successful compile: Source: program main REAL(KIND=SELECTED_REAL_KIND(10)) d INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilersFortran/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilersFortran/conftest.o -lstdc++ -ldl Fortran compiler supports F90 ============================================================================================= TESTING: checkFortran90FreeForm from config.compilersFortran(/global/u2/m/madams/petsc/config/BuildSystem/config/compilersFortran.py:162) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilersFortran/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilersFortran/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilersFortran/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "USING_F90FREEFORM" to "1" Fortran compiler supports F90FreeForm ============================================================================================= TESTING: checkFortran2003 from config.compilersFortran(/global/u2/m/madams/petsc/config/BuildSystem/config/compilersFortran.py:176) Determine whether the Fortran compiler handles F2003 ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilersFortran/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilersFortran/conftest.F90 Successful compile: Source: module Base_module type, public :: base_type integer :: A contains procedure, public :: Print => BasePrint end type base_type contains subroutine BasePrint(this) class(base_type) :: this end subroutine BasePrint end module Base_module program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilersFortran/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 ============================================================================================= TESTING: checkFortran90Array from config.compilersFortran(/global/u2/m/madams/petsc/config/BuildSystem/config/compilersFortran.py:211) Check for F90 array interfaces Executing: uname -s stdout: Linux ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilersFortran/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilersFortran/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } ======== Checking running linked program ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilersFortran/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilersFortran/conftest.F90 Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilersFortran/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilersFortran/conftest.o /tmp/petsc-AzrmlS/config.compilersFortran/fooobj.o -lstdc++ -ldl Testing executable /tmp/petsc-AzrmlS/config.compilersFortran/conftest to see if it can be run Executing: /tmp/petsc-AzrmlS/config.compilersFortran/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-AzrmlS/config.compilersFortran/conftest stdout: arrays [0x60b760 0x60b760 0x60b760] arrays [0x7ffe10a486f0 0x7ffe10a487a8 0x7ffe10a486f0] pointers match! [0x7ffe10a48640 0x7ffe10a48640] [0x7ffe10a486f8] Defined "HAVE_F90_2PTR_ARG" to "1" compilers: F90 compiler uses two arguments for array pointers ============================================================================================= TESTING: checkFortran90AssumedType from config.compilersFortran(/global/u2/m/madams/petsc/config/BuildSystem/config/compilersFortran.py:298) Executing: ftn -qversion ============================================================================================= TESTING: checkFortranModuleInclude from config.compilersFortran(/global/u2/m/madams/petsc/config/BuildSystem/config/compilersFortran.py:303) Figures out what flag is used to specify the include path for Fortran modules ===== Checking compiler Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilersFortran/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilersFortran/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran/confdir -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilersFortran/conftest.F90 Successful compile: Source: program main use configtest write(*,*) testint end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilersFortran/conftest -I/tmp/petsc-AzrmlS/config.compilersFortran/confdir -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilersFortran/conftest.o /tmp/petsc-AzrmlS/config.compilersFortran/configtest.o -lstdc++ -ldl compilers: Fortran module include flag -I found ============================================================================================= TESTING: checkFortranModuleOutput from config.compilersFortran(/global/u2/m/madams/petsc/config/BuildSystem/config/compilersFortran.py:369) Figures out what flag is used to specify the output path for Fortran modules ===== Checking compiler Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilersFortran/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -module /tmp/petsc-AzrmlS/config.compilersFortran/confdir -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module found ============================================================================================= TESTING: checkFortranTypeStar from config.compilersFortran(/global/u2/m/madams/petsc/config/BuildSystem/config/compilersFortran.py:135) Determine whether the Fortran compiler handles type(*) ===== Checking compiler Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilersFortran/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 2 stderr: NVFORTRAN-S-0034-Syntax error at or near * (/tmp/petsc-AzrmlS/config.compilersFortran/conftest.F90: 4) 0 inform, 0 warnings, 1 severes, 0 fatal for main Source: program main interface subroutine a(b) type(*) :: b(:) end subroutine end interface end Fortran compiler does not support type(*) ============================================================================================= TESTING: checkFortranTypeInitialize from config.compilersFortran(/global/u2/m/madams/petsc/config/BuildSystem/config/compilersFortran.py:125) Determines if PETSc objects in Fortran are initialized by default (doesn't work with common blocks) Defined "FORTRAN_TYPE_INITIALIZE" to " = -2" Initializing Fortran objects ============================================================================================= TESTING: configureFortranFlush from config.compilersFortran(/global/u2/m/madams/petsc/config/BuildSystem/config/compilersFortran.py:116) ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilersFortran/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilersFortran/conftest.F90 Successful compile: Source: program main call flush(6) end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilersFortran/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_FLUSH" to "1" ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilersFortran(/global/u2/m/madams/petsc/config/BuildSystem/config/compilersFortran.py:414) Check if -MMD works for dependency generation, and add it if it does Trying FC compiler flag -MMD -MP Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC -MMD -MP /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: nvfortran-Error-Unknown switch: -MP Source: program main end Output from compiling with -g -mp=gpu -KPIC -MMD -MP nvfortran-Error-Unknown switch: -MP PETSc Error: No output file produced Rejecting compiler flag -MMD -MP due to nonzero status from link Rejected FC compiler flag -MMD -MP Trying FC compiler flag -MMD Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC -MMD /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -g -mp=gpu -KPIC -MMD Rejected FC compiler flag -MMD because no dependency file (/tmp/petsc-AzrmlS/config.setCompilers/conftest.d) was generated Trying FC compiler flag -xMMD Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC -xMMD /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: nvfortran-Error-Unknown switch: -xMMD Source: program main end Output from compiling with -g -mp=gpu -KPIC -xMMD nvfortran-Error-Unknown switch: -xMMD PETSc Error: No output file produced Rejecting compiler flag -xMMD due to nonzero status from link Rejected FC compiler flag -xMMD Trying FC compiler flag -qmakedep=gcc Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC -qmakedep=gcc /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: nvfortran-Error-Unknown switch: -qmakedep=gcc Source: program main end Output from compiling with -g -mp=gpu -KPIC -qmakedep=gcc nvfortran-Error-Unknown switch: -qmakedep=gcc PETSc Error: No output file produced Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejected FC compiler flag -qmakedep=gcc Trying FC compiler flag -MD Executing: ftn -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC -MD /tmp/petsc-AzrmlS/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -g -mp=gpu -KPIC -MD Rejected FC compiler flag -MD because no dependency file (/tmp/petsc-AzrmlS/config.setCompilers/conftest.d) was generated child config.compilersFortran 6.627014 ============================================================================================= TESTING: checkStdC from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:107) ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.headers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c ======== Checking running linked program ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.headers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.headers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.headers/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-AzrmlS/config.headers/conftest to see if it can be run Executing: /tmp/petsc-AzrmlS/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-AzrmlS/config.headers/conftest ============================================================================================= TESTING: checkStat from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:140) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c ============================================================================================= TESTING: checkSysWait from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:175) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.headers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: checkTime from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:197) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ============================================================================================= TESTING: checkMath from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.headers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ============================================================================================= TESTING: check from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ============================================================================================= TESTING: checkRecursiveMacros from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.headers/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 7.795920 ============================================================================================= TESTING: configureCacheDetails from config.utilities.cacheDetails(/global/u2/m/madams/petsc/config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.headers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ======== Checking running linked program ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.utilities.cacheDetails/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.cacheDetails/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-AzrmlS/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-AzrmlS/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-AzrmlS/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "64" child config.utilities.cacheDetails 0.963346 ============================================================================================= TESTING: check_struct_sigaction from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced struct sigaction a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ============================================================================================= TESTING: check__int64 from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/config.types/conftest.c", line 11: error: identifier "__int64" is undefined __int64 a;; ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.types/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ============================================================================================= TESTING: checkSizeTypes from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced size_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ============================================================================================= TESTING: checkFileTypes from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced mode_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced off_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ============================================================================================= TESTING: checkIntegerTypes from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ============================================================================================= TESTING: checkPID from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced pid_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ============================================================================================= TESTING: checkUID from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.types/conftest.c ============================================================================================= TESTING: checkC99Complex from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.types/conftest.c", line 6: warning: variable "x" was set but never used double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.types/conftest.c", line 6: warning: variable "x" was set but never used double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.types/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.o -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.types/conftest.c", line 7: warning: variable "x" was set but never used double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { double _Complex x; x = I; ; return 0; } Defined "HAVE_C99_COMPLEX" to "1" ============================================================================================= TESTING: checkCxxComplex from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:95) Check for complex numbers in namespace std ===== Checking linker Executing: CC -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.types/conftest.cc Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.types/conftest.cc", line 6: warning: variable "x" was declared but never referenced std::complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Executing: CC -o /tmp/petsc-AzrmlS/config.types/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ============================================================================================= TESTING: checkConst from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:106) Checks for working const, and if not found defines it to empty string ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.types/conftest.c", line 25: warning: variable "x" is used before its value is set if (x[0]); ^ "/tmp/petsc-AzrmlS/config.types/conftest.c", line 30: warning: variable "t" is used before its value is set *t++ = 0; ^ "/tmp/petsc-AzrmlS/config.types/conftest.c", line 46: warning: variable "b" is used before its value is set struct s *b; b->j = 5; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ============================================================================================= TESTING: checkSizeof from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ============================================================================================= TESTING: checkSizeof from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ============================================================================================= TESTING: checkSizeof from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ============================================================================================= TESTING: checkSizeof from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ============================================================================================= TESTING: checkSizeof from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" Defined "USING_64BIT_PTR" to "1" ============================================================================================= TESTING: checkVisibility from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:196) ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" ===== Checking compiler Executing: CC -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ============================================================================================= TESTING: checkMaxPathLen from config.types(/global/u2/m/madams/petsc/config/BuildSystem/config/types.py:218) Determining PETSC_MAX_PATH_LEN ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.types /tmp/petsc-AzrmlS/config.types/conftest.c Defined "MAX_PATH_LEN" to "4096" child config.types 7.758082 ============================================================================================= TESTING: configureMemAlign from PETSc.options.memAlign(/global/u2/m/madams/petsc/config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.002331 ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lfpe pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: cannot find -lfpe pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: cannot find -lfpe pgacclnk: child process exit status 1: /usr/bin/ld: ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lsocket /usr/bin/ld: cannot find -lnsl pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: cannot find -lsocket /usr/bin/ld: cannot find -lnsl pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: cannot find -lsocket /usr/bin/ld: cannot find -lnsl pgacclnk: child process exit status 1: /usr/bin/ld: ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lfpe pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: cannot find -lfpe pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: cannot find -lfpe pgacclnk: child process exit status 1: /usr/bin/ld: ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lsocket /usr/bin/ld: cannot find -lnsl pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: cannot find -lsocket /usr/bin/ld: cannot find -lnsl pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: cannot find -lsocket /usr/bin/ld: cannot find -lnsl pgacclnk: child process exit status 1: /usr/bin/ld: ============================================================================================= TESTING: checkMath from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:296) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } void dummy(void) {_check_sin(); _check_floor(); _check_log10(); _check_pow();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lstdc++ -ldl CheckMath: using math library [] ============================================================================================= TESTING: checkMathErf from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:315) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.libraries/conftest.c", line 5: warning: variable "y" was set but never used static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.compilers/conftest.c", line 5: warning: variable "y" was set but never used static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } void dummy(void) {_check_erf();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lstdc++ -ldl erf() found Defined "HAVE_ERF" to "1" ============================================================================================= TESTING: checkMathTgamma from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:324) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library [] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.libraries/conftest.c", line 5: warning: variable "y" was set but never used static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.compilers/conftest.c", line 5: warning: variable "y" was set but never used static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } void dummy(void) {_check_tgamma();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lstdc++ -ldl tgamma() found Defined "HAVE_TGAMMA" to "1" ============================================================================================= TESTING: checkMathLgamma from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:333) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library [] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } void dummy(void) {_check_lgamma();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lstdc++ -ldl lgamma() found Defined "HAVE_LGAMMA" to "1" ============================================================================================= TESTING: checkMathFenv from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:346) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } void dummy(void) {_check_fesetenv();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lstdc++ -ldl Defined "HAVE_FENV_H" to "1" ============================================================================================= TESTING: checkMathLog2 from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:354) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } void dummy(void) {_check_log2();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lstdc++ -ldl log2() found Defined "HAVE_LOG2" to "1" ============================================================================================= TESTING: checkRealtime from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:363) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } void dummy(void) {_check_clock_gettime();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lstdc++ -ldl realtime functions are linked in by default ============================================================================================= TESTING: checkDynamic from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:379) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -ldl -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } void dummy(void) {_check_dlopen();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -ldl -lstdc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 15.542953 ============================================================================================= TESTING: configureLibraryOptions from PETSc.options.libraryOptions(/global/u2/m/madams/petsc/config/PETSc/options/libraryOptions.py:38) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Executing: cc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_bgl_perfctr_void': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_bgl_perfctr_void': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_bgl_perfctr_void': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' pgacclnk: child process exit status 1: /usr/bin/ld: Checking for functions [ADIOI_BGL_Open] in library [''] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_ADIOI_BGL_Open': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_ADIOI_BGL_Open': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_ADIOI_BGL_Open': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' pgacclnk: child process exit status 1: /usr/bin/ld: *********BGL/IBM test failure Defined "USE_BACKWARD_LOOP" to "1" Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ============================================================================================= TESTING: configureISColorValueType from PETSc.options.libraryOptions(/global/u2/m/madams/petsc/config/PETSc/options/libraryOptions.py:99) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 1.411198 child config.atomics 0.000018 ============================================================================================= TESTING: checkSysinfo from config.functions(/global/u2/m/madams/petsc/config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/config.functions/conftest.c", line 9: catastrophic error: #error directive: "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-AzrmlS/config.functions/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_SYS_SYSINFO_H # include #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVPrintf from config.functions(/global/u2/m/madams/petsc/config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: checkVFPrintf from config.functions(/global/u2/m/madams/petsc/config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: checkVSNPrintf from config.functions(/global/u2/m/madams/petsc/config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ============================================================================================= TESTING: checkNanosleep from config.functions(/global/u2/m/madams/petsc/config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ============================================================================================= TESTING: checkMemmove from config.functions(/global/u2/m/madams/petsc/config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MEMMOVE" to "1" ============================================================================================= TESTING: checkSignalHandlerType from config.functions(/global/u2/m/madams/petsc/config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value ===== Checking linker Executing: CC -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Executing: CC -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Defined "SIGNAL_CAST" to " " ============================================================================================= TESTING: checkFreeReturnType from config.functions(/global/u2/m/madams/petsc/config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/config.functions/conftest.c", line 6: warning: variable "p" is used before its value is set int ierr; void *p; ierr = free(p); return 0; ^ "/tmp/petsc-AzrmlS/config.functions/conftest.c", line 6: error: a value of type "void" cannot be assigned to an entity of type "int" int ierr; void *p; ierr = free(p); return 0; ^ "/tmp/petsc-AzrmlS/config.functions/conftest.c", line 8: warning: statement is unreachable return 0; ^ "/tmp/petsc-AzrmlS/config.functions/conftest.c", line 6: warning: variable "ierr" was set but never used int ierr; void *p; ierr = free(p); return 0; ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.functions/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVariableArgumentLists from config.functions(/global/u2/m/madams/petsc/config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.functions/conftest.c", line 7: warning: variable "l2" is used before its value is set va_copy(l1, l2); ^ "/tmp/petsc-AzrmlS/config.functions/conftest.c", line 10: warning: statement is unreachable return 0; ^ "/tmp/petsc-AzrmlS/config.functions/conftest.c", line 6: warning: variable "l1" was set but never used va_list l1, l2; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VA_COPY" to "1" ============================================================================================= TESTING: checkClassify from config.functions(/global/u2/m/madams/petsc/config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _access snprintf realpath dlsym bzero _getcwd _pipe getwd uname _lseek sleep _sleep lseek usleep dlclose gethostname clock access _snprintf dlerror fork getpagesize sbreak memalign getcwd gethostbyname readlink _set_output_format PXFGETARG strcasecmp dlopen fpresetsticky drand48 socket popen getrusage _mkdir time fpsetsticky stricmp] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _access(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char _pipe(); char getwd(); char uname(); char _lseek(); char sleep(); char _sleep(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char access(); char _snprintf(); char dlerror(); char fork(); char getpagesize(); char sbreak(); char memalign(); char getcwd(); char gethostbyname(); char readlink(); char _set_output_format(); char PXFGETARG(); char strcasecmp(); char dlopen(); char fpresetsticky(); char drand48(); char socket(); char popen(); char getrusage(); char _mkdir(); char time(); char fpsetsticky(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:119: warning: the `getwd' function is dangerous and should not be used. /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:77: undefined reference to `_access' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:107: undefined reference to `_getcwd' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:113: undefined reference to `_pipe' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:131: undefined reference to `_lseek' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:143: undefined reference to `_sleep' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:185: undefined reference to `_snprintf' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:209: undefined reference to `sbreak' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:239: undefined reference to `_set_output_format' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:245: undefined reference to `PXFGETARG' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:263: undefined reference to `fpresetsticky' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:293: undefined reference to `_mkdir' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:305: undefined reference to `fpsetsticky' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:311: undefined reference to `stricmp' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:119: warning: the `getwd' function is dangerous and should not be used. /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:77: undefined reference to `_access' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:107: undefined reference to `_getcwd' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:113: undefined reference to `_pipe' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:131: undefined reference to `_lseek' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:143: undefined reference to `_sleep' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:185: undefined reference to `_snprintf' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:209: undefined reference to `sbreak' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:239: undefined reference to `_set_output_format' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:245: undefined reference to `PXFGETARG' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:263: undefined reference to `fpresetsticky' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:293: undefined reference to `_mkdir' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:305: undefined reference to `fpsetsticky' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:311: undefined reference to `stricmp' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:119: warning: the `getwd' function is dangerous and should not be used. /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:77: undefined reference to `_access' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:107: undefined reference to `_getcwd' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:113: undefined reference to `_pipe' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:131: undefined reference to `_lseek' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:143: undefined reference to `_sleep' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:185: undefined reference to `_snprintf' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:209: undefined reference to `sbreak' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:239: undefined reference to `_set_output_format' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:245: undefined reference to `PXFGETARG' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:263: undefined reference to `fpresetsticky' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:293: undefined reference to `_mkdir' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:305: undefined reference to `fpsetsticky' /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.c:311: undefined reference to `stricmp' pgacclnk: child process exit status 1: /usr/bin/ld: Checking for functions [rand getdomainname realpath dlsym bzero uname usleep dlclose gethostname clock dlerror] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char dlerror(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_DLERROR" to "1" Checking for functions [fork getpagesize memalign gethostbyname readlink strcasecmp dlopen drand48 socket popen getrusage time] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char memalign(); char gethostbyname(); char readlink(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char popen(); char getrusage(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_access] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_access' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_access' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_access' pgacclnk: child process exit status 1: /usr/bin/ld: Checking for functions [snprintf] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_getcwd' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_getcwd' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_getcwd' pgacclnk: child process exit status 1: /usr/bin/ld: Checking for functions [_pipe] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_pipe' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_pipe' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_pipe' pgacclnk: child process exit status 1: /usr/bin/ld: Checking for functions [getwd] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used.: Checking for functions [_lseek] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_lseek' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_lseek' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_lseek' pgacclnk: child process exit status 1: /usr/bin/ld: Checking for functions [sleep] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_sleep] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_sleep' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_sleep' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_sleep' pgacclnk: child process exit status 1: /usr/bin/ld: Checking for functions [lseek] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_snprintf' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_snprintf' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_snprintf' pgacclnk: child process exit status 1: /usr/bin/ld: Checking for functions [sbreak] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `sbreak' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `sbreak' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `sbreak' pgacclnk: child process exit status 1: /usr/bin/ld: Checking for functions [getcwd] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_set_output_format' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_set_output_format' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_set_output_format' pgacclnk: child process exit status 1: /usr/bin/ld: Checking for functions [PXFGETARG] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `PXFGETARG' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `PXFGETARG' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `PXFGETARG' pgacclnk: child process exit status 1: /usr/bin/ld: Checking for functions [fpresetsticky] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `fpresetsticky' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `fpresetsticky' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `fpresetsticky' pgacclnk: child process exit status 1: /usr/bin/ld: Checking for functions [_mkdir] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_mkdir' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_mkdir' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `_mkdir' pgacclnk: child process exit status 1: /usr/bin/ld: Checking for functions [fpsetsticky] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `fpsetsticky' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `fpsetsticky' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `fpsetsticky' pgacclnk: child process exit status 1: /usr/bin/ld: Checking for functions [stricmp] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `stricmp' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `stricmp' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.functions/conftest.o: in function `main': /tmp/petsc-AzrmlS/config.functions/conftest.c:24: undefined reference to `stricmp' pgacclnk: child process exit status 1: /usr/bin/ld: ============================================================================================= TESTING: checkMmap from config.functions(/global/u2/m/madams/petsc/config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.functions/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 21.653551 ============================================================================================= TESTING: configureMemorySize from config.utilities.getResidentSetSize(/global/u2/m/madams/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() child config.utilities.getResidentSetSize 0.002146 ============================================================================================= TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(/global/u2/m/madams/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Checking for functions [] in library [''] [] ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.F90 Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Executing: ftn -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" child config.utilities.fortranCommandLine 0.690150 ============================================================================================= TESTING: configureFPTrap from config.utilities.FPTrap(/global/u2/m/madams/petsc/config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "sigfpe.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "sigfpe.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "sigfpe.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "fpxcp.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "fpxcp.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "fpxcp.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "floatingpoint.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "floatingpoint.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "floatingpoint.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: child config.utilities.FPTrap 0.248616 ============================================================================================= TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(/global/u2/m/madams/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/config.utilities.featureTestMacros/conftest.c", line 4: catastrophic error: cannot open source file "sysctl.h" #include ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-AzrmlS/config.utilities.featureTestMacros/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info)) return 0;; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 1.226288 ============================================================================================= TESTING: configureMissingUtypeTypedefs from config.utilities.missing(/global/u2/m/madams/petsc/config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.utilities.missing/conftest.c", line 6: warning: variable "foo" was declared but never referenced u_short foo; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ============================================================================================= TESTING: configureMissingFunctions from config.utilities.missing(/global/u2/m/madams/petsc/config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ============================================================================================= TESTING: configureMissingSignals from config.utilities.missing(/global/u2/m/madams/petsc/config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ============================================================================================= TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(/global/u2/m/madams/petsc/config/BuildSystem/config/utilities/missing.py:96) ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } ===== Checking linker Executing: CC -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: CC -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: configureMissingSrandPrototype from config.utilities.missing(/global/u2/m/madams/petsc/config/BuildSystem/config/utilities/missing.py:121) ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } ===== Checking linker Executing: CC -c -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: CC -o /tmp/petsc-AzrmlS/config.utilities.missing/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.utilities.missing/conftest.o -lstdc++ -ldl child config.utilities.missing 7.755592 ============================================================================================= TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/global/u2/m/madams/petsc/config/PETSc/options/sharedLibraries.py:34) ============================================================================================= TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(/global/u2/m/madams/petsc/config/PETSc/options/sharedLibraries.py:49) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).$(SL_LINKER_SUFFIX).$(2)" Defined make macro "SL_LINKER_FUNCTION" to " -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Executing: cc -v Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ============================================================================================= TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(/global/u2/m/madams/petsc/config/PETSc/options/sharedLibraries.py:93) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ============================================================================================= TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(/global/u2/m/madams/petsc/config/PETSc/options/sharedLibraries.py:99) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ============================================================================================= TESTING: checkSymbolResolution from PETSc.options.sharedLibraries(/global/u2/m/madams/petsc/config/PETSc/options/sharedLibraries.py:108) Checks that dladdr() works ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.options.sharedLibraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.options.sharedLibraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info)) return 0; ; return 0; } Defined "HAVE_DLADDR" to "1" Checking for header: cxxabi.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_macros.h" 1 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 1 3 struct __va_list_tag { unsigned int gp_offset; unsigned int fp_offset; char *overflow_arg_area; char *reg_save_area; }; # 27 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 typedef struct __va_list_tag __pgi_va_list[1]; # 41 "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include/_cplus_preinclude.h" 3 # 1 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 # 1 "/tmp/petsc-AzrmlS/config.headers/conffix.h" 1 # 3 "/tmp/petsc-AzrmlS/config.headers/conftest.c" 2 stderr: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "cxxabi.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "cxxabi.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c". : Preprocess output after filtering: "/tmp/petsc-AzrmlS/config.headers/conftest.c", line 3: error: cannot open source file "cxxabi.h" #include ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.headers/conftest.c".: child PETSc.options.sharedLibraries 0.433927 ============================================================================================= TESTING: configureScalarType from PETSc.options.scalarTypes(/global/u2/m/madams/petsc/config/PETSc/options/scalarTypes.py:39) Choose between real and complex numbers Scalar type is real ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/PETSc.options.scalarTypes/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNORMAL" to "1" ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/PETSc.options.scalarTypes/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNAN" to "1" ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/PETSc.options.scalarTypes/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISINF" to "1" ============================================================================================= TESTING: configurePrecision from PETSc.options.scalarTypes(/global/u2/m/madams/petsc/config/PETSc/options/scalarTypes.py:80) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.libraries/conftest.c", line 5: warning: variable "f" is used before its value is set static void _check_logq() { __float128 f; logq(f);; } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.compilers/conftest.c", line 5: warning: variable "f" is used before its value is set static void _check_logq() { __float128 f; logq(f);; } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } void dummy(void) {_check_logq();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.compilers -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" C compiler with quadmath library Checking Fortran works with quadmath library Checking for functions [ ] in library ['quadmath'] [] ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.F90 Possible ERROR while running compiler: stderr: NVFORTRAN-W-0031-Illegal data type length specifier for real (/tmp/petsc-AzrmlS/config.libraries/conftest.F90: 2) NVFORTRAN-W-0031-Illegal data type length specifier for s (/tmp/petsc-AzrmlS/config.libraries/conftest.F90: 2) NVFORTRAN-W-0031-Illegal data type length specifier for w (/tmp/petsc-AzrmlS/config.libraries/conftest.F90: 2) 0 inform, 3 warnings, 0 severes, 0 fatal for main Source: program main real*16 s,w; w = 2.0 ;s = cos(w) end Executing: ftn -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Fortran works with quadmath library Checking for functions [logq] in library ['quadmath'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.libraries/conftest.c", line 5: warning: variable "f" is used before its value is set static void _check_logq() { __float128 f; logq(f);; } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.compilers/conftest.c", line 5: warning: variable "f" is used before its value is set static void _check_logq() { __float128 f; logq(f);; } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } void dummy(void) {_check_logq();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" Adding ['quadmath'] to LIBS Defined "HAVE_REAL___FLOAT128" to "1" Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 5.883937 ============================================================================================= TESTING: configureMkdir from config.programs(/global/u2/m/madams/petsc/config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/mkdir...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/mkdir...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/mkdir...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/mkdir...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/mkdir...not found Checking for program /global/common/software/nersc/bin/mkdir...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/mkdir...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/mkdir...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/mkdir...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/mkdir...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ============================================================================================= TESTING: configureAutoreconf from config.programs(/global/u2/m/madams/petsc/config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/autoreconf...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/autoreconf...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/autoreconf...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/autoreconf...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/autoreconf...not found Checking for program /global/common/software/nersc/bin/autoreconf...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/autoreconf...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/autoreconf...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/autoreconf...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/autoreconf...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found Executing: ['/usr/bin/autoreconf'] autoreconf test successful! Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/libtoolize...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/libtoolize...found ============================================================================================= TESTING: configurePrograms from config.programs(/global/u2/m/madams/petsc/config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/bash...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/bash...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/bash...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/bash...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/bash...not found Checking for program /global/common/software/nersc/bin/bash...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/bash...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/bash...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/bash...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/bash...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/bash...not found Checking for program /usr/local/bin/bash...not found Checking for program /usr/bin/bash...not found Checking for program /bin/bash...found Defined make macro "SHELL" to "/bin/bash" Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/sed...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/sed...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/sed...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/sed...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/sed...not found Checking for program /global/common/software/nersc/bin/sed...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/sed...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/sed...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/sed...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/sed...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-AzrmlS/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/mv...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/mv...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/mv...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/mv...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/mv...not found Checking for program /global/common/software/nersc/bin/mv...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/mv...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/mv...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/mv...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/mv...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/cp...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/cp...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/cp...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/cp...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/cp...not found Checking for program /global/common/software/nersc/bin/cp...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/cp...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/cp...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/cp...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/cp...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/grep...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/grep...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/grep...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/grep...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/grep...not found Checking for program /global/common/software/nersc/bin/grep...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/grep...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/grep...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/grep...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/grep...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/rm...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/rm...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/rm...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/rm...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/rm...not found Checking for program /global/common/software/nersc/bin/rm...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/rm...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/rm...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/rm...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/rm...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/diff...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/diff...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/diff...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/diff...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/diff...not found Checking for program /global/common/software/nersc/bin/diff...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/diff...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/diff...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/diff...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/diff...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-AzrmlS/config.programs/diff1" "/tmp/petsc-AzrmlS/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/ps...not found Unable to find programs: ['ps'] in listing of the specific search path: ['/usr/ucb', '/usr/usb'] Warning accessing /usr/ucb gives errors: [Errno 2] No such file or directory: '/usr/ucb' Warning accessing /usr/usb gives errors: [Errno 2] No such file or directory: '/usr/usb' Defined make macro "PYTHON" to "/usr/bin/python" Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/m4...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/m4...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/m4...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/m4...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/m4...not found Checking for program /global/common/software/nersc/bin/m4...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/m4...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/m4...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/m4...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/m4...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 2.104322 ============================================================================================= TESTING: consistencyChecks from config.packages.make(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.make(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default ============================================================================================= TESTING: configureMake from config.packages.make(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/make.py:96) Check Guesses for GNU make Executing: gmake --version stdout: GNU Make 4.2.1 Built for x86_64-suse-linux-gnu Copyright (C) 1988-2016 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/gmake...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/gmake...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/gmake...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/gmake...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/gmake...not found Checking for program /global/common/software/nersc/bin/gmake...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/gmake...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/gmake...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/gmake...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/gmake...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...found Defined make macro "MAKE" to "/usr/bin/gmake" Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/make...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/make...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/make...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/make...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/make...not found Checking for program /global/common/software/nersc/bin/make...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/make...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/make...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/make...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/make...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE_USER" to "make" ============================================================================================= TESTING: setupGNUMake from config.packages.make(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/make.py:150) Setup other GNU make stuff Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "--output-sync=recurse" ============================================================================================= TESTING: configureMakeNP from config.packages.make(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/make.py:197) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 256 cores: using make_np = 97 using user-provided make_np = 8 Defined make macro "MAKE_NP" to "8" Defined make macro "MAKE_TEST_NP" to "94" Defined make macro "MAKE_LOAD" to "307.2" Defined make macro "NPMAX" to "256" child config.packages.make 0.037569 ============================================================================================= TESTING: consistencyChecks from config.packages.hip(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hip(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.hip 0.001749 ============================================================================================= TESTING: consistencyChecks from config.packages.X(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.X(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.X(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:928) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Compiler specific search X: [] ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library [] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_XSetWMName': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `XSetWMName' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_XSetWMName': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `XSetWMName' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_XSetWMName': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `XSetWMName' pgacclnk: child process exit status 1: /usr/bin/ld: Checking for library in Compiler specific search X: ['libX11.a'] ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['libX11.a'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lX11 -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } void dummy(void) {_check_XSetWMName();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lX11 -lquadmath -lstdc++ -ldl Defined "HAVE_LIBX11" to "1" Checking for optional headers [] in Compiler specific search X: [] ============================================================================================= TESTING: checkInclude from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['X11/Xlib.h'] in Compiler specific search X: [] ============================================================================================= TESTING: checkInclude from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['X11/Xlib.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['X11/Xlib.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.X(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version For x unable to run preprocessor to obtain version information, skipping version check ============================================================================================= TESTING: checkSharedLibrary from config.packages.X(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.X 2.440639 ============================================================================================= TESTING: consistencyChecks from config.packages.hwloc(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hwloc(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.hwloc 0.002315 ============================================================================================= TESTING: consistencyChecks from config.packages.thrust(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.thrust(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.thrust 0.001298 ============================================================================================= TESTING: consistencyChecks from config.packages.cuda(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.cuda(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.cuda(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/cuda.py:243) Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc...found Defined make macro "SYSTEMNVCC" to "/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc" ================================================================================== Checking for a functional cuda Checking for library in Compiler specific search CUDA: [] ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [cublasInit cufftDestroy] in library [] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_cublasInit': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `cublasInit' /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_cufftDestroy': /tmp/petsc-AzrmlS/config.libraries/conftest.c:7: undefined reference to `cufftDestroy' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_cublasInit': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `cublasInit' /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_cufftDestroy': /tmp/petsc-AzrmlS/config.libraries/conftest.c:7: undefined reference to `cufftDestroy' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_cublasInit': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `cublasInit' /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_cufftDestroy': /tmp/petsc-AzrmlS/config.libraries/conftest.c:7: undefined reference to `cufftDestroy' pgacclnk: child process exit status 1: /usr/bin/ld: Checking for library in Compiler specific search CUDA: ['libcudart.a', 'libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', 'libcuda.so'] ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [cublasInit cufftDestroy] in library ['libcudart.a', 'libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', 'libcuda.so'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand -lcuda -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lcudart /usr/bin/ld: cannot find -lcufft /usr/bin/ld: cannot find -lcublas /usr/bin/ld: cannot find -lcusparse /usr/bin/ld: cannot find -lcusolver /usr/bin/ld: cannot find -lcurand pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: cannot find -lcudart /usr/bin/ld: cannot find -lcufft /usr/bin/ld: cannot find -lcublas /usr/bin/ld: cannot find -lcusparse /usr/bin/ld: cannot find -lcusolver /usr/bin/ld: cannot find -lcurand pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: cannot find -lcudart /usr/bin/ld: cannot find -lcufft /usr/bin/ld: cannot find -lcublas /usr/bin/ld: cannot find -lcusparse /usr/bin/ld: cannot find -lcusolver /usr/bin/ld: cannot find -lcurand pgacclnk: child process exit status 1: /usr/bin/ld: Checking for library in Compiler specific search CUDA: ['cudart.lib', 'cufft.lib', 'cublas.lib', 'cusparse.lib', 'cusolver.lib', 'curand.lib', 'cuda.lib'] ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [cublasInit cufftDestroy] in library ['cudart.lib', 'cufft.lib', 'cublas.lib', 'cusparse.lib', 'cusolver.lib', 'curand.lib', 'cuda.lib'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o cudart.lib cufft.lib cublas.lib cusparse.lib cusolver.lib curand.lib cuda.lib -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find cudart.lib: No such file or directory /usr/bin/ld: cannot find cufft.lib: No such file or directory /usr/bin/ld: cannot find cublas.lib: No such file or directory /usr/bin/ld: cannot find cusparse.lib: No such file or directory /usr/bin/ld: cannot find cusolver.lib: No such file or directory /usr/bin/ld: cannot find curand.lib: No such file or directory /usr/bin/ld: cannot find cuda.lib: No such file or directory pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: cannot find cudart.lib: No such file or directory /usr/bin/ld: cannot find cufft.lib: No such file or directory /usr/bin/ld: cannot find cublas.lib: No such file or directory /usr/bin/ld: cannot find cusparse.lib: No such file or directory /usr/bin/ld: cannot find cusolver.lib: No such file or directory /usr/bin/ld: cannot find curand.lib: No such file or directory /usr/bin/ld: cannot find cuda.lib: No such file or directory pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: cannot find cudart.lib: No such file or directory /usr/bin/ld: cannot find cufft.lib: No such file or directory /usr/bin/ld: cannot find cublas.lib: No such file or directory /usr/bin/ld: cannot find cusparse.lib: No such file or directory /usr/bin/ld: cannot find cusolver.lib: No such file or directory /usr/bin/ld: cannot find curand.lib: No such file or directory /usr/bin/ld: cannot find cuda.lib: No such file or directory pgacclnk: child process exit status 1: /usr/bin/ld: CUDA: DirPath not found.. skipping: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib Checking for library in Package specific search directory CUDA: ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', 'libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so'] Contents of /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda: ['10.2', '11.0', '11.4', 'bin', 'include', 'lib64', 'nvvm'] Contents /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64: ['libOpenCL.so', 'libOpenCL.so.1', 'libOpenCL.so.1.0', 'libOpenCL.so.1.0.0', 'libaccinj64.so', 'libaccinj64.so.11.4', 'libaccinj64.so.11.4.100', 'libcudadevrt.a', 'libcudart.so', 'libcudart.so.11.0', 'libcudart.so.11.4.108', 'libcudart_static.a', 'libcufilt.a', 'libcuinj64.so', 'libcuinj64.so.11.4', 'libcuinj64.so.11.4.100', 'libculibos.a', 'libcurand.so', 'libcurand.so.10', 'libcurand.so.10.2.5.100', 'libcurand_static.a', 'libnppc.so', 'libnppc.so.11', 'libnppc.so.11.4.0.90', 'libnppc_static.a', 'libnppial.so', 'libnppial.so.11', 'libnppial.so.11.4.0.90', 'libnppial_static.a', 'libnppicc.so', 'libnppicc.so.11', 'libnppicc.so.11.4.0.90', 'libnppicc_static.a', 'libnppidei.so', 'libnppidei.so.11', 'libnppidei.so.11.4.0.90', 'libnppidei_static.a', 'libnppif.so', 'libnppif.so.11', 'libnppif.so.11.4.0.90', 'libnppif_static.a', 'libnppig.so', 'libnppig.so.11', 'libnppig.so.11.4.0.90', 'libnppig_static.a', 'libnppim.so', 'libnppim.so.11', 'libnppim.so.11.4.0.90', 'libnppim_static.a', 'libnppist.so', 'libnppist.so.11', 'libnppist.so.11.4.0.90', 'libnppist_static.a', 'libnppisu.so', 'libnppisu.so.11', 'libnppisu.so.11.4.0.90', 'libnppisu_static.a', 'libnppitc.so', 'libnppitc.so.11', 'libnppitc.so.11.4.0.90', 'libnppitc_static.a', 'libnpps.so', 'libnpps.so.11', 'libnpps.so.11.4.0.90', 'libnpps_static.a', 'libnvToolsExt.so', 'libnvToolsExt.so.1', 'libnvToolsExt.so.1.0.0', 'libnvjpeg.so', 'libnvjpeg.so.11', 'libnvjpeg.so.11.5.2.100', 'libnvjpeg_static.a', 'libnvptxcompiler_static.a', 'libnvrtc-builtins.so', 'libnvrtc-builtins.so.11.4', 'libnvrtc-builtins.so.11.4.100', 'libnvrtc.so', 'libnvrtc.so.11.2', 'libnvrtc.so.11.4.100', 'stubs'] ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [cublasInit cufftDestroy] in library ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', 'libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so'] [] Checking directory of requested libraries:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 for first library:libcudart. Files in directory:['libOpenCL.so', 'libOpenCL.so.1', 'libOpenCL.so.1.0', 'libOpenCL.so.1.0.0', 'libaccinj64.so', 'libaccinj64.so.11.4', 'libaccinj64.so.11.4.100', 'libcudadevrt.a', 'libcudart.so', 'libcudart.so.11.0', 'libcudart.so.11.4.108', 'libcudart_static.a', 'libcufilt.a', 'libcuinj64.so', 'libcuinj64.so.11.4', 'libcuinj64.so.11.4.100', 'libculibos.a', 'libcurand.so', 'libcurand.so.10', 'libcurand.so.10.2.5.100', 'libcurand_static.a', 'libnppc.so', 'libnppc.so.11', 'libnppc.so.11.4.0.90', 'libnppc_static.a', 'libnppial.so', 'libnppial.so.11', 'libnppial.so.11.4.0.90', 'libnppial_static.a', 'libnppicc.so', 'libnppicc.so.11', 'libnppicc.so.11.4.0.90', 'libnppicc_static.a', 'libnppidei.so', 'libnppidei.so.11', 'libnppidei.so.11.4.0.90', 'libnppidei_static.a', 'libnppif.so', 'libnppif.so.11', 'libnppif.so.11.4.0.90', 'libnppif_static.a', 'libnppig.so', 'libnppig.so.11', 'libnppig.so.11.4.0.90', 'libnppig_static.a', 'libnppim.so', 'libnppim.so.11', 'libnppim.so.11.4.0.90', 'libnppim_static.a', 'libnppist.so', 'libnppist.so.11', 'libnppist.so.11.4.0.90', 'libnppist_static.a', 'libnppisu.so', 'libnppisu.so.11', 'libnppisu.so.11.4.0.90', 'libnppisu_static.a', 'libnppitc.so', 'libnppitc.so.11', 'libnppitc.so.11.4.0.90', 'libnppitc_static.a', 'libnpps.so', 'libnpps.so.11', 'libnpps.so.11.4.0.90', 'libnpps_static.a', 'libnvToolsExt.so', 'libnvToolsExt.so.1', 'libnvToolsExt.so.1.0.0', 'libnvjpeg.so', 'libnvjpeg.so.11', 'libnvjpeg.so.11.5.2.100', 'libnvjpeg_static.a', 'libnvptxcompiler_static.a', 'libnvrtc-builtins.so', 'libnvrtc-builtins.so.11.4', 'libnvrtc-builtins.so.11.4.100', 'libnvrtc.so', 'libnvrtc.so.11.2', 'libnvrtc.so.11.4.100', 'stubs'] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lcufft /usr/bin/ld: cannot find -lcublas /usr/bin/ld: cannot find -lcusparse /usr/bin/ld: cannot find -lcusolver pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: cannot find -lcufft /usr/bin/ld: cannot find -lcublas /usr/bin/ld: cannot find -lcusparse /usr/bin/ld: cannot find -lcusolver pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: cannot find -lcufft /usr/bin/ld: cannot find -lcublas /usr/bin/ld: cannot find -lcusparse /usr/bin/ld: cannot find -lcusolver pgacclnk: child process exit status 1: /usr/bin/ld: Checking for library in Package specific search directory CUDA: ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/cudart.lib', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/cufft.lib', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/cublas.lib', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/cusparse.lib', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/cusolver.lib', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/curand.lib', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/cuda.lib'] Contents of /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda: ['10.2', '11.0', '11.4', 'bin', 'include', 'lib64', 'nvvm'] Contents /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64: ['libOpenCL.so', 'libOpenCL.so.1', 'libOpenCL.so.1.0', 'libOpenCL.so.1.0.0', 'libaccinj64.so', 'libaccinj64.so.11.4', 'libaccinj64.so.11.4.100', 'libcudadevrt.a', 'libcudart.so', 'libcudart.so.11.0', 'libcudart.so.11.4.108', 'libcudart_static.a', 'libcufilt.a', 'libcuinj64.so', 'libcuinj64.so.11.4', 'libcuinj64.so.11.4.100', 'libculibos.a', 'libcurand.so', 'libcurand.so.10', 'libcurand.so.10.2.5.100', 'libcurand_static.a', 'libnppc.so', 'libnppc.so.11', 'libnppc.so.11.4.0.90', 'libnppc_static.a', 'libnppial.so', 'libnppial.so.11', 'libnppial.so.11.4.0.90', 'libnppial_static.a', 'libnppicc.so', 'libnppicc.so.11', 'libnppicc.so.11.4.0.90', 'libnppicc_static.a', 'libnppidei.so', 'libnppidei.so.11', 'libnppidei.so.11.4.0.90', 'libnppidei_static.a', 'libnppif.so', 'libnppif.so.11', 'libnppif.so.11.4.0.90', 'libnppif_static.a', 'libnppig.so', 'libnppig.so.11', 'libnppig.so.11.4.0.90', 'libnppig_static.a', 'libnppim.so', 'libnppim.so.11', 'libnppim.so.11.4.0.90', 'libnppim_static.a', 'libnppist.so', 'libnppist.so.11', 'libnppist.so.11.4.0.90', 'libnppist_static.a', 'libnppisu.so', 'libnppisu.so.11', 'libnppisu.so.11.4.0.90', 'libnppisu_static.a', 'libnppitc.so', 'libnppitc.so.11', 'libnppitc.so.11.4.0.90', 'libnppitc_static.a', 'libnpps.so', 'libnpps.so.11', 'libnpps.so.11.4.0.90', 'libnpps_static.a', 'libnvToolsExt.so', 'libnvToolsExt.so.1', 'libnvToolsExt.so.1.0.0', 'libnvjpeg.so', 'libnvjpeg.so.11', 'libnvjpeg.so.11.5.2.100', 'libnvjpeg_static.a', 'libnvptxcompiler_static.a', 'libnvrtc-builtins.so', 'libnvrtc-builtins.so.11.4', 'libnvrtc-builtins.so.11.4.100', 'libnvrtc.so', 'libnvrtc.so.11.2', 'libnvrtc.so.11.4.100', 'stubs'] ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [cublasInit cufftDestroy] in library ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/cudart.lib', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/cufft.lib', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/cublas.lib', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/cusparse.lib', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/cusolver.lib', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/curand.lib', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/cuda.lib'] [] Checking directory of requested libraries:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 for first library:cudart.li Files in directory:['libOpenCL.so', 'libOpenCL.so.1', 'libOpenCL.so.1.0', 'libOpenCL.so.1.0.0', 'libaccinj64.so', 'libaccinj64.so.11.4', 'libaccinj64.so.11.4.100', 'libcudadevrt.a', 'libcudart.so', 'libcudart.so.11.0', 'libcudart.so.11.4.108', 'libcudart_static.a', 'libcufilt.a', 'libcuinj64.so', 'libcuinj64.so.11.4', 'libcuinj64.so.11.4.100', 'libculibos.a', 'libcurand.so', 'libcurand.so.10', 'libcurand.so.10.2.5.100', 'libcurand_static.a', 'libnppc.so', 'libnppc.so.11', 'libnppc.so.11.4.0.90', 'libnppc_static.a', 'libnppial.so', 'libnppial.so.11', 'libnppial.so.11.4.0.90', 'libnppial_static.a', 'libnppicc.so', 'libnppicc.so.11', 'libnppicc.so.11.4.0.90', 'libnppicc_static.a', 'libnppidei.so', 'libnppidei.so.11', 'libnppidei.so.11.4.0.90', 'libnppidei_static.a', 'libnppif.so', 'libnppif.so.11', 'libnppif.so.11.4.0.90', 'libnppif_static.a', 'libnppig.so', 'libnppig.so.11', 'libnppig.so.11.4.0.90', 'libnppig_static.a', 'libnppim.so', 'libnppim.so.11', 'libnppim.so.11.4.0.90', 'libnppim_static.a', 'libnppist.so', 'libnppist.so.11', 'libnppist.so.11.4.0.90', 'libnppist_static.a', 'libnppisu.so', 'libnppisu.so.11', 'libnppisu.so.11.4.0.90', 'libnppisu_static.a', 'libnppitc.so', 'libnppitc.so.11', 'libnppitc.so.11.4.0.90', 'libnppitc_static.a', 'libnpps.so', 'libnpps.so.11', 'libnpps.so.11.4.0.90', 'libnpps_static.a', 'libnvToolsExt.so', 'libnvToolsExt.so.1', 'libnvToolsExt.so.1.0.0', 'libnvjpeg.so', 'libnvjpeg.so.11', 'libnvjpeg.so.11.5.2.100', 'libnvjpeg_static.a', 'libnvptxcompiler_static.a', 'libnvrtc-builtins.so', 'libnvrtc-builtins.so.11.4', 'libnvrtc-builtins.so.11.4.100', 'libnvrtc.so', 'libnvrtc.so.11.2', 'libnvrtc.so.11.4.100', 'stubs'] Checking for library in Package specific search directory CUDA: ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64/libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so'] Contents of /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda: ['10.2', '11.0', '11.4', 'bin', 'include', 'lib64', 'nvvm'] Contents /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64: ['libOpenCL.so', 'libOpenCL.so.1', 'libOpenCL.so.1.0', 'libOpenCL.so.1.0.0', 'libaccinj64.so', 'libaccinj64.so.11.4', 'libaccinj64.so.11.4.100', 'libcudadevrt.a', 'libcudart.so', 'libcudart.so.11.0', 'libcudart.so.11.4.108', 'libcudart_static.a', 'libcufilt.a', 'libcuinj64.so', 'libcuinj64.so.11.4', 'libcuinj64.so.11.4.100', 'libculibos.a', 'libcurand.so', 'libcurand.so.10', 'libcurand.so.10.2.5.100', 'libcurand_static.a', 'libnppc.so', 'libnppc.so.11', 'libnppc.so.11.4.0.90', 'libnppc_static.a', 'libnppial.so', 'libnppial.so.11', 'libnppial.so.11.4.0.90', 'libnppial_static.a', 'libnppicc.so', 'libnppicc.so.11', 'libnppicc.so.11.4.0.90', 'libnppicc_static.a', 'libnppidei.so', 'libnppidei.so.11', 'libnppidei.so.11.4.0.90', 'libnppidei_static.a', 'libnppif.so', 'libnppif.so.11', 'libnppif.so.11.4.0.90', 'libnppif_static.a', 'libnppig.so', 'libnppig.so.11', 'libnppig.so.11.4.0.90', 'libnppig_static.a', 'libnppim.so', 'libnppim.so.11', 'libnppim.so.11.4.0.90', 'libnppim_static.a', 'libnppist.so', 'libnppist.so.11', 'libnppist.so.11.4.0.90', 'libnppist_static.a', 'libnppisu.so', 'libnppisu.so.11', 'libnppisu.so.11.4.0.90', 'libnppisu_static.a', 'libnppitc.so', 'libnppitc.so.11', 'libnppitc.so.11.4.0.90', 'libnppitc_static.a', 'libnpps.so', 'libnpps.so.11', 'libnpps.so.11.4.0.90', 'libnpps_static.a', 'libnvToolsExt.so', 'libnvToolsExt.so.1', 'libnvToolsExt.so.1.0.0', 'libnvjpeg.so', 'libnvjpeg.so.11', 'libnvjpeg.so.11.5.2.100', 'libnvjpeg_static.a', 'libnvptxcompiler_static.a', 'libnvrtc-builtins.so', 'libnvrtc-builtins.so.11.4', 'libnvrtc-builtins.so.11.4.100', 'libnvrtc.so', 'libnvrtc.so.11.2', 'libnvrtc.so.11.4.100', 'stubs'] ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [cublasInit cufftDestroy] in library ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64/libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so'] [] Checking directory of requested libraries:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 for first library:libcufft. Files in directory:['libcublas.so', 'libcublas.so.11', 'libcublas.so.11.5.4.8', 'libcublasLt.so', 'libcublasLt.so.11', 'libcublasLt.so.11.5.4.8', 'libcublasLt_static.a', 'libcublas_static.a', 'libcufft.so', 'libcufft.so.10', 'libcufft.so.10.5.2.100', 'libcufft_static.a', 'libcufft_static_nocallback.a', 'libcufftw.so', 'libcufftw.so.10', 'libcufftw.so.10.5.2.100', 'libcufftw_static.a', 'libcurand.so', 'libcurand.so.10', 'libcurand.so.10.2.5.100', 'libcurand_static.a', 'libcusolver.so', 'libcusolver.so.11', 'libcusolver.so.11.2.0.100', 'libcusolverMg.so', 'libcusolverMg.so.11', 'libcusolverMg.so.11.2.0.100', 'libcusolver_static.a', 'libcusparse.so', 'libcusparse.so.11', 'libcusparse.so.11.6.0.100', 'libcusparse_static.a', 'libcutensor.so', 'libcutensor.so.1', 'libcutensor.so.1.3.1', 'libcutensor_static.a', 'liblapack_static.a', 'libmetis_static.a', 'libnvblas.so', 'libnvblas.so.11', 'libnvblas.so.11.5.4.8', 'stubs'] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } void dummy(void) {_check_cublasInit(); _check_cufftDestroy();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -lquadmath -lstdc++ -ldl Defined "HAVE_LIBCUFFT" to "1" Defined "HAVE_LIBCUBLAS" to "1" Defined "HAVE_LIBCUSPARSE" to "1" Defined "HAVE_LIBCUSOLVER" to "1" Defined "HAVE_LIBCURAND" to "1" Defined "HAVE_LIBCUDART" to "1" Defined "HAVE_LIBCUDA" to "1" ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [cusolverDnDpotri] in library ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64/libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so'] [] Checking directory of requested libraries:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 for first library:libcufft. Files in directory:['libcublas.so', 'libcublas.so.11', 'libcublas.so.11.5.4.8', 'libcublasLt.so', 'libcublasLt.so.11', 'libcublasLt.so.11.5.4.8', 'libcublasLt_static.a', 'libcublas_static.a', 'libcufft.so', 'libcufft.so.10', 'libcufft.so.10.5.2.100', 'libcufft_static.a', 'libcufft_static_nocallback.a', 'libcufftw.so', 'libcufftw.so.10', 'libcufftw.so.10.5.2.100', 'libcufftw_static.a', 'libcurand.so', 'libcurand.so.10', 'libcurand.so.10.2.5.100', 'libcurand_static.a', 'libcusolver.so', 'libcusolver.so.11', 'libcusolver.so.11.2.0.100', 'libcusolverMg.so', 'libcusolverMg.so.11', 'libcusolverMg.so.11.2.0.100', 'libcusolver_static.a', 'libcusparse.so', 'libcusparse.so.11', 'libcusparse.so.11.6.0.100', 'libcusparse_static.a', 'libcutensor.so', 'libcutensor.so.1', 'libcutensor.so.1.3.1', 'libcutensor_static.a', 'liblapack_static.a', 'libmetis_static.a', 'libnvblas.so', 'libnvblas.so.11', 'libnvblas.so.11.5.4.8', 'stubs'] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cusolverDnDpotri(); static void _check_cusolverDnDpotri() { cusolverDnDpotri(); } int main() { _check_cusolverDnDpotri();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cusolverDnDpotri(); static void _check_cusolverDnDpotri() { cusolverDnDpotri(); } void dummy(void) {_check_cusolverDnDpotri();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -lquadmath -lstdc++ -ldl Defined "HAVE_CUSOLVERDNDPOTRI" to "1" Checking for optional headers [] in Package specific search directory CUDA: ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include'] ============================================================================================= TESTING: checkInclude from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include'] Found header files [] in ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include'] Checking for headers ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'curand.h', 'thrust/version.h'] in Package specific search directory CUDA: ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include'] ============================================================================================= TESTING: checkInclude from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'curand.h', 'thrust/version.h'] in ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include'] Checking include with compiler flags var CUDAPPFLAGS ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers -Wno-deprecated-gpu-targets -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include /tmp/petsc-AzrmlS/config.headers/conftest.cu Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CUDAPPFLAGS ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers -Wno-deprecated-gpu-targets -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include /tmp/petsc-AzrmlS/config.headers/conftest.cu Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CUDAPPFLAGS ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers -Wno-deprecated-gpu-targets -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include /tmp/petsc-AzrmlS/config.headers/conftest.cu Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CUDAPPFLAGS ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers -Wno-deprecated-gpu-targets -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include /tmp/petsc-AzrmlS/config.headers/conftest.cu Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CUDAPPFLAGS ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers -Wno-deprecated-gpu-targets -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include /tmp/petsc-AzrmlS/config.headers/conftest.cu Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CUDAPPFLAGS ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers -Wno-deprecated-gpu-targets -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include /tmp/petsc-AzrmlS/config.headers/conftest.cu Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'curand.h', 'thrust/version.h'] in ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include'] Checking for size of type: teststruct ===== Checking compiler Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.setCompilers -Xcompiler -fPIC -O3 -std=c++17 -Wno-deprecated-gpu-targets /tmp/petsc-AzrmlS/config.types/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include typedef struct {double a; int b;} teststruct; char assert_sizeof[(sizeof(teststruct)==16)*2-1]; Checking for size of type: teststruct ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include typedef struct {double a; int b;} teststruct; char assert_sizeof[(sizeof(teststruct)==16)*2-1]; Checking if sizeof(void*) in CUDA is the same as with regular compiler Checking for size of type: void * ===== Checking compiler Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -Xcompiler -fPIC -O3 -std=c++17 -Wno-deprecated-gpu-targets /tmp/petsc-AzrmlS/config.types/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "CUDA_GENERATION" to "80" Defined "HAVE_CUDA" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "cuda.h" petscpkgver(CUDA_VERSION); Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.packages.cuda -I/tmp/petsc-AzrmlS/config.headers -Wno-deprecated-gpu-targets -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include /tmp/petsc-AzrmlS/config.packages.cuda/conftest.cu For cuda need 7.5 <= 11.4 <= Defined "HAVE_CUDA_VERSION_11PLUS" to "1" Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -Xcompiler -fPIC -O3 -std=c++17 -gencode arch=compute_80,code=sm_80 --dryrun dummy.cu 2>&1 | grep D__CUDACC__ | head -1 | cut -f2 -d" " stdout: gcc Determined the compiler nvcc uses is gcc PETSc C compiler cc PETSc C++ compiler CC No CUDA_CXXFLAGS available Defined make macro "CUDA_CXX" to "gcc" Executing: CC --help | head -n 20 stdout: Usage: CC [options] file... Options: -[no-]add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options and new dtags are disabled. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]add-rpath-shared Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in specific versions of libraries at runtime for generated shared libraries. (Off by default.) -[no-]add-runpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options and new dtags are enabled. ============================================================================================= TESTING: checkVersion from config.packages.cuda(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "cuda.h" petscpkgver(CUDA_VERSION); Executing: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.packages.cuda -Wno-deprecated-gpu-targets -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include /tmp/petsc-AzrmlS/config.packages.cuda/conftest.cu For cuda need 7.5 <= 11.4 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.cuda(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.cuda 10.714861 ============================================================================================= TESTING: consistencyChecks from config.packages.OpenMPI(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.OpenMPI(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.002113 ============================================================================================= TESTING: consistencyChecks from config.packages.MPICH(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MPICH(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.001520 ============================================================================================= TESTING: consistencyChecks from config.packages.MPI(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.MPI(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.MPI(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/MPI.py:786) ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64/libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so'] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } void dummy(void) {_check_MPI_Init(); _check_MPI_Comm_create();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -lquadmath -lstdc++ -ldl Checking for optional headers [] in Compiler specific search MPI: [] ============================================================================================= TESTING: checkInclude from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['mpi.h'] in Compiler specific search MPI: [] ============================================================================================= TESTING: checkInclude from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in [] Checking include with compiler flags var CPPFLAGS ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.headers -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['mpi.h'] in [] Defined "HAVE_MPI_F90MODULE_VISIBILITY" to "1" ============================================================================================= TESTING: checkMPIDistro from config.packages.MPI(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/MPI.py:602) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/config.packages.MPI/conftest.c", line 4: error: identifier "I_MPI_VERSION" is undefined const char *mpich_ver = I_MPI_VERSION; ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.packages.MPI/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/config.packages.MPI/conftest.c", line 4: error: identifier "I_MPI_NUMVERSION" is undefined int mpich_ver = I_MPI_NUMVERSION; ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.packages.MPI/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/config.packages.MPI/conftest.c", line 4: error: identifier "MVAPICH2_NUMVERSION" is undefined int mpich_ver = MVAPICH2_NUMVERSION; ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/config.packages.MPI/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Defined "HAVE_MPICH_NUMVERSION" to "30400002" Executing: uname -s stdout: Linux ============================================================================================= TESTING: configureMPI2 from config.packages.MPI(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/MPI.py:379) Check for functions added to the interface in MPI-2 ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={MPI_INT,MPI_DOUBLE}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.packages.MPI/conftest.c", line 6: warning: variable "win" is used before its value is set int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_ONE_SIDED" to "1" ============================================================================================= TESTING: configureMPI3 from config.packages.MPI(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/MPI.py:426) Check for functions added to the interface in MPI-3 ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Win_allocate(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_attach(win,baseptr,size)); if (MPI_Win_create_dynamic(MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_FEATURE_DYNAMIC_WINDOW" to "1" ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.packages.MPI/conftest.c", line 6: warning: variable "win" is used before its value is set int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.packages.MPI/conftest.c", line 6: warning: variable "win" is used before its value is set int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_RGET" to "1" ============================================================================================= TESTING: configureMPIEXEC from config.packages.MPI(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/MPI.py:188) Checking for location of mpiexec Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/srun...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/srun...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/srun...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/srun...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/srun...not found Checking for program /global/common/software/nersc/bin/srun...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/srun...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/srun...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/srun...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/srun...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/srun...not found Checking for program /usr/local/bin/srun...not found Checking for program /usr/bin/srun...found Defined make macro "MPIEXEC" to "srun" Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/srun...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/srun...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/srun...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/srun...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/srun...not found Checking for program /global/common/software/nersc/bin/srun...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/srun...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/srun...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/srun...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/srun...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/srun...not found Checking for program /usr/local/bin/srun...not found Checking for program /usr/bin/srun...found Running Executable with threads to time it out at 120 Executing: srun -n 1 printenv Unable to run srun with option "-n 1 printenv" This could be ok, some MPI implementations such as SGI produce a non-zero status with non-MPI programs srun: error: Job request does not match any supported policy. srun: error: Unable to allocate resources: Unspecified error Defined make macro "MPIEXEC" to "/usr/bin/srun" Checking for program /usr/libexec/ApplicationFirewall/socketfilterfw...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/socketfilterfw...not found Unable to find programs: ['socketfilterfw'] in listing of the specific search path: ['/usr/libexec/ApplicationFirewall'] Warning accessing /usr/libexec/ApplicationFirewall gives errors: [Errno 2] No such file or directory: '/usr/libexec/ApplicationFirewall' Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/hostname...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/hostname...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/hostname...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/hostname...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/hostname...not found Checking for program /global/common/software/nersc/bin/hostname...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/hostname...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/hostname...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/hostname...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/hostname...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/bin/hostname...found Defined make macro "HOSTNAME" to "hostname" Running Executable with threads to time it out at 60 Executing: hostname stdout: login18 Return code from hostname: 0 Hostname works, running network checks Checking for program /sbin/ping...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/ping...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/ping...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/ping...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/ping...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/ping...not found Checking for program /global/common/software/nersc/bin/ping...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/ping...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/ping...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/ping...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/ping...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/ping...not found Checking for program /usr/local/bin/ping...not found Checking for program /usr/bin/ping...found Defined make macro "PING" to "ping" Executing: uname -s stdout: Linux Running Executable with threads to time it out at 60 Executing: ping -c 2 login18 stdout: PING login18 (10.252.1.68) 56(84) bytes of data. 64 bytes from login18 (10.252.1.68): icmp_seq=1 ttl=64 time=0.043 ms 64 bytes from login18 (10.252.1.68): icmp_seq=2 ttl=64 time=0.050 ms --- login18 ping statistics --- 2 packets transmitted, 2 received, 0% packet loss, time 1029ms rtt min/avg/max/mdev = 0.043/0.046/0.050/0.007 ms Return code from ping: 0 ============================================================================================= ======== Checking running linked program ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-AzrmlS/config.packages.MPI/conftest to see if it can be run Executing: /usr/bin/srun -n 1 /tmp/petsc-AzrmlS/config.packages.MPI/conftest Running Executable with threads to time it out at 120 Executing: /usr/bin/srun -n 1 /tmp/petsc-AzrmlS/config.packages.MPI/conftest ERROR while running executable: Could not execute "['/usr/bin/srun -n 1 /tmp/petsc-AzrmlS/config.packages.MPI/conftest']": srun: error: Job request does not match any supported policy. srun: error: Unable to allocate resources: Unspecified error ============================================================================================= TESTING: configureMPITypes from config.packages.MPI(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/MPI.py:483) Checking for MPI Datatype handles ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_LONG_DOUBLE" to "1" ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_INT64_T" to "1" ============================================================================================= TESTING: SGIMPICheck from config.packages.MPI(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/MPI.py:530) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_MPI_SGI_barrier': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_MPI_SGI_barrier': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_MPI_SGI_barrier': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' pgacclnk: child process exit status 1: /usr/bin/ld: SGI MPI test failure ============================================================================================= TESTING: CxxMPICheck from config.packages.MPI(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/MPI.py:540) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] ===== Checking linker Executing: CC -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/config.libraries/conftest.cc Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.libraries/conftest.cc", line 5: warning: variable "ierr" was set but never used static void _check_MPI_Finalize() { int ierr; ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Executing: CC -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/config.libraries/conftest.o -lquadmath -lstdc++ -ldl ============================================================================================= TESTING: FortranMPICheck from config.packages.MPI(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/MPI.py:556) Make sure fortran include [mpif.h] and library symbols are found Checking for fortran mpi_init() Checking for functions [] in library [] [] ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.F90 Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Executing: ftn -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Checking for mpi.mod Checking for functions [] in library [] [] ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.F90 Successful compile: Source: program main use mpi integer(kind=selected_int_kind(5)) ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Executing: ftn -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_F90MODULE" to "1" ============================================================================================= TESTING: configureIO from config.packages.MPI(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/MPI.py:578) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.packages.MPI/conftest.c", line 12: warning: variable "fh" is used before its value is set if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ "/tmp/petsc-AzrmlS/config.packages.MPI/conftest.c", line 12: warning: variable "buf" is used before its value is set if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ "/tmp/petsc-AzrmlS/config.packages.MPI/conftest.c", line 18: warning: variable "disp" is used before its value is set if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ "/tmp/petsc-AzrmlS/config.packages.MPI/conftest.c", line 18: warning: variable "info" is used before its value is set if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPIIO" to "1" ============================================================================================= TESTING: findMPIIncludeAndLib from config.packages.MPI(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/MPI.py:691) Find MPI include paths and libraries from "mpicc -show" or Cray "cc --cray-print-opts=cflags/libs" and save. Executing: cc --help stdout: Usage: cc [options] file... Options: -[no-]add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options and new dtags are disabled. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]add-rpath-shared Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in specific versions of libraries at runtime for generated shared libraries. (Off by default.) -[no-]add-runpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options and new dtags are enabled. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications, while still allowing users to use alternate versions by setting LD_LIBRARY_PATH. (Off by default.) --[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]custom-ld-script[=script] Controls whether or not CrayPE attempts to pass ld a custom linker script. If a script is provided, it will be used. Otherwise, a custom script will be used if beneficial. (On by default.) --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. cray_ld_library_path print a dynamically generated CRAY_LD_LIBRARY_PATH. libs Print library information. pcfiles Print the pcfiles that pkg-config will be called with. pkg_config_path Print PKG_CONFIG_PATH used. variables Print the variables definitions that pkg-config will be called with. -craype-verbose Print the command which is forwarded to compiler invocation. --craype-append-opt=[flag] Add 'flag' after all CrayPE generated flags. This can effectively be used to override flags set by CrayPE. --craype-prepend-opt=[flag] Add 'flag' before all CrayPE generated flags. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -[no]-gcc-rpath Controls whether or not '-Wl,-rpath=/opt/cray/pe/gcc-libs' is added to the link line when dynamically linking using GCC or CCE. This enables a user to run such an application. without setting LD_LIBRARY_PATH or loading a gcc module. (On by default.) -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE-Classic. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE-classic. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using CCE, AOCC, and GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible. -noopenmp Disables OpenMP. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. -qopenmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -qno-openmp Disables OpenMP and links in non-OpenMP libraries when possible when using Intel. Detected Cray PE wrapper compiler Executing: cc --cray-print-opts=cflags stdout: -I/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/include -I/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/include -I/opt/cray/pe/dsmml/0.2.2/dsmml//include -I/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/include Executing: cc --cray-print-opts=libs stdout: -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-no-as-needed -ldarshan -lz -Wl,--as-needed,-lsci_nvidia_mpi,--no-as-needed -Wl,--as-needed,-lsci_nvidia,--no-as-needed -ldl -Wl,--as-needed,-lmpi_nvidia,--no-as-needed -Wl,--as-needed,-ldsmml,--no-as-needed -lxpmem compilers: Checking arg -I/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/include compilers: Found include option: -I/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/include compilers: Checking arg -I/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/include compilers: Found include option: -I/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/include compilers: Checking arg -I/opt/cray/pe/dsmml/0.2.2/dsmml//include compilers: Found include option: -I/opt/cray/pe/dsmml/0.2.2/dsmml//include compilers: Checking arg -I/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/include compilers: Found include option: -I/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/include compilers: Checking arg -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib compilers: Found -L link option: -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib compilers: Checking arg -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib compilers: Found -L link option: -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib compilers: Checking arg -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib compilers: Found -L link option: -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib compilers: Checking arg -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib compilers: Found -L link option: -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib compilers: Checking arg -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 compilers: Found -L link option: -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 compilers: Checking arg -Wl,-rpath=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib compilers: Found -Wl link option: -Wl,-rpath=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib compilers: Checking arg -Wl,-no-as-needed compilers: Found -Wl link option: -Wl,-no-as-needed compilers: Checking arg -ldarshan compilers: Found -l link option: -ldarshan compilers: Checking arg -lz compilers: Found -l link option: -lz compilers: Checking arg -Wl,--as-needed,-lsci_nvidia_mpi,--no-as-needed compilers: Found -Wl link option: -Wl,--as-needed,-lsci_nvidia_mpi,--no-as-needed compilers: Checking arg -Wl,--as-needed,-lsci_nvidia,--no-as-needed compilers: Found -Wl link option: -Wl,--as-needed,-lsci_nvidia,--no-as-needed compilers: Checking arg -ldl compilers: Found -l link option: -ldl compilers: Checking arg -Wl,--as-needed,-lmpi_nvidia,--no-as-needed compilers: Found -Wl link option: -Wl,--as-needed,-lmpi_nvidia,--no-as-needed compilers: Checking arg -Wl,--as-needed,-ldsmml,--no-as-needed compilers: Found -Wl link option: -Wl,--as-needed,-ldsmml,--no-as-needed compilers: Checking arg -lxpmem compilers: Found -l link option: -lxpmem Defined make macro "MPICXX_INCLUDES" to "-I/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/include -I/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/include -I/opt/cray/pe/dsmml/0.2.2/dsmml//include -I/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/include " Defined make macro "MPICXX_LIBS" to "-L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-no-as-needed -Wl,--as-needed,-lsci_nvidia_mpi,--no-as-needed -Wl,--as-needed,-lsci_nvidia,--no-as-needed -Wl,--as-needed,-lmpi_nvidia,--no-as-needed -Wl,--as-needed,-ldsmml,--no-as-needed -ldarshan -lz -ldl -lxpmem " ============================================================================================= TESTING: PetscArchMPICheck from config.packages.MPI(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/MPI.py:761) Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64/libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so'] [] Checking directory of requested libraries:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 for first library:libcufft. Files in directory:['libcublas.so', 'libcublas.so.11', 'libcublas.so.11.5.4.8', 'libcublasLt.so', 'libcublasLt.so.11', 'libcublasLt.so.11.5.4.8', 'libcublasLt_static.a', 'libcublas_static.a', 'libcufft.so', 'libcufft.so.10', 'libcufft.so.10.5.2.100', 'libcufft_static.a', 'libcufft_static_nocallback.a', 'libcufftw.so', 'libcufftw.so.10', 'libcufftw.so.10.5.2.100', 'libcufftw_static.a', 'libcurand.so', 'libcurand.so.10', 'libcurand.so.10.2.5.100', 'libcurand_static.a', 'libcusolver.so', 'libcusolver.so.11', 'libcusolver.so.11.2.0.100', 'libcusolverMg.so', 'libcusolverMg.so.11', 'libcusolverMg.so.11.2.0.100', 'libcusolver_static.a', 'libcusparse.so', 'libcusparse.so.11', 'libcusparse.so.11.6.0.100', 'libcusparse_static.a', 'libcutensor.so', 'libcutensor.so.1', 'libcutensor.so.1.3.1', 'libcutensor_static.a', 'liblapack_static.a', 'libmetis_static.a', 'libnvblas.so', 'libnvblas.so.11', 'libnvblas.so.11.5.4.8', 'stubs'] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } void dummy(void) {_check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -lquadmath -lstdc++ -ldl Defined "HAVE_LIBCUFFT" to "1" Defined "HAVE_LIBCUBLAS" to "1" Defined "HAVE_LIBCUSPARSE" to "1" Defined "HAVE_LIBCUSOLVER" to "1" Defined "HAVE_LIBCURAND" to "1" Defined "HAVE_LIBCUDART" to "1" Defined "HAVE_LIBCUDA" to "1" Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.packages.MPI/conftest.c", line 6: warning: variable "combiner" was declared but never referenced int combiner = MPI_COMBINER_DUP;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.packages.MPI/conftest.c", line 6: warning: variable "combiner" was declared but never referenced int combiner = MPI_COMBINER_CONTIGUOUS;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.MPI/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.packages.MPI/conftest.c", line 6: warning: variable "combiner" was declared but never referenced int combiner = MPI_COMBINER_NAMED;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ============================================================================================= TESTING: checkVersion from config.packages.MPI(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" petscpkgver(MPI_VERSION); Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.packages.MPI /tmp/petsc-AzrmlS/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.MPI(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.MPI 22.201684 ============================================================================================= TESTING: consistencyChecks from config.packages.zstd(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.zstd(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.002639 ============================================================================================= TESTING: consistencyChecks from config.packages.yaml(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.yaml(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.001695 ============================================================================================= TESTING: consistencyChecks from config.packages.sycl(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sycl(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.sycl 0.001549 ============================================================================================= TESTING: consistencyChecks from config.packages.ssl(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/ssl.py:31) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ssl(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.001913 ============================================================================================= TESTING: consistencyChecks from config.packages.sprng(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sprng(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.001651 PETSc clone, checking for Sowing Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/pdflatex...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/pdflatex...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/pdflatex...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/pdflatex...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/pdflatex...not found Checking for program /global/common/software/nersc/bin/pdflatex...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/pdflatex...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/pdflatex...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/pdflatex...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/pdflatex...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/pdflatex...not found Checking for program /usr/local/bin/pdflatex...not found Checking for program /usr/bin/pdflatex...not found Checking for program /bin/pdflatex...not found Checking for program /usr/lib/mit/bin/pdflatex...not found Checking for program /opt/cray/pe/bin/pdflatex...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/pdflatex...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/bfort...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/bfort...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/bfort...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/bfort...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/bfort...not found Checking for program /global/common/software/nersc/bin/bfort...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/bfort...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/bfort...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/bfort...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/bfort...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/bfort...not found Checking for program /usr/local/bin/bfort...not found Checking for program /usr/bin/bfort...not found Checking for program /bin/bfort...not found Checking for program /usr/lib/mit/bin/bfort...not found Checking for program /opt/cray/pe/bin/bfort...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/bfort...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/doctext...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/doctext...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/doctext...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/doctext...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/doctext...not found Checking for program /global/common/software/nersc/bin/doctext...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/doctext...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/doctext...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/doctext...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/doctext...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/doctext...not found Checking for program /usr/local/bin/doctext...not found Checking for program /usr/bin/doctext...not found Checking for program /bin/doctext...not found Checking for program /usr/lib/mit/bin/doctext...not found Checking for program /opt/cray/pe/bin/doctext...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/doctext...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/mapnames...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/mapnames...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/mapnames...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/mapnames...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/mapnames...not found Checking for program /global/common/software/nersc/bin/mapnames...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/mapnames...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/mapnames...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/mapnames...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/mapnames...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/mapnames...not found Checking for program /usr/local/bin/mapnames...not found Checking for program /usr/bin/mapnames...not found Checking for program /bin/mapnames...not found Checking for program /usr/lib/mit/bin/mapnames...not found Checking for program /opt/cray/pe/bin/mapnames...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/mapnames...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/bib2html...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/bib2html...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/bib2html...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/bib2html...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/bib2html...not found Checking for program /global/common/software/nersc/bin/bib2html...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/bib2html...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/bib2html...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/bib2html...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/bib2html...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/bib2html...not found Checking for program /usr/local/bin/bib2html...not found Checking for program /usr/bin/bib2html...not found Checking for program /bin/bib2html...not found Checking for program /usr/lib/mit/bin/bib2html...not found Checking for program /opt/cray/pe/bin/bib2html...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/bib2html...not found Bfort not found. Installing sowing for FortranStubs ============================================================================================= TESTING: consistencyChecks from config.packages.sowing(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.sowing(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.sowing(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:928) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional sowing Looking for SOWING at git.sowing, hg.sowing or a directory starting with ['petsc-pkg-sowing'] Found a copy of SOWING in git.sowing Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v1.1.26-p2^{commit}'] Executing: ['git', 'rev-parse', 'v1.1.26-p2'] stdout: c88d03bfe147ba48ba29bde0e6df7de5e21baf9a Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing pkg.gitcommit Removing sowing.petscconf Executing: ['git', 'checkout', '-f', 'c88d03bfe147ba48ba29bde0e6df7de5e21baf9a'] Makefile /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/lib/petsc/conf/pkg.conf.sowing has correct checksum Commit file /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/lib/petsc/conf/pkg.gitcommit.sowing has correct checksum Do not need to rebuild SOWING Not checking for library in Download SOWING: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Download SOWING: ['/global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/include'] ============================================================================================= TESTING: checkInclude from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/include'] Found header files [] in ['/global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/include'] Checking for headers [] in Download SOWING: ['/global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/include'] ============================================================================================= TESTING: checkVersion from config.packages.sowing(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version For sowing unable to find version information since includes and version includes are missing skipping version check ============================================================================================= TESTING: checkSharedLibrary from config.packages.sowing(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared Checking for program /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/bin/bfort...found Defined make macro "BFORT" to "/global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/bin/bfort" Checking for program /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/bin/doctext...found Defined make macro "DOCTEXT" to "/global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/bin/doctext" Checking for program /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/bin/mapnames...found Defined make macro "MAPNAMES" to "/global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/bin/mapnames" Checking for program /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/bin/bib2html...found Defined make macro "BIB2HTML" to "/global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/bin/bib2html" Executing: /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/bin/bfort -version stdout: bfort (sowing) release 1.1.26 of Date unknown ============================================================================================= Running /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/bin/bfort to generate fortran stubs ============================================================================================= child config.packages.sowing 10.730073 ============================================================================================= TESTING: consistencyChecks from config.packages.revolve(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.revolve(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.002705 ============================================================================================= TESTING: consistencyChecks from config.packages.radau5(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.radau5(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.001715 ============================================================================================= TESTING: consistencyChecks from config.packages.pami(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pami(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.001576 ============================================================================================= TESTING: consistencyChecks from config.packages.opengles(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengles(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.001537 ============================================================================================= TESTING: consistencyChecks from config.packages.opencl(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opencl(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.001523 ============================================================================================= TESTING: consistencyChecks from config.packages.muparser(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.muparser(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.001656 ============================================================================================= TESTING: consistencyChecks from config.packages.mpe(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpe(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.001643 ============================================================================================= TESTING: consistencyChecks from config.packages.memkind(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.memkind(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.001626 ============================================================================================= TESTING: consistencyChecks from config.packages.libmesh(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libmesh(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/libmesh.py:69) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.002217 ============================================================================================= TESTING: consistencyChecks from config.packages.moose(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.moose(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.001689 ============================================================================================= TESTING: consistencyChecks from config.packages.libjpeg(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libjpeg(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.001628 Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/lgrind...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/lgrind...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/lgrind...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/lgrind...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/lgrind...not found Checking for program /global/common/software/nersc/bin/lgrind...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/lgrind...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/lgrind...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/lgrind...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/lgrind...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /bin/lgrind...not found Checking for program /usr/lib/mit/bin/lgrind...not found Checking for program /opt/cray/pe/bin/lgrind...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/lgrind...not found child config.packages.lgrind 0.000995 ============================================================================================= TESTING: consistencyChecks from config.packages.gsl(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.gsl(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.gsl 0.001665 child config.packages.gmsh 0.000158 ============================================================================================= TESTING: consistencyChecks from config.packages.gmp(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.gmp(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.001634 ============================================================================================= TESTING: consistencyChecks from config.packages.mpfr(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpfr(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.001655 ============================================================================================= TESTING: consistencyChecks from config.packages.giflib(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.giflib(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.001608 ============================================================================================= TESTING: consistencyChecks from config.packages.cub(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cub(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.cub 0.001657 ============================================================================================= TESTING: consistencyChecks from config.packages.ctetgen(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ctetgen(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.ctetgen 0.001608 ============================================================================================= TESTING: consistencyChecks from config.packages.concurrencykit(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.concurrencykit(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.002291 ============================================================================================= TESTING: consistencyChecks from config.packages.cams(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cams(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.cams 0.001628 ============================================================================================= TESTING: locateC2html from config.packages.c2html(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/c2html.py:30) Looking for default C2html executable Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/c2html...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/c2html...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/c2html...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/c2html...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/c2html...not found Checking for program /global/common/software/nersc/bin/c2html...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/c2html...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/c2html...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/c2html...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/c2html...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/lib/mit/bin/c2html...not found Checking for program /opt/cray/pe/bin/c2html...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/c2html...not found child config.packages.c2html 0.002017 ============================================================================================= TESTING: consistencyChecks from config.packages.boost(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.boost(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.001689 ============================================================================================= TESTING: consistencyChecks from config.packages.silo(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.silo(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.001694 ============================================================================================= TESTING: consistencyChecks from config.packages.Random123(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Random123(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.001662 ============================================================================================= TESTING: consistencyChecks from config.packages.PARTY(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PARTY(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.001688 ============================================================================================= TESTING: consistencyChecks from config.packages.NVSHMEM(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.NVSHMEM(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.NVSHMEM 0.001495 ============================================================================================= TESTING: consistencyChecks from config.packages.Matlab(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Matlab(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.001365 ============================================================================================= TESTING: consistencyChecks from config.packages.MatlabEngine(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.001383 ============================================================================================= TESTING: consistencyChecks from config.packages.Mathematica(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Mathematica(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.001393 ============================================================================================= TESTING: consistencyChecks from config.packages.regex(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.regex(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.regex(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:928) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } void dummy(void) {_check_regexec(); _check_regcomp(); _check_regfree();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lquadmath -lstdc++ -ldl Checking for optional headers [] in Compiler specific search REGEX: [] ============================================================================================= TESTING: checkInclude from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['regex.h'] in Compiler specific search REGEX: [] ============================================================================================= TESTING: checkInclude from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['regex.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.regex(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.regex(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.regex 1.741648 ============================================================================================= TESTING: consistencyChecks from config.packages.libceed(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libceed(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.002704 Defined "PYTHON_EXE" to ""/usr/bin/python"" Executing: /usr/bin/python -c "import Cython" Executing: /usr/bin/python -c "import numpy" child config.packages.python 0.042365 ============================================================================================= TESTING: consistencyChecks from config.packages.petsc4py(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.petsc4py(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/petsc4py.py:129) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] Defined make rule "petsc4pytest" with dependencies "" and code [] child config.packages.petsc4py 0.003405 ============================================================================================= TESTING: consistencyChecks from config.packages.mpi4py(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpi4py(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.mpi4py 0.001804 ============================================================================================= TESTING: consistencyChecks from config.packages.slepc(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.slepc(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/slepc.py:95) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.002249 ============================================================================================= TESTING: consistencyChecks from config.packages.opengl(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengl(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.001618 ============================================================================================= TESTING: consistencyChecks from config.packages.glut(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.glut(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.001528 ============================================================================================= TESTING: consistencyChecks from config.packages.GLVis(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.GLVis(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.GLVis 0.001612 ============================================================================================= TESTING: consistencyChecks from config.packages.CoDiPack(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.CoDiPack(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.001658 ============================================================================================= TESTING: consistencyChecks from config.packages.adblaslapack(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.adblaslapack(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.001611 child config.packages.cxxlibs 0.000021 ============================================================================================= TESTING: locateCMake from config.packages.cmake(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/cmake.py:51) Looking for default CMake executable Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/cmake...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/cmake...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/cmake...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/cmake...found Defined make macro "CMAKE" to "/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/cmake" Looking for default CTest executable Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/ctest...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/ctest...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/ctest...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/ctest...found Defined make macro "CTEST" to "/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/ctest" Executing: /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/cmake --version stdout: cmake version 3.22.0 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.22.0 child config.packages.cmake 0.016165 ============================================================================================= TESTING: consistencyChecks from config.packages.unittestcpp(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.unittestcpp(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.002632 ============================================================================================= TESTING: consistencyChecks from config.packages.googletest(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.googletest(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.001782 ============================================================================================= TESTING: consistencyChecks from config.packages.opencascade(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opencascade(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.opencascade 0.001705 ============================================================================================= TESTING: consistencyChecks from config.packages.eigen(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.eigen(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.001731 ============================================================================================= TESTING: consistencyChecks from config.packages.szlib(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.szlib(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.001661 ============================================================================================= TESTING: consistencyChecks from config.packages.zlib(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.zlib(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.zlib(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:928) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional zlib Checking for library in Compiler specific search ZLIB: [] ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [compress uncompress] in library [] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } int main() { _check_compress(); _check_uncompress();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } void dummy(void) {_check_compress(); _check_uncompress();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lquadmath -lstdc++ -ldl Checking for optional headers [] in Compiler specific search ZLIB: [] ============================================================================================= TESTING: checkInclude from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['zlib.h'] in Compiler specific search ZLIB: [] ============================================================================================= TESTING: checkInclude from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['zlib.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['zlib.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.zlib(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "zlib.h" petscpkgver(ZLIB_VERSION); Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.zlib -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.packages.zlib/conftest.c For zlib need <= 1.2.11 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.zlib(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.zlib 1.848841 child config.packages.mathlib 0.000041 ============================================================================================= TESTING: consistencyChecks from config.packages.tetgen(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tetgen(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.tetgen 0.002662 ============================================================================================= TESTING: consistencyChecks from config.packages.tchem(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tchem(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.001716 ============================================================================================= TESTING: consistencyChecks from config.packages.saws(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.saws(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.001657 ============================================================================================= TESTING: consistencyChecks from config.packages.libpng(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libpng(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.001659 ============================================================================================= TESTING: consistencyChecks from config.packages.hcephes(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hcephes(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.hcephes 0.001712 ============================================================================================= TESTING: consistencyChecks from config.packages.combblas(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.combblas(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.001646 ============================================================================================= TESTING: consistencyChecks from config.packages.Triangle(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Triangle(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.Triangle 0.001644 ============================================================================================= TESTING: consistencyChecks from config.packages.metis(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.metis(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.metis 0.001628 ============================================================================================= TESTING: consistencyChecks from config.packages.pragmatic(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pragmatic(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic 0.001681 ============================================================================================= TESTING: consistencyChecks from config.packages.parmetis(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.parmetis(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.parmetis 0.001703 ============================================================================================= TESTING: consistencyChecks from config.packages.Chaco(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Chaco(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.Chaco 0.001715 Executing: uname -s stdout: Linux ============================================================================================= TESTING: consistencyChecks from config.packages.hdf5(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hdf5(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.hdf5 0.011559 ============================================================================================= TESTING: consistencyChecks from config.packages.med(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.med(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.med 0.001830 ============================================================================================= TESTING: consistencyChecks from config.packages.cgns(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cgns(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.cgns 0.001584 ============================================================================================= TESTING: consistencyChecks from config.packages.ascem-io(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ascem-io(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io 0.001659 ============================================================================================= TESTING: consistencyChecks from config.packages.pflotran(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pflotran(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.pflotran 0.001631 ============================================================================================= TESTING: consistencyChecks from config.packages.alquimia(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.alquimia(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.alquimia 0.001679 ============================================================================================= TESTING: consistencyChecks from config.packages.SAMRAI(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SAMRAI(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI 0.001696 child config.packages.flibs 0.000024 ============================================================================================= TESTING: consistencyChecks from config.packages.pnetcdf(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pnetcdf(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.pnetcdf 0.001685 ============================================================================================= TESTING: consistencyChecks from config.packages.netcdf(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.netcdf(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.netcdf 0.001638 ============================================================================================= TESTING: consistencyChecks from config.packages.exodusii(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.exodusii(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.exodusii 0.001660 ============================================================================================= TESTING: consistencyChecks from config.packages.fblaslapack(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.fblaslapack(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.fblaslapack 0.001595 ============================================================================================= TESTING: consistencyChecks from config.packages.pthread(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.pthread(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.pthread(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/pthread.py:20) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } void dummy(void) {_check_pthread_create();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -lquadmath -lstdc++ -ldl Checking for optional headers [] in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: checkInclude from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: checkInclude from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.zlib -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['pthread.h'] in [] ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.pthread/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.packages.pthread/conftest.c", line 6: warning: variable "a" was declared but never referenced pthread_barrier_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.pthread/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.packages.pthread/conftest.c", line 6: warning: variable "a" was declared but never referenced cpu_set_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.zlib -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.headers /tmp/petsc-AzrmlS/config.packages.pthread/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSCTL_H" to "1" ============================================================================================= TESTING: checkVersion from config.packages.pthread(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.pthread(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.pthread 2.341521 ============================================================================================= TESTING: consistencyChecks from config.packages.egads(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.egads(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.002646 ============================================================================================= TESTING: consistencyChecks from config.packages.PTScotch(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PTScotch(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.PTScotch 0.001755 ============================================================================================= TESTING: consistencyChecks from config.packages.mmg(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mmg(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.mmg 0.001667 ============================================================================================= TESTING: consistencyChecks from config.packages.parmmg(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.parmmg(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.parmmg 0.001690 ============================================================================================= TESTING: consistencyChecks from config.packages.Zoltan(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Zoltan(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.Zoltan 0.001655 ============================================================================================= TESTING: consistencyChecks from config.packages.ADIOS(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADIOS(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS 0.001703 ============================================================================================= TESTING: consistencyChecks from config.packages.openmp(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openmp(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.openmp 0.001551 ============================================================================================= TESTING: consistencyChecks from config.packages.viennacl(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.viennacl(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.viennacl 0.001683 ============================================================================================= TESTING: consistencyChecks from config.packages.ColPack(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ColPack(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.ColPack 0.001664 ============================================================================================= TESTING: consistencyChecks from config.packages.ADOLC(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADOLC(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.003768 ============================================================================================= TESTING: consistencyChecks from config.packages.openblas(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openblas(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.openblas 0.001858 ============================================================================================= TESTING: consistencyChecks from config.packages.blis(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.blis(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.blis 0.001663 ============================================================================================= TESTING: consistencyChecks from config.packages.f2cblaslapack(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.f2cblaslapack 0.001462 ============================================================================================= TESTING: consistencyChecks from config.packages.BlasLapack(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.BlasLapack(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.BlasLapack(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/BlasLapack.py:487) ================================================================================ Checking for BLAS and LAPACK in Default compiler libraries ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library [''] ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64/libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so', '-Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-L/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7', '-L/usr/lib64/gcc/x86_64-suse-linux/7', '-lstdc++', '-ldl', '-ldarshan', '-lz', '-lsci_nvidia_mpi_mp', '-lsci_nvidia_mp', '-lmpifort_nvidia', '-lmpi_nvidia', '-ldsmml', '-lxpmem', '-lacchost', '-laccdevaux', '-laccdevice', '-lhxrt_dev_110', '-lnvhpcman', '-lcudadevice', '-lnvf', '-lnvomp', '-lnvhpcatm', '-latomic', '-lpthread', '-lnvcpumath-avx2', '-lnsnvc', '-lnvc', '-lrt', '-lm', '-lgcc_s', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64'] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } void dummy(void) {_check_ddot_();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl Checking for functions [dgetrs_] in library [''] ['', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64/libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so', '-Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-L/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7', '-L/usr/lib64/gcc/x86_64-suse-linux/7', '-lstdc++', '-ldl', '-ldarshan', '-lz', '-lsci_nvidia_mpi_mp', '-lsci_nvidia_mp', '-lmpifort_nvidia', '-lmpi_nvidia', '-ldsmml', '-lxpmem', '-lacchost', '-laccdevaux', '-laccdevice', '-lhxrt_dev_110', '-lnvhpcman', '-lcudadevice', '-lnvf', '-lnvomp', '-lnvhpcatm', '-latomic', '-lpthread', '-lnvcpumath-avx2', '-lnsnvc', '-lnvc', '-lrt', '-lm', '-lgcc_s', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64'] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } void dummy(void) {_check_dgetrs_();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl Checking for functions [dgeev_] in library [''] ['', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64/libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so', '-Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-L/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7', '-L/usr/lib64/gcc/x86_64-suse-linux/7', '-lstdc++', '-ldl', '-ldarshan', '-lz', '-lsci_nvidia_mpi_mp', '-lsci_nvidia_mp', '-lmpifort_nvidia', '-lmpi_nvidia', '-ldsmml', '-lxpmem', '-lacchost', '-laccdevaux', '-laccdevice', '-lhxrt_dev_110', '-lnvhpcman', '-lcudadevice', '-lnvf', '-lnvomp', '-lnvhpcatm', '-latomic', '-lpthread', '-lnvcpumath-avx2', '-lnsnvc', '-lnvc', '-lrt', '-lm', '-lgcc_s', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64'] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } void dummy(void) {_check_dgeev_();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl Found Fortran mangling on BLAS/LAPACK which is underscore Defined "BLASLAPACK_UNDERSCORE" to "1" ============================================================================================= TESTING: checkMKL from config.packages.BlasLapack(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/BlasLapack.py:559) Check for Intel MKL library Checking for functions [mkl_set_num_threads] in library ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64/libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so', '-Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-L/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7', '-L/usr/lib64/gcc/x86_64-suse-linux/7', '-lstdc++', '-ldl', '-ldarshan', '-lz', '-lsci_nvidia_mpi_mp', '-lsci_nvidia_mp', '-lmpifort_nvidia', '-lmpi_nvidia', '-ldsmml', '-lxpmem', '-lacchost', '-laccdevaux', '-laccdevice', '-lhxrt_dev_110', '-lnvhpcman', '-lcudadevice', '-lnvf', '-lnvomp', '-lnvhpcatm', '-latomic', '-lpthread', '-lnvcpumath-avx2', '-lnsnvc', '-lnvc', '-lrt', '-lm', '-lgcc_s', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64'] [] Checking directory of requested libraries:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 for first library:libcufft. Files in directory:['libcublas.so', 'libcublas.so.11', 'libcublas.so.11.5.4.8', 'libcublasLt.so', 'libcublasLt.so.11', 'libcublasLt.so.11.5.4.8', 'libcublasLt_static.a', 'libcublas_static.a', 'libcufft.so', 'libcufft.so.10', 'libcufft.so.10.5.2.100', 'libcufft_static.a', 'libcufft_static_nocallback.a', 'libcufftw.so', 'libcufftw.so.10', 'libcufftw.so.10.5.2.100', 'libcufftw_static.a', 'libcurand.so', 'libcurand.so.10', 'libcurand.so.10.2.5.100', 'libcurand_static.a', 'libcusolver.so', 'libcusolver.so.11', 'libcusolver.so.11.2.0.100', 'libcusolverMg.so', 'libcusolverMg.so.11', 'libcusolverMg.so.11.2.0.100', 'libcusolver_static.a', 'libcusparse.so', 'libcusparse.so.11', 'libcusparse.so.11.6.0.100', 'libcusparse_static.a', 'libcutensor.so', 'libcutensor.so.1', 'libcutensor.so.1.3.1', 'libcutensor_static.a', 'liblapack_static.a', 'libmetis_static.a', 'libnvblas.so', 'libnvblas.so.11', 'libnvblas.so.11.5.4.8', 'stubs'] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_mkl_set_num_threads': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_mkl_set_num_threads': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_mkl_set_num_threads': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads' pgacclnk: child process exit status 1: /usr/bin/ld: ============================================================================================= TESTING: checkESSL from config.packages.BlasLapack(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/BlasLapack.py:603) Check for the IBM ESSL library Checking for functions [iessl] in library ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64/libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so', '-Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-L/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7', '-L/usr/lib64/gcc/x86_64-suse-linux/7', '-lstdc++', '-ldl', '-ldarshan', '-lz', '-lsci_nvidia_mpi_mp', '-lsci_nvidia_mp', '-lmpifort_nvidia', '-lmpi_nvidia', '-ldsmml', '-lxpmem', '-lacchost', '-laccdevaux', '-laccdevice', '-lhxrt_dev_110', '-lnvhpcman', '-lcudadevice', '-lnvf', '-lnvomp', '-lnvhpcatm', '-latomic', '-lpthread', '-lnvcpumath-avx2', '-lnsnvc', '-lnvc', '-lrt', '-lm', '-lgcc_s', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64'] [] Checking directory of requested libraries:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 for first library:libcufft. Files in directory:['libcublas.so', 'libcublas.so.11', 'libcublas.so.11.5.4.8', 'libcublasLt.so', 'libcublasLt.so.11', 'libcublasLt.so.11.5.4.8', 'libcublasLt_static.a', 'libcublas_static.a', 'libcufft.so', 'libcufft.so.10', 'libcufft.so.10.5.2.100', 'libcufft_static.a', 'libcufft_static_nocallback.a', 'libcufftw.so', 'libcufftw.so.10', 'libcufftw.so.10.5.2.100', 'libcufftw_static.a', 'libcurand.so', 'libcurand.so.10', 'libcurand.so.10.2.5.100', 'libcurand_static.a', 'libcusolver.so', 'libcusolver.so.11', 'libcusolver.so.11.2.0.100', 'libcusolverMg.so', 'libcusolverMg.so.11', 'libcusolverMg.so.11.2.0.100', 'libcusolver_static.a', 'libcusparse.so', 'libcusparse.so.11', 'libcusparse.so.11.6.0.100', 'libcusparse_static.a', 'libcutensor.so', 'libcutensor.so.1', 'libcutensor.so.1.3.1', 'libcutensor_static.a', 'liblapack_static.a', 'libmetis_static.a', 'libnvblas.so', 'libnvblas.so.11', 'libnvblas.so.11.5.4.8', 'stubs'] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_iessl': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `iessl' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_iessl': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `iessl' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_iessl': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `iessl' pgacclnk: child process exit status 1: /usr/bin/ld: ============================================================================================= TESTING: checkPESSL from config.packages.BlasLapack(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/BlasLapack.py:623) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions [ipessl] in library ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64/libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so', '-Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-L/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7', '-L/usr/lib64/gcc/x86_64-suse-linux/7', '-lstdc++', '-ldl', '-ldarshan', '-lz', '-lsci_nvidia_mpi_mp', '-lsci_nvidia_mp', '-lmpifort_nvidia', '-lmpi_nvidia', '-ldsmml', '-lxpmem', '-lacchost', '-laccdevaux', '-laccdevice', '-lhxrt_dev_110', '-lnvhpcman', '-lcudadevice', '-lnvf', '-lnvomp', '-lnvhpcatm', '-latomic', '-lpthread', '-lnvcpumath-avx2', '-lnsnvc', '-lnvc', '-lrt', '-lm', '-lgcc_s', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64'] [] Checking directory of requested libraries:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 for first library:libcufft. Files in directory:['libcublas.so', 'libcublas.so.11', 'libcublas.so.11.5.4.8', 'libcublasLt.so', 'libcublasLt.so.11', 'libcublasLt.so.11.5.4.8', 'libcublasLt_static.a', 'libcublas_static.a', 'libcufft.so', 'libcufft.so.10', 'libcufft.so.10.5.2.100', 'libcufft_static.a', 'libcufft_static_nocallback.a', 'libcufftw.so', 'libcufftw.so.10', 'libcufftw.so.10.5.2.100', 'libcufftw_static.a', 'libcurand.so', 'libcurand.so.10', 'libcurand.so.10.2.5.100', 'libcurand_static.a', 'libcusolver.so', 'libcusolver.so.11', 'libcusolver.so.11.2.0.100', 'libcusolverMg.so', 'libcusolverMg.so.11', 'libcusolverMg.so.11.2.0.100', 'libcusolver_static.a', 'libcusparse.so', 'libcusparse.so.11', 'libcusparse.so.11.6.0.100', 'libcusparse_static.a', 'libcutensor.so', 'libcutensor.so.1', 'libcutensor.so.1.3.1', 'libcutensor_static.a', 'liblapack_static.a', 'libmetis_static.a', 'libnvblas.so', 'libnvblas.so.11', 'libnvblas.so.11.5.4.8', 'stubs'] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_ipessl': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `ipessl' pgacclnk: child process exit status 1: /usr/bin/ld Linker output before filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_ipessl': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `ipessl' pgacclnk: child process exit status 1: /usr/bin/ld : Linker output after filtering: /usr/bin/ld: /tmp/petsc-AzrmlS/config.libraries/conftest.o: in function `_check_ipessl': /tmp/petsc-AzrmlS/config.libraries/conftest.c:5: undefined reference to `ipessl' pgacclnk: child process exit status 1: /usr/bin/ld: ============================================================================================= TESTING: checkMissing from config.packages.BlasLapack(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/BlasLapack.py:648) Check for missing LAPACK routines Checking for functions [dgelss_ dgerfs_ dgges_ dhgeqz_ dhseqr_ dorgqr_ dormqr_ dstebz_ dstegr_ dstein_ dsteqr_ dsytri_ dtgsen_ dtrsen_ dtrtrs_ dgeqp3_] in library [''] ['', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64/libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so', '-Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-L/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7', '-L/usr/lib64/gcc/x86_64-suse-linux/7', '-lstdc++', '-ldl', '-ldarshan', '-lz', '-lsci_nvidia_mpi_mp', '-lsci_nvidia_mp', '-lmpifort_nvidia', '-lmpi_nvidia', '-ldsmml', '-lxpmem', '-lacchost', '-laccdevaux', '-laccdevice', '-lhxrt_dev_110', '-lnvhpcman', '-lcudadevice', '-lnvf', '-lnvomp', '-lnvhpcatm', '-latomic', '-lpthread', '-lnvcpumath-avx2', '-lnsnvc', '-lnvc', '-lrt', '-lm', '-lgcc_s', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64'] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgelss_(); static void _check_dgelss_() { dgelss_(); } char dgerfs_(); static void _check_dgerfs_() { dgerfs_(); } char dgges_(); static void _check_dgges_() { dgges_(); } char dhgeqz_(); static void _check_dhgeqz_() { dhgeqz_(); } char dhseqr_(); static void _check_dhseqr_() { dhseqr_(); } char dorgqr_(); static void _check_dorgqr_() { dorgqr_(); } char dormqr_(); static void _check_dormqr_() { dormqr_(); } char dstebz_(); static void _check_dstebz_() { dstebz_(); } char dstegr_(); static void _check_dstegr_() { dstegr_(); } char dstein_(); static void _check_dstein_() { dstein_(); } char dsteqr_(); static void _check_dsteqr_() { dsteqr_(); } char dsytri_(); static void _check_dsytri_() { dsytri_(); } char dtgsen_(); static void _check_dtgsen_() { dtgsen_(); } char dtrsen_(); static void _check_dtrsen_() { dtrsen_(); } char dtrtrs_(); static void _check_dtrtrs_() { dtrtrs_(); } char dgeqp3_(); static void _check_dgeqp3_() { dgeqp3_(); } int main() { _check_dgelss_(); _check_dgerfs_(); _check_dgges_(); _check_dhgeqz_(); _check_dhseqr_(); _check_dorgqr_(); _check_dormqr_(); _check_dstebz_(); _check_dstegr_(); _check_dstein_(); _check_dsteqr_(); _check_dsytri_(); _check_dtgsen_(); _check_dtrsen_(); _check_dtrtrs_(); _check_dgeqp3_();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgelss_(); static void _check_dgelss_() { dgelss_(); } char dgerfs_(); static void _check_dgerfs_() { dgerfs_(); } char dgges_(); static void _check_dgges_() { dgges_(); } char dhgeqz_(); static void _check_dhgeqz_() { dhgeqz_(); } char dhseqr_(); static void _check_dhseqr_() { dhseqr_(); } char dorgqr_(); static void _check_dorgqr_() { dorgqr_(); } char dormqr_(); static void _check_dormqr_() { dormqr_(); } char dstebz_(); static void _check_dstebz_() { dstebz_(); } char dstegr_(); static void _check_dstegr_() { dstegr_(); } char dstein_(); static void _check_dstein_() { dstein_(); } char dsteqr_(); static void _check_dsteqr_() { dsteqr_(); } char dsytri_(); static void _check_dsytri_() { dsytri_(); } char dtgsen_(); static void _check_dtgsen_() { dtgsen_(); } char dtrsen_(); static void _check_dtrsen_() { dtrsen_(); } char dtrtrs_(); static void _check_dtrtrs_() { dtrtrs_(); } char dgeqp3_(); static void _check_dgeqp3_() { dgeqp3_(); } void dummy(void) {_check_dgelss_(); _check_dgerfs_(); _check_dgges_(); _check_dhgeqz_(); _check_dhseqr_(); _check_dorgqr_(); _check_dormqr_(); _check_dstebz_(); _check_dstegr_(); _check_dstein_(); _check_dsteqr_(); _check_dsytri_(); _check_dtgsen_(); _check_dtrsen_(); _check_dtrtrs_(); _check_dgeqp3_();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl ============================================================================================= TESTING: checklsame from config.packages.BlasLapack(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/BlasLapack.py:664) Do the BLAS/LAPACK libraries have a valid lsame() function with correct binding. Checking for functions [lsame_] in library ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64/libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so', '-Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-L/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7', '-L/usr/lib64/gcc/x86_64-suse-linux/7', '-lstdc++', '-ldl', '-ldarshan', '-lz', '-lsci_nvidia_mpi_mp', '-lsci_nvidia_mp', '-lmpifort_nvidia', '-lmpi_nvidia', '-ldsmml', '-lxpmem', '-lacchost', '-laccdevaux', '-laccdevice', '-lhxrt_dev_110', '-lnvhpcman', '-lcudadevice', '-lnvf', '-lnvomp', '-lnvhpcatm', '-latomic', '-lpthread', '-lnvcpumath-avx2', '-lnsnvc', '-lnvc', '-lrt', '-lm', '-lgcc_s', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64'] [] Checking directory of requested libraries:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 for first library:libcufft. Files in directory:['libcublas.so', 'libcublas.so.11', 'libcublas.so.11.5.4.8', 'libcublasLt.so', 'libcublasLt.so.11', 'libcublasLt.so.11.5.4.8', 'libcublasLt_static.a', 'libcublas_static.a', 'libcufft.so', 'libcufft.so.10', 'libcufft.so.10.5.2.100', 'libcufft_static.a', 'libcufft_static_nocallback.a', 'libcufftw.so', 'libcufftw.so.10', 'libcufftw.so.10.5.2.100', 'libcufftw_static.a', 'libcurand.so', 'libcurand.so.10', 'libcurand.so.10.2.5.100', 'libcurand_static.a', 'libcusolver.so', 'libcusolver.so.11', 'libcusolver.so.11.2.0.100', 'libcusolverMg.so', 'libcusolverMg.so.11', 'libcusolverMg.so.11.2.0.100', 'libcusolver_static.a', 'libcusparse.so', 'libcusparse.so.11', 'libcusparse.so.11.6.0.100', 'libcusparse_static.a', 'libcutensor.so', 'libcutensor.so.1', 'libcutensor.so.1.3.1', 'libcutensor_static.a', 'liblapack_static.a', 'libmetis_static.a', 'libnvblas.so', 'libnvblas.so.11', 'libnvblas.so.11.5.4.8', 'stubs'] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } void dummy(void) {_check_lsame_();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl Defined "HAVE_LIBCUFFT" to "1" Defined "HAVE_LIBCUBLAS" to "1" Defined "HAVE_LIBCUSPARSE" to "1" Defined "HAVE_LIBCUSOLVER" to "1" Defined "HAVE_LIBCURAND" to "1" Defined "HAVE_LIBCUDART" to "1" Defined "HAVE_LIBCUDA" to "1" Defined "HAVE_LIBSTDC__" to "1" Defined "HAVE_LIBDL" to "1" Defined "HAVE_LIBDARSHAN" to "1" Defined "HAVE_LIBZ" to "1" Defined "HAVE_LIBSCI_NVIDIA_MPI_MP" to "1" Defined "HAVE_LIBSCI_NVIDIA_MP" to "1" Defined "HAVE_LIBMPIFORT_NVIDIA" to "1" Defined "HAVE_LIBMPI_NVIDIA" to "1" Defined "HAVE_LIBDSMML" to "1" Defined "HAVE_LIBXPMEM" to "1" Defined "HAVE_LIBACCHOST" to "1" Defined "HAVE_LIBACCDEVAUX" to "1" Defined "HAVE_LIBACCDEVICE" to "1" Defined "HAVE_LIBHXRT_DEV_110" to "1" Defined "HAVE_LIBNVHPCMAN" to "1" Defined "HAVE_LIBCUDADEVICE" to "1" Defined "HAVE_LIBNVF" to "1" Defined "HAVE_LIBNVOMP" to "1" Defined "HAVE_LIBNVHPCATM" to "1" Defined "HAVE_LIBATOMIC" to "1" Defined "HAVE_LIBPTHREAD" to "1" Defined "HAVE_LIBNVCPUMATH_AVX2" to "1" Defined "HAVE_LIBNSNVC" to "1" Defined "HAVE_LIBNVC" to "1" Defined "HAVE_LIBRT" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBGCC_S" to "1" ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); } ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); } Executing: cc -o /tmp/petsc-AzrmlS/config.setCompilers/libconftest.so -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.setCompilers/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -lcudart -lcuda -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -lquadmath -lstdc++ -ldl ============================================================================================= TESTING: checkRuntimeIssues from config.packages.BlasLapack(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/BlasLapack.py:723) Determines if BLAS/LAPACK routines use 32 or 64 bit integers ======== Checking running linked program ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { FILE *output = fopen("runtimetestoutput","w"); extern double ddot_(const int*,const double*,const int *,const double*,const int*); double x1mkl[4] = {3.0,5.0,7.0,9.0}; int one1mkl = 1,nmkl = 2; double dotresultmkl = 0; dotresultmkl = ddot_(&nmkl,x1mkl,&one1mkl,x1mkl,&one1mkl); fprintf(output, "-known-64-bit-blas-indices=%d",dotresultmkl != 34);; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest to see if it can be run Executing: /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest Checking for 64 bit blas indices: result 0 Checking if sdot() returns a float or a double ======== Checking running linked program ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { FILE *output = fopen("runtimetestoutput","w"); extern float sdot_(const int*,const float*,const int *,const float*,const int*); float x1[1] = {3.0}; int one1 = 1; long long int ione1 = 1; float sdotresult = 0; int blasint64 = 0; if (!blasint64) { sdotresult = sdot_(&one1,x1,&one1,x1,&one1); } else { sdotresult = sdot_((const int*)&ione1,x1,(const int*)&ione1,x1,(const int*)&ione1); } fprintf(output, "--known-sdot-returns-double=%d",sdotresult != 9); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest to see if it can be run Executing: /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest Checking for sdot() return double: result 0 Checking if snrm() returns a float or a double ======== Checking running linked program ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { FILE *output = fopen("runtimetestoutput","w"); extern float snrm2_(const int*,const float*,const int*); float x2[1] = {3.0}; int one2 = 1; long long int ione2 = 1; float normresult = 0; int blasint64 = 0; if (!blasint64) { normresult = snrm2_(&one2,x2,&one2); } else { normresult = snrm2_((const int*)&ione2,x2,(const int*)&ione2); } fprintf(output, "--known-snrm2-returns-double=%d",normresult != 3); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest to see if it can be run Executing: /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-AzrmlS/config.packages.BlasLapack/conftest Checking for snrm2() return double: result 0 ============================================================================================= TESTING: checkVersion from config.packages.BlasLapack(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.BlasLapack(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.BlasLapack 15.288899 ============================================================================================= TESTING: consistencyChecks from config.packages.sundials2(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sundials2(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.sundials2 0.002051 ============================================================================================= TESTING: consistencyChecks from config.packages.spai(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/spai.py:53) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.spai(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.spai 0.002049 ============================================================================================= TESTING: consistencyChecks from config.packages.raja(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.raja(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.raja 0.001670 ============================================================================================= TESTING: consistencyChecks from config.packages.pARMS(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pARMS(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.pARMS 0.001638 ============================================================================================= TESTING: consistencyChecks from config.packages.p4est(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.p4est(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.p4est(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:928) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional p4est Looking for P4EST at git.p4est, hg.p4est or a directory starting with ['p4est'] Found a copy of P4EST in git.p4est Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', '1727693b446ee0c987be701320db0cd5de617cfc^{commit}'] Executing: ['git', 'rev-parse', '1727693b446ee0c987be701320db0cd5de617cfc'] stdout: 1727693b446ee0c987be701320db0cd5de617cfc Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing p4est.petscconf Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '1727693b446ee0c987be701320db0cd5de617cfc'] Looking for P4EST at git.p4est, hg.p4est or a directory starting with ['p4est'] Found a copy of P4EST in git.p4est Executing: ['git', 'submodule', 'update', '--init'] Executing: ftn -v Executing: ftn -V stdout: nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. Executing: ftn --version stdout: nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. Executing: ftn -V stdout: nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. Executing: ftn --version stdout: nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. Executing: ftn -V stdout: nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. Executing: ftn --version stdout: nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. Makefile /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/lib/petsc/conf/pkg.conf.p4est has correct checksum Commit file /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/lib/petsc/conf/pkg.gitcommit.p4est has correct checksum Do not need to rebuild P4EST Checking for library in Download P4EST: ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib/libp4est.a', 'libsc.a'] Contents of /global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9: ['include', 'bin', 'etc', 'lib', 'share'] Contents /global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib: ['libHYPRE-2.23.0.so', 'libsc-2.0.so', 'libp4est.a', 'libpetsc.so', 'libpetsc.so.3.016', 'libp4est-2.0.7-1727.so', 'libHYPRE.so', 'libsc.la', 'libsc.so', 'libpetsc.so.3.016.1', 'libsc.a', 'libp4est.so', 'petsc', 'libp4est.la', 'pkgconfig'] ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [p4est_init] in library ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib/libp4est.a', 'libsc.a'] ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64/libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so', '-Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-L/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7', '-L/usr/lib64/gcc/x86_64-suse-linux/7', '-lstdc++', '-ldl', '-ldarshan', '-lz', '-lsci_nvidia_mpi_mp', '-lsci_nvidia_mp', '-lmpifort_nvidia', '-lmpi_nvidia', '-ldsmml', '-lxpmem', '-lacchost', '-laccdevaux', '-laccdevice', '-lhxrt_dev_110', '-lnvhpcman', '-lcudadevice', '-lnvf', '-lnvomp', '-lnvhpcatm', '-latomic', '-lpthread', '-lnvcpumath-avx2', '-lnsnvc', '-lnvc', '-lrt', '-lm', '-lgcc_s', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64'] Checking directory of requested libraries:/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib for first library:libp4est. Files in directory:['libHYPRE-2.23.0.so', 'libsc-2.0.so', 'libp4est.a', 'libpetsc.so', 'libpetsc.so.3.016', 'libp4est-2.0.7-1727.so', 'libHYPRE.so', 'libsc.la', 'libsc.so', 'libpetsc.so.3.016.1', 'libsc.a', 'libp4est.so', 'petsc', 'libp4est.la', 'pkgconfig'] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char p4est_init(); static void _check_p4est_init() { p4est_init(); } int main() { _check_p4est_init();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -Wl,-rpath,/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -L/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -lp4est -lsc -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char p4est_init(); static void _check_p4est_init() { p4est_init(); } void dummy(void) {_check_p4est_init();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -Wl,-rpath,/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -L/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -lp4est -lsc -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl Defined "HAVE_LIBP4EST" to "1" Defined "HAVE_LIBSC" to "1" Checking for optional headers [] in Download P4EST: ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include'] ============================================================================================= TESTING: checkInclude from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include'] Found header files [] in ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include'] Checking for headers ['p4est_bits.h'] in Download P4EST: ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include'] ============================================================================================= TESTING: checkInclude from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['p4est_bits.h'] in ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include'] Checking include with compiler flags var CPPFLAGS ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.zlib -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.headers -I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['p4est_bits.h'] in ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include'] ============================================================================================= TESTING: checkVersion from config.packages.p4est(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.p4est(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.p4est 2.645876 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_sparse_optimize(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mkl_sparse_optimize(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.mkl_sparse_optimize(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/mkl_sparse_optimize.py:48) ============================================================================================= TESTING: checkVersion from config.packages.mkl_sparse_optimize(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.mkl_sparse_optimize 0.002789 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_sparse(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mkl_sparse(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.mkl_sparse(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/mkl_sparse.py:21) ============================================================================================= TESTING: checkVersion from config.packages.mkl_sparse(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mkl_sparse(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.mkl_sparse 0.001873 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_cpardiso(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/mkl_cpardiso.py:20) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.mkl_cpardiso 0.001447 ============================================================================================= TESTING: consistencyChecks from config.packages.kokkos(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.kokkos(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.kokkos 0.001240 ============================================================================================= TESTING: consistencyChecks from config.packages.kokkos-kernels(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.kokkos-kernels(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.kokkos-kernels 0.001202 ============================================================================================= TESTING: consistencyChecks from config.packages.htool(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.htool(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.htool 0.001396 ============================================================================================= TESTING: consistencyChecks from config.packages.hpddm(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hpddm(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/hpddm.py:110) Defined make rule "hpddm-build" with dependencies "" and code [] Defined make rule "hpddm-install" with dependencies "" and code [] child config.packages.hpddm 0.001750 ============================================================================================= TESTING: consistencyChecks from config.packages.magma(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.magma(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.magma 0.001260 ============================================================================================= TESTING: consistencyChecks from config.packages.kblas(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.kblas(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.kblas 0.001209 ============================================================================================= TESTING: consistencyChecks from config.packages.h2opus(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.h2opus(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.h2opus 0.001159 ============================================================================================= TESTING: consistencyChecks from config.packages.fftw(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.fftw(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.fftw 0.001233 ============================================================================================= TESTING: consistencyChecks from config.packages.elemental(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.elemental(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.elemental 0.001200 ============================================================================================= TESTING: consistencyChecks from config.packages.bamg(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.bamg(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/bamg.py:86) Defined make rule "bamg-build" with dependencies "" and code [] Defined make rule "bamg-install" with dependencies "" and code [] child config.packages.bamg 0.001715 ============================================================================================= TESTING: consistencyChecks from config.packages.ml(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/ml.py:62) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ml(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.ml 0.001531 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_pardiso(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/mkl_pardiso.py:21) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.mkl_pardiso 0.001332 ============================================================================================= TESTING: consistencyChecks from config.packages.SuperLU_DIST(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SuperLU_DIST(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.SuperLU_DIST 0.001198 ============================================================================================= TESTING: consistencyChecks from config.packages.SuperLU(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SuperLU(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.SuperLU 0.001219 Executing: uname -s stdout: Linux ============================================================================================= TESTING: consistencyChecks from config.packages.SuiteSparse(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/SuiteSparse.py:176) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SuiteSparse(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.SuiteSparse 0.011277 ============================================================================================= TESTING: consistencyChecks from config.packages.PaStiX(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PaStiX(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.PaStiX 0.001662 ============================================================================================= TESTING: consistencyChecks from config.packages.scalapack(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.scalapack(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.scalapack 0.001675 ============================================================================================= TESTING: consistencyChecks from config.packages.strumpack(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/strumpack.py:66) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.strumpack(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.strumpack 0.001995 ============================================================================================= TESTING: consistencyChecks from config.packages.MUMPS(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/MUMPS.py:59) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MUMPS(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.MUMPS 0.002129 ============================================================================================= TESTING: consistencyChecks from config.packages.MOAB(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MOAB(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.MOAB 0.001664 ============================================================================================= TESTING: consistencyChecks from config.packages.Chombo(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/Chombo.py:130) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Chombo(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.Chombo 0.001976 ============================================================================================= TESTING: consistencyChecks from config.packages.hypre(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/hypre.py:171) Checking for functions [dgels_] in library ['/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64/libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so', '-Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-L/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7', '-L/usr/lib64/gcc/x86_64-suse-linux/7', '-lstdc++', '-ldl', '-ldarshan', '-lz', '-lsci_nvidia_mpi_mp', '-lsci_nvidia_mp', '-lmpifort_nvidia', '-lmpi_nvidia', '-ldsmml', '-lxpmem', '-lacchost', '-laccdevaux', '-laccdevice', '-lhxrt_dev_110', '-lnvhpcman', '-lcudadevice', '-lnvf', '-lnvomp', '-lnvhpcatm', '-latomic', '-lpthread', '-lnvcpumath-avx2', '-lnsnvc', '-lnvc', '-lrt', '-lm', '-lgcc_s', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64'] [] Checking directory of requested libraries:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 for first library:libcufft. Files in directory:['libcublas.so', 'libcublas.so.11', 'libcublas.so.11.5.4.8', 'libcublasLt.so', 'libcublasLt.so.11', 'libcublasLt.so.11.5.4.8', 'libcublasLt_static.a', 'libcublas_static.a', 'libcufft.so', 'libcufft.so.10', 'libcufft.so.10.5.2.100', 'libcufft_static.a', 'libcufft_static_nocallback.a', 'libcufftw.so', 'libcufftw.so.10', 'libcufftw.so.10.5.2.100', 'libcufftw_static.a', 'libcurand.so', 'libcurand.so.10', 'libcurand.so.10.2.5.100', 'libcurand_static.a', 'libcusolver.so', 'libcusolver.so.11', 'libcusolver.so.11.2.0.100', 'libcusolverMg.so', 'libcusolverMg.so.11', 'libcusolverMg.so.11.2.0.100', 'libcusolver_static.a', 'libcusparse.so', 'libcusparse.so.11', 'libcusparse.so.11.6.0.100', 'libcusparse_static.a', 'libcutensor.so', 'libcutensor.so.1', 'libcutensor.so.1.3.1', 'libcutensor_static.a', 'liblapack_static.a', 'libmetis_static.a', 'libnvblas.so', 'libnvblas.so.11', 'libnvblas.so.11.5.4.8', 'stubs'] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgels_(); static void _check_dgels_() { dgels_(); } int main() { _check_dgels_();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgels_(); static void _check_dgels_() { dgels_(); } void dummy(void) {_check_dgels_();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lquadmath -lstdc++ -ldl Defined "HAVE_LIBCUFFT" to "1" Defined "HAVE_LIBCUBLAS" to "1" Defined "HAVE_LIBCUSPARSE" to "1" Defined "HAVE_LIBCUSOLVER" to "1" Defined "HAVE_LIBCURAND" to "1" Defined "HAVE_LIBCUDART" to "1" Defined "HAVE_LIBCUDA" to "1" Defined "HAVE_LIBSTDC__" to "1" Defined "HAVE_LIBDL" to "1" Defined "HAVE_LIBDARSHAN" to "1" Defined "HAVE_LIBZ" to "1" Defined "HAVE_LIBSCI_NVIDIA_MPI_MP" to "1" Defined "HAVE_LIBSCI_NVIDIA_MP" to "1" Defined "HAVE_LIBMPIFORT_NVIDIA" to "1" Defined "HAVE_LIBMPI_NVIDIA" to "1" Defined "HAVE_LIBDSMML" to "1" Defined "HAVE_LIBXPMEM" to "1" Defined "HAVE_LIBACCHOST" to "1" Defined "HAVE_LIBACCDEVAUX" to "1" Defined "HAVE_LIBACCDEVICE" to "1" Defined "HAVE_LIBHXRT_DEV_110" to "1" Defined "HAVE_LIBNVHPCMAN" to "1" Defined "HAVE_LIBCUDADEVICE" to "1" Defined "HAVE_LIBNVF" to "1" Defined "HAVE_LIBNVOMP" to "1" Defined "HAVE_LIBNVHPCATM" to "1" Defined "HAVE_LIBATOMIC" to "1" Defined "HAVE_LIBPTHREAD" to "1" Defined "HAVE_LIBNVCPUMATH_AVX2" to "1" Defined "HAVE_LIBNSNVC" to "1" Defined "HAVE_LIBNVC" to "1" Defined "HAVE_LIBRT" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBGCC_S" to "1" Found dgels() in Lapack library as needed by hypre ============================================================================================= TESTING: checkDependencies from config.packages.hypre(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.hypre(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/hypre.py:179) ================================================================================== Checking for a functional hypre Looking for HYPRE at git.hypre, hg.hypre or a directory starting with ['hypre'] Found a copy of HYPRE in git.hypre Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v2.23.0^{commit}'] Executing: ['git', 'rev-parse', 'v2.23.0'] stdout: 91935f22da3cdf77f44bbc166eaaf47f603c8f93 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing pkg.gitcommit Removing src/HYPRE_config.h Removing src/IJ_mv/F90_HYPRE_IJMatrix.o Removing src/IJ_mv/F90_HYPRE_IJVector.o Removing src/IJ_mv/F90_IJMatrix.o Removing src/IJ_mv/HYPRE_IJMatrix.o Removing src/IJ_mv/HYPRE_IJVector.o Removing src/IJ_mv/IJMatrix.o Removing src/IJ_mv/IJMatrix_parcsr.o Removing src/IJ_mv/IJMatrix_parcsr_device.obj Removing src/IJ_mv/IJVector.o Removing src/IJ_mv/IJVector_parcsr.o Removing src/IJ_mv/IJVector_parcsr_device.obj Removing src/IJ_mv/IJ_assumed_part.o Removing src/IJ_mv/aux_par_vector.o Removing src/IJ_mv/aux_parcsr_matrix.o Removing src/IJ_mv/libHYPRE_IJ_mv-2.23.0.so Removing src/IJ_mv/libHYPRE_IJ_mv.so Removing src/blas/dasum.o Removing src/blas/daxpy.o Removing src/blas/dcopy.o Removing src/blas/ddot.o Removing src/blas/dgemm.o Removing src/blas/dgemv.o Removing src/blas/dger.o Removing src/blas/dnrm2.o Removing src/blas/drot.o Removing src/blas/dscal.o Removing src/blas/dswap.o Removing src/blas/dsymm.o Removing src/blas/dsymv.o Removing src/blas/dsyr2.o Removing src/blas/dsyr2k.o Removing src/blas/dsyrk.o Removing src/blas/dtrmm.o Removing src/blas/dtrmv.o Removing src/blas/dtrsm.o Removing src/blas/dtrsv.o Removing src/blas/f2c.o Removing src/blas/idamax.o Removing src/blas/lsame.o Removing src/blas/xerbla.o Removing src/config.log Removing src/config.status Removing src/config/Makefile.config Removing src/distributed_ls/Euclid/Euclid_apply.o Removing src/distributed_ls/Euclid/Euclid_dh.o Removing src/distributed_ls/Euclid/ExternalRows_dh.o Removing src/distributed_ls/Euclid/Factor_dh.o Removing src/distributed_ls/Euclid/Hash_dh.o Removing src/distributed_ls/Euclid/Hash_i_dh.o Removing src/distributed_ls/Euclid/MatGenFD.o Removing src/distributed_ls/Euclid/Mat_dh.o Removing src/distributed_ls/Euclid/Mem_dh.o Removing src/distributed_ls/Euclid/Numbering_dh.o Removing src/distributed_ls/Euclid/Parser_dh.o Removing src/distributed_ls/Euclid/SortedList_dh.o Removing src/distributed_ls/Euclid/SortedSet_dh.o Removing src/distributed_ls/Euclid/SubdomainGraph_dh.o Removing src/distributed_ls/Euclid/TimeLog_dh.o Removing src/distributed_ls/Euclid/Timer_dh.o Removing src/distributed_ls/Euclid/Vec_dh.o Removing src/distributed_ls/Euclid/blas_dh.o Removing src/distributed_ls/Euclid/getRow_dh.o Removing src/distributed_ls/Euclid/globalObjects.o Removing src/distributed_ls/Euclid/ilu_mpi_bj.o Removing src/distributed_ls/Euclid/ilu_mpi_pilu.o Removing src/distributed_ls/Euclid/ilu_seq.o Removing src/distributed_ls/Euclid/io_dh.o Removing src/distributed_ls/Euclid/krylov_dh.o Removing src/distributed_ls/Euclid/libHYPRE_Euclid-2.23.0.so Removing src/distributed_ls/Euclid/libHYPRE_Euclid.so Removing src/distributed_ls/Euclid/mat_dh_private.o Removing src/distributed_ls/Euclid/shellSort_dh.o Removing src/distributed_ls/Euclid/sig_dh.o Removing src/distributed_ls/ParaSails/ConjGrad.o Removing src/distributed_ls/ParaSails/DiagScale.o Removing src/distributed_ls/ParaSails/FGmres.o Removing src/distributed_ls/ParaSails/Hash.o Removing src/distributed_ls/ParaSails/LoadBal.o Removing src/distributed_ls/ParaSails/Matrix.o Removing src/distributed_ls/ParaSails/Mem.o Removing src/distributed_ls/ParaSails/Numbering.o Removing src/distributed_ls/ParaSails/OrderStat.o Removing src/distributed_ls/ParaSails/ParaSails.o Removing src/distributed_ls/ParaSails/PrunedRows.o Removing src/distributed_ls/ParaSails/RowPatt.o Removing src/distributed_ls/ParaSails/StoredRows.o Removing src/distributed_ls/ParaSails/hypre_ParaSails.o Removing src/distributed_ls/ParaSails/libHYPRE_ParaSails-2.23.0.so Removing src/distributed_ls/ParaSails/libHYPRE_ParaSails.so Removing src/distributed_ls/pilut/HYPRE_DistributedMatrixPilutSolver.o Removing src/distributed_ls/pilut/comm.o Removing src/distributed_ls/pilut/debug.o Removing src/distributed_ls/pilut/distributed_qsort.o Removing src/distributed_ls/pilut/distributed_qsort_si.o Removing src/distributed_ls/pilut/ilut.o Removing src/distributed_ls/pilut/libHYPRE_DistributedMatrixPilutSolver-2.23.0.so Removing src/distributed_ls/pilut/libHYPRE_DistributedMatrixPilutSolver.so Removing src/distributed_ls/pilut/parilut.o Removing src/distributed_ls/pilut/parutil.o Removing src/distributed_ls/pilut/pblas1.o Removing src/distributed_ls/pilut/serilut.o Removing src/distributed_ls/pilut/trifactor.o Removing src/distributed_ls/pilut/util.o Removing src/distributed_matrix/HYPRE_distributed_matrix.o Removing src/distributed_matrix/distributed_matrix.o Removing src/distributed_matrix/distributed_matrix_ISIS.o Removing src/distributed_matrix/distributed_matrix_PETSc.o Removing src/distributed_matrix/distributed_matrix_parcsr.o Removing src/distributed_matrix/libHYPRE_DistributedMatrix-2.23.0.so Removing src/distributed_matrix/libHYPRE_DistributedMatrix.so Removing src/hypre.petscconf Removing src/hypre/ Removing src/krylov/HYPRE_bicgstab.o Removing src/krylov/HYPRE_cgnr.o Removing src/krylov/HYPRE_cogmres.o Removing src/krylov/HYPRE_flexgmres.o Removing src/krylov/HYPRE_gmres.o Removing src/krylov/HYPRE_lgmres.o Removing src/krylov/HYPRE_lobpcg.o Removing src/krylov/HYPRE_pcg.o Removing src/krylov/bicgstab.o Removing src/krylov/cgnr.o Removing src/krylov/cogmres.o Removing src/krylov/flexgmres.o Removing src/krylov/gmres.o Removing src/krylov/lgmres.o Removing src/krylov/libHYPRE_krylov-2.23.0.so Removing src/krylov/libHYPRE_krylov.so Removing src/krylov/lobpcg.o Removing src/krylov/pcg.o Removing src/lapack/dbdsqr.o Removing 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src/lapack/ieeeck.o Removing src/lapack/ilaenv.o Removing src/lapack/lsame.o Removing src/lapack/xerbla.o Removing src/lib/libHYPRE-2.23.0.so Removing src/lib/libHYPRE.so Removing src/matrix_matrix/HYPRE_ConvertPETScMatrixToDistributedMatrix.o Removing src/matrix_matrix/HYPRE_ConvertParCSRMatrixToDistributedMatrix.o Removing src/matrix_matrix/libHYPRE_MatrixMatrix-2.23.0.so Removing src/matrix_matrix/libHYPRE_MatrixMatrix.so Removing src/multivector/libHYPRE_multivector-2.23.0.so Removing src/multivector/libHYPRE_multivector.so Removing src/multivector/multivector.o Removing src/multivector/temp_multivector.o Removing src/parcsr_block_mv/csr_block_matrix.o Removing src/parcsr_block_mv/csr_block_matvec.o Removing src/parcsr_block_mv/libHYPRE_parcsr_block_mv-2.23.0.so Removing src/parcsr_block_mv/libHYPRE_parcsr_block_mv.so Removing src/parcsr_block_mv/par_block_nodal_systems.o Removing src/parcsr_block_mv/par_csr_block_comm.o Removing src/parcsr_block_mv/par_csr_block_interp.o Removing 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src/parcsr_ls/ads.obj Removing src/parcsr_ls/ame.obj Removing src/parcsr_ls/amg_hybrid.o Removing src/parcsr_ls/ams.obj Removing src/parcsr_ls/aux_interp.o Removing src/parcsr_ls/block_tridiag.o Removing src/parcsr_ls/dsuperlu.o Removing src/parcsr_ls/gen_redcs_mat.o Removing src/parcsr_ls/libHYPRE_parcsr_ls-2.23.0.so Removing src/parcsr_ls/libHYPRE_parcsr_ls.so Removing src/parcsr_ls/par_2s_interp.o Removing src/parcsr_ls/par_2s_interp_device.obj Removing src/parcsr_ls/par_add_cycle.o Removing src/parcsr_ls/par_amg.o Removing src/parcsr_ls/par_amg_setup.o Removing src/parcsr_ls/par_amg_solve.o Removing src/parcsr_ls/par_amg_solveT.o Removing src/parcsr_ls/par_amgdd.o Removing src/parcsr_ls/par_amgdd_comp_grid.o Removing src/parcsr_ls/par_amgdd_fac_cycle.o Removing src/parcsr_ls/par_amgdd_fac_cycle_device.obj Removing src/parcsr_ls/par_amgdd_helpers.o Removing src/parcsr_ls/par_amgdd_setup.o Removing src/parcsr_ls/par_amgdd_solve.o Removing src/parcsr_ls/par_cg_relax_wt.o Removing 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Removing src/parcsr_mv/par_csr_aat.o Removing src/parcsr_mv/par_csr_assumed_part.o Removing src/parcsr_mv/par_csr_bool_matop.o Removing src/parcsr_mv/par_csr_bool_matrix.o Removing src/parcsr_mv/par_csr_communication.o Removing src/parcsr_mv/par_csr_fffc_device.obj Removing src/parcsr_mv/par_csr_matop.o Removing src/parcsr_mv/par_csr_matop_device.obj Removing src/parcsr_mv/par_csr_matop_marked.o Removing src/parcsr_mv/par_csr_matrix.o Removing src/parcsr_mv/par_csr_matvec.obj Removing src/parcsr_mv/par_csr_triplemat.o Removing src/parcsr_mv/par_csr_triplemat_device.obj Removing src/parcsr_mv/par_make_system.o Removing src/parcsr_mv/par_vector.o Removing src/parcsr_mv/par_vector_batched.o Removing src/parcsr_mv/par_vector_device.obj Removing src/seq_mv/HYPRE_csr_matrix.o Removing src/seq_mv/HYPRE_mapped_matrix.o Removing src/seq_mv/HYPRE_multiblock_matrix.o Removing src/seq_mv/HYPRE_vector.o Removing src/seq_mv/csr_matop.o Removing src/seq_mv/csr_matop_device.obj Removing src/seq_mv/csr_matrix.o Removing src/seq_mv/csr_matrix_cuda_utils.obj Removing src/seq_mv/csr_matvec.o Removing src/seq_mv/csr_matvec_device.obj Removing src/seq_mv/csr_matvec_oomp.obj Removing src/seq_mv/csr_spadd_device.obj Removing src/seq_mv/csr_spgemm_device.obj Removing src/seq_mv/csr_spgemm_device_attempt.obj Removing src/seq_mv/csr_spgemm_device_confident.obj Removing src/seq_mv/csr_spgemm_device_cusparse.obj Removing src/seq_mv/csr_spgemm_device_rocsparse.obj Removing src/seq_mv/csr_spgemm_device_rowbound.obj Removing src/seq_mv/csr_spgemm_device_rowest.obj Removing src/seq_mv/csr_spgemm_device_util.obj Removing src/seq_mv/csr_spmv_device.obj Removing src/seq_mv/csr_sptrans_device.obj Removing src/seq_mv/genpart.o Removing src/seq_mv/libHYPRE_seq_mv-2.23.0.so Removing src/seq_mv/libHYPRE_seq_mv.so Removing src/seq_mv/mapped_matrix.o Removing src/seq_mv/multiblock_matrix.o Removing src/seq_mv/vector.obj Removing src/seq_mv/vector_batched.o Removing src/sstruct_ls/F90_HYPRE_sstruct_InterFAC.o Removing src/sstruct_ls/F90_HYPRE_sstruct_bicgstab.o Removing src/sstruct_ls/F90_HYPRE_sstruct_flexgmres.o Removing src/sstruct_ls/F90_HYPRE_sstruct_gmres.o Removing src/sstruct_ls/F90_HYPRE_sstruct_int.o Removing src/sstruct_ls/F90_HYPRE_sstruct_lgmres.o Removing src/sstruct_ls/F90_HYPRE_sstruct_maxwell.o Removing src/sstruct_ls/F90_HYPRE_sstruct_pcg.o Removing src/sstruct_ls/F90_HYPRE_sstruct_split.o Removing src/sstruct_ls/F90_HYPRE_sstruct_sys_pfmg.o Removing src/sstruct_ls/HYPRE_sstruct_InterFAC.o Removing src/sstruct_ls/HYPRE_sstruct_bicgstab.o Removing src/sstruct_ls/HYPRE_sstruct_flexgmres.o Removing src/sstruct_ls/HYPRE_sstruct_gmres.o Removing src/sstruct_ls/HYPRE_sstruct_int.o Removing src/sstruct_ls/HYPRE_sstruct_lgmres.o Removing src/sstruct_ls/HYPRE_sstruct_maxwell.o Removing src/sstruct_ls/HYPRE_sstruct_pcg.o Removing src/sstruct_ls/HYPRE_sstruct_split.o Removing src/sstruct_ls/HYPRE_sstruct_sys_pfmg.o Removing src/sstruct_ls/bsearch.o Removing src/sstruct_ls/eliminate_rowscols.o Removing src/sstruct_ls/fac.o Removing src/sstruct_ls/fac_CFInterfaceExtents.o Removing src/sstruct_ls/fac_amr_fcoarsen.obj Removing src/sstruct_ls/fac_amr_rap.obj Removing src/sstruct_ls/fac_amr_zero_data.o Removing src/sstruct_ls/fac_cf_coarsen.o Removing src/sstruct_ls/fac_cfstencil_box.o Removing src/sstruct_ls/fac_interp2.o Removing src/sstruct_ls/fac_relax.o Removing src/sstruct_ls/fac_restrict2.obj Removing src/sstruct_ls/fac_setup2.obj Removing src/sstruct_ls/fac_solve3.o Removing src/sstruct_ls/fac_zero_cdata.o Removing src/sstruct_ls/fac_zero_stencilcoef.obj Removing src/sstruct_ls/krylov.o Removing src/sstruct_ls/krylov_sstruct.o Removing src/sstruct_ls/libHYPRE_sstruct_ls-2.23.0.so Removing src/sstruct_ls/libHYPRE_sstruct_ls.so Removing src/sstruct_ls/maxwell_PNedelec.o Removing src/sstruct_ls/maxwell_PNedelec_bdy.o Removing src/sstruct_ls/maxwell_TV.o Removing src/sstruct_ls/maxwell_TV_setup.o Removing src/sstruct_ls/maxwell_grad.o Removing src/sstruct_ls/maxwell_physbdy.o Removing src/sstruct_ls/maxwell_semi_interp.o Removing src/sstruct_ls/maxwell_solve.o Removing src/sstruct_ls/maxwell_solve2.o Removing src/sstruct_ls/maxwell_zeroBC.o Removing src/sstruct_ls/nd1_amge_interpolation.o Removing src/sstruct_ls/node_relax.obj Removing src/sstruct_ls/sstruct_amr_intercommunication.o Removing src/sstruct_ls/sstruct_owninfo.o Removing src/sstruct_ls/sstruct_recvinfo.o Removing src/sstruct_ls/sstruct_sendinfo.o Removing src/sstruct_ls/sstruct_sharedDOFComm.o Removing src/sstruct_ls/sys_pfmg.o Removing src/sstruct_ls/sys_pfmg_relax.o Removing src/sstruct_ls/sys_pfmg_setup.o Removing src/sstruct_ls/sys_pfmg_setup_interp.o Removing src/sstruct_ls/sys_pfmg_setup_rap.o Removing src/sstruct_ls/sys_pfmg_solve.o Removing src/sstruct_ls/sys_semi_interp.o Removing src/sstruct_ls/sys_semi_restrict.o Removing src/sstruct_mv/F90_HYPRE_sstruct_graph.o Removing src/sstruct_mv/F90_HYPRE_sstruct_grid.o Removing src/sstruct_mv/F90_HYPRE_sstruct_matrix.o Removing src/sstruct_mv/F90_HYPRE_sstruct_stencil.o Removing src/sstruct_mv/F90_HYPRE_sstruct_vector.o Removing src/sstruct_mv/HYPRE_sstruct_graph.o Removing src/sstruct_mv/HYPRE_sstruct_grid.o Removing src/sstruct_mv/HYPRE_sstruct_matrix.o Removing src/sstruct_mv/HYPRE_sstruct_stencil.o Removing src/sstruct_mv/HYPRE_sstruct_vector.o Removing src/sstruct_mv/libHYPRE_sstruct_mv-2.23.0.so Removing src/sstruct_mv/libHYPRE_sstruct_mv.so Removing src/sstruct_mv/sstruct_axpy.o Removing src/sstruct_mv/sstruct_copy.o Removing src/sstruct_mv/sstruct_graph.o Removing src/sstruct_mv/sstruct_grid.o Removing src/sstruct_mv/sstruct_innerprod.o Removing src/sstruct_mv/sstruct_matrix.obj Removing src/sstruct_mv/sstruct_matvec.o Removing src/sstruct_mv/sstruct_scale.o Removing src/sstruct_mv/sstruct_stencil.o Removing src/sstruct_mv/sstruct_vector.obj Removing src/struct_ls/F90_HYPRE_struct_bicgstab.o Removing src/struct_ls/F90_HYPRE_struct_cycred.o Removing src/struct_ls/F90_HYPRE_struct_flexgmres.o Removing src/struct_ls/F90_HYPRE_struct_gmres.o Removing src/struct_ls/F90_HYPRE_struct_hybrid.o Removing src/struct_ls/F90_HYPRE_struct_int.o Removing src/struct_ls/F90_HYPRE_struct_jacobi.o Removing src/struct_ls/F90_HYPRE_struct_lgmres.o Removing src/struct_ls/F90_HYPRE_struct_pcg.o Removing src/struct_ls/F90_HYPRE_struct_pfmg.o Removing src/struct_ls/F90_HYPRE_struct_smg.o Removing src/struct_ls/F90_HYPRE_struct_sparse_msg.o Removing src/struct_ls/HYPRE_struct_bicgstab.o Removing src/struct_ls/HYPRE_struct_cycred.o Removing src/struct_ls/HYPRE_struct_flexgmres.o Removing src/struct_ls/HYPRE_struct_gmres.o Removing src/struct_ls/HYPRE_struct_hybrid.o Removing src/struct_ls/HYPRE_struct_int.obj Removing src/struct_ls/HYPRE_struct_jacobi.o Removing src/struct_ls/HYPRE_struct_lgmres.o Removing src/struct_ls/HYPRE_struct_pcg.obj Removing src/struct_ls/HYPRE_struct_pfmg.o Removing src/struct_ls/HYPRE_struct_smg.o Removing src/struct_ls/HYPRE_struct_sparse_msg.o Removing src/struct_ls/coarsen.o Removing src/struct_ls/cyclic_reduction.obj Removing src/struct_ls/hybrid.o Removing src/struct_ls/jacobi.o Removing src/struct_ls/libHYPRE_struct_ls-2.23.0.so Removing src/struct_ls/libHYPRE_struct_ls.so Removing src/struct_ls/pcg_struct.o Removing src/struct_ls/pfmg.o Removing src/struct_ls/pfmg2_setup_rap.obj Removing src/struct_ls/pfmg3_setup_rap.obj Removing src/struct_ls/pfmg_relax.o Removing src/struct_ls/pfmg_setup.obj Removing src/struct_ls/pfmg_setup_interp.obj Removing src/struct_ls/pfmg_setup_rap.o Removing src/struct_ls/pfmg_setup_rap5.obj Removing src/struct_ls/pfmg_setup_rap7.obj Removing src/struct_ls/pfmg_solve.o Removing src/struct_ls/point_relax.obj Removing src/struct_ls/red_black_constantcoef_gs.obj Removing src/struct_ls/red_black_gs.obj Removing src/struct_ls/semi.o Removing src/struct_ls/semi_interp.obj Removing src/struct_ls/semi_restrict.obj Removing src/struct_ls/semi_setup_rap.obj Removing src/struct_ls/smg.obj Removing src/struct_ls/smg2_setup_rap.obj Removing src/struct_ls/smg3_setup_rap.obj Removing src/struct_ls/smg_axpy.obj Removing src/struct_ls/smg_relax.o Removing src/struct_ls/smg_residual.obj Removing src/struct_ls/smg_setup.o Removing src/struct_ls/smg_setup_interp.obj Removing src/struct_ls/smg_setup_rap.o Removing src/struct_ls/smg_setup_restrict.o Removing src/struct_ls/smg_solve.o Removing src/struct_ls/sparse_msg.o Removing src/struct_ls/sparse_msg2_setup_rap.obj Removing src/struct_ls/sparse_msg3_setup_rap.obj Removing src/struct_ls/sparse_msg_filter.obj Removing src/struct_ls/sparse_msg_interp.obj Removing src/struct_ls/sparse_msg_restrict.obj Removing src/struct_ls/sparse_msg_setup.o Removing src/struct_ls/sparse_msg_setup_rap.o Removing src/struct_ls/sparse_msg_solve.o Removing src/struct_mv/F90_HYPRE_struct_grid.o Removing src/struct_mv/F90_HYPRE_struct_matrix.o Removing src/struct_mv/F90_HYPRE_struct_stencil.o Removing src/struct_mv/F90_HYPRE_struct_vector.o Removing src/struct_mv/HYPRE_struct_grid.o Removing src/struct_mv/HYPRE_struct_matrix.o Removing src/struct_mv/HYPRE_struct_stencil.o Removing src/struct_mv/HYPRE_struct_vector.o Removing src/struct_mv/assumed_part.o Removing src/struct_mv/box.o Removing src/struct_mv/box_algebra.o Removing src/struct_mv/box_boundary.o Removing src/struct_mv/box_manager.o Removing src/struct_mv/communication_info.o Removing src/struct_mv/computation.o Removing src/struct_mv/libHYPRE_struct_mv-2.23.0.so Removing src/struct_mv/libHYPRE_struct_mv.so Removing src/struct_mv/project.o Removing src/struct_mv/struct_axpy.obj Removing src/struct_mv/struct_communication.obj Removing src/struct_mv/struct_copy.obj Removing src/struct_mv/struct_grid.o Removing src/struct_mv/struct_innerprod.obj Removing src/struct_mv/struct_io.o Removing src/struct_mv/struct_matrix.obj Removing src/struct_mv/struct_matrix_mask.o Removing src/struct_mv/struct_matvec.obj Removing src/struct_mv/struct_scale.obj Removing src/struct_mv/struct_stencil.o Removing src/struct_mv/struct_vector.obj Removing src/utilities/F90_HYPRE_error.o Removing src/utilities/F90_HYPRE_general.o Removing src/utilities/HYPRE_handle.o Removing src/utilities/HYPRE_version.o Removing src/utilities/amg_linklist.o Removing src/utilities/ap.o Removing src/utilities/binsearch.o Removing src/utilities/complex.o Removing src/utilities/cuda_utils.obj Removing src/utilities/error.o Removing src/utilities/exchange_data.o Removing src/utilities/fortran_matrix.o Removing src/utilities/general.obj Removing src/utilities/handle.obj Removing src/utilities/hopscotch_hash.o Removing src/utilities/int_array.obj Removing src/utilities/libHYPRE_utilities-2.23.0.so Removing src/utilities/libHYPRE_utilities.so Removing src/utilities/log.o Removing src/utilities/memory.obj Removing src/utilities/merge_sort.o Removing src/utilities/mpi_comm_f2c.o Removing src/utilities/mpistubs.o Removing src/utilities/nvtx.obj Removing src/utilities/omp_device.obj Removing src/utilities/prefix_sum.o Removing src/utilities/printf.o Removing src/utilities/qsort.o Removing src/utilities/qsplit.o Removing src/utilities/random.o Removing src/utilities/threading.o Removing src/utilities/timer.o Removing src/utilities/timing.o Removing src/utilities/utilities.o Executing: ['git', 'checkout', '-f', '91935f22da3cdf77f44bbc166eaaf47f603c8f93'] Executing: ftn -v Executing: ftn -V stdout: nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. Executing: ftn --version stdout: nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. Executing: ftn -V stdout: nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. Executing: ftn --version stdout: nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. Executing: ftn -V stdout: nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. Executing: ftn --version stdout: nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 NVIDIA Compilers and Tools Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved. Removing configure arguments ['AR="/usr/bin/ar"', 'ARFLAGS="cr"'] Removing configure arguments [] Makefile /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/lib/petsc/conf/pkg.conf.hypre has correct checksum Do not need to rebuild HYPRE Checking for library in Download HYPRE: ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib/libHYPRE.a'] Contents of /global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9: ['include', 'bin', 'etc', 'lib', 'share'] Contents /global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib: ['libHYPRE-2.23.0.so', 'libsc-2.0.so', 'libp4est.a', 'libpetsc.so', 'libpetsc.so.3.016', 'libp4est-2.0.7-1727.so', 'libHYPRE.so', 'libsc.la', 'libsc.so', 'libpetsc.so.3.016.1', 'libsc.a', 'libp4est.so', 'petsc', 'libp4est.la', 'pkgconfig'] ============================================================================================= TESTING: check from config.libraries(/global/u2/m/madams/petsc/config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [HYPRE_IJMatrixCreate] in library ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib/libHYPRE.a'] ['-Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib', '-Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib', '-Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib', '-Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-L/opt/cray/pe/dsmml/0.2.2/dsmml/lib', '-Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7', '-L/usr/lib64/gcc/x86_64-suse-linux/7', '-lstdc++', '-ldl', '-ldarshan', '-lz', '-lsci_nvidia_mpi_mp', '-lsci_nvidia_mp', '-lmpifort_nvidia', '-lmpi_nvidia', '-ldsmml', '-lxpmem', '-lacchost', '-laccdevaux', '-laccdevice', '-lhxrt_dev_110', '-lnvhpcman', '-lcudadevice', '-lnvf', '-lnvomp', '-lnvhpcatm', '-latomic', '-lpthread', '-lnvcpumath-avx2', '-lnsnvc', '-lnvc', '-lrt', '-lm', '-lgcc_s', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib', '-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64/libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/libcudart.a', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs/libcuda.so'] Checking directory of requested libraries:/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib for first library:libHYPRE. Files in directory:['libHYPRE-2.23.0.so', 'libsc-2.0.so', 'libp4est.a', 'libpetsc.so', 'libpetsc.so.3.016', 'libp4est-2.0.7-1727.so', 'libHYPRE.so', 'libsc.la', 'libsc.so', 'libpetsc.so.3.016.1', 'libsc.a', 'libp4est.so', 'petsc', 'libp4est.la', 'pkgconfig'] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char HYPRE_IJMatrixCreate(); static void _check_HYPRE_IJMatrixCreate() { HYPRE_IJMatrixCreate(); } int main() { _check_HYPRE_IJMatrixCreate();; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.o -Wl,-rpath,/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -L/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -lHYPRE -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char HYPRE_IJMatrixCreate(); static void _check_HYPRE_IJMatrixCreate() { HYPRE_IJMatrixCreate(); } void dummy(void) {_check_HYPRE_IJMatrixCreate();} ===== Checking linker Executing: ftn -c -o /tmp/petsc-AzrmlS/config.compilers/conftest.o -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /tmp/petsc-AzrmlS/config.compilers/conftest -g -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.compilers/conftest.o /tmp/petsc-AzrmlS/config.compilers/confc.o -Wl,-rpath,/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -L/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -lHYPRE -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -lcufft -lcublas -lcusparse -lcusolver -lcurand -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -lcudart -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcuda -lquadmath -lstdc++ -ldl Defined "HAVE_LIBHYPRE" to "1" Checking for optional headers [] in Download HYPRE: ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include'] ============================================================================================= TESTING: checkInclude from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include'] Found header files [] in ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include'] Checking for headers ['HYPRE.h'] in Download HYPRE: ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include'] ============================================================================================= TESTING: checkInclude from config.headers(/global/u2/m/madams/petsc/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['HYPRE.h'] in ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include'] Checking include with compiler flags var CPPFLAGS ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include', '/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.zlib -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.headers -I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include /tmp/petsc-AzrmlS/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['HYPRE.h'] in ['/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include'] ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.hypre/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include /tmp/petsc-AzrmlS/config.packages.hypre/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include "HYPRE_config.h" int main() { #if defined(HYPRE_BIGINT) #error HYPRE_BIGINT defined! #endif #if defined(HYPRE_MIXEDINT) #error HYPRE_MIXEDINT defined! #endif ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.hypre/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include /tmp/petsc-AzrmlS/config.packages.hypre/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include "HYPRE_config.h" int main() { #if defined(HYPRE_MIXEDINT) #error HYPRE_MIXEDINT defined! #endif ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.packages.hypre/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include /tmp/petsc-AzrmlS/config.packages.hypre/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/config.packages.hypre/conftest.c", line 7: catastrophic error: #error directive: HYPRE_USING_GPU defined! #error HYPRE_USING_GPU defined! ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-AzrmlS/config.packages.hypre/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include "HYPRE_config.h" int main() { #if defined(HYPRE_USING_GPU) #error HYPRE_USING_GPU defined! #endif ; return 0; } Defined "HAVE_HYPRE_DEVICE" to "1" ============================================================================================= TESTING: checkVersion from config.packages.hypre(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "HYPRE_config.h" petscpkgver(HYPRE_RELEASE_VERSION); Executing: cc -E -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.zlib -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.packages.hypre -I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include /tmp/petsc-AzrmlS/config.packages.hypre/conftest.c For hypre need 2.14 <= 2.23.0 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.hypre(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.hypre 5.266995 ============================================================================================= TESTING: consistencyChecks from config.packages.Trilinos(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Trilinos(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.Trilinos 0.002544 ============================================================================================= TESTING: consistencyChecks from config.packages.xSDKTrilinos(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.xSDKTrilinos(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.xSDKTrilinos 0.001707 ============================================================================================= TESTING: consistencyChecks from config.packages.mstk(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mstk(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.mstk 0.001677 ============================================================================================= TESTING: consistencyChecks from config.packages.MFEM(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MFEM(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/MFEM.py:218) Defined make rule "mfem-build" with dependencies "" and code [] Defined make rule "mfem-install" with dependencies "" and code [] child config.packages.MFEM 0.002352 ============================================================================================= TESTING: consistencyChecks from config.packages.AMReX(/global/u2/m/madams/petsc/config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.AMReX(/global/u2/m/madams/petsc/config/BuildSystem/config/packages/AMReX.py:151) Defined make rule "amrex-build" with dependencies "" and code [] Defined make rule "amrex-install" with dependencies "" and code [] child config.packages.AMReX 0.002355 ============================================================================================= TESTING: configureRTLDDefault from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:706) ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/PETSc.Configure/conftest.c", line 4: error: identifier "RTLD_DEFAULT" is undefined void *ptr = RTLD_DEFAULT; ^ 1 error detected in the compilation of "/tmp/petsc-AzrmlS/PETSc.Configure/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include void *ptr = RTLD_DEFAULT; int main() { ; return 0; } ============================================================================================= TESTING: configurePrefetch from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:524) Sees if there are any prefetch functions supported Executing: uname -s stdout: Linux ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA); ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_XMMINTRIN_H" to "1" Defined "Prefetch(a,b,c)" to "_mm_prefetch((const char*)(a),(c))" Defined "PREFETCH_HINT_NTA" to "_MM_HINT_NTA" Defined "PREFETCH_HINT_T0" to "_MM_HINT_T0" Defined "PREFETCH_HINT_T1" to "_MM_HINT_T1" Defined "PREFETCH_HINT_T2" to "_MM_HINT_T2" ============================================================================================= TESTING: configureUnused from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:592) Sees if __attribute((unused)) is supported ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" __attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;} int main() { int i = 0; int j = myfunc(&i); typedef void* atype; __attribute((unused)) atype a; ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "UNUSED" to "__attribute((unused))" ============================================================================================= TESTING: configureDeprecated from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:610) Check if __attribute((deprecated)) is supported ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/PETSc.Configure/conftest.c", line 3: warning: function "myfunc" was declared but never referenced __attribute((deprecated)) static int myfunc(void) { return 1;} ^ Source: #include "confdefs.h" #include "conffix.h" __attribute((deprecated)) static int myfunc(void) { return 1;} int main() { ; return 0; } Defined "DEPRECATED_FUNCTION(why)" to "__attribute((deprecated))" Defined "DEPRECATED_TYPEDEF(why)" to "__attribute((deprecated))" ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" enum E {oldval __attribute((deprecated)), newval }; int main() { ; return 0; } Defined "DEPRECATED_ENUM(why)" to "__attribute((deprecated))" ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define TEST _Pragma("GCC warning "Testing _Pragma"") value int main() { ; return 0; } Defined "DEPRECATED_MACRO(why)" to "_Pragma(why)" ============================================================================================= TESTING: configureIsatty from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:604) Check if the Unix C function isatty() works correctly Actually just assumes it does not work correctly on batch systems Defined "USE_ISATTY" to "1" ============================================================================================= TESTING: configureExpect from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:659) Sees if the __builtin_expect directive is supported ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__builtin_expect(0,1)) return 1;; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_BUILTIN_EXPECT" to "1" ============================================================================================= TESTING: configureAlign from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:643) Check if __attribute(aligned) is supported ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" struct mystruct {int myint;} __attribute((aligned(16))); char assert_aligned[(sizeof(struct mystruct)==16)*2-1]; int main() { ; return 0; } Defined "ATTRIBUTEALIGNED(size)" to "__attribute((aligned(size)))" Defined "HAVE_ATTRIBUTEALIGNED" to "1" ============================================================================================= TESTING: configureFunctionName from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:666) Sees if the compiler supports __func__ or a variant. ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "FUNCTION_NAME_C" to "__func__" ===== Checking compiler Executing: CC -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } ===== Checking linker Executing: CC -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 /tmp/petsc-AzrmlS/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Executing: CC -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "FUNCTION_NAME_CXX" to "__func__" ============================================================================================= TESTING: configureIntptrt from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:684) Determine what to use for uintptr_t ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/PETSc.Configure/conftest.c", line 6: warning: variable "i" was declared but never referenced int x; uintptr_t i = (uintptr_t)&x;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int x; uintptr_t i = (uintptr_t)&x;; return 0; } Defined "UINTPTR_T" to "uintptr_t" ============================================================================================= TESTING: configureSolaris from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:711) Solaris specific stuff ============================================================================================= TESTING: configureLinux from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:724) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ============================================================================================= TESTING: configureWin32 from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:730) Win32 non-cygwin specific stuff Checking for functions [GetComputerName] in library ['Kernel32.lib'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/config.libraries/conftest.c", line 4: catastrophic error: cannot open source file "windows.h" #include ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-AzrmlS/config.libraries/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Checking for functions [GetComputerName] in library ['kernel32'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/config.libraries/conftest.c", line 4: catastrophic error: cannot open source file "windows.h" #include ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-AzrmlS/config.libraries/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Checking for functions [GetUserName] in library ['Advapi32.lib'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/config.libraries/conftest.c", line 4: catastrophic error: cannot open source file "windows.h" #include ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-AzrmlS/config.libraries/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Checking for functions [GetUserName] in library ['advapi32'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/config.libraries/conftest.c", line 4: catastrophic error: cannot open source file "windows.h" #include ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-AzrmlS/config.libraries/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Checking for functions [GetDC] in library ['User32.lib'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/config.libraries/conftest.c", line 4: catastrophic error: cannot open source file "windows.h" #include ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-AzrmlS/config.libraries/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Checking for functions [GetDC] in library ['user32'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/config.libraries/conftest.c", line 4: catastrophic error: cannot open source file "windows.h" #include ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-AzrmlS/config.libraries/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Checking for functions [CreateCompatibleDC] in library ['Gdi32.lib'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/config.libraries/conftest.c", line 4: catastrophic error: cannot open source file "windows.h" #include ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-AzrmlS/config.libraries/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Checking for functions [CreateCompatibleDC] in library ['gdi32'] [] ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/config.libraries/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.libraries/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/config.libraries/conftest.c", line 4: catastrophic error: cannot open source file "windows.h" #include ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-AzrmlS/config.libraries/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Checking for type: int32_t ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/config.types/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/config.types/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/PETSc.Configure/conftest.c", line 6: warning: variable "u" was declared but never referenced uid_t u; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; ; return 0; } ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: "/tmp/petsc-AzrmlS/PETSc.Configure/conftest.c", line 8: warning: variable "a" was declared but never referenced int a=R_OK; ^ Source: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int a=0; if (S_ISDIR(a)){} ; return 0; } Executing: cc -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/PETSc.Configure/conftest.c", line 3: catastrophic error: cannot open source file "windows.h" #include ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-AzrmlS/PETSc.Configure/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/tmp/petsc-AzrmlS/PETSc.Configure/conftest.c", line 3: catastrophic error: cannot open source file "windows.h" #include ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-AzrmlS/PETSc.Configure/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int flags = O_BINARY;; return 0; } Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" Defined "DIR" to ""/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9"" Defined make macro "wPETSC_DIR" to "/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9" Defined "ARCH" to """" ============================================================================================= TESTING: configureCygwinBrokenPipe from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:808) Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make http://cygwin.com/ml/cygwin/2013-05/msg00340.html Executing: uname -s stdout: Linux ============================================================================================= TESTING: configureDefaultArch from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:824) ============================================================================================= TESTING: configureScript from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:841) Output a script in the conf directory which will reproduce the configuration ============================================================================================= TESTING: configureInstall from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:880) Setup the directories for installation Defined make rule "print_mesg_after_build" with dependencies "" and code ['-@echo "========================================="', '-@echo "Now to install the libraries do:"', '-@echo "${MAKE_USER} PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} install"', '-@echo "========================================="'] ============================================================================================= TESTING: configureGCOV from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:896) ============================================================================================= TESTING: configureAtoll from PETSc.Configure(/global/u2/m/madams/petsc/config/PETSc/Configure.py:587) Checks if atoll exists ===== Checking linker Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { long v = atoll("25"); return 0; } Executing: cc -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_ATOLL" to "1" ============================================================================================= Executing: CC -VV Defined "USE_SOCKET_VIEWER" to "1" ===== Checking compiler Executing: cc -c -o /tmp/petsc-AzrmlS/PETSc.Configure/conftest.o -I/tmp/petsc-AzrmlS/config.compilerFlags -I/tmp/petsc-AzrmlS/config.utilities.closure -I/tmp/petsc-AzrmlS/config.compilersFortran -I/tmp/petsc-AzrmlS/config.headers -I/tmp/petsc-AzrmlS/config.utilities.cacheDetails -I/tmp/petsc-AzrmlS/config.functions -I/tmp/petsc-AzrmlS/config.utilities.featureTestMacros -I/tmp/petsc-AzrmlS/config.utilities.missing -I/tmp/petsc-AzrmlS/PETSc.options.sharedLibraries -I/tmp/petsc-AzrmlS/PETSc.options.scalarTypes -I/tmp/petsc-AzrmlS/config.packages.MPI -I/tmp/petsc-AzrmlS/config.packages.pthread -I/tmp/petsc-AzrmlS/config.setCompilers -I/tmp/petsc-AzrmlS/config.compilers -I/tmp/petsc-AzrmlS/config.packages.BlasLapack -I/tmp/petsc-AzrmlS/config.packages.hypre -I/tmp/petsc-AzrmlS/config.types -I/tmp/petsc-AzrmlS/config.libraries -I/tmp/petsc-AzrmlS/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC /tmp/petsc-AzrmlS/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { setsockopt(0,SOL_SOCKET,SO_REUSEADDR,0,0); return 0; } Defined "HAVE_SO_REUSEADDR" to "1" ============================================================================================= Defined "MPICC_SHOW" to ""Unavailable"" Defined make macro "CC_FLAGS" to "-g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC " Defined "HAVE_CXX" to "1" Defined make macro "CXXPP_FLAGS" to "" Defined make macro "CXX_FLAGS" to "-g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 " Defined make macro "CXX_LINKER" to "CC" Defined make macro "CXX_LINKER_FLAGS" to " -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu" Defined make macro "CPP_FLAGS" to " " Defined make macro "PCC" to "cc" Defined make macro "PCC_FLAGS" to "-g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC " Defined make macro "CC_SUFFIX" to "o" Defined make macro "PCC_LINKER" to "cc" Defined make macro "PCC_LINKER_FLAGS" to " -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC" Defined make macro "CC_LINKER_SUFFIX" to "" Defined "HAVE_FORTRAN" to "1" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to "-g -mp=gpu -KPIC " Defined make macro "FC_SUFFIX" to "o" Defined make macro "FC_LINKER" to "ftn" Defined make macro "FC_LINKER_FLAGS" to " -g -mp=gpu -KPIC " Defined make macro "FC_MODULE_FLAG" to "-I" Defined make macro "FC_MODULE_OUTPUT_FLAG" to "-module " Defined make macro "CUDAC_FLAGS" to " -Xcompiler -fPIC -O3 -std=c++17 -gencode arch=compute_80,code=sm_80 -Wno-deprecated-gpu-targets" Defined make macro "SL_LINKER" to "cc" Defined make macro "SL_LINKER_FLAGS" to "${PCC_LINKER_FLAGS}" Defined make macro "SL_LINKER_SUFFIX" to "so" Defined "SLSUFFIX" to ""so"" Defined make macro "SL_LINKER_LIBS" to "${PETSC_EXTERNAL_LIB_BASIC}" Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" ============================================================================================= Defined "HAVE_HYPRE" to "1" Defined make macro "HYPRE_LIB" to "-Wl,-rpath,/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -L/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -lHYPRE" Defined make macro "HYPRE_INCLUDE" to "-I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include" Defined "HAVE_P4EST" to "1" Defined make macro "P4EST_LIB" to "-Wl,-rpath,/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -L/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -lp4est -lsc" Defined make macro "P4EST_INCLUDE" to "-I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include" Defined make macro "BLASLAPACK_LIB" to "" Defined make macro "BLASLAPACK_INCLUDE" to "" Defined "HAVE_PTHREAD" to "1" Defined make macro "PTHREAD_LIB" to "" Defined make macro "PTHREAD_INCLUDE" to "" Defined "HAVE_MATHLIB" to "1" Defined make macro "MATHLIB_LIB" to "" Defined make macro "MATHLIB_INCLUDE" to "" Defined "HAVE_ZLIB" to "1" Defined make macro "ZLIB_LIB" to "" Defined make macro "ZLIB_INCLUDE" to "" Defined "HAVE_REGEX" to "1" Defined make macro "REGEX_LIB" to "" Defined make macro "REGEX_INCLUDE" to "" Defined "HAVE_SOWING" to "1" Defined make macro "SOWING_LIB" to "" Defined make macro "SOWING_INCLUDE" to "" Defined make macro "MPI_LIB" to "" Defined make macro "MPI_INCLUDE" to "" Defined "HAVE_DEVICE" to "1" Defined "HAVE_CUDA" to "1" Defined make macro "CUDA_LIB" to "-Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcufft -lcublas -lcusparse -lcusolver -lcurand -lcudart -lcuda" Defined make macro "CUDA_INCLUDE" to "-I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include" Defined "HAVE_X" to "1" Defined make macro "X_LIB" to "-lX11" Defined make macro "X_INCLUDE" to "" Defined make macro "PETSC_EXTERNAL_LIB_BASIC" to "-Wl,-rpath,/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -L/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lHYPRE -lp4est -lsc -lcufft -lcublas -lcusparse -lcusolver -lcurand -lcudart -lcuda -lX11 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -lquadmath -lstdc++ -ldl" Defined make macro "PETSC_CC_INCLUDES" to "-I/global/homes/m/madams/petsc/include -I/global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/include -I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include" Defined make macro "PETSC_CC_INCLUDES_INSTALL" to "-I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include" Defined make macro "PETSC_FC_INCLUDES" to "-I/global/homes/m/madams/petsc/include -I/global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/include -I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include" Defined make macro "PETSC_FC_INCLUDES_INSTALL" to "-I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include" Defined "LIB_DIR" to ""/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib"" Defined make macro "LIBNAME" to "${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}" Defined make macro "SHLIBS" to "libpetsc" Defined make macro "PETSC_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_KSP_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TS_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TAO_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_WITH_EXTERNAL_LIB" to "-L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -L/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lpetsc -lHYPRE -lp4est -lsc -lcufft -lcublas -lcusparse -lcusolver -lcurand -lcudart -lcuda -lX11 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -lquadmath -lstdc++ -ldl" Defined "USE_SINGLE_LIBRARY" to "1" Defined make macro "PETSC_SYS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_VEC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_MAT_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_DM_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_KSP_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_SNES_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TAO_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CHARACTERISTIC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CONTRIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "CONFIGURE_OPTIONS" to "--CFLAGS=\" -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu\" --CXXFLAGS=\" -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu\" --FFLAGS=\" -g -mp=gpu\" --with-cc=cc --with-cxx=CC --with-fc=ftn --with-cudac=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc --with-debugging=0 --download-hypre=1 --with-cuda=1 --with-cuda-arch=80 --with-mpiexec=srun --with-batch=0 --download-p4est=1 --with-zlib=1 --with-make-np=8 --prefix=/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9 PETSC_ARCH=arch-perlmutter-opt-nvidia-cuda" ================================================================================ child PETSc.Configure 11.176870 child sum 226.595687 child total 226.638994 **** arch-perlmutter-opt-nvidia-cuda/lib/petsc/conf/petscvariables **** C_VERSION = nvc 21.9-0 64-bit target on x86-64 Linux -tp zen-64 AR_ARGFILE = yes FC_DEFINE_FLAG = -D CUDA_DEPFLAGS = -MMD FC_VERSION = nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 CUDA_VERSION = nvcc: NVIDIA (R) Cuda compiler driver AR_FLAGS = cr Cxx_VERSION = nvc++ 21.9-0 64-bit target on x86-64 Linux -tp zen-64 FAST_AR_FLAGS = Scq FC_MODULE_OUTPUT_FLAG = -module PETSC_LANGUAGE = CONLY FC_LINKER_FLAGS = -g -mp=gpu -KPIC LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX} SL_LINKER = cc CC_FLAGS = -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC SOWING_LIB = PETSC_PRECISION = double PETSC_LIB_BASIC = -lpetsc X_LIB = -lX11 FC_FLAGS = -g -mp=gpu -KPIC BLASLAPACK_LIB = PETSC_MAT_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC = cc SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC} SHLIBS = libpetsc MATHLIB_INCLUDE = MPI_LIB = PETSC_SNES_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} REGEX_INCLUDE = PETSC_EXTERNAL_LIB_BASIC = -Wl,-rpath,/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -L/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lHYPRE -lp4est -lsc -lcufft -lcublas -lcusparse -lcusolver -lcurand -lcudart -lcuda -lX11 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -lquadmath -lstdc++ -ldl PETSC_TS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS} CUDAC_FLAGS = -Xcompiler -fPIC -O3 -std=c++17 -gencode arch=compute_80,code=sm_80 -Wno-deprecated-gpu-targets MATHLIB_LIB = CC_SUFFIX = o PETSC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_FC_INCLUDES_INSTALL = -I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include CONFIGURE_OPTIONS = --CFLAGS=\" -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu\" --CXXFLAGS=\" -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu\" --FFLAGS=\" -g -mp=gpu\" --with-cc=cc --with-cxx=CC --with-fc=ftn --with-cudac=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc --with-debugging=0 --download-hypre=1 --with-cuda=1 --with-cuda-arch=80 --with-mpiexec=srun --with-batch=0 --download-p4est=1 --with-zlib=1 --with-make-np=8 --prefix=/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9 PETSC_ARCH=arch-perlmutter-opt-nvidia-cuda PETSC_CHARACTERISTIC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CXXPP_FLAGS = PTHREAD_LIB = PETSC_SCALAR = real PETSC_FC_INCLUDES = -I/global/homes/m/madams/petsc/include -I/global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/include -I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include CPP_FLAGS = PETSC_WITH_EXTERNAL_LIB = -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -L/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -Wl,-rpath,/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -Wl,-rpath,/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.0/lib64 -lpetsc -lHYPRE -lp4est -lsc -lcufft -lcublas -lcusparse -lcusolver -lcurand -lcudart -lcuda -lX11 -lstdc++ -ldl -ldarshan -lz -lsci_nvidia_mpi_mp -lsci_nvidia_mp -lmpifort_nvidia -lmpi_nvidia -ldsmml -lxpmem -lacchost -laccdevaux -laccdevice -lhxrt_dev_110 -lnvhpcman -lcudadevice -lnvf -lnvomp -lnvhpcatm -latomic -lpthread -lnvcpumath-avx2 -lnsnvc -lnvc -lrt -lm -lgcc_s -lquadmath -lstdc++ -ldl PETSC_KSP_LIB_BASIC = -lpetsc FPP_FLAGS = HYPRE_INCLUDE = -I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include PETSC_CC_INCLUDES_INSTALL = -I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include FC_LINKER = ftn HYPRE_LIB = -Wl,-rpath,/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -L/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -lHYPRE PETSC_KSP_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CXX_FLAGS = -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 PCC_LINKER_FLAGS = -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC PETSC_CONTRIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CXX_LINKER_FLAGS = -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu PCC_LINKER = cc PETSC_SYS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC_FLAGS = -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC CUDA_LIB = -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcufft -lcublas -lcusparse -lcusolver -lcurand -lcudart -lcuda PTHREAD_INCLUDE = PETSC_CC_INCLUDES = -I/global/homes/m/madams/petsc/include -I/global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/include -I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include P4EST_INCLUDE = -I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include CXX_LINKER = CC PETSC_TAO_LIB_BASIC = -lpetsc BLASLAPACK_INCLUDE = CUDA_INCLUDE = -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include PETSC_TS_LIB_BASIC = -lpetsc PETSC_VEC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CC_LINKER_SUFFIX = SL_LINKER_SUFFIX = so PETSC_DM_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} FC_MODULE_FLAG = -I P4EST_LIB = -Wl,-rpath,/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -L/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -lp4est -lsc wPETSC_DIR = /global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9 X_INCLUDE = ZLIB_INCLUDE = SOWING_INCLUDE = PETSC_TAO_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} MPI_INCLUDE = REGEX_LIB = FC_SUFFIX = o ZLIB_LIB = SHELL = /bin/bash GREP = /usr/bin/grep MV = /usr/bin/mv PYTHON = /usr/bin/python MKDIR = /usr/bin/mkdir -p SEDINPLACE = /usr/bin/sed -i M4 = /usr/bin/m4 SED = /usr/bin/sed DIFF = /usr/bin/diff -w RM = /usr/bin/rm -f CP = /usr/bin/cp CC_LINKER_SLFLAG = -Wl,-rpath, CXXPP = CC -E CC = cc RANLIB = /usr/bin/ranlib LD_SHARED = cc CXX = CC FC = ftn CUDAC = /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc FC_LINKER_SLFLAG = -Wl,-rpath, CPP = cc -E FPP = ftn -E DYNAMICLINKER = cc AR_LIB_SUFFIX = a AR = /usr/bin/ar CUDAPP = /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -E CLANGUAGE = C GIT = git PREFIXDIR = /global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9 PETSC_SCALAR_SIZE = 64 PETSC_INDEX_SIZE = 32 OMAKE_PRINTDIR = /usr/bin/gmake --print-directory MAKE_NP = 8 NPMAX = 256 MAKE = /usr/bin/gmake MAKE_PAR_OUT_FLG = --output-sync=recurse OMAKE = /usr/bin/gmake --no-print-directory MAKE_LOAD = 307.2 MAKE_TEST_NP = 94 MAKE_USER = make SL_LINKER_FUNCTION = -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2)) SONAME_FUNCTION = $(1).$(SL_LINKER_SUFFIX).$(2) BUILDSHAREDLIB = yes GDB = /usr/bin/gdb DSYMUTIL = true MPIEXEC = /usr/bin/srun MPICXX_INCLUDES = -I/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/include -I/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/include -I/opt/cray/pe/dsmml/0.2.2/dsmml//include -I/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/include HOSTNAME = hostname PING = ping MPICXX_LIBS = -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-no-as-needed -Wl,--as-needed,-lsci_nvidia_mpi,--no-as-needed -Wl,--as-needed,-lsci_nvidia,--no-as-needed -Wl,--as-needed,-lmpi_nvidia,--no-as-needed -Wl,--as-needed,-ldsmml,--no-as-needed -ldarshan -lz -ldl -lxpmem CUDA_CXX = gcc SYSTEMNVCC = /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc CMAKE = /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/cmake CTEST = /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/ctest DOCTEXT = /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/bin/doctext BIB2HTML = /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/bin/bib2html BFORT = /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/bin/bfort MAPNAMES = /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/bin/mapnames PETSC_TEST_OPTIONS = -use_gpu_aware_mpi 0 -nox -nox_warning **** arch-perlmutter-opt-nvidia-cuda/lib/petsc/conf/petscrules **** print_mesg_after_build: -@echo "=========================================" -@echo "Now to install the libraries do:" -@echo "${MAKE_USER} PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} install" -@echo "=========================================" libc: ${LIBNAME}(${OBJSC}) libcxx: ${LIBNAME}(${OBJSCXX}) libcu: ${LIBNAME}(${OBJSCU}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} shared_arch: shared_linux amrex-build: amrex-install: mfem-build: mfem-install: slepc-build: slepc-install: bamg-build: bamg-install: hpddm-build: hpddm-install: libmesh-build: libmesh-install: petsc4py-build: petsc4py-install: petsc4pytest: **** arch-perlmutter-opt-nvidia-cuda/include/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_ARCH "" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_Alignx(a,b) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CUDA_GENERATION 80 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated)) #define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated)) #define PETSC_DEPRECATED_MACRO(why) _Pragma(why) #define PETSC_DEPRECATED_TYPEDEF(why) __attribute((deprecated)) #define PETSC_DIR "/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9" #define PETSC_DIR_SEPARATOR '/' #define PETSC_FORTRAN_CHARLEN_T int #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CUDA 1 #define PETSC_HAVE_CUDA_DIALECT_CXX03 1 #define PETSC_HAVE_CUDA_DIALECT_CXX11 1 #define PETSC_HAVE_CUDA_DIALECT_CXX14 1 #define PETSC_HAVE_CUDA_DIALECT_CXX17 1 #define PETSC_HAVE_CUDA_VERSION_11PLUS 1 #define PETSC_HAVE_CUSOLVERDNDPOTRI 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX_FIX 1 #define PETSC_HAVE_CXX_DIALECT_CXX03 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_CXX_DIALECT_CXX17 1 #define PETSC_HAVE_DEVICE 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_F90_2PTR_ARG 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_HYPRE 1 #define PETSC_HAVE_HYPRE_DEVICE 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPICH_NUMVERSION 30400002 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_P4EST 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_REAL___FLOAT128 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SOWING 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_X 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LIB_DIR "/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib" #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 16 #define PETSC_MPICC_SHOW "Unavailable" #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PYTHON_EXE "/usr/bin/python" #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_SLSUFFIX "so" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_INFO 1 #define PETSC_USE_ISATTY 1 #define PETSC_USE_LOG 1 #define PETSC_USE_MALLOC_COALESCED 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_VERSION_BRANCH_GIT "adams/fix_mat_ex5k" #define PETSC_VERSION_DATE_GIT "2021-12-08 08:59:23 -0500" #define PETSC_VERSION_GIT "v3.16.1-442-gebb4a459f5" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #endif **** arch-perlmutter-opt-nvidia-cuda/include/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif **** arch-perlmutter-opt-nvidia-cuda/include/petscpkg_version.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_PKG_MPI_VERSION_MAJOR 3 #define PETSC_PKG_MPI_VERSION_MINOR 0 #define PETSC_PKG_MPI_VERSION_SUBMINOR 0 #define PETSC_PKG_MPI_VERSION_ PETSC_PKG_MPI_VERSION_EQ #define PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_MPI_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_CUDA_VERSION_MAJOR 11 #define PETSC_PKG_CUDA_VERSION_MINOR 4 #define PETSC_PKG_CUDA_VERSION_SUBMINOR 0 #define PETSC_PKG_CUDA_VERSION_ PETSC_PKG_CUDA_VERSION_EQ #define PETSC_PKG_CUDA_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_CUDA_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_CUDA_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_CUDA_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_CUDA_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_CUDA_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_CUDA_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_CUDA_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_CUDA_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_CUDA_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_CUDA_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_CUDA_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_CUDA_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_CUDA_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_CUDA_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_CUDA_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_CUDA_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_ZLIB_VERSION_MAJOR 1 #define PETSC_PKG_ZLIB_VERSION_MINOR 2 #define PETSC_PKG_ZLIB_VERSION_SUBMINOR 11 #define PETSC_PKG_ZLIB_VERSION_ PETSC_PKG_ZLIB_VERSION_EQ #define PETSC_PKG_ZLIB_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_ZLIB_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_ZLIB_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_ZLIB_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_ZLIB_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_ZLIB_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_ZLIB_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_ZLIB_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_ZLIB_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_ZLIB_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_ZLIB_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_ZLIB_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_ZLIB_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_ZLIB_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_ZLIB_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_ZLIB_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_ZLIB_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_HYPRE_VERSION_MAJOR 2 #define PETSC_PKG_HYPRE_VERSION_MINOR 23 #define PETSC_PKG_HYPRE_VERSION_SUBMINOR 0 #define PETSC_PKG_HYPRE_VERSION_ PETSC_PKG_HYPRE_VERSION_EQ #define PETSC_PKG_HYPRE_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_HYPRE_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_HYPRE_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_HYPRE_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_HYPRE_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_HYPRE_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_HYPRE_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_HYPRE_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_HYPRE_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_HYPRE_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_HYPRE_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_HYPRE_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_HYPRE_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_HYPRE_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_HYPRE_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_HYPRE_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_HYPRE_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #endif Attempting to save configure hash file: arch-perlmutter-opt-nvidia-cuda/lib/petsc/conf/configure-hash Saved configure hash file: arch-perlmutter-opt-nvidia-cuda/lib/petsc/conf/configure-hash Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- PETSc: File creation : Generated Fortran stubs Build : Set default architecture to arch-perlmutter-opt-nvidia-cuda in lib/petsc/conf/petscvariables File creation : Created arch-perlmutter-opt-nvidia-cuda/lib/petsc/conf/reconfigure-arch-perlmutter-opt-nvidia-cuda.py for automatic reconfiguration Framework: RDict update : Substitutions were stored in RDict with parent None File creation : Created makefile configure header arch-perlmutter-opt-nvidia-cuda/lib/petsc/conf/petscvariables File creation : Created makefile configure header arch-perlmutter-opt-nvidia-cuda/lib/petsc/conf/petscrules File creation : Created configure header arch-perlmutter-opt-nvidia-cuda/include/petscconf.h File creation : Created C specific configure header arch-perlmutter-opt-nvidia-cuda/include/petscfix.h File creation : Created configure pkg header arch-perlmutter-opt-nvidia-cuda/include/petscpkg_version.h Compilers: C Compiler: cc -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC Version: nvc 21.9-0 64-bit target on x86-64 Linux -tp zen-64 CUDA Compiler: /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc -Xcompiler -fPIC -O3 -std=c++17 -gencode arch=compute_80,code=sm_80 -Wno-deprecated-gpu-targets Version: nvcc: NVIDIA (R) Cuda compiler driver C++ Compiler: CC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC -std=c++17 Version: nvc++ 21.9-0 64-bit target on x86-64 Linux -tp zen-64 Fortran Compiler: ftn -g -mp=gpu -KPIC Version: nvfortran 21.9-0 64-bit target on x86-64 Linux -tp zen-64 Linkers: Shared linker: cc -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC Dynamic linker: cc -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu -KPIC Libraries linked against: -lquadmath -lstdc++ -ldl Intel instruction sets utilizable by compiler: AVX2 Intel instruction sets utilizable by compiler: AVX2 BlasLapack: Unknown if this uses OpenMP (try export OMP_NUM_THREADS=<1-4> yourprogram -log_view) uses 4 byte integers MPI: Version: 3 mpiexec: /usr/bin/srun Implementation: mpich3 MPI C++ include paths: -I/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/include -I/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/include -I/opt/cray/pe/dsmml/0.2.2/dsmml//include -I/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/include MPI C++ libraries: -L/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib -L/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib -L/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib -L/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/lib64 -Wl,-rpath=/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib -Wl,-no-as-needed -Wl,--as-needed,-lsci_nvidia_mpi,--no-as-needed -Wl,--as-needed,-lsci_nvidia,--no-as-needed -Wl,--as-needed,-lmpi_nvidia,--no-as-needed -Wl,--as-needed,-ldsmml,--no-as-needed -ldarshan -lz -ldl -lxpmem MPICH_NUMVERSION: 30400002 cuda: Version: 11.4 Includes: -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include Library: -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64 -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/lib64/stubs -lcufft -lcublas -lcusparse -lcusolver -lcurand -lcudart -lcuda CUDA SM 80 CUDA underlying compiler: CUDA_CXX=gcc CUDA underlying compiler flags: CUDA_CXXFLAGS= CUDA underlying linker libraries: CUDA_CXXLIBS= X: Library: -lX11 pthread: zlib: Version: 1.2.11 cmake: Version: 3.22.0 /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/cmake hypre: Version: 2.23.0 Includes: -I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include Library: -Wl,-rpath,/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -L/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -lHYPRE regex: p4est: Includes: -I/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/include Library: -Wl,-rpath,/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -L/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9/lib -lp4est -lsc sowing: Version: 1.1.26 /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-cuda/bin/bfort Language used to compile PETSc: C PETSc: PETSC_ARCH: arch-perlmutter-opt-nvidia-cuda PETSC_DIR: /global/homes/m/madams/petsc Prefix: /global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9 Scalar type: real Precision: double Support for __float128 Integer size: 4 bytes Single library: yes Shared libraries: yes Memory alignment from malloc(): 16 bytes Using GNU make: /usr/bin/gmake xxx=========================================================================xxx Configure stage complete. Now build PETSc libraries with: make PETSC_DIR=/global/homes/m/madams/petsc PETSC_ARCH=arch-perlmutter-opt-nvidia-cuda all xxx=========================================================================xxx ================================================================================ Finishing configure run at Thu, 09 Dec 2021 07:58:19 -0800 ================================================================================