Executing: uname -s stdout: Darwin ================================================================================ ================================================================================ Starting configure run at Wed, 08 Dec 2021 08:26:46 -0500 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-mpi-dir=/usr/local/Cellar/open-mpi/4.1.1_2 --with-fc=0 COPTFLAGS="-g -O" CXXOPTFLAGS="-g -O" --with-fortran-bindings=0 LIBS=-L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib --download-kokkos=1 --download-kokkos-kernels=1 --with-kokkos-kernels-tpl=0 --with-make-np=8 --with-zlib=1 -with-cuda=0 --with-x=0 --with-debugging=1 PETSC_DIR=/Users/markadams/Codes/petsc2 PETSC_ARCH=arch-macosx-gnu-kokkos-g Working directory: /Users/markadams/Codes/petsc2 Machine platform: uname_result(system='Darwin', node='MarksMac-302.local', release='21.1.0', version='Darwin Kernel Version 21.1.0: Wed Oct 13 17:33:23 PDT 2021; root:xnu-8019.41.5~1/RELEASE_X86_64', machine='x86_64', processor='i386') Python version: 3.8.5 (default, Sep 4 2020, 02:22:02) [Clang 10.0.0 ] ================================================================================ Environmental variables GIT_PS1_SHOWDIRTYSTATE=1 PIP_DOWNLOAD_CACHE=/Users/markadams/.pip/cache TERM_PROGRAM=iTerm.app TERM=xterm-256color SHELL=/bin/bash CH_TIMER=FALSE PETSC_ARCH=arch-macosx-gnu-g TMPDIR=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/ CONDA_SHLVL=2 CONDA_PROMPT_MODIFIER=(conda_env) TERM_PROGRAM_VERSION=3.4.6 TERM_SESSION_ID=w0t0p0:938F0E9B-0158-4613-A7D2-CD29B26875DC SVN_EDITOR=vi USER=markadams COMMAND_MODE=unix2003 CONDA_EXE=/usr/local/Caskroom/miniconda/base/bin/conda XP_LICENSE_INTERFACE=en0 CH_TIMER_SAMPLE=60000 CPATH=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.ZQIRksRxXR/Listeners __CF_USER_TEXT_ENCODING=0x0:0:0 _CE_CONDA= CONDA_PREFIX_1=/usr/local/Caskroom/miniconda/base PATH=/Users/markadams/opt/miniconda2/envs/conda_env/bin:/usr/local/Caskroom/miniconda/base/condabin:/Library/Frameworks/Python.framework/Versions/3.9/bin:/usr/local/opt/llvm/bin:/opt/anaconda2/bin:/usr/local/opt/texinfo/bin:/usr/local/bin:/usr/local/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/Apple/usr/bin LaunchInstanceID=3F21C051-D49A-4767-BCDB-5B38013F0662 CONDA_PREFIX=/Users/markadams/opt/miniconda2/envs/conda_env DATAFILESPATH=/Users/markadams/matrices __CFBundleIdentifier=com.googlecode.iterm2 PWD=/Users/markadams/Codes/petsc2 DBUS_LAUNCHD_SESSION_BUS_SOCKET=/private/tmp/com.apple.launchd.ZDOKfaWA53/unix_domain_listener LANG=en_US.UTF-8 ITERM_PROFILE=Default MACHINE=darwin XPC_FLAGS=0x0 _CE_M= XPC_SERVICE_NAME=0 CH_OUTPUT_INTERVAL=1000 SHLVL=1 HOME=/Users/markadams COLORFGBG=0;15 LC_TERMINAL_VERSION=3.4.6 SLEPC_DIR=/Users/markadams/Codes/slepc ITERM_SESSION_ID=w0t0p0:938F0E9B-0158-4613-A7D2-CD29B26875DC CONDA_PYTHON_EXE=/usr/local/Caskroom/miniconda/base/bin/python LOGNAME=markadams GIT_PS1_SHOWUPSTREAM=auto CVS_RSH=ssh CONDA_DEFAULT_ENV=conda_env OMP_NUM_THREADS=1 ARCHFLAGS=-arch x86_64 LC_TERMINAL=iTerm2 PETSC_DIR=/Users/markadams/Codes/petsc SECURITYSESSIONID=186a3 COLORTERM=truecolor OLDPWD=/Users/markadams/Codes/petsc _=../arch-macosx-gnu-kokkos-g.py Files in path provided by default path /Users/markadams/opt/miniconda2/envs/conda_env/bin: lzmainfo unzstd tabs toe tificc c_rehash xzdec tiffsplit fax2tiff linkicc infotocap 2to3 python3 wish8.6 png-fix-itxt zstdless captoinfo tiffdump easy_install pydoc python unxz tiff2bw freetype-config pip3 cjpeg jpegtran libpng16-config xzegrep pngfix tiffcmp tset tiff2pdf wish unlzma lz4cat reset xzfgrep libpng-config lz4 wheel tclsh8.6 python3.8 djpeg tiffcrop zstdgrep idle3 xz register-python-argcomplete tiffdither clear python3-config f2py tiffset tclsh pip f2py3.8 ncursesw6-config tic tiff2ps lzless tiffinfo python-argcomplete-check-easy-install-script sqlite3 infocmp xzless pal2rgb zstd lzcmp xzcat transicc wrjpgcom lz4c zstdcat psicc xzcmp lzcat jpgicc pydoc3.8 unlz4 zstdmt lzdiff python-argcomplete-tcsh lzmadec fax2ps idle3.8 lzgrep tiffcp lzmore tput sqlite3_analyzer f2py3 openssl lzfgrep python3.8-config xzmore tiffmedian xzgrep pydoc3 lzma 2to3-3.8 rdjpgcom lzegrep raw2tiff ppm2tiff xzdiff tiff2rgba activate-global-python-argcomplete /usr/local/Caskroom/miniconda/base/condabin: conda /Library/Frameworks/Python.framework/Versions/3.9/bin: pip3.9 2to3 python3 pip3 easy_install-3.9 idle3 python3.9-config python3.9 python3-config pydoc3.9 idle3.9 2to3-3.9 pydoc3 Warning accessing /usr/local/opt/llvm/bin gives errors: [Errno 2] No such file or directory: '/usr/local/opt/llvm/bin' Warning accessing /opt/anaconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/anaconda2/bin' Warning accessing /usr/local/opt/texinfo/bin gives errors: [Errno 2] No such file or directory: '/usr/local/opt/texinfo/bin' /usr/local/bin: lzmainfo gcc-ranlib-11 unzstd ccmake pip3.9 msgconv event_rpcgen.py pkg-config hwloc-compress-dir gdc msggrep libtool aclocal pcre2grep autopoint mpif90 hwloc-bind pzstd git-gui automake-1.14 x86_64-apple-darwin21-gcc-tmp lto-dump-11 xzdec font2c wheel3 rst2xetex.py msgcomm gdb git-receive-pack fc-list mpirun gs-noX11 autoscan callgrind_control cxpm orted gfortran 2to3 python3 wish8.6 ompi_info png-fix-itxt rst2latex.py xterm cmake zstdless gitk gcov-dump-11 fc-pattern c++-11 gfortran-11 aclocal-1.14 conda unxz hwloc-distrib cg_merge freetype-config pip3 pcre2test fc-validate teacup autom4te aggregate_profile.pl lstopo libpng16-config ompi-server xzegrep VBoxManage pngfix vagrant cpp-11 fc-query wish unlzma VBoxHeadless hwloc-calc xzfgrep vgdb hwloc-info libpng-config koi8rxterm profile2mat.pl gdbm_dump gcov-tool-11 brew msgen tclsh8.6 x86_64-apple-darwin21-gcc-ar-11 autoupdate gs-X11 rst2odt_prepstyles.py orte-clean git-upload-archive gs-X11-Yosemite msgmerge gs-noX11-Yosemite libtoolize mpif77 zstdgrep idle3 cg_diff x86_64-apple-darwin21-gcc-nm-11 python3.9-config envsubst xz VirtualBox x86_64-apple-darwin21-c++-11 python3.9 vboxwebsrv msginit VBoxDTrace cg_annotate hwloc-ls mpicc pelican-quickstart python3-config f2py git-citool tclsh pip orterun gcc-11 SophosUpdate hwloc-patch lzless valgrind-listener kdiff3 f2py3.7 vbox-img git-gui--askpass x86_64-apple-darwin21-gfortran-11 gettext gcc-ar-11 gettext.sh ctest xzless g++-11 zstd VBoxBalloonCtrl msgcmp opal_wrapper lzcmp pcre2-config orte-info pydoc3.9 pygmentize xzcat autoreconf VBoxAutostart sweep mpicxx autoconf orte-server msgcat zstdcat autoheader hwloc-gather-cpuid recode-sr-latin xzcmp lzcat gcc-nm-11 ompi-clean hwloc-diff gdc-11 lstopo-no-graphics fc-cache tclselect hwloc-ps zstdmt fc-cat callgrind_annotate git-cvsserver lzdiff idle3.9 valgrind-di-server gdbmtool msgexec rst2xml.py pelican-themes ngettext rst2odt.py git-shell texdistmgr ifnames lzmadec x86_64-apple-darwin21-gcc-11 fc-match lzgrep msgunfmt lzmore git-upload-pack mpiexec resize pelican gcov-11 f2py3 msgfilter wftopfa lzfgrep rst2pseudoxml.py fc-conflist xzmore x86_64-apple-darwin21-g++-11 2to3-3.9 mpic++ xzgrep mpifort rst2s5.py pydoc3 valgrind rst2html.py lzma rst2man.py gdbm_load ortecc x86_64-apple-darwin21-gcc-ranlib-11 automake lzegrep git cpack msgfmt rstpep2html.py xzdiff msgattrib xgettext hwloc-annotate uxterm .keepme ms_print x86_64-apple-darwin21-gdc-11 fc-scan gettextize pelican-import VBoxVRDP msguniq /usr/local/bin: lzmainfo gcc-ranlib-11 unzstd ccmake pip3.9 msgconv event_rpcgen.py pkg-config hwloc-compress-dir gdc msggrep libtool aclocal pcre2grep autopoint mpif90 hwloc-bind pzstd git-gui automake-1.14 x86_64-apple-darwin21-gcc-tmp lto-dump-11 xzdec font2c wheel3 rst2xetex.py msgcomm gdb git-receive-pack fc-list mpirun gs-noX11 autoscan callgrind_control cxpm orted gfortran 2to3 python3 wish8.6 ompi_info png-fix-itxt rst2latex.py xterm cmake zstdless gitk gcov-dump-11 fc-pattern c++-11 gfortran-11 aclocal-1.14 conda unxz hwloc-distrib cg_merge freetype-config pip3 pcre2test fc-validate teacup autom4te aggregate_profile.pl lstopo libpng16-config ompi-server xzegrep VBoxManage pngfix vagrant cpp-11 fc-query wish unlzma VBoxHeadless hwloc-calc xzfgrep vgdb hwloc-info libpng-config koi8rxterm profile2mat.pl gdbm_dump gcov-tool-11 brew msgen tclsh8.6 x86_64-apple-darwin21-gcc-ar-11 autoupdate gs-X11 rst2odt_prepstyles.py orte-clean git-upload-archive gs-X11-Yosemite msgmerge gs-noX11-Yosemite libtoolize mpif77 zstdgrep idle3 cg_diff x86_64-apple-darwin21-gcc-nm-11 python3.9-config envsubst xz VirtualBox x86_64-apple-darwin21-c++-11 python3.9 vboxwebsrv msginit VBoxDTrace cg_annotate hwloc-ls mpicc pelican-quickstart python3-config f2py git-citool tclsh pip orterun gcc-11 SophosUpdate hwloc-patch lzless valgrind-listener kdiff3 f2py3.7 vbox-img git-gui--askpass x86_64-apple-darwin21-gfortran-11 gettext gcc-ar-11 gettext.sh ctest xzless g++-11 zstd VBoxBalloonCtrl msgcmp opal_wrapper lzcmp pcre2-config orte-info pydoc3.9 pygmentize xzcat autoreconf VBoxAutostart sweep mpicxx autoconf orte-server msgcat zstdcat autoheader hwloc-gather-cpuid recode-sr-latin xzcmp lzcat gcc-nm-11 ompi-clean hwloc-diff gdc-11 lstopo-no-graphics fc-cache tclselect hwloc-ps zstdmt fc-cat callgrind_annotate git-cvsserver lzdiff idle3.9 valgrind-di-server gdbmtool msgexec rst2xml.py pelican-themes ngettext rst2odt.py git-shell texdistmgr ifnames lzmadec x86_64-apple-darwin21-gcc-11 fc-match lzgrep msgunfmt lzmore git-upload-pack mpiexec resize pelican gcov-11 f2py3 msgfilter wftopfa lzfgrep rst2pseudoxml.py fc-conflist xzmore x86_64-apple-darwin21-g++-11 2to3-3.9 mpic++ xzgrep mpifort rst2s5.py pydoc3 valgrind rst2html.py lzma rst2man.py gdbm_load ortecc x86_64-apple-darwin21-gcc-ranlib-11 automake lzegrep git cpack msgfmt rstpep2html.py xzdiff msgattrib xgettext hwloc-annotate uxterm .keepme ms_print x86_64-apple-darwin21-gdc-11 fc-scan gettextize pelican-import VBoxVRDP msguniq /usr/local/bin: lzmainfo gcc-ranlib-11 unzstd ccmake pip3.9 msgconv event_rpcgen.py pkg-config hwloc-compress-dir gdc msggrep libtool aclocal pcre2grep autopoint mpif90 hwloc-bind pzstd git-gui automake-1.14 x86_64-apple-darwin21-gcc-tmp lto-dump-11 xzdec font2c wheel3 rst2xetex.py msgcomm gdb git-receive-pack fc-list mpirun gs-noX11 autoscan callgrind_control cxpm orted gfortran 2to3 python3 wish8.6 ompi_info png-fix-itxt rst2latex.py xterm cmake zstdless gitk gcov-dump-11 fc-pattern c++-11 gfortran-11 aclocal-1.14 conda unxz hwloc-distrib cg_merge freetype-config pip3 pcre2test fc-validate teacup autom4te aggregate_profile.pl lstopo libpng16-config ompi-server xzegrep VBoxManage pngfix vagrant cpp-11 fc-query wish unlzma VBoxHeadless hwloc-calc xzfgrep vgdb hwloc-info libpng-config koi8rxterm profile2mat.pl gdbm_dump gcov-tool-11 brew msgen tclsh8.6 x86_64-apple-darwin21-gcc-ar-11 autoupdate gs-X11 rst2odt_prepstyles.py orte-clean git-upload-archive gs-X11-Yosemite msgmerge gs-noX11-Yosemite libtoolize mpif77 zstdgrep idle3 cg_diff x86_64-apple-darwin21-gcc-nm-11 python3.9-config envsubst xz VirtualBox x86_64-apple-darwin21-c++-11 python3.9 vboxwebsrv msginit VBoxDTrace cg_annotate hwloc-ls mpicc pelican-quickstart python3-config f2py git-citool tclsh pip orterun gcc-11 SophosUpdate hwloc-patch lzless valgrind-listener kdiff3 f2py3.7 vbox-img git-gui--askpass x86_64-apple-darwin21-gfortran-11 gettext gcc-ar-11 gettext.sh ctest xzless g++-11 zstd VBoxBalloonCtrl msgcmp opal_wrapper lzcmp pcre2-config orte-info pydoc3.9 pygmentize xzcat autoreconf VBoxAutostart sweep mpicxx autoconf orte-server msgcat zstdcat autoheader hwloc-gather-cpuid recode-sr-latin xzcmp lzcat gcc-nm-11 ompi-clean hwloc-diff gdc-11 lstopo-no-graphics fc-cache tclselect hwloc-ps zstdmt fc-cat callgrind_annotate git-cvsserver lzdiff idle3.9 valgrind-di-server gdbmtool msgexec rst2xml.py pelican-themes ngettext rst2odt.py git-shell texdistmgr ifnames lzmadec x86_64-apple-darwin21-gcc-11 fc-match lzgrep msgunfmt lzmore git-upload-pack mpiexec resize pelican gcov-11 f2py3 msgfilter wftopfa lzfgrep rst2pseudoxml.py fc-conflist xzmore x86_64-apple-darwin21-g++-11 2to3-3.9 mpic++ xzgrep mpifort rst2s5.py pydoc3 valgrind rst2html.py lzma rst2man.py gdbm_load ortecc x86_64-apple-darwin21-gcc-ranlib-11 automake lzegrep git cpack msgfmt rstpep2html.py xzdiff msgattrib xgettext hwloc-annotate uxterm .keepme ms_print x86_64-apple-darwin21-gdc-11 fc-scan gettextize pelican-import VBoxVRDP msguniq /usr/bin: ptargrep5.30 uux cpan loads.d htmltree5.30 write lwp-mirror5.30 indent bzip2recover hdiutil top javah tee tidy_changelog binhex5.18.pl xip yapp wsimport bzfgrep qlmanage snmptranslate split chsh stty.pl xml2man pl2pm5.30 man lpoptions tabs smtpd2.7.py rview lsvfs zgrep dbiprof zmore cpanp-run-perl pod2usage5.30 gcov package-stash-conflicts5.30 dbiprof5.30 vim idle2.7 mandoc_soelim macerror5.18 xjc lwp-request5.18 bzmore dyld_info 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libnetcfg cpan5.30 c++filt avbdiagnose nice perlivp5.18 xcscontrol calendar locale strip symbolscache tfmtodit trace tops lprm tiffutil du diff3 cupstestppd json_pp5.30 sw_vers fs_usage host jarsigner app-sso grolbp nscurl logger caffeinate pod2html5.30 say net-snmp-create-v3-user lwp-download5.18 plutil python3 avbutil xcode-select libnetcfg5.30 powermetrics moose-outdated c2ph net-server cvmkdir ldapmodify iofile.d join SafeEjectGPU snmpdelta ssh-keyscan renice xxd clangd scandeps.pl nettop ppdmerge snmpconf xsltproc osascript troff iotop mmroff lex encguess ctf_insert csplit splain5.30 iconv captoinfo snmpinform lsbom pbcopy sort xpath snmpdf whoami sc_usage jot ocspcheck mkbom groffer ldapurl json_xs pkgbuild yamlpp-events cpuwalk.d cvmkfile update_dyld_shared_cache easy_install pydoc ldapmodrdn systemextensionsctl file db_printlog sourcekit-lsp python debinhex5.30.pl hash bc fontrestore mg python2 sfltool less pod2latex bunzip2 pythonw touch rmic dispqlen.d db_archive refer getopt 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ptargrep jar h2ph readlink opensnoop rake rvim jcmd dmc vimtutor perldoc5.30 xgettext5.30.pl from prove newproc.d gencat mdutil znew podchecker mcxrefresh colrm dbilogstrip pagestuff crlrefresh headerdoc2html lwp-dump5.18 tbl jrunscript find2perl filtercalltree afhash sandbox-exec snmpvacm stapler codecctl fwkpfv sftp wc jps rsync osacompile yamlpp-load5.30 hdxml2manxml gzcat dbiproxy5.18 delv thermal pico podselect5.18 IOMFB_FDR_Loader pydoc2.7 shasum comm resolveLinks dbicadmin5.30 lpq java bundle gzip yamlpp-events5.30 zipcloak git-upload-archive xml2-config encode_keychange traptoemail gcc smbutil diff ri pythonw2.7 agvtool cksum indxbib segedit zipnote ptar printf soelim AssetCacheTetheratorUtil column ldapexop ippfind syscallbysysc.d groups dwarfdump ppdc rs spfd config_data slogin latency lsm h2ph5.30 xar db_codegen dns-sd tab2space avconvert xsubpp5.30 jhsdb unzipsfx treereg parl5.30 csreq whatis gperf iconutil zipsplit lwp-dump pathopens.d tail whois nsupdate crc32 ldapdelete 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asa iptab format-sql5.18 swiftc nfsstat eyapp5.30 uupick ipcs pod2readme5.18 pluginkit as net-server5.18 fold gnumake perl5.18 log tmutil checknr certtool python2.7 vmmap shasum5.18 h2xs csrutil shar ldappasswd lkbib ResMerger bitesize.d db_checkpoint funzip power_report.sh iosnoop atsutil osalang dirname pod2man enc2xs moo-outdated iopending infokey ncal chflags fg rwbypid.d jmap dscl leaks splain5.18 nbdst mnthome jshell dsexport mdimport parldyn id procsystime cd quota uuto fuser dsimport git-shell ldapsearch command snmp-bridge-mib egrep notifyutil cc dsmemberutil podselect grn psed whereis tccutil a2p find jstat zcat ip2cc5.18 unifdefall jlink enc2xs5.30 nroff pridist.d size timesyncanalyse uttype uustat snmpwalk llvm-g++ scp instmodsh5.18 tnameserv true afinfo hidutil ldapadd pwpolicy profiles yacc kswitch xcodebuild tkpp5.30 test-yaml5.30 jobs c89 sudo update_mcdp29xx bioutil tmdiagnose plockstat xgettext5.18.pl serialver afida pgrep yes lessecho sdiff afscexpand treereg5.18 spfquery5.30 cpan5.18 db_deadlock ldapcompare unexpand prove5.30 perlivp5.30 git-upload-pack ssh-copy-id grolj4 fixproc debinhex.pl lorder pod2html5.18 ranlib javadoc tput fgrep par.pl json_pp5.18 sigdist.d ppdhtml libnetcfg5.18 auval erb dappprof openssl yamlpp-load drutil jinfo lwp-download5.30 splain pmset xmlcatalog zcmp rwsnoop jstatd lpr layerutil snmptest mib2c-update grog creatbyproc.d pstruct fdesetup flex hostinfo jcontrol lpstat SetFile pod2html tar rdoc uptime s2p pidpersec.d xpath5.18 schemagen avmediainfo corelist5.30 iptab5.30 cvcp false zegrep memory_pressure pp5.30 uncompress lwp-request ncurses5.4-config sampleproc db_recover nmedit filebyproc.d bison tclsh8.5 jdeps productbuild zipinfo diffstat login db_dump smtpd.py cpuctl cpu_profiler.d which bundler iopattern finger mig sntp klist open GetFileInfo kmutil localedef ruby stringdups htmltree ptargrep5.18 git tr lwp-mirror5.18 htmltree5.18 banner leave jconsole paste moo-outdated5.18 bzip2 pod2usage5.18 uucp passwd dbiprof5.18 package-stash-conflicts5.18 macerror5.30 uuidgen pl2pm5.18 install_name_tool cmpdylib makeinfo zfgrep aea snfsdefrag zipdetails look findrule5.18 col dscacheutil syscapturediags ptar5.18 lwp-request5.30 zforce lwp-mirror malloc_history cpio nohup kcc ulimit rails bspatch hotspot.d cvaffinity gatherheaderdoc ppdi pcap-config jpackage avmetareadwrite gen_bridge_metadata gem spfd5.30 opendiff crc325.30 h2xs5.18 talk expect jimage lockstat dapptrace install-info xattr w gunzip /bin: cat echo launchctl df pwd test csh wait4path unlink sleep stty date ed expr pax bash kill sh ps link tcsh dd mkdir ksh hostname dash rmdir mv ln ls cp sync zsh chmod rm [ /usr/sbin: dsconfigad htdbm netbiosd postlock systemsoundserverd dseditgroup avbdeviced rpcinfo BootCacheControl weakpass_edit periodic accton wfsctl postalias slapacl edquota sndiskmove pdisk amt lpadmin fdisk sysadminctl networksetup envvars ktutil setquota otctl dnctl mDNSResponder iRATBW.mlmodelc repquota cupsfilter checkgid uuconv sharing vifs ac racoon dsenableroot xsanctl kdcsetup aslmanager screencapture htdigest chat DevToolsSecurity applecamerad logresolve cvdbset KernelEventAgent gpt scutil ioreg ab traceroute6 pwd_mkdb sysctl appsleepd sshd mDNSResponderHelper authserver appleh13camerad postmulti lsof pkgutil slapindex sc_auth ioclasscount uucico firmwarepasswd rarpd tsig-keygen kadmin.local syslogd taskpolicy BTLEServerAgent filecoordinationd dot_clean PasswordService systemsetup zdump snmpd ndp coreaudiod rpcbind praudit BTLEServer usernoted postkick postcat netstat lpc slapadd krbservicesetup slapconfig rtadvd httxt2dbm distnoted mtree cupsdisable lpmove disktool purge rpc.statd cupsctl DirectoryService notifyd klist_cdhashes dtrace kextcache cupsd dbmmanage languagesetup skywalkctl mkpassdb postconf createhomedir ocspd iostat cvdb sa rpc.lockd uuxqt mkfile softwareupdate unsetpassword zic nfs4mapid postsuper htpasswd rotatelogs universalaccessd audit httpd slapauth slappasswd localemanager asr cvupdatefs bless cvgather xscertadmin visudo uusched dsconfigldap smbdiagnose cfprefsd auditd uuchk cvfsck kextfind diskutil cvfsid sso_util vsdbutil sntpd ddns-confgen ioalloccount uasysdiagnose dev_mkdb hdik slapdn vpnd postqueue setkey tpctl repairHomePermissions spindump cupsreject traceroute quotaoff newsyslog postfix cvfsdb snmptrapd chroot arp cupsaccept nvram chown mkextunpack postlog installer pppd httpd-wrapper system_profiler fcgistarter bluetoothd slapschema kadmin spray cvversions kextlibs tcpdump xartutil securityd nlcontrol quotaon spctl vipw gssd slaptest automount scselect envvars-std graphicssession ckksctl lpinfo smbd serverinfo cvmkfs postmap postdrop cupsenable cron systemstats bnepd kextstat snquota cvlabel BlueTool sendmail systemkeychain kcditto slapcat ipconfig auditreduce cvadmin WirelessRadioManagerd apachectl htcacheclean /sbin: mount_hfs mount_apfs md5 fsck mount_udf quotacheck mount_cd9660 ping fsck_exfat mount_exfat fsck_udf shutdown route mount_webdav fsck_hfs nfsd reboot nfsiod fsck_cs fsck_apfs fstyp_msdos disklabel mount_lifs mount_msdos fsck_msdos ifconfig halt mount_9p mount_ntfs newfs_apfs umount fstyp kextunload mpioutil fstyp_ntfs emond mount_nfs newfs_udf mount_ftp pfctl mknod fstyp_udf dmesg mount fibreconfig fstyp_hfs newfs_hfs dynamic_pager launchd newfs_exfat apfs_unlockfv apfs_hfs_convert nologin mount_afp mount_smbfs mount_tmpfs ping6 kextload mount_cddafs mount_fdesc newfs_msdos mount_acfs mount_devfs /Library/Apple/usr/bin: rvictl ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:1029) serialEvaluation: initial cxxDialectRanges ('c++03', 'c++17') serialEvaluation: child kokkos raised minimum cxx dialect version to c++14 serialEvaluation: new cxxDialectRanges ('c++14', 'c++17') child config.utilities.macosFirewall 0.000144 ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/lldb...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/lldb...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/lldb...not found Checking for program /usr/local/opt/llvm/bin/lldb...not found Checking for program /opt/anaconda2/bin/lldb...not found Checking for program /usr/local/opt/texinfo/bin/lldb...not found Checking for program /usr/local/bin/lldb...not found Checking for program /usr/local/bin/lldb...not found Checking for program /usr/local/bin/lldb...not found Checking for program /usr/bin/lldb...found Defined make macro "LLDB" to "/usr/bin/lldb" Defined "USE_DEBUGGER" to ""lldb"" Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/dsymutil...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/dsymutil...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/dsymutil...not found Checking for program /usr/local/opt/llvm/bin/dsymutil...not found Checking for program /opt/anaconda2/bin/dsymutil...not found Checking for program /usr/local/opt/texinfo/bin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...found Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Defined "DO_NOT_SWAP_CHILD_FOR_DEBUGGER" to "1" child config.utilities.debuggers 0.034454 ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 16 #define PETSC_VERSION_SUBMINOR 1 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.003876 ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.001094 ============================================================================================= TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/git...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/git...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/git...not found Checking for program /usr/local/opt/llvm/bin/git...not found Checking for program /opt/anaconda2/bin/git...not found Checking for program /usr/local/opt/texinfo/bin/git...not found Checking for program /usr/local/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.34.1 ============================================================================================= TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/hg...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/hg...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/hg...not found Checking for program /usr/local/opt/llvm/bin/hg...not found Checking for program /opt/anaconda2/bin/hg...not found Checking for program /usr/local/opt/texinfo/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /sbin/hg...not found Checking for program /Library/Apple/usr/bin/hg...not found Checking for program /Users/markadams/Codes/petsc2/lib/petsc/bin/win32fe/hg...not found child config.sourceControl 0.017448 ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.16.1-440-gf6c5847ddc Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: f6c5847ddcab52b7005653a6d961761c2091d40e Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2021-12-07 20:18:18 -0600 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: adams/fix_mat_ex5k Defined "VERSION_GIT" to ""v3.16.1-440-gf6c5847ddc"" Defined "VERSION_DATE_GIT" to ""2021-12-07 20:18:18 -0600"" Defined "VERSION_BRANCH_GIT" to ""adams/fix_mat_ex5k"" child PETSc.options.petscclone 0.394887 ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set ============================================================================================= Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-macosx-gnu-kokkos-g, ignoring environment: arch-macosx-gnu-g ============================================================================================= No previous hashfile found Setting hashfile: arch-macosx-gnu-kokkos-g/lib/petsc/conf/configure-hash Deleting configure hash file: arch-macosx-gnu-kokkos-g/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-macosx-gnu-kokkos-g/lib/petsc/conf/configure-hash child PETSc.options.arch 0.137984 ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:32) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:76) ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:69) ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:53) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:89) child PETSc.options.installDir 0.001898 ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000714 ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000618 ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:2101) ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:2117) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:2071) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:2092) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:604) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPFLAGS to Initialized HIPFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to Initialized SYCLPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:787) Locate a functional C compiler Checking for program /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpincc...not found Checking for program /Users/markadams/Codes/petsc2/lib/petsc/bin/win32fe/mpincc...not found Unable to find programs: ['mpincc'] in listing of the specific search path: ['/usr/local/Cellar/open-mpi/4.1.1_2/bin'] /usr/local/Cellar/open-mpi/4.1.1_2/bin: mpif90 mpirun orted ompi_info aggregate_profile.pl ompi-server profile2mat.pl orte-clean mpif77 mpicc orterun opal_wrapper orte-info mpicxx orte-server ompi-clean mpiexec mpic++ mpifort ortecc Checking for program /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpiicc...not found Checking for program /Users/markadams/Codes/petsc2/lib/petsc/bin/win32fe/mpiicc...not found Unable to find programs: ['mpiicc'] in listing of the specific search path: ['/usr/local/Cellar/open-mpi/4.1.1_2/bin'] /usr/local/Cellar/open-mpi/4.1.1_2/bin: mpif90 mpirun orted ompi_info aggregate_profile.pl ompi-server profile2mat.pl orte-clean mpif77 mpicc orterun opal_wrapper orte-info mpicxx orte-server ompi-clean mpiexec mpic++ mpifort ortecc Checking for program /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc...found Defined make macro "CC" to "/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc" ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation): ======== Checking running linked program ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc --version stdout: Apple clang version 13.0.0 (clang-1300.0.29.3) Target: x86_64-apple-darwin21.1.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:826) Locate a functional C preprocessor Checking for program /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc...found Defined make macro "CPP" to "/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:862) Locate a functional CUDA compiler Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/nvcc...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/nvcc...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/nvcc...not found Checking for program /usr/local/opt/llvm/bin/nvcc...not found Checking for program /opt/anaconda2/bin/nvcc...not found Checking for program /usr/local/opt/texinfo/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /Library/Apple/usr/bin/nvcc...not found Checking for program /Users/markadams/Codes/petsc2/lib/petsc/bin/win32fe/nvcc...not found Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /Users/markadams/Codes/petsc2/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs: ['nvcc'] in listing of the specific search path: ['/Developer/NVIDIA/CUDA-6.5/bin'] Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: [Errno 2] No such file or directory: '/Developer/NVIDIA/CUDA-6.5/bin' Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /Users/markadams/Codes/petsc2/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs: ['nvcc'] in listing of the specific search path: ['/usr/local/cuda/bin'] Warning accessing /usr/local/cuda/bin gives errors: [Errno 2] No such file or directory: '/usr/local/cuda/bin' ============================================================================================= TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:902) Locate a functional CUDA preprocessor ============================================================================================= TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:936) Locate a functional HIP compiler Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/hipcc...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/hipcc...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/hipcc...not found Checking for program /usr/local/opt/llvm/bin/hipcc...not found Checking for program /opt/anaconda2/bin/hipcc...not found Checking for program /usr/local/opt/texinfo/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /bin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /sbin/hipcc...not found Checking for program /Library/Apple/usr/bin/hipcc...not found Checking for program /Users/markadams/Codes/petsc2/lib/petsc/bin/win32fe/hipcc...not found Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/opt/rocm/bin/hipcc...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/opt/llvm/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/anaconda2/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/opt/texinfo/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /bin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /sbin/opt/rocm/bin/hipcc...not found Checking for program /Library/Apple/usr/bin/opt/rocm/bin/hipcc...not found Checking for program /Users/markadams/Codes/petsc2/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found ============================================================================================= TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:979) Locate a functional HIP preprocessor ============================================================================================= TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1010) Locate a functional SYCL compiler ============================================================================================= TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1036) Placeholder for now ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1127) Locate a functional Cxx compiler Checking for program /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpinc++...not found Checking for program /Users/markadams/Codes/petsc2/lib/petsc/bin/win32fe/mpinc++...not found Unable to find programs: ['mpinc++'] in listing of the specific search path: ['/usr/local/Cellar/open-mpi/4.1.1_2/bin'] /usr/local/Cellar/open-mpi/4.1.1_2/bin: mpif90 mpirun orted ompi_info aggregate_profile.pl ompi-server profile2mat.pl orte-clean mpif77 mpicc orterun opal_wrapper orte-info mpicxx orte-server ompi-clean mpiexec mpic++ mpifort ortecc Checking for program /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpinc++...not found Checking for program /Users/markadams/Codes/petsc2/lib/petsc/bin/win32fe/mpinc++...not found Unable to find programs: ['mpinc++'] in listing of the specific search path: ['/usr/local/Cellar/open-mpi/4.1.1_2/bin'] /usr/local/Cellar/open-mpi/4.1.1_2/bin: mpif90 mpirun orted ompi_info aggregate_profile.pl ompi-server profile2mat.pl orte-clean mpif77 mpicc orterun opal_wrapper orte-info mpicxx orte-server ompi-clean mpiexec mpic++ mpifort ortecc Checking for program /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpinc++...not found Checking for program /Users/markadams/Codes/petsc2/lib/petsc/bin/win32fe/mpinc++...not found Unable to find programs: ['mpinc++'] in listing of the specific search path: ['/usr/local/Cellar/open-mpi/4.1.1_2/bin'] /usr/local/Cellar/open-mpi/4.1.1_2/bin: mpif90 mpirun orted ompi_info aggregate_profile.pl ompi-server profile2mat.pl orte-clean mpif77 mpicc orterun opal_wrapper orte-info mpicxx orte-server ompi-clean mpiexec mpic++ mpifort ortecc Checking for program /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpiicpc...not found Checking for program /Users/markadams/Codes/petsc2/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs: ['mpiicpc'] in listing of the specific search path: ['/usr/local/Cellar/open-mpi/4.1.1_2/bin'] /usr/local/Cellar/open-mpi/4.1.1_2/bin: mpif90 mpirun orted ompi_info aggregate_profile.pl ompi-server profile2mat.pl orte-clean mpif77 mpicc orterun opal_wrapper orte-info mpicxx orte-server ompi-clean mpiexec mpic++ mpifort ortecc Checking for program /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpiicpc...not found Checking for program /Users/markadams/Codes/petsc2/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs: ['mpiicpc'] in listing of the specific search path: ['/usr/local/Cellar/open-mpi/4.1.1_2/bin'] /usr/local/Cellar/open-mpi/4.1.1_2/bin: mpif90 mpirun orted ompi_info aggregate_profile.pl ompi-server profile2mat.pl orte-clean mpif77 mpicc orterun opal_wrapper orte-info mpicxx orte-server ompi-clean mpiexec mpic++ mpifort ortecc Checking for program /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpiicpc...not found Checking for program /Users/markadams/Codes/petsc2/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs: ['mpiicpc'] in listing of the specific search path: ['/usr/local/Cellar/open-mpi/4.1.1_2/bin'] /usr/local/Cellar/open-mpi/4.1.1_2/bin: mpif90 mpirun orted ompi_info aggregate_profile.pl ompi-server profile2mat.pl orte-clean mpif77 mpicc orterun opal_wrapper orte-info mpicxx orte-server ompi-clean mpiexec mpic++ mpifort ortecc Checking for program /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx...found Defined make macro "CXX" to "/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx" ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation): ======== Checking running linked program ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx --version stdout: Apple clang version 13.0.0 (clang-1300.0.29.3) Target: x86_64-apple-darwin21.1.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin ============================================================================================= TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1168) Locate a functional Cxx preprocessor Checking for program /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx...found Defined make macro "CXXPP" to "/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1271) Locate a functional Fortran compiler ============================================================================================= TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1507) ============================================================================================= TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1606) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V Executing: ar -V Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/ar...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/ar...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/ar...not found Checking for program /usr/local/opt/llvm/bin/ar...not found Checking for program /opt/anaconda2/bin/ar...not found Checking for program /usr/local/opt/texinfo/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/ranlib...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/ranlib...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/ranlib...not found Checking for program /usr/local/opt/llvm/bin/ranlib...not found Checking for program /opt/anaconda2/bin/ranlib...not found Checking for program /usr/local/opt/texinfo/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/libconf1.a /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/libconf1.a ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c:6:26: warning: if statement has empty body [-Wempty-body] int b = foo(1); if (b); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c:6:26: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -lconf1 -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ============================================================================================= TESTING: checkArchiverRecipeArgfile from config.setCompilers(config/BuildSystem/config/setCompilers.py:1670) Checks if AR handles @ notation Executing: /usr/bin/ar cr checkRecipeArgfile.a @checkRecipeArgfile.args Possible ERROR while running archiver: exit code 1 stderr: ar: @checkRecipeArgfile.args: No such file or directory ============================================================================================= TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1752) Check that the linker can produce shared libraries Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking shared linker /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress', '-no_compact_unwind'] Checking for program /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc...found Defined make macro "LD_SHARED" to "/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc" Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -qversion Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -show stdout: clang -I/usr/local/Cellar/open-mpi/4.1.1_2/include -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.1_2/lib -lmpi Trying C compiler flag -PIC Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -PIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument '-PIC'; did you mean '-fPIC'? Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -PIC clang: error: unknown argument '-PIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejecting compiler flag -PIC due to nonzero status from link Rejected C compiler flag -PIC because it was not compatible with shared linker /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress', '-no_compact_unwind'] Trying C compiler flag -qPIC Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -qPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument '-qPIC'; did you mean '-fPIC'? Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -qPIC clang: error: unknown argument '-qPIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejecting compiler flag -qPIC due to nonzero status from link Rejected C compiler flag -qPIC because it was not compatible with shared linker /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress', '-no_compact_unwind'] Trying C compiler flag -KPIC Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -KPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument '-KPIC'; did you mean '-fPIC'? Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -KPIC clang: error: unknown argument '-KPIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejecting compiler flag -KPIC due to nonzero status from link Rejected C compiler flag -KPIC because it was not compatible with shared linker /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress', '-no_compact_unwind'] Trying C compiler flag -fPIC Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC Added C compiler flag -fPIC Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -dynamiclib -single_module -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid C linker flag -dynamiclib -single_module Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -undefined dynamic_lookup -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid C linker flag -undefined dynamic_lookup Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -multiply_defined suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid C linker flag -multiply_defined suppress Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -no_compact_unwind -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: clang: error: unknown argument: '-no_compact_unwind' Rejecting linker flag -no_compact_unwind due to nonzero status from link Linker output before filtering: clang: error: unknown argument: '-no_compact_unwind' : Linker output after filtering: clang: error: unknown argument: '-no_compact_unwind': ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib -L/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -lconftest Using shared linker /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc with flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] and library extension dylib Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS ============================================================================================= TESTING: checkLinkerMac from config.setCompilers(config/BuildSystem/config/setCompilers.py:1827) Tests some Apple Mac specific linker flags Defined "PETSC_USING_DARWIN" to "1" Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -Wl,-bind_at_load -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid C linker flag -Wl,-bind_at_load Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-bind_at_load -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid C linker flag -Wl,-multiply_defined,suppress Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid C linker flag -Wl,-multiply_defined -Wl,suppress Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid C linker flag -Wl,-commons,use_dylibs Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid C linker flag -Wl,-search_paths_first Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid C linker flag -Wl,-no_compact_unwind Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -Wl,-bind_at_load /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid Cxx linker flag -Wl,-bind_at_load Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-bind_at_load /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid Cxx linker flag -Wl,-multiply_defined,suppress Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid Cxx linker flag -Wl,-multiply_defined -Wl,suppress Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid Cxx linker flag -Wl,-commons,use_dylibs Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid Cxx linker flag -Wl,-search_paths_first Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid Cxx linker flag -Wl,-no_compact_unwind Executing: uname -s stdout: Darwin ============================================================================================= TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1450) Determine the PIC option for each compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -qversion Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -show stdout: clang++ -I/usr/local/Cellar/open-mpi/4.1.1_2/include -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.1_2/lib -lmpi Trying Cxx compiler flag -PIC for PIC code Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -PIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument '-PIC'; did you mean '-fPIC'? Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -PIC clang: error: unknown argument '-PIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejecting compiler flag -PIC due to nonzero status from link Rejected Cxx compiler flag -PIC because shared linker cannot handle it Trying Cxx compiler flag -qPIC for PIC code Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -qPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument '-qPIC'; did you mean '-fPIC'? Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -qPIC clang: error: unknown argument '-qPIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejecting compiler flag -qPIC due to nonzero status from link Rejected Cxx compiler flag -qPIC because shared linker cannot handle it Trying Cxx compiler flag -KPIC for PIC code Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -KPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument '-KPIC'; did you mean '-fPIC'? Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -KPIC clang: error: unknown argument '-KPIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejecting compiler flag -KPIC due to nonzero status from link Rejected Cxx compiler flag -KPIC because shared linker cannot handle it Trying Cxx compiler flag -fPIC for PIC code Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC Added Cxx compiler flag -fPIC ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Accepted Cxx compiler flag -fPIC for PIC code ============================================================================================= TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1866) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -V Trying C linker flag -Wl,-rpath, Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -Wl,-rpath,/Users/markadams/Codes/petsc2 -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid C linker flag -Wl,-rpath,/Users/markadams/Codes/petsc2 Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -Wl,-rpath,/Users/markadams/Codes/petsc2 -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid Cxx linker flag -Wl,-rpath,/Users/markadams/Codes/petsc2 ============================================================================================= TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1905) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Shared linking does not require an explicit libc reference ============================================================================================= TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1951) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Adding ['dl'] to LIBS Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking dynamic linker /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc using flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] Checking for program /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc" Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Valid C linker flag -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/libconftest.dylib", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Using dynamic linker /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc with flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] and library extension dylib ============================================================================================= TESTING: checkPragma from config.setCompilers(config/BuildSystem/config/setCompilers.py:1409) Check for all available applicable languages whether they complain (including warnings!) about potentially unknown pragmas Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC -Wunknown-pragmas /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wunknown-pragmas Added C compiler flag -Wunknown-pragmas ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC -Wunknown-pragmas /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #pragma GCC poison TEST int main() { ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -Wunknown-pragmas -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wunknown-pragmas Added Cxx compiler flag -Wunknown-pragmas ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -Wunknown-pragmas -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #pragma GCC poison TEST int main() { ; return 0; } ============================================================================================= TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:2000) Output module data as defines and substitutions Substituting "CC" with "/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib" Substituting "SHARED_LIBRARY_FLAG" with "-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress" child config.setCompilers 6.528664 ============================================================================================= TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.003024 ============================================================================================= TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:82) Get the default compiler flags Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc --version stdout: Apple clang version 13.0.0 (clang-1300.0.29.3) Target: x86_64-apple-darwin21.1.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin getCompilerVersion: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc Apple clang version 13.0.0 (clang-1300.0.29.3) Defined make macro "C_VERSION" to "Apple clang version 13.0.0 (clang-1300.0.29.3)" Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -show stdout: clang -I/usr/local/Cellar/open-mpi/4.1.1_2/include -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.1_2/lib -lmpi Defined make macro "MPICC_SHOW" to "clang -I/usr/local/Cellar/open-mpi/4.1.1_2/include -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.1_2/lib -lmpi" Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc --help | head -n 500 Detected CLANG compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc --version stdout: Apple clang version 13.0.0 (clang-1300.0.29.3) Target: x86_64-apple-darwin21.1.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. Detected Darwin/MacOSX Catalina OS Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc --help | head -n 500 Detected CLANG compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc --help | head -n 500 Detected CLANG compiler Trying C compiler flag -Wall Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC -Wall /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC -Wall -Wwrite-strings /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector Added C compiler flag -fstack-protector Trying C compiler flag -fno-stack-check Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check Added C compiler flag -fno-stack-check Trying C compiler flag -mfp16-format=ieee Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -mfp16-format=ieee /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument: '-mfp16-format=ieee' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -mfp16-format=ieee clang: error: unknown argument: '-mfp16-format=ieee' PETSc Error: No output file produced Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -Qunused-arguments Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments Added C compiler flag -Qunused-arguments Trying C compiler flag -fvisibility=hidden Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden Added C compiler flag -fvisibility=hidden Trying C compiler flag -g -O Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O Added C compiler flag -g -O Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx --version stdout: Apple clang version 13.0.0 (clang-1300.0.29.3) Target: x86_64-apple-darwin21.1.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin getCompilerVersion: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx Apple clang version 13.0.0 (clang-1300.0.29.3) Defined make macro "Cxx_VERSION" to "Apple clang version 13.0.0 (clang-1300.0.29.3)" Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -show stdout: clang++ -I/usr/local/Cellar/open-mpi/4.1.1_2/include -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.1_2/lib -lmpi Defined make macro "MPICXX_SHOW" to "clang++ -I/usr/local/Cellar/open-mpi/4.1.1_2/include -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.1_2/lib -lmpi" Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx --help | head -n 500 Detected CLANG compiler Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx --version stdout: Apple clang version 13.0.0 (clang-1300.0.29.3) Target: x86_64-apple-darwin21.1.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin Detected Darwin/MacOSX Catalina OS Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx --help | head -n 500 Detected CLANG compiler Trying Cxx compiler flag -Wall Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -Wall -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -Wall -Wwrite-strings -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fno-stack-check Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check Added Cxx compiler flag -fno-stack-check Trying Cxx compiler flag -fvisibility=hidden Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden Added Cxx compiler flag -fvisibility=hidden Trying Cxx compiler flag -g -O Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O Added Cxx compiler flag -g -O ============================================================================================= TESTING: checkIntelHardwareSupport from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:173) Use Linux/MacOS commands to determine what operations the hardware supports Executing: lscpu Executing: sysctl -a stdout: user.cs_path: /usr/bin:/bin:/usr/sbin:/sbin user.bc_base_max: 99 user.bc_dim_max: 2048 user.bc_scale_max: 99 user.bc_string_max: 1000 user.coll_weights_max: 2 user.expr_nest_max: 32 user.line_max: 2048 user.re_dup_max: 255 user.posix2_version: 200112 user.posix2_c_bind: 0 user.posix2_c_dev: 0 user.posix2_char_term: 0 user.posix2_fort_dev: 0 user.posix2_fort_run: 0 user.posix2_localedef: 0 user.posix2_sw_dev: 0 user.posix2_upe: 0 user.stream_max: 20 user.tzname_max: 255 kern.ostype: Darwin kern.osrelease: 21.1.0 kern.osrevision: 199506 kern.version: Darwin Kernel Version 21.1.0: Wed Oct 13 17:33:23 PDT 2021; root:xnu-8019.41.5~1/RELEASE_X86_64 kern.maxvnodes: 263168 kern.maxproc: 4176 kern.maxfiles: 122880 kern.argmax: 1048576 kern.securelevel: 0 kern.hostname: MarksMac-302.local kern.hostid: 0 kern.clockrate: { hz = 100, tick = 10000, tickadj = 0, profhz = 100, stathz = 100 } kern.posix1version: 200112 kern.ngroups: 16 kern.job_control: 1 kern.saved_ids: 1 kern.boottime: { sec = 1638030770, usec = 528044 } Sat Nov 27 11:32:50 2021 kern.nisdomainname: kern.maxfilesperproc: 61440 kern.maxprocperuid: 2784 kern.ipc.maxsockbuf: 8388608 kern.ipc.sockbuf_waste_factor: 8 kern.ipc.somaxconn: 128 kern.ipc.nmbclusters: 131072 kern.ipc.soqlimitcompat: 1 kern.ipc.io_policy.log: 0 kern.ipc.io_policy.uuid: 1 kern.ipc.mb_drain_force: 0 kern.ipc.mb_drain_maxint: 0 kern.ipc.mb_memory_pressure_percentage: 80 kern.ipc.mb_normalized: 0 kern.ipc.mb_watchdog: 1 kern.ipc.mleak_sample_factor: 500 kern.ipc.extbkidlercvhiwat: 131072 kern.ipc.extbkidletime: 600 kern.ipc.maxextbkidleperproc: 1 kern.ipc.socket_debug: 0 kern.ipc.sodefunct_calls: 0 kern.ipc.sodefunctlog: 0 kern.ipc.sorecvmincopy: 16384 kern.ipc.soreserveheadroom: 1 kern.ipc.sorestrictrecv: 1 kern.ipc.sorestrictsend: 1 kern.ipc.sosendbigcl_ignore_capab: 0 kern.ipc.sosendjcl: 1 kern.ipc.sosendjcl_ignore_capab: 0 kern.ipc.sosendminchain: 16384 kern.ipc.sotcdb: 0 kern.ipc.sothrottlelog: 0 kern.ipc.njcl: 43688 kern.ipc.njclbytes: 16384 kern.ipc.sbmb_cnt: 181914 kern.ipc.sbmb_cnt_floor: 96108 kern.ipc.sbmb_cnt_peak: 406710 kern.ipc.sbmb_limreached: 0 kern.ipc.soqlencomp: 0 kern.ipc.throttle_best_effort: 0 kern.ipc.maxrecvmsgx: 100 kern.ipc.maxsendmsgx: 100 kern.ipc.missingpktinfo: 0 kern.usrstack: -1207091200 kern.netboot: 0 kern.sysv.shmall: 1024 kern.sysv.shmmax: 4194304 kern.sysv.shmmin: 1 kern.sysv.shmmni: 32 kern.sysv.shmseg: 8 kern.sysv.semmni: 87381 kern.sysv.semmns: 87381 kern.sysv.semmnu: 87381 kern.sysv.semmsl: 87381 kern.sysv.semume: 10 kern.aiomax: 90 kern.aioprocmax: 16 kern.aiothreads: 4 kern.corefile: /cores/core.%P kern.coredump: 1 kern.sugid_coredump: 0 kern.delayterm: 0 kern.shreg_private: 0 kern.posix.sem.max: 10000 kern.usrstack64: 140701921525760 kern.tfp.policy: 2 kern.procname: sysctl kern.speculative_reads_disabled: 0 kern.osversion: 21A559 kern.safeboot: 0 kern.rage_vnode: 0 kern.tty.ptmx_max: 511 kern.check_openevt: 0 kern.threadname: kern.entropy.health.repetition_count_test.failure_count: 0 kern.entropy.health.repetition_count_test.max_observation_count: 4 kern.entropy.health.repetition_count_test.reset_count: 654675885 kern.entropy.health.adaptive_proportion_test.failure_count: 0 kern.entropy.health.adaptive_proportion_test.max_observation_count: 13 kern.entropy.health.adaptive_proportion_test.reset_count: 1283670 kern.entropy.health.startup_done: 1 kern.entropy.filter.accepted_sample_count: 657221539 kern.entropy.filter.rejected_sample_count: 797748 kern.entropy.filter.total_sample_count: 658019287 kern.entropy.analysis.supported: 0 kern.eventhandler.debug: 0 kern.monotonic.task_thread_counting: 1 kern.monotonic.supported: 1 kern.monotonic.retrograde_updates: 80404 0 kern.monotonic.pmis: 80404 0 kern.kdbg.debug: 0 kern.kdbg.oldest_time: 0 kern.skywalk.netif.default_drop: 0 kern.skywalk.flowswitch.ip_reass: 2 kern.skywalk.flowswitch.rx_agg_tcp: 16384 kern.skywalk.flowswitch.rx_agg_tcp_host: 2 kern.skywalk.flowswitch.ipfm_frag_ttl: 60 kern.skywalk.flowswitch.ipfm_timeout_tcall_ival: 1 kern.skywalk.flowswitch.flow_route_expire: 600 kern.skywalk.flowswitch.en0.ipfm.frag_limit: 4224 kern.skywalk.flowswitch.en0.ipfm.frag_count: 0 kern.skywalk.flowswitch.en0.ipfm.queue_limit: 1024 kern.skywalk.flowswitch.en0.ipfm.queue_count: 0 kern.skywalk.flowswitch.awdl0.ipfm.frag_limit: 384 kern.skywalk.flowswitch.awdl0.ipfm.frag_count: 0 kern.skywalk.flowswitch.awdl0.ipfm.queue_limit: 192 kern.skywalk.flowswitch.awdl0.ipfm.queue_count: 0 kern.skywalk.flowswitch.en1.ipfm.frag_limit: 1024 kern.skywalk.flowswitch.en1.ipfm.frag_count: 0 kern.skywalk.flowswitch.en1.ipfm.queue_limit: 512 kern.skywalk.flowswitch.en1.ipfm.queue_count: 0 kern.skywalk.flowswitch.en2.ipfm.frag_limit: 1024 kern.skywalk.flowswitch.en2.ipfm.frag_count: 0 kern.skywalk.flowswitch.en2.ipfm.queue_limit: 512 kern.skywalk.flowswitch.en2.ipfm.queue_count: 0 kern.skywalk.flowswitch.en3.ipfm.frag_limit: 1024 kern.skywalk.flowswitch.en3.ipfm.frag_count: 0 kern.skywalk.flowswitch.en3.ipfm.queue_limit: 512 kern.skywalk.flowswitch.en3.ipfm.queue_count: 0 kern.skywalk.flowswitch.en4.ipfm.frag_limit: 1024 kern.skywalk.flowswitch.en4.ipfm.frag_count: 0 kern.skywalk.flowswitch.en4.ipfm.queue_limit: 512 kern.skywalk.flowswitch.en4.ipfm.queue_count: 0 kern.skywalk.ring_stat_enable: 0 kern.timer.longterm.qlen: 306 kern.timer.longterm.scan_interval: 100000 kern.timer.longterm.scan_limit: 100000 kern.timer.longterm.scan_pauses: 31331 kern.timer.longterm.threshold: 1000 kern.timer.coalescing_enabled: 1 kern.timer.deadline_tracking_bin_1: 2000000 kern.timer.deadline_tracking_bin_2: 5000000 kern.bridge.bootsessionuuid: 13934AE2-8E09-4781-A335-03888A88A15E kern.zleak.active: 0 kern.zleak.global_threshold: 68719476736 kern.zleak.max_zonemap_size: 137438953472 kern.zleak.zone_threshold: 8589934592 kern.dtrace.dof_maxsize: 524288 kern.dtrace.difo_maxsize: 262144 kern.dtrace.buffer_memory_inuse: 0 kern.dtrace.buffer_memory_maxsize: 5726623061 kern.dtrace.err_verbose: 0 kern.dtrace.dof_mode: 1 kern.dtrace.provide_private_probes: 1 kern.dtrace.ignore_fbt_blacklist: 0 kern.dtrace.global_maxsize: 16384 kern.bootsignature: kern.hibernatefile: /var/vm/sleepimage kern.hibernatemode: 0 kern.hibernatecount: 0 kern.hibernatehidready: 0 kern.hibernategraphicsready: 0 kern.hibernatelockscreenready: 0 kern.hibernatewakenotification: 0 kern.pmtimeout: 0 kern.wq_max_constrained_threads: 64 kern.wq_max_threads: 512 kern.wq_max_timer_interval_usecs: 50000 kern.wq_reduce_pool_window_usecs: 5000000 kern.wq_stalled_window_usecs: 200 kern.ds_supgroups_supported: 1 kern.iokittest: 0 kern.libmalloc_experiments: 0 kern.sugid_scripts: 0 kern.initproc_spawned: 1 kern.aotmode: 0 kern.waketime: { sec = 1638875936, usec = 619136 } Tue Dec 7 06:18:56 2021 kern.sleeptime: { sec = 1638875846, usec = 922452 } Tue Dec 7 06:17:26 2021 kern.affinity_sets_enabled: 1 kern.affinity_sets_mapping: 1 kern.apfsprebootuuid: 7E7FD2A7-831C-4662-9FC9-1F91986DCC5F kern.auxiliaryfilesetuuid: 5125847C-B1FA-C9D8-200D-47C2C0363F2F kern.bootargs: chunklist-security-epoch=0 -chunklist-no-rev2-dev kern.bootsessionuuid: C86CD41D-8764-48B8-A92E-12CC3B9B3CB5 kern.bootuuid: 7E7FD2A7-831C-4662-9FC9-1F91986DCC5F kern.direct_handoff: 1 kern.filesetuuid: AF65F317-0A82-76B4-37A0-214DC22BA431 kern.free_vnodes: 192435 kern.hv_disable: 0 kern.hv_support: 1 kern.hv_vmm_present: 0 kern.ikm_signature_failure_id: 0 kern.ikm_signature_failures: 0 kern.iossupportversion: 15.0 kern.ipc_portbt: 0 kern.ipc_voucher_trace_contents: 0 kern.kern_feature_overrides: 0 kern.kernelcacheuuid: AF65F317-0A82-76B4-37A0-214DC22BA431 kern.minimalboot: 0 kern.namecache_disabled: 0 kern.num_files: 7160 kern.num_recycledvnodes: 4620042 kern.num_static_scalable_counters: 44 kern.num_tasks: 4096 kern.num_taskthreads: 4096 kern.num_threads: 20480 kern.num_vnodes: 263168 kern.osproductversion: 12.0.1 kern.osproductversioncompat: 10.16 kern.osreleasetype: User kern.preheat_max_bytes: 1048576 kern.preheat_min_bytes: 32768 kern.sched: dualq kern.sched_allow_NO_SMT_threads: 1 kern.sched_enable_smt: 1 kern.sched_rt_avoid_cpu0: 1 kern.singleuser: 0 kern.slide: 1 kern.speculative_prefetch_max: 201326592 kern.speculative_prefetch_max_iosize: 524288 kern.stack_depth_max: 10200 kern.stack_size: 16384 kern.system_version_compat: 0 kern.systemfilesetuuid: 6A589D20-3010-B246-EABD-C94A94123B26 kern.thread_groups_supported: 0 kern.timer_coalesce_bg_ns_max: 100000000 kern.timer_coalesce_bg_scale: -5 kern.timer_coalesce_fp_ns_max: 1000000 kern.timer_coalesce_fp_scale: 3 kern.timer_coalesce_kt_ns_max: 1000000 kern.timer_coalesce_kt_scale: 3 kern.timer_coalesce_tier0_ns_max: 1000000 kern.timer_coalesce_tier0_scale: 3 kern.timer_coalesce_tier1_ns_max: 5000000 kern.timer_coalesce_tier1_scale: 2 kern.timer_coalesce_tier2_ns_max: 20000000 kern.timer_coalesce_tier2_scale: 1 kern.timer_coalesce_tier3_ns_max: 75000000 kern.timer_coalesce_tier3_scale: -2 kern.timer_coalesce_tier4_ns_max: 10000000000 kern.timer_coalesce_tier4_scale: -15 kern.timer_coalesce_tier5_ns_max: 10000000000 kern.timer_coalesce_tier5_scale: -15 kern.timer_coalesce_ts_ns_max: 1000000 kern.timer_coalesce_ts_scale: 3 kern.timer_resort_threshold_ns: 50000000 kern.trial_deployment_id: -1 kern.trial_experiment_id: kern.trial_treatment_id: kern.uuid: 19BD4E1B-0268-3EE0-BC66-91F035BC9429 kern.vfsnspace: 0 kern.vm_max_batch: 256 kern.vm_max_delayed_work_limit: 32 kern.vm_page_free_min: 3500 kern.vm_page_free_reserved: 904 kern.vm_page_free_target: 4000 kern.vm_page_speculative_percentage: 5 kern.vm_page_speculative_q_age_ms: 500 kern.jetsam_aging_policy: 2 kern.memorystatus_apps_idle_delay_time: 10 kern.memorystatus_level: 64 kern.memorystatus_sysprocs_idle_delay_time: 10 kern.memorystatus_purge_on_critical: 8 kern.memorystatus_purge_on_urgent: 5 kern.memorystatus_purge_on_warning: 2 kern.vm_pressure_level_transition_threshold: 30 kern.stackshot_estimate_adj: 40 kern.msgbuf: 131072 kern.task_exc_guard_default: 153 kern.ulock_adaptive_spin_usecs: 20 kern.wakereason: EC.RTC kern.aotmodebits: 0 kern.willshutdown: 0 kern.progressmeter: 325 kern.wake_abs_time: 757988001080238 kern.consoleoptions: 0 kern.secure_kernel: 0 kern.sleep_abs_time: 757987624695221 kern.progressmeterenable: 0 kern.useractive_abs_time: 851280687437599 kern.userinactive_abs_time: 851191319814513 kern.interrupt_timer_coalescing_enabled: 1 kern.timer_coalesce_idle_entry_hard_deadline_max: 5000000 kern.willuserspacereboot: 0 kern.flush_cache_on_write: 0 kern.nbuf: 16384 kern.maxnbuf: 16384 kern.prng.scheduled_reseed_count: 63166 kern.prng.scheduled_reseed_max_sample_count: 20451624 kern.prng.entropy_max_sample_count: 2303 kern.prng.pool_0.sample_count: 0 kern.prng.pool_0.drain_count: 63166 kern.prng.pool_0.max_sample_count: 2297 kern.prng.pool_1.sample_count: 257 kern.prng.pool_1.drain_count: 31583 kern.prng.pool_1.max_sample_count: 4160 kern.prng.pool_2.sample_count: 819 kern.prng.pool_2.drain_count: 15791 kern.prng.pool_2.max_sample_count: 7033 kern.prng.pool_3.sample_count: 2293 kern.prng.pool_3.drain_count: 7895 kern.prng.pool_3.max_sample_count: 11433 kern.prng.pool_4.sample_count: 4520 kern.prng.pool_4.drain_count: 3947 kern.prng.pool_4.max_sample_count: 18236 kern.prng.pool_5.sample_count: 11097 kern.prng.pool_5.drain_count: 1973 kern.prng.pool_5.max_sample_count: 28448 kern.prng.pool_6.sample_count: 19158 kern.prng.pool_6.drain_count: 986 kern.prng.pool_6.max_sample_count: 54552 kern.prng.pool_7.sample_count: 20537 kern.prng.pool_7.drain_count: 493 kern.prng.pool_7.max_sample_count: 102586 kern.prng.pool_8.sample_count: 54173 kern.prng.pool_8.drain_count: 246 kern.prng.pool_8.max_sample_count: 197690 kern.prng.pool_9.sample_count: 55529 kern.prng.pool_9.drain_count: 123 kern.prng.pool_9.max_sample_count: 360502 kern.prng.pool_10.sample_count: 206768 kern.prng.pool_10.drain_count: 61 kern.prng.pool_10.max_sample_count: 732284 kern.prng.pool_11.sample_count: 527365 kern.prng.pool_11.drain_count: 30 kern.prng.pool_11.max_sample_count: 1236716 kern.prng.pool_12.sample_count: 531723 kern.prng.pool_12.drain_count: 15 kern.prng.pool_12.max_sample_count: 1905415 kern.prng.pool_13.sample_count: 1867912 kern.prng.pool_13.drain_count: 7 kern.prng.pool_13.max_sample_count: 3238314 kern.prng.pool_14.sample_count: 4478249 kern.prng.pool_14.drain_count: 3 kern.prng.pool_14.max_sample_count: 5823569 kern.prng.pool_15.sample_count: 10309038 kern.prng.pool_15.drain_count: 1 kern.prng.pool_15.max_sample_count: 10309038 kern.prng.pool_16.sample_count: 20554099 kern.prng.pool_16.drain_count: 0 kern.prng.pool_16.max_sample_count: 20554099 kern.prng.pool_17.sample_count: 20552319 kern.prng.pool_17.drain_count: 0 kern.prng.pool_17.max_sample_count: 20552319 kern.prng.pool_18.sample_count: 20520704 kern.prng.pool_18.drain_count: 0 kern.prng.pool_18.max_sample_count: 20520704 kern.prng.pool_19.sample_count: 20581169 kern.prng.pool_19.drain_count: 0 kern.prng.pool_19.max_sample_count: 20581169 kern.prng.pool_20.sample_count: 20509918 kern.prng.pool_20.drain_count: 0 kern.prng.pool_20.max_sample_count: 20509918 kern.prng.pool_21.sample_count: 20567259 kern.prng.pool_21.drain_count: 0 kern.prng.pool_21.max_sample_count: 20567259 kern.prng.pool_22.sample_count: 20549670 kern.prng.pool_22.drain_count: 0 kern.prng.pool_22.max_sample_count: 20549670 kern.prng.pool_23.sample_count: 20544006 kern.prng.pool_23.drain_count: 0 kern.prng.pool_23.max_sample_count: 20544006 kern.prng.pool_24.sample_count: 20529219 kern.prng.pool_24.drain_count: 0 kern.prng.pool_24.max_sample_count: 20529219 kern.prng.pool_25.sample_count: 20469731 kern.prng.pool_25.drain_count: 0 kern.prng.pool_25.max_sample_count: 20469731 kern.prng.pool_26.sample_count: 20543081 kern.prng.pool_26.drain_count: 0 kern.prng.pool_26.max_sample_count: 20543081 kern.prng.pool_27.sample_count: 20558290 kern.prng.pool_27.drain_count: 0 kern.prng.pool_27.max_sample_count: 20558290 kern.prng.pool_28.sample_count: 20448483 kern.prng.pool_28.drain_count: 0 kern.prng.pool_28.max_sample_count: 20448483 kern.prng.pool_29.sample_count: 20480444 kern.prng.pool_29.drain_count: 0 kern.prng.pool_29.max_sample_count: 20480444 kern.prng.pool_30.sample_count: 20576914 kern.prng.pool_30.drain_count: 0 kern.prng.pool_30.max_sample_count: 20576914 kern.prng.pool_31.sample_count: 20608240 kern.prng.pool_31.drain_count: 0 kern.prng.pool_31.max_sample_count: 20608240 kern.monotonicclock: 0 kern.monotonicclock_usecs: 67584105775695 852065435521505 kern.monotonicclock_rate_usecs: 30 kern.monotoniclock_offset_usecs: 1571385910063995 kern.pthread_mutex_default_policy: 0 kern.hv.vmx_mitigations: 7 kern.hv.vmx_supported_mitigations: 47 kern.hv.clock.tsc_base: 41788308624 kern.hv.clock.tsc_clock_last: 0 kern.hv.clock.generation: 1 vm.loadavg: { 2.97 3.85 3.45 } vm.swapusage: total = 4096.00M used = 3309.50M free = 786.50M (encrypted) vm.cs_all_vnodes: 0 vm.cs_debug: 0 vm.cs_debug_fail_on_unsigned_code: 0 vm.cs_debug_unsigned_exec_failures: 0 vm.cs_debug_unsigned_mmap_failures: 0 vm.cs_enforcement_panic: 0 vm.cs_force_hard: 0 vm.cs_force_kill: 0 vm.cs_library_validation: 0 vm.cs_process_enforcement: 0 vm.cs_system_enforcement: 1 vm.add_wire_count_over_global_limit: 0 vm.add_wire_count_over_user_limit: 0 vm.compressor_available: 1 vm.compressor_bytes_used: 2317694032 vm.compressor_compressed_bytes: 147694811228 vm.compressor_eval_period_in_msecs: 250 vm.compressor_input_bytes: 400878170112 vm.compressor_is_active: 1 vm.compressor_min_csegs_per_major_compaction: 30 vm.compressor_mode: 4 vm.compressor_sample_max_in_msecs: 10000 vm.compressor_sample_min_in_msecs: 500 vm.compressor_segment_buffer_size: 262144 vm.compressor_swapout_target_age: 0 vm.compressor_swapouts_under_300s: 23245 vm.compressor_swapouts_under_30s: 73748 vm.compressor_swapouts_under_60s: 9539 vm.compressor_swapper_defrag_swapins: 36813 vm.compressor_swapper_reclaim_swapins: 303615 vm.compressor_swapper_swapout_fileq_throttled: 0 vm.compressor_swapper_swapout_fragmentation_detected: 239059 vm.compressor_swapper_swapout_free_count_low: 0 vm.compressor_swapper_swapout_thrashing_detected: 39678 vm.compressor_swapper_swapout_threshold_exceeded: 0 vm.compressor_thrashing_min_per_10msecs: 20 vm.compressor_thrashing_threshold_per_10msecs: 50 vm.compressor_timing_enabled: 0 vm.darkwake_mode: 0 vm.global_no_user_wire_amount: 4123168605 vm.global_user_wire_limit: 13056700579 vm.lz4_compressed_bytes: 0 vm.lz4_compression_failures: 0 vm.lz4_compressions: 0 vm.lz4_decompressed_bytes: 0 vm.lz4_decompressions: 0 vm.lz4_max_failure_run_length: -1 vm.lz4_max_failure_skips: 0 vm.lz4_max_preselects: 0 vm.lz4_profitable_bytes: 0 vm.lz4_run_continue_bytes: 0 vm.lz4_run_preselection_threshold: -1 vm.lz4_threshold: 2048 vm.lz4_wk_compression_delta: 0 vm.lz4_wk_compression_negative_delta: 0 vm.swapfileprefix: /System/Volumes/VM/swapfile vm.uc_decompressions: 0 vm.user_wire_limit: 13056700579 vm.vm_copy_src_large: 10792 vm.vm_copy_src_not_internal: 0 vm.vm_copy_src_not_symmetric: 0 vm.vm_page_background_count: 55250 vm.vm_page_background_exclude_external: 0 vm.vm_page_background_external_count: 10039 vm.vm_page_background_internal_count: 45211 vm.vm_page_background_mode: 1 vm.vm_page_background_promoted_count: 18583445 vm.vm_page_background_target: 50000 vm.vm_page_external_count: 1040410 vm.vm_page_filecache_min: 991542 vm.vm_page_xpmapped_min: 290180 vm.vm_pageout_considered_bq_external: 2760676 vm.vm_pageout_considered_bq_internal: 9874746 vm.vm_pageout_rejected_bq_external: 0 vm.vm_pageout_rejected_bq_internal: 0 vm.vm_ripe_target_age_in_secs: 172800 vm.wk_catime: 0 vm.wk_compressed_bytes_exclusive: 0 vm.wk_compressed_bytes_total: 0 vm.wk_compression_failures: 0 vm.wk_compressions: 0 vm.wk_compressions_exclusive: 0 vm.wk_datime: 0 vm.wk_decompressed_bytes: 0 vm.wk_decompressions: 0 vm.wk_mzv_compressions: 0 vm.wk_sv_compressions: 0 vm.wk_sv_decompressions: 0 vm.wkdm_reeval_threshold: 1536 vm.wkh_catime: 0 vm.wkh_compressions: 0 vm.wkh_datime: 0 vm.wkh_decompressions: 0 vm.wks_catime: 0 vm.wks_compressed_bytes: 0 vm.wks_compression_failures: 0 vm.wks_compressions: 0 vm.wks_datime: 0 vm.wks_decompressions: 0 vm.wks_sv_compressions: 0 vm.cs_blob_count: 1536 vm.cs_blob_count_peak: 1615 vm.cs_blob_size: 74542793 vm.cs_blob_size_max: 6488064 vm.cs_blob_size_peak: 76919312 vm.all_reusable_calls: 0 vm.all_reuse_calls: 0 vm.apple_protect_pager_cache_limit: 20 vm.apple_protect_pager_count: 5 vm.apple_protect_pager_count_mapped: 5 vm.can_reuse_failure: 9269 vm.can_reuse_success: 74822951 vm.copied_on_read: 33 vm.corpse_footprint_count: 95 vm.corpse_footprint_full: 0 vm.corpse_footprint_no_buf: 0 vm.corpse_footprint_size_avg: 231629 vm.corpse_footprint_size_max: 378972 vm.cs_executable_create_upl: 0 vm.cs_executable_wire: 0 vm.fault_resilient_media_abort1: 0 vm.fault_resilient_media_abort2: 0 vm.fault_resilient_media_initiate: 0 vm.fault_resilient_media_proceed: 0 vm.fault_resilient_media_release: 0 vm.fault_resilient_media_retry: 0 vm.free_shared: 0 vm.iopl_pages_tainted: 0 vm.kern_lpage_count: 116 vm.madvise_free_debug: 0 vm.map_enter_RLIMIT_AS_count: 0 vm.map_enter_RLIMIT_DATA_count: 0 vm.map_lookup_locked_copy_shadow_count: 2507920 vm.map_lookup_locked_copy_shadow_max: 47857664 vm.map_lookup_locked_copy_shadow_size: 5631155380224 vm.map_lookup_locked_copy_slowly_count: 0 vm.map_lookup_locked_copy_slowly_error: 0 vm.map_lookup_locked_copy_slowly_max: 0 vm.map_lookup_locked_copy_slowly_restart: 0 vm.map_lookup_locked_copy_slowly_size: 0 vm.map_lookup_locked_copy_strategically_count: 1312652 vm.map_lookup_locked_copy_strategically_error: 0 vm.map_lookup_locked_copy_strategically_max: 2097152 vm.map_lookup_locked_copy_strategically_restart: 0 vm.map_lookup_locked_copy_strategically_size: 2752830767104 vm.map_set_data_limit_count: 0 vm.map_set_size_limit_count: 0 vm.memory_pressure: 0 vm.page_busy_absent_skipped: 0 vm.page_cleaned_count: 0 vm.page_free_count: 40518 vm.page_free_wanted: 0 vm.page_pageable_external_count: 1035474 vm.page_pageable_internal_count: 1623279 vm.page_purgeable_count: 40140 vm.page_purgeable_wired_count: 2535 vm.page_reusable_count: 141642 vm.page_speculative_count: 3814 vm.pageout_freed_cleaned: 787485 vm.pageout_freed_external: 5157859 vm.pageout_freed_speculative: 61014436 vm.pageout_inactive_clean: 102873642 vm.pageout_inactive_dirty_external: 311199 vm.pageout_inactive_dirty_internal: 97877423 vm.pageout_inactive_used: 78026633 vm.pageout_speculative_clean: 61014436 vm.pages: 4016710 vm.pagesize: 4096 vm.partial_reusable_calls: 533825093 vm.partial_reuse_calls: 11592410 vm.prefault_nb_bailout: 0 vm.prefault_nb_pages: 0 vm.protect_privileged_from_untrusted: 1 vm.retired_pages_count: 0 vm.reusable_failure: 1705904 vm.reusable_nonwritable: 6459 vm.reusable_pages_shared: 4829633 vm.reusable_reclaimed: 0 vm.reusable_shared: 38769980 vm.reusable_success: 537482122 vm.reuse_failure: 0 vm.reuse_success: 2812946 vm.shared_region_count: 2 vm.shared_region_destroy_delay: 120 vm.shared_region_pager_copied: 0 vm.shared_region_pager_reclaimed: 225759 vm.shared_region_pager_slid: 242403 vm.shared_region_pager_slid_error: 0 vm.shared_region_peak: 2 vm.shared_region_persistence: 0 vm.shared_region_pivot: 0 vm.shared_region_trace_level: 1 vm.shared_region_unnest_logging: 1 vm.shared_region_version: 3 vm.upl_pages_tainted: 0 vm.vm_clump_promote_threshold: 4 vm.vm_create_upl_extra_cow: 4 vm.vm_create_upl_extra_cow_pages: 13 vm.vm_create_upl_lookup_failure_copy: 0 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vfs.generic.nfs.server.nfsd_tcp_connections: 0 vfs.generic.nfs.server.nfsd_sock_idle_timeout: 3600 vfs.generic.nfs.server.gss_context_ttl: 28800 vfs.generic.nfs.server.fsevents: 1 vfs.generic.nfs.server.export_hash_size: 64 vfs.generic.nfs.server.debug_ctl: 0 vfs.generic.nfs.server.async: 0 vfs.generic.sync_timeout: 5 vfs.generic.root_unmounted_cleanly: 1 vfs.generic.hfs.kdebug.allocation: 0 vfs.generic.hfs.jnl.trim_flush: 240 vfs.generic.hfs.jnl.kdebug.trim: 0 vfs.generic.hfs.allocated: 0 vfs.generic.always_do_fullfsync: 0 vfs.generic.apfs.fusion_rc_promotion_size_limit_mb: 4096 vfs.generic.apfs.fusion_rc_flags: 0 vfs.generic.apfs.fusion_w2rc_filled_ratio_threshold: 50 vfs.generic.apfs.fusion_lc_rc_promotion_threshold_mult: 8 vfs.generic.apfs.fusion_rc_promotion_threshold_mult: 4 vfs.generic.apfs.fusion_wbc_buffersize: 16777216 vfs.generic.apfs.fusion_verbosity_flags: 0 vfs.generic.apfs.fusion_paranoia_level: 0 vfs.generic.apfs.fusion_swapfile_backoff: 4 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net.inet.tcp.keepidle: 7200000 net.inet.tcp.keepintvl: 75000 net.inet.tcp.sendspace: 131072 net.inet.tcp.recvspace: 131072 net.inet.tcp.keepinit: 75000 net.inet.tcp.v6mssdflt: 1024 net.inet.tcp.log.enable: 0 net.inet.tcp.log.enable_usage: connection:0x1 rtt:0x2 ka:0x4 log:0x8 loop:0x10 local:0x20 gw:0x40 syn:0x100 fin:0x200 rst:0x400 dropnecp:0x1000 droppcb:0x2000 droppkt:0x4000 fswflow:0x8000 net.inet.tcp.log.level_info: 0 net.inet.tcp.log.privacy: 1 net.inet.tcp.log.rate_current: 0 net.inet.tcp.log.rate_duration: 60 net.inet.tcp.log.rate_exceeded_total: 0 net.inet.tcp.log.rate_limit: 600 net.inet.tcp.log.rate_max: 0 net.inet.tcp.log.rtt_port: 0 net.inet.tcp.log.thflags_if_family: 0 net.inet.tcp.reass.overflows: 546 net.inet.tcp.backoff_maximum: 65536 net.inet.tcp.clear_tfocache: 0 net.inet.tcp.disable_tcp_heuristics: 0 net.inet.tcp.ecn_timeout: 60 net.inet.tcp.ack_strategy: 1 net.inet.tcp.aggressive_rcvwnd_inc: 1 net.inet.tcp.autorcvbufmax: 4194304 net.inet.tcp.autotunereorder: 1 net.inet.tcp.blackhole: 2 net.inet.tcp.challengeack_limit: 10 net.inet.tcp.delayed_ack: 3 net.inet.tcp.disable_access_to_stats: 1 net.inet.tcp.do_better_lr: 1 net.inet.tcp.do_rfc5961: 1 net.inet.tcp.doautorcvbuf: 1 net.inet.tcp.drop_synfin: 1 net.inet.tcp.flow_control_response: 1 net.inet.tcp.log_in_vain: 4 net.inet.tcp.maxseg_unacked: 8 net.inet.tcp.rcvsspktcnt: 512 net.inet.tcp.recv_allowed_iaj: 5 net.inet.tcp.recvbg: 0 net.inet.tcp.rexmt_thresh: 3 net.inet.tcp.rfc3465: 1 net.inet.tcp.rfc3465_lim2: 1 net.inet.tcp.slowlink_wsize: 8192 net.inet.tcp.use_min_curr_rtt: 1 net.inet.tcp.acc_iaj_react_limit: 200 net.inet.tcp.ack_compression_rate: 5 net.inet.tcp.autosndbufinc: 8192 net.inet.tcp.autosndbufmax: 4194304 net.inet.tcp.do_ack_compression: 1 net.inet.tcp.ecn_initiate_out: 2 net.inet.tcp.ecn_negotiate_in: 2 net.inet.tcp.ecn_setup_percentage: 100 net.inet.tcp.enable_tlp: 1 net.inet.tcp.local_slowstart_flightsize: 8 net.inet.tcp.min_iaj_win: 16 net.inet.tcp.packetchain: 50 net.inet.tcp.path_mtu_discovery: 1 net.inet.tcp.randomize_timestamps: 1 net.inet.tcp.recv_throttle_minwin: 16384 net.inet.tcp.rtt_recvbg: 1 net.inet.tcp.socket_unlocked_on_output: 1 net.inet.tcp.tso: 1 net.inet.tcp.sack: 1 net.inet.tcp.sack_globalholes: 0 net.inet.tcp.sack_globalmaxholes: 65536 net.inet.tcp.sack_maxholes: 128 net.inet.tcp.fastopen: 3 net.inet.tcp.fastopen_backlog: 10 net.inet.tcp.fastopen_key: net.inet.tcp.icmp_may_rst: 1 net.inet.tcp.init_rtt_from_cache: 1 net.inet.tcp.microuptime_init: 693074 net.inet.tcp.minmss: 216 net.inet.tcp.now_init: 16785642 net.inet.tcp.pcbcount: 289 net.inet.tcp.randomize_ports: 0 net.inet.tcp.rexmt_slop: 200 net.inet.tcp.rtt_min: 100 net.inet.tcp.tcbhashsize: 4096 net.inet.tcp.tso_debug: 0 net.inet.tcp.tw_pcbcount: 5 net.inet.tcp.win_scale_factor: 3 net.inet.tcp.always_keepalive: 0 net.inet.tcp.broken_peer_syn_rexmit_thres: 10 net.inet.tcp.fin_timeout: 60000 net.inet.tcp.keepcnt: 8 net.inet.tcp.max_persist_timeout: 0 net.inet.tcp.msl: 15000 net.inet.tcp.pmtud_blackhole_detection: 1 net.inet.tcp.pmtud_blackhole_mss: 1200 net.inet.tcp.tcp_resched_timerlist: 879605 net.inet.tcp.tcp_timer_advanced: 1343 net.inet.tcp.timer_fastmode_idlemax: 10 net.inet.tcp.background_sockets: 1 net.inet.tcp.cc_debug: 0 net.inet.tcp.cubic_sockets: 89 net.inet.tcp.newreno_sockets: 0 net.inet.tcp.use_ledbat: 0 net.inet.tcp.use_newreno: 0 net.inet.tcp.cubic_fast_convergence: 0 net.inet.tcp.cubic_minor_fixes: 1 net.inet.tcp.cubic_rfc_compliant: 1 net.inet.tcp.cubic_tcp_friendliness: 0 net.inet.tcp.cubic_use_minrtt: 0 net.inet.tcp.bg_allowed_increase: 8 net.inet.tcp.bg_ss_fltsz: 2 net.inet.tcp.bg_target_qdelay: 40 net.inet.tcp.bg_tether_shift: 1 net.inet.tcp.ledbat_plus_plus: 1 net.inet.tcp.rledbat: 1 net.inet.tcp.mptcp_preferred_version: 0 net.inet.udp.checksum: 1 net.inet.udp.maxdgram: 9216 net.inet.udp.recvspace: 786896 net.inet.udp.blackhole: 1 net.inet.udp.log_in_vain: 4 net.inet.udp.pcbcount: 44436 net.inet.udp.randomize_ports: 1 net.inet.ipsec.def_policy: 1 net.inet.ipsec.esp_trans_deflev: 1 net.inet.ipsec.esp_net_deflev: 1 net.inet.ipsec.ah_trans_deflev: 1 net.inet.ipsec.ah_net_deflev: 1 net.inet.ipsec.ah_cleartos: 1 net.inet.ipsec.ah_offsetmask: 0 net.inet.ipsec.dfbit: 0 net.inet.ipsec.ecn: 0 net.inet.ipsec.debug: 0 net.inet.ipsec.esp_randpad: -1 net.inet.ipsec.bypass: 1 net.inet.ipsec.esp_port: 0 net.inet.raw.maxdgram: 8192 net.inet.raw.pcbcount: 1 net.inet.raw.recvspace: 8192 net.inet.mptcp.dss_csum: 0 net.inet.mptcp.enable: 1 net.inet.mptcp.enable_v1: 1 net.inet.mptcp.fail: 1 net.inet.mptcp.keepalive: 840 net.inet.mptcp.mptcp_cap_retr: 4 net.inet.mptcp.probecnt: 5 net.inet.mptcp.probeto: 1000 net.inet.mptcp.rto_thresh: 1500 net.inet.mptcp.rtthist_thresh: 600 net.inet.mptcp.alternate_port: 0 net.inet.mptcp.dbg_area: 31 net.inet.mptcp.dbg_level: 1 net.inet.mptcp.pcbcount: 0 net.inet.mptcp.allow_aggregate: 0 net.inet.mptcp.expected_progress_headstart: 5000 net.inet.mptcp.no_first_party: 0 net.inet.mptcp.nrto: 3 net.inet.mptcp.rto: 3 net.inet.mptcp.tw: 60 net.inet.log_restricted: 0 net.link.generic.system.ifcount: 17 net.link.generic.system.port_used.verbose: 0 net.link.generic.system.port_used.wakeuuid_last_update_time: { sec = 1638849794, usec = 97513 } Mon Dec 6 23:03:14 2021 net.link.generic.system.port_used.wakeuuid_not_set_last_if: awdl0 net.link.generic.system.port_used.wakeuuid_not_set_last_time: { sec = 1638032874, usec = 234464 } Sat Nov 27 12:07:54 2021 net.link.generic.system.if_verbose: 0 net.link.generic.system.delaybased_queue: 1 net.link.generic.system.dlil_input_sanity_check: 0 net.link.generic.system.dlil_input_threads: 16 net.link.generic.system.dlil_verbose: 0 net.link.generic.system.enable_netagent: 0 net.link.generic.system.flow_advisory: 1 net.link.generic.system.hwcksum_dbg: 0 net.link.generic.system.hwcksum_dbg_adjusted: 0 net.link.generic.system.hwcksum_dbg_bad_cksum: 0 net.link.generic.system.hwcksum_dbg_bad_rxoff: 0 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net.key.debug: 0 net.key.spi_trycnt: 1000 net.key.spi_minval: 256 net.key.spi_maxval: 268435455 net.key.int_random: 60 net.key.larval_lifetime: 30 net.key.blockacq_count: 10 net.key.blockacq_lifetime: 20 net.key.esp_keymin: 256 net.key.esp_auth: 0 net.key.ah_keymin: 128 net.key.prefered_oldsa: 0 net.key.natt_keepalive_interval: 20 net.inet6.ip6.forwarding: 0 net.inet6.ip6.redirect: 1 net.inet6.ip6.hlim: 64 net.inet6.ip6.maxfragpackets: 4096 net.inet6.ip6.accept_rtadv: 1 net.inet6.ip6.keepfaith: 0 net.inet6.ip6.log_interval: 5 net.inet6.ip6.hdrnestlimit: 15 net.inet6.ip6.dad_count: 1 net.inet6.ip6.auto_flowlabel: 1 net.inet6.ip6.defmcasthlim: 1 net.inet6.ip6.gifhlim: 0 net.inet6.ip6.kame_version: 2009/apple-darwin net.inet6.ip6.use_deprecated: 1 net.inet6.ip6.rr_prune: 5 net.inet6.ip6.v6only: 0 net.inet6.ip6.rtexpire: 10 net.inet6.ip6.rtminexpire: 10 net.inet6.ip6.rtmaxcache: 128 net.inet6.ip6.use_tempaddr: 1 net.inet6.ip6.temppltime: 86400 net.inet6.ip6.tempvltime: 604800 net.inet6.ip6.auto_linklocal: 1 net.inet6.ip6.prefer_tempaddr: 1 net.inet6.ip6.use_defaultzone: 0 net.inet6.ip6.maxfrags: 8192 net.inet6.ip6.mcast_pmtu: 0 net.inet6.ip6.neighborgcthresh: 1024 net.inet6.ip6.maxifprefixes: 16 net.inet6.ip6.maxifdefrouters: 64 net.inet6.ip6.maxdynroutes: 1024 net.inet6.ip6.ula_use_tempaddr: 0 net.inet6.ip6.mcast.loop: 1 net.inet6.ip6.mcast.maxgrpsrc: 512 net.inet6.ip6.mcast.maxsocksrc: 128 net.inet6.ip6.cga_conflict_retries: 3 net.inet6.ip6.clat_debug: 0 net.inet6.ip6.compliance_profile: 0 net.inet6.ip6.only_allow_rfc4193_prefixes: 0 net.inet6.ip6.maxchainsent: 50 net.inet6.ip6.dad_enhanced: 1 net.inet6.ip6.in6_embedded_scope: 1 net.inet6.ip6.in6_embedded_scope_debug: 0 net.inet6.ip6.fragpackets: 0 net.inet6.ip6.adj_clear_hwcksum: 0 net.inet6.ip6.adj_partial_sum: 1 net.inet6.ip6.check_interface: 1 net.inet6.ip6.checkinterface_debug: 0 net.inet6.ip6.input_perf: 0 net.inet6.ip6.input_perf_bins: 0 net.inet6.ip6.output_perf: 0 net.inet6.ip6.output_perf_bins: 0 net.inet6.ip6.select_src_expensive_secondary_if: 0 net.inet6.ip6.select_src_strong_end: 1 net.inet6.ip6.select_srcaddr_debug: 0 net.inet6.ip6.select_srcif_debug: 0 net.inet6.ipsec6.def_policy: 1 net.inet6.ipsec6.esp_trans_deflev: 1 net.inet6.ipsec6.esp_net_deflev: 1 net.inet6.ipsec6.ah_trans_deflev: 1 net.inet6.ipsec6.ah_net_deflev: 1 net.inet6.ipsec6.ecn: 0 net.inet6.ipsec6.debug: 0 net.inet6.ipsec6.esp_randpad: -1 net.inet6.icmp6.rediraccept: 1 net.inet6.icmp6.redirtimeout: 600 net.inet6.icmp6.nd6_prune: 1 net.inet6.icmp6.nd6_delay: 5 net.inet6.icmp6.nd6_umaxtries: 3 net.inet6.icmp6.nd6_mmaxtries: 3 net.inet6.icmp6.nd6_useloopback: 1 net.inet6.icmp6.nodeinfo: 0 net.inet6.icmp6.errppslimit: 880 net.inet6.icmp6.nd6_debug: 0 net.inet6.icmp6.nd6_accept_6to4: 1 net.inet6.icmp6.nd6_optimistic_dad: 63 net.inet6.icmp6.errppslimit_random_incr: 500 net.inet6.icmp6.nd6_onlink_ns_rfc4861: 0 net.inet6.icmp6.nd6_prune_lazy: 5 net.inet6.icmp6.rappslimit: 10 net.inet6.icmp6.nd6_process_rti: 1 net.inet6.icmp6.nd6_llreach_base: 30 net.inet6.icmp6.nd6_maxproxiedsol: 4 net.inet6.icmp6.nd6_maxsolstgt: 8 net.inet6.icmp6.prproxy_cnt: 0 net.inet6.send.opmode: 1 net.inet6.send.opstate: 1 net.inet6.mld.debug: 0 net.inet6.mld.gsrdelay: 10 net.inet6.mld.use_allow: 1 net.inet6.mld.v1enable: 1 net.inet6.mld.v2enable: 1 net.systm.kctl.autorcvbufhigh: 0 net.systm.kctl.autorcvbufmax: 262144 net.systm.kctl.debug: 0 net.vsock.recvspace: 524288 net.vsock.sendspace: 524288 net.mpklog.enabled: 1 net.mpklog.type: 0 net.mpklog.version: 1 net.restricted_port.enforced: 1 net.restricted_port.verbose: 0 net.ipsec.debug: 0 net.ipsec.max_pending_input: 512 net.ipsec.ring_size: 64 net.ipsec.rx_fsw_ring_size: 128 net.ipsec.tx_fsw_ring_size: 64 net.ipsec.verify_interface_creation: 0 net.tracker.idle_timeout: 10 net.tracker.log: 3 net.utun.max_pending_input: 512 net.utun.ring_size: 64 net.utun.rx_fsw_ring_size: 128 net.utun.tx_fsw_ring_size: 64 net.cfil.active_count: 1 net.cfil.behavior_flags: 0 net.cfil.close_wait_timeout: 1000 net.cfil.debug: 1 net.cfil.log: 3 net.cfil.log_pid: 0 net.cfil.log_port: 0 net.cfil.sbtrim: 1 net.cfil.sock_attached_count: 266 net.netagent.active_count: 34 net.netagent.debug: 5 net.netagent.registered_count: 38 net.qos.policy.capable_enabled: 0 net.qos.policy.restrict_avapps: 0 net.qos.policy.restricted: 0 net.qos.policy.wifi_enabled: 0 net.qos.reset_dscp_to_wifi_ac_map: 0 net.qos.verbose: 0 net.classq.verbose: 0 net.classq.target_qdelay: 0 net.classq.update_interval: 0 net.pktsched.verbose: 0 net.necp.drop_all_level: 11 net.necp.debug: 0 net.necp.pass_loopback: 2 net.necp.pass_keepalives: 1 net.necp.socket_policy_count: 230 net.necp.socket_non_app_policy_count: 36 net.necp.ip_policy_count: 214 net.necp.session_count: 7 net.necp.client_fd_count: 117 net.necp.client_count: 93 net.necp.arena_count: 0 net.necp.nexus_flow_count: 0 net.necp.socket_flow_count: 9 net.necp.if_flow_count: 0 net.necp.observer_fd_count: 0 net.necp.observer_message_limit: 256 net.necp.sysctl_arena_count: 0 net.necp.drop_unentitled_level: 0 net.necp.pass_interpose: 1 net.necp.restrict_multicast: 1 net.necp.dedup_policies: 0 net.necp.necp_client_tracing_level: 0 net.necp.necp_client_tracing_pid: 0 net.necp.data_tracing_level: 0 net.necp.data_tracing_match_all: 0 net.necp.data_tracing_pid: 0 net.necp.data_tracing_port: 0 net.necp.data_tracing_proto: 0 net.necp.drop_dest_debug: 0 net.stats.debug: 0 net.stats.debug_pid: 0 net.stats.recvspace: 8192 net.stats.sendspace: 2048 net.filter_state: pf application-firewall net.statistics_privcheck: 0 net.ndrv_multi_max_count: 1024 net.alf.loglevel: 55 net.alf.perm: 1 net.alf.defaultaction: 1 net.alf.mqcount: 0 net.smb.fs.version: 400000 net.smb.fs.loglevel: 0 net.smb.fs.kern_deadtimer: 60 net.smb.fs.kern_hard_deadtimer: 600 net.smb.fs.kern_soft_deadtimer: 30 net.smb.fs.tcpsndbuf: 8388608 net.smb.fs.tcprcvbuf: 8388608 net.smb.fs.maxwrite: 8388608 net.smb.fs.maxread: 8388608 net.smb.fs.maxsegreadsize: 8388608 net.smb.fs.maxsegwritesize: 8388608 debug.iokit: 0 debug.iotrace: 0 debug.noidle: 0 debug.sched: 2 debug.toggle_address_reuse: 0 debug.swd_panic: 1 debug.swd_timeout: 0 debug.swd_wake_timeout: 0 debug.swd_sleep_timeout: 0 debug.kextlog: 4083 debug.bpf_wantpktap: 0 debug.bpf_trunc_overflow: 0 debug.bpf_maxdevices: 256 debug.bpf_maxbufsize: 524288 debug.bpf_debug: 0 debug.bpf_bufsize: 4096 debug.lowpri_throttle_tier3_window_msecs: 500 debug.lowpri_throttle_tier3_io_period_ssd_msecs: 25 debug.lowpri_throttle_tier3_io_period_msecs: 200 debug.lowpri_throttle_tier2_window_msecs: 100 debug.lowpri_throttle_tier2_io_period_ssd_msecs: 15 debug.lowpri_throttle_tier2_io_period_msecs: 85 debug.lowpri_throttle_tier1_window_msecs: 25 debug.lowpri_throttle_tier1_io_period_ssd_msecs: 5 debug.lowpri_throttle_tier1_io_period_msecs: 40 debug.lowpri_throttle_enabled: 1 debug.lowpri_throttle_max_iosize: 131072 debug.acpi_flags: 0 debug.acpi_layer: 0 debug.acpi_level: 0 debug.batman: 3 debug.iosurface.iofence_ddd: 0 debug.ioppf: 0 debug.didevice_trace: 0 debug.didevice_bounce_count: 0 debug.didevice_no_bounce_count: 0 debug.didevice_cache_fully_satisfied: 0 debug.didevice_cache_spared_bytes: 0 debug.didevice_queue_depth: 0 debug.didevice_cache_size_default: 33554432 debug.didevice_enable_cache: 1 debug.didevice_read_by_kernel_bytes: 0 debug.didevice_write_by_kernel_bytes: 0 debug.intelfb.graphicsTracePointEnable: 0 debug.intelfb.IGInterruptControl: 0 debug.intelfb.fLastRequestedPState: 0 debug.intelfb.forceSlicesGTx: 0 debug.intelfb.forceSlicesEUx: 0 debug.intelfb.sliceInfo: 8 debug.intelfb.euInfo: 8 debug.intelfb.testCase: 0 debug.intelfb.FBInfo: 0 debug.intelfb.temp0: 0 debug.intelfb.temp1: 0 debug.intelfb.temp2: 0 debug.intelfb.temp3: 0 debug.intelfb.temp4: 0 debug.intelfb.FakeType2Dongle: 0 debug.intelfb.forceDither: 0 debug.intelfb.enableDECounting: 0 debug.intelfb.enableGTHWFreqRead: 0 debug.intel.kdctlVersion: 2004312080 debug.intel.graphicsTracePointEnable: 0 debug.intel.IGInterruptControl: 0 debug.intel.perfEventEnable: 0 debug.intel.dtraceEnable: 0 debug.intel.oaEnable: 1 debug.intel.gpuUsageEnables: 15 debug.intel.gpuUsageEnablesCheck: 0 debug.intel.flipCount: 5278889 debug.intel.swapCount: 0 debug.intel.ringTakeSample: 0 debug.intel.ringOnSample: 0 debug.intel.GlobalUsageTotal_Busy_nSec: 0 debug.intel.GlobalUsageTotal_nSec: 0 debug.intel.ringMainUsage: 0 debug.intel.ringMediaUsage: 0 debug.intel.ringBlitUsage: 0 debug.intel.ringVEBoxUsage: 0 debug.intel.ringMain_nSec: 0 debug.intel.ringMedia_nSec: 0 debug.intel.ringBlit_nSec: 0 debug.intel.ringVEBox_nSec: 0 debug.intel.mSecCalcGPUBusy: 1000 debug.intel.schedPriCreditsHigh: -1 debug.intel.schedPriCreditsNormalHigh: -1 debug.intel.schedPriCreditsNormal: -1 debug.intel.schedPriCreditsLow: -1 debug.intel.schedPriPreemption: 1 debug.intel.schedPriElevatePID: -1 debug.intel.schedEnableThrottleOverride: 0 debug.intel.schedThrottleLowPriByVal: -1 debug.intel.schedThrottleNormalPriByVal: -1 debug.intel.schedThrottleNormalHighPriByVal: -1 debug.intel.schedThrottleHighPriByVal: -1 debug.intel.graphicsFirmwareTracePointEnable: 0 debug.intel.telemetryUsageReportmSec: 1000 debug.intel.telemetryVersion: 1 debug.intel.telemetryConfig: 4102 debug.intel.telemetryMode: 0 debug.intel.telemetrySampleLocations: 0 debug.intel.telemetryStartFrame: 0 debug.intel.telemetryStopFrame: 0 debug.intel.telemetryNumFrame: 0 debug.intel.telemetryTestCase: 0 debug.intel.telemetrySpot1: 0 debug.intel.telemetryStatPasses: 0 debug.intel.telemetryAltConfig: 0 debug.intel.temp0: 0 debug.intel.temp1: 0 debug.intel.temp2: 0 debug.intel.temp3: 0 debug.intel.temp4: 0 debug.agpm.LogLevel: 2 hw.ncpu: 8 hw.byteorder: 1234 hw.memsize: 17179869184 hw.activecpu: 8 hw.features.allows_security_research: 0 hw.optional.adx: 1 hw.optional.aes: 1 hw.optional.avx1_0: 1 hw.optional.avx2_0: 1 hw.optional.avx512bw: 0 hw.optional.avx512cd: 0 hw.optional.avx512dq: 0 hw.optional.avx512f: 0 hw.optional.avx512ifma: 0 hw.optional.avx512vbmi: 0 hw.optional.avx512vl: 0 hw.optional.bmi1: 1 hw.optional.bmi2: 1 hw.optional.enfstrg: 1 hw.optional.f16c: 1 hw.optional.floatingpoint: 1 hw.optional.fma: 1 hw.optional.hle: 0 hw.optional.mmx: 1 hw.optional.mpx: 0 hw.optional.rdrand: 1 hw.optional.rtm: 0 hw.optional.sgx: 0 hw.optional.sse: 1 hw.optional.sse2: 1 hw.optional.sse3: 1 hw.optional.sse4_1: 1 hw.optional.sse4_2: 1 hw.optional.supplementalsse3: 1 hw.optional.x86_64: 1 hw.perflevel0.cpusperl2: 2 hw.perflevel0.cpusperl3: 8 hw.perflevel0.l1dcachesize: 32768 hw.perflevel0.l1icachesize: 32768 hw.perflevel0.l2cachesize: 262144 hw.perflevel0.l3cachesize: 8388608 hw.perflevel0.logicalcpu: 8 hw.perflevel0.logicalcpu_max: 8 hw.perflevel0.physicalcpu: 4 hw.perflevel0.physicalcpu_max: 4 hw.targettype: Mac hw.busfrequency: 400000000 hw.busfrequency_max: 400000000 hw.busfrequency_min: 400000000 hw.cacheconfig: 8 2 2 8 0 0 0 0 0 0 hw.cachelinesize: 64 hw.cachesize: 17179869184 32768 262144 8388608 0 0 0 0 0 0 hw.cpu64bit_capable: 1 hw.cpufamily: 260141638 hw.cpufrequency: 2800000000 hw.cpufrequency_max: 2800000000 hw.cpufrequency_min: 2800000000 hw.cpusubfamily: 0 hw.cpusubtype: 8 hw.cputype: 7 hw.l1dcachesize: 32768 hw.l1icachesize: 32768 hw.l2cachesize: 262144 hw.l3cachesize: 8388608 hw.logicalcpu: 8 hw.logicalcpu_max: 8 hw.nperflevels: 1 hw.packages: 1 hw.pagesize: 4096 hw.pagesize32: 4096 hw.physicalcpu: 4 hw.physicalcpu_max: 4 hw.serialdebugmode: 0 hw.tbfrequency: 1000000000 hw.use_kernelmanagerd: 1 hw.cputhreadtype: 1 machdep.xcpm.bootplim: 0 machdep.xcpm.bootpst: 47 machdep.xcpm.cpu_thermal_level: 55 machdep.xcpm.deep_idle_count: 29 machdep.xcpm.deep_idle_last_stats: 0:01:29 CC7:99% C2:0% C3:0% C6:0% C7:0% C8:0% C9:0% C10:99% machdep.xcpm.deep_idle_log: 0 machdep.xcpm.deep_idle_total_stats: 24:12:34 CC7:99% C2:0% C3:0% C6:0% C7:0% C8:0% C9:0% C10:99% machdep.xcpm.epp_override: 0 machdep.xcpm.forced_idle_period: 30000000 machdep.xcpm.forced_idle_ratio: 100 machdep.xcpm.gpu_thermal_level: 0 machdep.xcpm.hard_plimit_max_100mhz_ratio: 47 machdep.xcpm.hard_plimit_min_100mhz_ratio: 4 machdep.xcpm.io_control_disengages: 0 machdep.xcpm.io_control_engages: 0 machdep.xcpm.io_cst_control_enabled: 1 machdep.xcpm.io_epp_boost_enabled: 1 machdep.xcpm.io_filtered_reads: 0 machdep.xcpm.io_thermal_level: 5 machdep.xcpm.lpm_enabled: 0 machdep.xcpm.lpm_plimit_max_100mhz_ratio: 26 machdep.xcpm.maxbusdelay: 4294967295 machdep.xcpm.maxintdelay: 0 machdep.xcpm.mbd_applications: 28 machdep.xcpm.mbd_mode: 1 machdep.xcpm.mbd_relaxations: 57 machdep.xcpm.mid_applications: 0 machdep.xcpm.mid_cst_control_limit: 0 machdep.xcpm.mid_mode: 1 machdep.xcpm.mid_mode_active: 0 machdep.xcpm.mid_relaxations: 0 machdep.xcpm.mode: 1 machdep.xcpm.pcps_mode: 0 machdep.xcpm.pcps_rt_override_mode: 0 machdep.xcpm.pcps_rt_override_ns: 0 machdep.xcpm.perf_hints: 0 machdep.xcpm.power_source: 0 machdep.xcpm.qos_txfr: 1 machdep.xcpm.ratio_change_ratelimit_ns: 3000000 machdep.xcpm.ratio_changes_total: 137261861 machdep.xcpm.ring_boost_enabled: 0 machdep.xcpm.soft_plimit_max_100mhz_ratio: 47 machdep.xcpm.soft_plimit_min_100mhz_ratio: 4 machdep.xcpm.tuib_enabled: 0 machdep.xcpm.tuib_ns: 0 machdep.xcpm.tuib_plimit_max_100mhz_ratio: 47 machdep.xcpm.tuib_plimit_min_100mhz_ratio: 4 machdep.xcpm.vectors_loaded_count: 1 machdep.vectors.IPI: 222 machdep.vectors.timer: 221 machdep.tsc.nanotime.generation: 31 machdep.tsc.nanotime.ns_base: 757987972812738 machdep.tsc.nanotime.scale: 1529546757 machdep.tsc.nanotime.shift: 0 machdep.tsc.nanotime.tsc_base: 2373173657601348 machdep.tsc.at_boot: 43272649 machdep.tsc.deep_idle_rebase: 1 machdep.tsc.frequency: 2808000000 machdep.tsc.rebase_abs_time: 4451216400 machdep.pmap.hashcnts: 584936518 machdep.pmap.hashmax: 21 machdep.pmap.hashwalks: 566974433 machdep.pmap.kern_pv_reserve: 16000 machdep.pmap.kernel_text_ps: 4096 machdep.misc.fast_uexc_support: 1 machdep.misc.interrupt_latency_max: 0x0 0x49 0x2f51e2 machdep.misc.nmis: 0 machdep.misc.panic_restart_timeout: 2147483647 machdep.misc.timer_queue_trace: machdep.memmap.ACPINVS: 790528 machdep.memmap.ACPIReclaim: 393216 machdep.memmap.Conventional: 17018568704 machdep.memmap.Other: 0 machdep.memmap.PalCode: 0 machdep.memmap.Reserved: 125050880 machdep.memmap.RuntimeServices: 1511424 machdep.memmap.Unusable: 0 machdep.cpu.arch_perf.events: 0 machdep.cpu.arch_perf.fixed_number: 3 machdep.cpu.arch_perf.fixed_width: 48 machdep.cpu.arch_perf.number: 4 machdep.cpu.arch_perf.version: 4 machdep.cpu.arch_perf.width: 48 machdep.cpu.arch_perf.events_number: 7 machdep.cpu.address_bits.physical: 39 machdep.cpu.address_bits.virtual: 48 machdep.cpu.mwait.extensions: 3 machdep.cpu.mwait.linesize_max: 64 machdep.cpu.mwait.linesize_min: 64 machdep.cpu.mwait.sub_Cstates: 286531872 machdep.cpu.thermal.ACNT_MCNT: 1 machdep.cpu.thermal.core_power_limits: 1 machdep.cpu.thermal.dynamic_acceleration: 1 machdep.cpu.thermal.energy_policy: 1 machdep.cpu.thermal.fine_grain_clock_mod: 1 machdep.cpu.thermal.hardware_feedback: 0 machdep.cpu.thermal.invariant_APIC_timer: 1 machdep.cpu.thermal.package_thermal_intr: 1 machdep.cpu.thermal.sensor: 1 machdep.cpu.thermal.thresholds: 2 machdep.cpu.tlb.data.small: 64 machdep.cpu.tlb.data.small_level1: 64 machdep.cpu.tlb.inst.large: 8 machdep.cpu.tsc_ccc.denominator: 2 machdep.cpu.tsc_ccc.numerator: 234 machdep.cpu.cache.L2_associativity: 4 machdep.cpu.cache.linesize: 64 machdep.cpu.cache.size: 256 machdep.cpu.xsave.extended_state: 31 832 1088 0 machdep.cpu.xsave.extended_state1: 15 832 256 0 machdep.cpu.brand: 0 machdep.cpu.brand_string: Intel(R) Core(TM) i7-8569U CPU @ 2.80GHz machdep.cpu.core_count: 4 machdep.cpu.cores_per_package: 8 machdep.cpu.extfamily: 0 machdep.cpu.extfeature_bits: 1241984796928 machdep.cpu.extfeatures: SYSCALL XD 1GBPAGE EM64T LAHF LZCNT PREFETCHW RDTSCP TSCI machdep.cpu.extmodel: 8 machdep.cpu.family: 6 machdep.cpu.feature_bits: 9221959987971750911 machdep.cpu.features: FPU VME DE PSE TSC MSR PAE MCE CX8 APIC SEP MTRR PGE MCA CMOV PAT PSE36 CLFSH DS ACPI MMX FXSR SSE SSE2 SS HTT TM PBE SSE3 PCLMULQDQ DTES64 MON DSCPL VMX EST TM2 SSSE3 FMA CX16 TPR PDCM SSE4.1 SSE4.2 x2APIC MOVBE POPCNT AES PCID XSAVE OSXSAVE SEGLIM64 TSCTMR AVX1.0 RDRAND F16C machdep.cpu.leaf7_feature_bits: 43804591 0 machdep.cpu.leaf7_feature_bits_edx: 2617257472 machdep.cpu.leaf7_features: RDWRFSGS TSC_THREAD_OFFSET SGX BMI1 AVX2 SMEP BMI2 ERMS INVPCID FPU_CSDS MPX RDSEED ADX SMAP CLFSOPT IPT MDCLEAR TSXFA IBRS STIBP L1DF SSBD machdep.cpu.logical_per_package: 16 machdep.cpu.max_basic: 22 machdep.cpu.max_ext: 2147483656 machdep.cpu.microcode_version: 234 machdep.cpu.model: 142 machdep.cpu.processor_flag: 6 machdep.cpu.signature: 526058 machdep.cpu.stepping: 10 machdep.cpu.thread_count: 8 machdep.cpu.vendor: GenuineIntel machdep.user_idle_level: 0 machdep.eager_timer_evaluation_max: 3261889 machdep.eager_timer_evaluations: 110947 machdep.x2apic_enabled: 0 machdep.x86_fp_simd_isr_uses: 0 machdep.uncore_sample_state: 0 machdep.uncore_sample_mask: 1 machdep.uncore_sample_ctl: 0 machdep.uncore_sample_interval_ms: 500 machdep.uncore_pcie_mmio_base: -536870912 audit.session.member_clear_sflags_mask: 16384 audit.session.member_set_sflags_mask: 0 audit.session.superuser_clear_sflags_mask: 24576 audit.session.superuser_set_sflags_mask: 24576 security.mac.platform_exec_logging: 0 security.mac.device_enforce: 1 security.mac.labelvnodes: 1 security.mac.max_slots: 7 security.mac.pipe_enforce: 1 security.mac.posixsem_enforce: 1 security.mac.posixshm_enforce: 1 security.mac.proc_enforce: 1 security.mac.socket_enforce: 1 security.mac.system_enforce: 1 security.mac.sysvmsg_enforce: 1 security.mac.sysvsem_enforce: 1 security.mac.sysvshm_enforce: 1 security.mac.vm_enforce: 1 security.mac.vnode_enforce: 1 security.mac.vnode_label_count: 29934 security.mac.amfi.force_policy: 0 security.mac.amfi.verbose_logging: 0 security.mac.amfi.hsp_enable: 1 security.mac.amfi.allow_only_platform_code: 0 security.mac.amfi.platform_policy: 0 security.mac.amfi.unsigned_code_policy: 0 security.mac.amfi.forced_cs_kill: 0 security.mac.amfi.recovery_on_as: 0 security.mac.amfi.platform_ident_for_hardened_proc: 13 security.mac.endpointsecurity.log_level: 1 security.mac.endpointsecurity.panic_on_soft_fail: 0 security.mac.sandbox.audio_active: 0 security.mac.sandbox.sentinel: .sb-cf6eec4f security.mac.qtn.sandbox_enforce: 1 security.mac.qtn.user_approved_exec: 1 security.mac.asp.active_rule_version: 12863296251784933357 security.mac.asp.logging_mode: 0 security.mac.asp.policy.change_scans: 1 security.mac.asp.policy.gatekeeper_enabled: 1 security.mac.asp.policy.strict_sip: 0 security.mac.asp.stats.cache_entry_count: 3096 security.mac.asp.stats.cache_allocation_count: 7815 security.mac.asp.stats.cache_release_count: 4719 security.mac.asp.stats.exec_hook_work_time: 6051952 security.mac.asp.stats.exec_hook_sleep_time: 94649208 security.mac.asp.stats.exec_hook_count: 919351 security.mac.asp.stats.library_hook_time: 94986328 security.mac.asp.stats.library_sleep_time: 151061101 security.mac.asp.stats.library_hook_count: 59836182 security.mac.asp.stats.pending_evaluation_count: 0 kperf.limits.timer_min_bg_period_ns: 1000000 kperf.limits.timer_min_bg_pet_period_ns: 5000000 kperf.limits.timer_min_period_ns: 20000 kperf.limits.timer_min_pet_period_ns: 2000000 kperf.debug_level: 0 ktrace.background_pid: 8405 ktrace.configured_by: tailspind ktrace.owning_pid: 8405 ktrace.state: 2 ============================================================================================= TESTING: checkCompilerMacros from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:164) Save the list of CPP macros defined by the C and C++ compiler, does not work for all compilers Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags/conftest.c -E -dM stdout: #define _LP64 1 #define __APPLE_CC__ 6000 #define __APPLE__ 1 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __ATOMIC_RELAXED 0 #define __ATOMIC_RELEASE 3 #define __ATOMIC_SEQ_CST 5 #define __BIGGEST_ALIGNMENT__ 16 #define __BLOCKS__ 1 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __CHAR16_TYPE__ unsigned short #define __CHAR32_TYPE__ unsigned int #define __CHAR_BIT__ 8 #define __CLANG_ATOMIC_BOOL_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR_LOCK_FREE 2 #define __CLANG_ATOMIC_INT_LOCK_FREE 2 #define __CLANG_ATOMIC_LLONG_LOCK_FREE 2 #define __CLANG_ATOMIC_LONG_LOCK_FREE 2 #define __CLANG_ATOMIC_POINTER_LOCK_FREE 2 #define __CLANG_ATOMIC_SHORT_LOCK_FREE 2 #define __CLANG_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __CONSTANT_CFSTRINGS__ 1 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_DENORM_MIN__ 4.9406564584124654e-324 #define __DBL_DIG__ 15 #define __DBL_EPSILON__ 2.2204460492503131e-16 #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_MAX_10_EXP__ 308 #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX__ 1.7976931348623157e+308 #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN__ 2.2250738585072014e-308 #define __DECIMAL_DIG__ __LDBL_DECIMAL_DIG__ #define __DYNAMIC__ 1 #define __ENVIRONMENT_MAC_OS_X_VERSION_MIN_REQUIRED__ 120000 #define __ENVIRONMENT_OS_VERSION_MIN_REQUIRED__ 120000 #define __FINITE_MATH_ONLY__ 0 #define __FLT16_DECIMAL_DIG__ 5 #define __FLT16_DENORM_MIN__ 5.9604644775390625e-8F16 #define __FLT16_DIG__ 3 #define __FLT16_EPSILON__ 9.765625e-4F16 #define __FLT16_HAS_DENORM__ 1 #define __FLT16_HAS_INFINITY__ 1 #define __FLT16_HAS_QUIET_NAN__ 1 #define __FLT16_MANT_DIG__ 11 #define __FLT16_MAX_10_EXP__ 4 #define __FLT16_MAX_EXP__ 16 #define __FLT16_MAX__ 6.5504e+4F16 #define __FLT16_MIN_10_EXP__ (-4) #define __FLT16_MIN_EXP__ (-13) #define __FLT16_MIN__ 6.103515625e-5F16 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_DENORM_MIN__ 1.40129846e-45F #define __FLT_DIG__ 6 #define __FLT_EPSILON__ 1.19209290e-7F #define __FLT_EVAL_METHOD__ 0 #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __FLT_MANT_DIG__ 24 #define __FLT_MAX_10_EXP__ 38 #define __FLT_MAX_EXP__ 128 #define __FLT_MAX__ 3.40282347e+38F #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN__ 1.17549435e-38F #define __FLT_RADIX__ 2 #define __FXSR__ 1 #define __GCC_ASM_FLAG_OUTPUTS__ 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_16 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GNUC_MINOR__ 2 #define __GNUC_PATCHLEVEL__ 1 #define __GNUC_STDC_INLINE__ 1 #define __GNUC__ 4 #define __GXX_ABI_VERSION 1002 #define __INT16_C_SUFFIX__ #define __INT16_FMTd__ "hd" #define __INT16_FMTi__ "hi" #define __INT16_MAX__ 32767 #define __INT16_TYPE__ short #define __INT32_C_SUFFIX__ #define __INT32_FMTd__ "d" #define __INT32_FMTi__ "i" #define __INT32_MAX__ 2147483647 #define __INT32_TYPE__ int #define __INT64_C_SUFFIX__ LL #define __INT64_FMTd__ "lld" #define __INT64_FMTi__ "lli" #define __INT64_MAX__ 9223372036854775807LL #define __INT64_TYPE__ long long int #define __INT8_C_SUFFIX__ #define __INT8_FMTd__ "hhd" #define __INT8_FMTi__ "hhi" #define __INT8_MAX__ 127 #define __INT8_TYPE__ signed char #define __INTMAX_C_SUFFIX__ L #define __INTMAX_FMTd__ "ld" #define __INTMAX_FMTi__ "li" #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_TYPE__ long int #define __INTMAX_WIDTH__ 64 #define __INTPTR_FMTd__ "ld" #define __INTPTR_FMTi__ "li" #define __INTPTR_MAX__ 9223372036854775807L #define __INTPTR_TYPE__ long int #define __INTPTR_WIDTH__ 64 #define __INT_FAST16_FMTd__ "hd" #define __INT_FAST16_FMTi__ "hi" #define __INT_FAST16_MAX__ 32767 #define __INT_FAST16_TYPE__ short #define __INT_FAST32_FMTd__ "d" #define __INT_FAST32_FMTi__ "i" #define __INT_FAST32_MAX__ 2147483647 #define __INT_FAST32_TYPE__ int #define __INT_FAST64_FMTd__ "lld" #define __INT_FAST64_FMTi__ "lli" #define __INT_FAST64_MAX__ 9223372036854775807LL #define __INT_FAST64_TYPE__ long long int #define __INT_FAST8_FMTd__ "hhd" #define __INT_FAST8_FMTi__ "hhi" #define __INT_FAST8_MAX__ 127 #define __INT_FAST8_TYPE__ signed char #define __INT_LEAST16_FMTd__ "hd" #define __INT_LEAST16_FMTi__ "hi" #define __INT_LEAST16_MAX__ 32767 #define __INT_LEAST16_TYPE__ short #define __INT_LEAST32_FMTd__ "d" #define __INT_LEAST32_FMTi__ "i" #define __INT_LEAST32_MAX__ 2147483647 #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_FMTd__ "lld" #define __INT_LEAST64_FMTi__ "lli" #define __INT_LEAST64_MAX__ 9223372036854775807LL #define __INT_LEAST64_TYPE__ long long int #define __INT_LEAST8_FMTd__ "hhd" #define __INT_LEAST8_FMTi__ "hhi" #define __INT_LEAST8_MAX__ 127 #define __INT_LEAST8_TYPE__ signed char #define __INT_MAX__ 2147483647 #define __LAHF_SAHF__ 1 #define __LDBL_DECIMAL_DIG__ 21 #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_DIG__ 18 #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_MAX_10_EXP__ 4932 #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LITTLE_ENDIAN__ 1 #define __LONG_LONG_MAX__ 9223372036854775807LL #define __LONG_MAX__ 9223372036854775807L #define __LP64__ 1 #define __MACH__ 1 #define __MMX__ 1 #define __NO_MATH_INLINES 1 #define __OBJC_BOOL_IS_BOOL 0 #define __OPENCL_MEMORY_SCOPE_ALL_SVM_DEVICES 3 #define __OPENCL_MEMORY_SCOPE_DEVICE 2 #define __OPENCL_MEMORY_SCOPE_SUB_GROUP 4 #define __OPENCL_MEMORY_SCOPE_WORK_GROUP 1 #define __OPENCL_MEMORY_SCOPE_WORK_ITEM 0 #define __OPTIMIZE__ 1 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_PDP_ENDIAN__ 3412 #define __PIC__ 2 #define __POINTER_WIDTH__ 64 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __PTRDIFF_FMTd__ "ld" #define __PTRDIFF_FMTi__ "li" #define __PTRDIFF_MAX__ 9223372036854775807L #define __PTRDIFF_TYPE__ long int #define __PTRDIFF_WIDTH__ 64 #define __REGISTER_PREFIX__ #define __SCHAR_MAX__ 127 #define __SEG_FS 1 #define __SEG_GS 1 #define __SHRT_MAX__ 32767 #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_WIDTH__ 32 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_INT128__ 16 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_LONG__ 8 #define __SIZEOF_POINTER__ 8 #define __SIZEOF_PTRDIFF_T__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_SIZE_T__ 8 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZE_FMTX__ "lX" #define __SIZE_FMTo__ "lo" #define __SIZE_FMTu__ "lu" #define __SIZE_FMTx__ "lx" #define __SIZE_MAX__ 18446744073709551615UL #define __SIZE_TYPE__ long unsigned int #define __SIZE_WIDTH__ 64 #define __SSE2_MATH__ 1 #define __SSE2__ 1 #define __SSE3__ 1 #define __SSE4_1__ 1 #define __SSE_MATH__ 1 #define __SSE__ 1 #define __SSP__ 1 #define __SSSE3__ 1 #define __STDC_HOSTED__ 1 #define __STDC_NO_THREADS__ 1 #define __STDC_UTF_16__ 1 #define __STDC_UTF_32__ 1 #define __STDC_VERSION__ 201710L #define __STDC__ 1 #define __UINT16_C_SUFFIX__ #define __UINT16_FMTX__ "hX" #define __UINT16_FMTo__ "ho" #define __UINT16_FMTu__ "hu" #define __UINT16_FMTx__ "hx" #define __UINT16_MAX__ 65535 #define __UINT16_TYPE__ unsigned short #define __UINT32_C_SUFFIX__ U #define __UINT32_FMTX__ "X" #define __UINT32_FMTo__ "o" #define __UINT32_FMTu__ "u" #define __UINT32_FMTx__ "x" #define __UINT32_MAX__ 4294967295U #define __UINT32_TYPE__ unsigned int #define __UINT64_C_SUFFIX__ ULL #define __UINT64_FMTX__ "llX" #define __UINT64_FMTo__ "llo" #define __UINT64_FMTu__ "llu" #define __UINT64_FMTx__ "llx" #define __UINT64_MAX__ 18446744073709551615ULL #define __UINT64_TYPE__ long long unsigned int #define __UINT8_C_SUFFIX__ #define __UINT8_FMTX__ "hhX" #define __UINT8_FMTo__ "hho" #define __UINT8_FMTu__ "hhu" #define __UINT8_FMTx__ "hhx" #define __UINT8_MAX__ 255 #define __UINT8_TYPE__ unsigned char #define __UINTMAX_C_SUFFIX__ UL #define __UINTMAX_FMTX__ "lX" #define __UINTMAX_FMTo__ "lo" #define __UINTMAX_FMTu__ "lu" #define __UINTMAX_FMTx__ "lx" #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_TYPE__ long unsigned int #define __UINTMAX_WIDTH__ 64 #define __UINTPTR_FMTX__ "lX" #define __UINTPTR_FMTo__ "lo" #define __UINTPTR_FMTu__ "lu" #define __UINTPTR_FMTx__ "lx" #define __UINTPTR_MAX__ 18446744073709551615UL #define __UINTPTR_TYPE__ long unsigned int #define __UINTPTR_WIDTH__ 64 #define __UINT_FAST16_FMTX__ "hX" #define __UINT_FAST16_FMTo__ "ho" #define __UINT_FAST16_FMTu__ "hu" #define __UINT_FAST16_FMTx__ "hx" #define __UINT_FAST16_MAX__ 65535 #define __UINT_FAST16_TYPE__ unsigned short #define __UINT_FAST32_FMTX__ "X" #define __UINT_FAST32_FMTo__ "o" #define __UINT_FAST32_FMTu__ "u" #define __UINT_FAST32_FMTx__ "x" #define __UINT_FAST32_MAX__ 4294967295U #define __UINT_FAST32_TYPE__ unsigned int #define __UINT_FAST64_FMTX__ "llX" #define __UINT_FAST64_FMTo__ "llo" #define __UINT_FAST64_FMTu__ "llu" #define __UINT_FAST64_FMTx__ "llx" #define __UINT_FAST64_MAX__ 18446744073709551615ULL #define __UINT_FAST64_TYPE__ long long unsigned int #define __UINT_FAST8_FMTX__ "hhX" #define __UINT_FAST8_FMTo__ "hho" #define __UINT_FAST8_FMTu__ "hhu" #define __UINT_FAST8_FMTx__ "hhx" #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_LEAST16_FMTX__ "hX" #define __UINT_LEAST16_FMTo__ "ho" #define __UINT_LEAST16_FMTu__ "hu" #define __UINT_LEAST16_FMTx__ "hx" #define __UINT_LEAST16_MAX__ 65535 #define __UINT_LEAST16_TYPE__ unsigned short #define __UINT_LEAST32_FMTX__ "X" #define __UINT_LEAST32_FMTo__ "o" #define __UINT_LEAST32_FMTu__ "u" #define __UINT_LEAST32_FMTx__ "x" #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_FMTX__ "llX" #define __UINT_LEAST64_FMTo__ "llo" #define __UINT_LEAST64_FMTu__ "llu" #define __UINT_LEAST64_FMTx__ "llx" #define __UINT_LEAST64_MAX__ 18446744073709551615ULL #define __UINT_LEAST64_TYPE__ long long unsigned int #define __UINT_LEAST8_FMTX__ "hhX" #define __UINT_LEAST8_FMTo__ "hho" #define __UINT_LEAST8_FMTu__ "hhu" #define __UINT_LEAST8_FMTx__ "hhx" #define __UINT_LEAST8_MAX__ 255 #define __UINT_LEAST8_TYPE__ unsigned char #define __USER_LABEL_PREFIX__ _ #define __VERSION__ "Apple LLVM 13.0.0 (clang-1300.0.29.3)" #define __WCHAR_MAX__ 2147483647 #define __WCHAR_TYPE__ int #define __WCHAR_WIDTH__ 32 #define __WINT_MAX__ 2147483647 #define __WINT_TYPE__ int #define __WINT_WIDTH__ 32 #define __amd64 1 #define __amd64__ 1 #define __apple_build_version__ 13000029 #define __block __attribute__((__blocks__(byref))) #define __clang__ 1 #define __clang_major__ 13 #define __clang_minor__ 0 #define __clang_patchlevel__ 0 #define __clang_version__ "13.0.0 (clang-1300.0.29.3)" #define __code_model_small__ 1 #define __core2 1 #define __core2__ 1 #define __llvm__ 1 #define __nonnull _Nonnull #define __null_unspecified _Null_unspecified #define __nullable _Nullable #define __pic__ 2 #define __seg_fs __attribute__((address_space(257))) #define __seg_gs __attribute__((address_space(256))) #define __strong #define __tune_core2__ 1 #define __unsafe_unretained #define __weak __attribute__((objc_gc(weak))) #define __x86_64 1 #define __x86_64__ 1 Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags/conftest.cc -E -dM stdout: #define _LP64 1 #define __APPLE_CC__ 6000 #define __APPLE__ 1 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __ATOMIC_RELAXED 0 #define __ATOMIC_RELEASE 3 #define __ATOMIC_SEQ_CST 5 #define __BIGGEST_ALIGNMENT__ 16 #define __BLOCKS__ 1 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __CHAR16_TYPE__ unsigned short #define __CHAR32_TYPE__ unsigned int #define __CHAR_BIT__ 8 #define __CLANG_ATOMIC_BOOL_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR_LOCK_FREE 2 #define __CLANG_ATOMIC_INT_LOCK_FREE 2 #define __CLANG_ATOMIC_LLONG_LOCK_FREE 2 #define __CLANG_ATOMIC_LONG_LOCK_FREE 2 #define __CLANG_ATOMIC_POINTER_LOCK_FREE 2 #define __CLANG_ATOMIC_SHORT_LOCK_FREE 2 #define __CLANG_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __CONSTANT_CFSTRINGS__ 1 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_DENORM_MIN__ 4.9406564584124654e-324 #define __DBL_DIG__ 15 #define __DBL_EPSILON__ 2.2204460492503131e-16 #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_MAX_10_EXP__ 308 #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX__ 1.7976931348623157e+308 #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN__ 2.2250738585072014e-308 #define __DECIMAL_DIG__ __LDBL_DECIMAL_DIG__ #define __DEPRECATED 1 #define __DYNAMIC__ 1 #define __ENVIRONMENT_MAC_OS_X_VERSION_MIN_REQUIRED__ 120000 #define __ENVIRONMENT_OS_VERSION_MIN_REQUIRED__ 120000 #define __EXCEPTIONS 1 #define __FINITE_MATH_ONLY__ 0 #define __FLT16_DECIMAL_DIG__ 5 #define __FLT16_DENORM_MIN__ 5.9604644775390625e-8F16 #define __FLT16_DIG__ 3 #define __FLT16_EPSILON__ 9.765625e-4F16 #define __FLT16_HAS_DENORM__ 1 #define __FLT16_HAS_INFINITY__ 1 #define __FLT16_HAS_QUIET_NAN__ 1 #define __FLT16_MANT_DIG__ 11 #define __FLT16_MAX_10_EXP__ 4 #define __FLT16_MAX_EXP__ 16 #define __FLT16_MAX__ 6.5504e+4F16 #define __FLT16_MIN_10_EXP__ (-4) #define __FLT16_MIN_EXP__ (-13) #define __FLT16_MIN__ 6.103515625e-5F16 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_DENORM_MIN__ 1.40129846e-45F #define __FLT_DIG__ 6 #define __FLT_EPSILON__ 1.19209290e-7F #define __FLT_EVAL_METHOD__ 0 #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __FLT_MANT_DIG__ 24 #define __FLT_MAX_10_EXP__ 38 #define __FLT_MAX_EXP__ 128 #define __FLT_MAX__ 3.40282347e+38F #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN__ 1.17549435e-38F #define __FLT_RADIX__ 2 #define __FXSR__ 1 #define __GCC_ASM_FLAG_OUTPUTS__ 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_16 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GLIBCXX_BITSIZE_INT_N_0 128 #define __GLIBCXX_TYPE_INT_N_0 __int128 #define __GNUC_GNU_INLINE__ 1 #define __GNUC_MINOR__ 2 #define __GNUC_PATCHLEVEL__ 1 #define __GNUC__ 4 #define __GNUG__ 4 #define __GXX_ABI_VERSION 1002 #define __GXX_RTTI 1 #define __GXX_WEAK__ 1 #define __INT16_C_SUFFIX__ #define __INT16_FMTd__ "hd" #define __INT16_FMTi__ "hi" #define __INT16_MAX__ 32767 #define __INT16_TYPE__ short #define __INT32_C_SUFFIX__ #define __INT32_FMTd__ "d" #define __INT32_FMTi__ "i" #define __INT32_MAX__ 2147483647 #define __INT32_TYPE__ int #define __INT64_C_SUFFIX__ LL #define __INT64_FMTd__ "lld" #define __INT64_FMTi__ "lli" #define __INT64_MAX__ 9223372036854775807LL #define __INT64_TYPE__ long long int #define __INT8_C_SUFFIX__ #define __INT8_FMTd__ "hhd" #define __INT8_FMTi__ "hhi" #define __INT8_MAX__ 127 #define __INT8_TYPE__ signed char #define __INTMAX_C_SUFFIX__ L #define __INTMAX_FMTd__ "ld" #define __INTMAX_FMTi__ "li" #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_TYPE__ long int #define __INTMAX_WIDTH__ 64 #define __INTPTR_FMTd__ "ld" #define __INTPTR_FMTi__ "li" #define __INTPTR_MAX__ 9223372036854775807L #define __INTPTR_TYPE__ long int #define __INTPTR_WIDTH__ 64 #define __INT_FAST16_FMTd__ "hd" #define __INT_FAST16_FMTi__ "hi" #define __INT_FAST16_MAX__ 32767 #define __INT_FAST16_TYPE__ short #define __INT_FAST32_FMTd__ "d" #define __INT_FAST32_FMTi__ "i" #define __INT_FAST32_MAX__ 2147483647 #define __INT_FAST32_TYPE__ int #define __INT_FAST64_FMTd__ "lld" #define __INT_FAST64_FMTi__ "lli" #define __INT_FAST64_MAX__ 9223372036854775807LL #define __INT_FAST64_TYPE__ long long int #define __INT_FAST8_FMTd__ "hhd" #define __INT_FAST8_FMTi__ "hhi" #define __INT_FAST8_MAX__ 127 #define __INT_FAST8_TYPE__ signed char #define __INT_LEAST16_FMTd__ "hd" #define __INT_LEAST16_FMTi__ "hi" #define __INT_LEAST16_MAX__ 32767 #define __INT_LEAST16_TYPE__ short #define __INT_LEAST32_FMTd__ "d" #define __INT_LEAST32_FMTi__ "i" #define __INT_LEAST32_MAX__ 2147483647 #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_FMTd__ "lld" #define __INT_LEAST64_FMTi__ "lli" #define __INT_LEAST64_MAX__ 9223372036854775807LL #define __INT_LEAST64_TYPE__ long long int #define __INT_LEAST8_FMTd__ "hhd" #define __INT_LEAST8_FMTi__ "hhi" #define __INT_LEAST8_MAX__ 127 #define __INT_LEAST8_TYPE__ signed char #define __INT_MAX__ 2147483647 #define __LAHF_SAHF__ 1 #define __LDBL_DECIMAL_DIG__ 21 #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_DIG__ 18 #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_MAX_10_EXP__ 4932 #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LITTLE_ENDIAN__ 1 #define __LONG_LONG_MAX__ 9223372036854775807LL #define __LONG_MAX__ 9223372036854775807L #define __LP64__ 1 #define __MACH__ 1 #define __MMX__ 1 #define __NO_MATH_INLINES 1 #define __OBJC_BOOL_IS_BOOL 0 #define __OPENCL_MEMORY_SCOPE_ALL_SVM_DEVICES 3 #define __OPENCL_MEMORY_SCOPE_DEVICE 2 #define __OPENCL_MEMORY_SCOPE_SUB_GROUP 4 #define __OPENCL_MEMORY_SCOPE_WORK_GROUP 1 #define __OPENCL_MEMORY_SCOPE_WORK_ITEM 0 #define __OPTIMIZE__ 1 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_PDP_ENDIAN__ 3412 #define __PIC__ 2 #define __POINTER_WIDTH__ 64 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __PTRDIFF_FMTd__ "ld" #define __PTRDIFF_FMTi__ "li" #define __PTRDIFF_MAX__ 9223372036854775807L #define __PTRDIFF_TYPE__ long int #define __PTRDIFF_WIDTH__ 64 #define __REGISTER_PREFIX__ #define __SCHAR_MAX__ 127 #define __SEG_FS 1 #define __SEG_GS 1 #define __SHRT_MAX__ 32767 #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_WIDTH__ 32 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_INT128__ 16 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_LONG__ 8 #define __SIZEOF_POINTER__ 8 #define __SIZEOF_PTRDIFF_T__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_SIZE_T__ 8 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZE_FMTX__ "lX" #define __SIZE_FMTo__ "lo" #define __SIZE_FMTu__ "lu" #define __SIZE_FMTx__ "lx" #define __SIZE_MAX__ 18446744073709551615UL #define __SIZE_TYPE__ long unsigned int #define __SIZE_WIDTH__ 64 #define __SSE2_MATH__ 1 #define __SSE2__ 1 #define __SSE3__ 1 #define __SSE4_1__ 1 #define __SSE_MATH__ 1 #define __SSE__ 1 #define __SSP__ 1 #define __SSSE3__ 1 #define __STDCPP_DEFAULT_NEW_ALIGNMENT__ 16UL #define __STDCPP_THREADS__ 1 #define __STDC_HOSTED__ 1 #define __STDC_NO_THREADS__ 1 #define __STDC_UTF_16__ 1 #define __STDC_UTF_32__ 1 #define __STDC__ 1 #define __UINT16_C_SUFFIX__ #define __UINT16_FMTX__ "hX" #define __UINT16_FMTo__ "ho" #define __UINT16_FMTu__ "hu" #define __UINT16_FMTx__ "hx" #define __UINT16_MAX__ 65535 #define __UINT16_TYPE__ unsigned short #define __UINT32_C_SUFFIX__ U #define __UINT32_FMTX__ "X" #define __UINT32_FMTo__ "o" #define __UINT32_FMTu__ "u" #define __UINT32_FMTx__ "x" #define __UINT32_MAX__ 4294967295U #define __UINT32_TYPE__ unsigned int #define __UINT64_C_SUFFIX__ ULL #define __UINT64_FMTX__ "llX" #define __UINT64_FMTo__ "llo" #define __UINT64_FMTu__ "llu" #define __UINT64_FMTx__ "llx" #define __UINT64_MAX__ 18446744073709551615ULL #define __UINT64_TYPE__ long long unsigned int #define __UINT8_C_SUFFIX__ #define __UINT8_FMTX__ "hhX" #define __UINT8_FMTo__ "hho" #define __UINT8_FMTu__ "hhu" #define __UINT8_FMTx__ "hhx" #define __UINT8_MAX__ 255 #define __UINT8_TYPE__ unsigned char #define __UINTMAX_C_SUFFIX__ UL #define __UINTMAX_FMTX__ "lX" #define __UINTMAX_FMTo__ "lo" #define __UINTMAX_FMTu__ "lu" #define __UINTMAX_FMTx__ "lx" #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_TYPE__ long unsigned int #define __UINTMAX_WIDTH__ 64 #define __UINTPTR_FMTX__ "lX" #define __UINTPTR_FMTo__ "lo" #define __UINTPTR_FMTu__ "lu" #define __UINTPTR_FMTx__ "lx" #define __UINTPTR_MAX__ 18446744073709551615UL #define __UINTPTR_TYPE__ long unsigned int #define __UINTPTR_WIDTH__ 64 #define __UINT_FAST16_FMTX__ "hX" #define __UINT_FAST16_FMTo__ "ho" #define __UINT_FAST16_FMTu__ "hu" #define __UINT_FAST16_FMTx__ "hx" #define __UINT_FAST16_MAX__ 65535 #define __UINT_FAST16_TYPE__ unsigned short #define __UINT_FAST32_FMTX__ "X" #define __UINT_FAST32_FMTo__ "o" #define __UINT_FAST32_FMTu__ "u" #define __UINT_FAST32_FMTx__ "x" #define __UINT_FAST32_MAX__ 4294967295U #define __UINT_FAST32_TYPE__ unsigned int #define __UINT_FAST64_FMTX__ "llX" #define __UINT_FAST64_FMTo__ "llo" #define __UINT_FAST64_FMTu__ "llu" #define __UINT_FAST64_FMTx__ "llx" #define __UINT_FAST64_MAX__ 18446744073709551615ULL #define __UINT_FAST64_TYPE__ long long unsigned int #define __UINT_FAST8_FMTX__ "hhX" #define __UINT_FAST8_FMTo__ "hho" #define __UINT_FAST8_FMTu__ "hhu" #define __UINT_FAST8_FMTx__ "hhx" #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_LEAST16_FMTX__ "hX" #define __UINT_LEAST16_FMTo__ "ho" #define __UINT_LEAST16_FMTu__ "hu" #define __UINT_LEAST16_FMTx__ "hx" #define __UINT_LEAST16_MAX__ 65535 #define __UINT_LEAST16_TYPE__ unsigned short #define __UINT_LEAST32_FMTX__ "X" #define __UINT_LEAST32_FMTo__ "o" #define __UINT_LEAST32_FMTu__ "u" #define __UINT_LEAST32_FMTx__ "x" #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_FMTX__ "llX" #define __UINT_LEAST64_FMTo__ "llo" #define __UINT_LEAST64_FMTu__ "llu" #define __UINT_LEAST64_FMTx__ "llx" #define __UINT_LEAST64_MAX__ 18446744073709551615ULL #define __UINT_LEAST64_TYPE__ long long unsigned int #define __UINT_LEAST8_FMTX__ "hhX" #define __UINT_LEAST8_FMTo__ "hho" #define __UINT_LEAST8_FMTu__ "hhu" #define __UINT_LEAST8_FMTx__ "hhx" #define __UINT_LEAST8_MAX__ 255 #define __UINT_LEAST8_TYPE__ unsigned char #define __USER_LABEL_PREFIX__ _ #define __VERSION__ "Apple LLVM 13.0.0 (clang-1300.0.29.3)" #define __WCHAR_MAX__ 2147483647 #define __WCHAR_TYPE__ int #define __WCHAR_WIDTH__ 32 #define __WINT_MAX__ 2147483647 #define __WINT_TYPE__ int #define __WINT_WIDTH__ 32 #define __amd64 1 #define __amd64__ 1 #define __apple_build_version__ 13000029 #define __block __attribute__((__blocks__(byref))) #define __clang__ 1 #define __clang_major__ 13 #define __clang_minor__ 0 #define __clang_patchlevel__ 0 #define __clang_version__ "13.0.0 (clang-1300.0.29.3)" #define __code_model_small__ 1 #define __core2 1 #define __core2__ 1 #define __cplusplus 199711L #define __cpp_exceptions 199711L #define __cpp_impl_destroying_delete 201806L #define __cpp_rtti 199711L #define __cpp_threadsafe_static_init 200806L #define __llvm__ 1 #define __nonnull _Nonnull #define __null_unspecified _Null_unspecified #define __nullable _Nullable #define __pic__ 2 #define __private_extern__ extern #define __seg_fs __attribute__((address_space(257))) #define __seg_gs __attribute__((address_space(256))) #define __strong #define __tune_core2__ 1 #define __unsafe_unretained #define __weak __attribute__((objc_gc(weak))) #define __x86_64 1 #define __x86_64__ 1 child config.compilerFlags 2.029664 Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. ============================================================================================= TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1832) Check for -std=c99 or equivalent flag Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O Accepted C99 compile flag: ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:187) Check for the C/CXX restrict keyword Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -V ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.c:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:448) Activate format string checking if using the GNU compilers ============================================================================================= TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:157) Check for C inline keyword ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ============================================================================================= TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:459) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.o -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ============================================================================================= TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:251) Determines the libraries needed to link with C compiled code ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/confc.o -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib C libraries are not needed when using C++ linker ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1783) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -MMD -MP /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Trying Cxx compiler flag -MMD -MP Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC -MMD -MP /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:187) Check for the C/CXX restrict keyword Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -V ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.cc:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx --help | head -n 500 Detected CLANG compiler ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:528) Determine the CXX dialect supported by the compiler(language) [and correspoding compiler option - if any]. isGNUish indicates if the compiler is gnu compliant (i.e. clang). -with--dialect can take options: auto: use highest supported dialect configure can determine [[c|gnu][xx|++]]20: not yet supported [[c|gnu][xx|++]]17: gnu++17 or c++17 [[c|gnu][xx|++]]14: gnu++14 or c++14 [[c|gnu][xx|++]]11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default On return this function sets the following values: - if needed, appends the relevant CXX dialect flag to compiler flags - self.cxxDialectRange = (minSupportedDialect,maxSupportedDialect) (e.g. ('c++03','c++14')) - self.addDefine('HAVE_{LANG}_DIALECT_CXX{DIALECT_NUM}',1) for every supported dialect - self.lang+'dialect' = 'c++'+maxDialectNumber (e.g. 'c++14') but ONLY if the user specifically requests a dialect version, otherwise this is not set or raises a RuntimeException if either: - The user has set both the --with-dialect=[...] configure options and -std=[...] in their compiler flags - The combination of specifically requested packages cannnot all be compiled with the same flag - The compiler does not support at minimum -std=c++03 checkCxxDialect: checking C++ dialect version for language "CXX" using compiler "/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx" checkCxxDialect: PETSc believes compiler (/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx) IS gnu-ish checkCxxDialect: configure option after sanitization: --with-cxx-dialect=AUTO checkCxxDialect: user has NOT explicitly selected dialect AUTO for CXX checkCxxDialect: using CXX dialect -std=03 as lower bound but package(s): - kokkos Require(s) at least -std=c++14, using package requirement -std=c++14 checkCxxDialect: Have potential flag pool: - -std=gnu++17 - -std=c++17 - -std=gnu++14 - -std=c++14 checkCxxDialect: checking CXX 17 for Cxx with -std=gnu++17 Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC -std=gnu++17 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" // c++03 includes #include template void ignore(const T&) { } // silence unused variable warnings class valClass { public: int i; valClass() { i = 3; } valClass(int x) : i(x) { } }; // c++11 includes #include #include #include class MoveSemantics { std::unique_ptr _member; public: MoveSemantics(int val = 4) : _member(new valClass(val)) { } MoveSemantics& operator=(MoveSemantics &&other) noexcept = default; }; template constexpr T Cubed( T x ) { return x*x*x; } auto trailing(int x) -> int { return x+2; } enum class Shapes : int {SQUARE,CIRCLE}; template struct Tuple { }; using PetscErrorCode = int; // c++14 includes #include template constexpr T pi = T(3.1415926535897932385L); // variable template // c++17 includes #include #include #include #include [[nodiscard]] int nodiscardFunc() { return 0; } struct S2 { // static inline member variables since c++17 static inline int var = 8675309; void f(int i); }; void S2::f(int i) { // until c++17: Error: invalid syntax // since c++17: OK: captures the enclosing S2 by copy auto lmbd = [=, *this] { std::cout << i << " " << this->var << std::endl; }; lmbd(); } int main() { // c++03 body valClass cls = valClass(); // value initialization int i = cls.i; // i is not declared const const int& rci = i; // but rci is const_cast(rci) = 4; // c++11 body constexpr int big_value = 1234; decltype(big_value) ierr = big_value; auto ret = trailing(ierr); MoveSemantics bob; MoveSemantics alice; alice = std::move(bob);ignore(alice); Tuple<> t0;ignore(t0); Tuple t1;ignore(t1); Tuple t2;ignore(t2); std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x << ret << std::endl; // c++14 body auto ptr = std::make_unique(); *ptr = 1; std::cout << pi << std::endl; constexpr const std::complex const_i(0.0,1.0); auto lambda = [](auto x, auto y) { return x + y; }; std::cout << lambda(3,4) << std::real(const_i) << std::endl; // c++17 body std::variant v,w; v = 42; // v contains int int ivar = std::get(v); w = std::get<0>(v); // same effect as the previous line w = v; // same effect as the previous line S2 foo; foo.f(ivar); if constexpr (std::is_arithmetic_v) std::cout << "c++17" << std::endl; typedef std::integral_constant squareShape; // static_assert with no message since c++17 static_assert(std::is_same_v); auto val = nodiscardFunc();ignore(val); ; return 0; } Output from compiling with -fPIC -std=gnu++17 Added Cxx compiler flag -std=gnu++17 checkCxxDialect: success using -std=gnu++17 for Cxx dialect c++17, set new cxxDialectRange: ('c++14', 'c++17') Defined "HAVE_CXX_DIALECT_CXX03" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX17" to "1" ============================================================================================= TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:478) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC -std=gnu++17 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c:5:22: warning: private field 'i' is not used [-Wunused-private-field] class somename { int i; };; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c:5:22: warning: private field 'i' is not used [-Wunused-private-field] class somename { int i; };; ^ 1 warning generated. ============================================================================================= TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:172) Check for C++ inline keyword ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC -std=gnu++17 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ============================================================================================= TESTING: checkCxxComplexFix from config.compilers(config/BuildSystem/config/compilers.py:876) Determine if the CXX compiler supports utilities provided by petsccxxcomplexfix.h ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC -std=gnu++17 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define Type int #define PetscReal double #define PetscComplex std::complex /* The two lines, from petsccxxcomplexfix.h, can cause the combination "C++14 + GCC-4.x libstdc++ library" to fail, complaining imag() is not marked const. If the compiler can compile these two lines, it should be able to compile other lines. */ static inline PetscComplex operator-(const Type& lhs, const PetscComplex& rhs) { return PetscReal(lhs) - const_cast(rhs); } static inline PetscComplex operator/(const Type& lhs, const PetscComplex& rhs) { return PetscReal(lhs) / const_cast(rhs); } int main() { Type x = 2; PetscComplex y(1.0,1.0),z,w; z = x - y; w = x / y; std::cout << z << w; ; return 0; } the CXX compiler supports petsccxxcomplexfix.h Defined "HAVE_CXX_COMPLEX_FIX" to "1" ============================================================================================= TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:905) Determines the libraries needed to link with C++ from C and Fortran ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC -std=gnu++17 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/confc.o -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "std::__1::locale::use_facet(std::__1::locale::id&) const", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::ios_base::getloc() const", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)", referenced from: std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char) in confc.o "std::__1::basic_string, std::__1::allocator >::~basic_string()", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::~sentry()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::cout", referenced from: asub() in confc.o "std::__1::ctype::id", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::locale::~locale()", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::ios_base::__set_badbit_and_consider_rethrow()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::clear(unsigned int)", referenced from: std::__1::ios_base::setstate(unsigned int) in confc.o "std::terminate()", referenced from: ___clang_call_terminate in confc.o "typeinfo for int", referenced from: asub() in confc.o GCC_except_table0 in confc.o "operator delete(void*)", referenced from: void std::__1::__libcpp_operator_delete(void*) in confc.o "operator new(unsigned long)", referenced from: void* std::__1::__libcpp_operator_new(unsigned long) in confc.o "___cxa_allocate_exception", referenced from: asub() in confc.o "___cxa_begin_catch", referenced from: asub() in confc.o ___clang_call_terminate in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_end_catch", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_throw", referenced from: asub() in confc.o "___gxx_personality_v0", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o std::__1::basic_ios >::widen(char) const in confc.o Dwarf Exception Unwind Info (__eh_frame) in confc.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "std::__1::locale::use_facet(std::__1::locale::id&) const", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::ios_base::getloc() const", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)", referenced from: std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char) in confc.o "std::__1::basic_string, std::__1::allocator >::~basic_string()", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::~sentry()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::cout", referenced from: asub() in confc.o "std::__1::ctype::id", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::locale::~locale()", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::ios_base::__set_badbit_and_consider_rethrow()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::clear(unsigned int)", referenced from: std::__1::ios_base::setstate(unsigned int) in confc.o "std::terminate()", referenced from: ___clang_call_terminate in confc.o "typeinfo for int", referenced from: asub() in confc.o GCC_except_table0 in confc.o "operator delete(void*)", referenced from: void std::__1::__libcpp_operator_delete(void*) in confc.o "operator new(unsigned long)", referenced from: void* std::__1::__libcpp_operator_new(unsigned long) in confc.o "___cxa_allocate_exception", referenced from: asub() in confc.o "___cxa_begin_catch", referenced from: asub() in confc.o ___clang_call_terminate in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_end_catch", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_throw", referenced from: asub() in confc.o "___gxx_personality_v0", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o std::__1::basic_ios >::widen(char) const in confc.o Dwarf Exception Unwind Info (__eh_frame) in confc.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "std::__1::locale::use_facet(std::__1::locale::id&) const", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::ios_base::getloc() const", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)", referenced from: std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char) in confc.o "std::__1::basic_string, std::__1::allocator >::~basic_string()", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::~sentry()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::cout", referenced from: asub() in confc.o "std::__1::ctype::id", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::locale::~locale()", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::ios_base::__set_badbit_and_consider_rethrow()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::clear(unsigned int)", referenced from: std::__1::ios_base::setstate(unsigned int) in confc.o "std::terminate()", referenced from: ___clang_call_terminate in confc.o "typeinfo for int", referenced from: asub() in confc.o GCC_except_table0 in confc.o "operator delete(void*)", referenced from: void std::__1::__libcpp_operator_delete(void*) in confc.o "operator new(unsigned long)", referenced from: void* std::__1::__libcpp_operator_new(unsigned long) in confc.o "___cxa_allocate_exception", referenced from: asub() in confc.o "___cxa_begin_catch", referenced from: asub() in confc.o ___clang_call_terminate in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_end_catch", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_throw", referenced from: asub() in confc.o "___gxx_personality_v0", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o std::__1::basic_ios >::widen(char) const in confc.o Dwarf Exception Unwind Info (__eh_frame) in confc.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc --help | head -n 500 Detected CLANG compiler ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC -std=gnu++17 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers/confc.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib compilers: C++ requires -lc++ to link with C compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc --version stdout: Apple clang version 13.0.0 (clang-1300.0.29.3) Target: x86_64-apple-darwin21.1.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -V ============================================================================================= TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1914) child config.compilers 4.174796 ============================================================================================= TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure/conftest.c:6:7: warning: unused variable 'closure' [-Wunused-variable] int (^closure)(int);; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_CLOSURE" to "1" child config.utilities.closure 0.152833 child config.compilersFortran 0.000034 ============================================================================================= TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:107) ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c ======== Checking running linked program ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest ============================================================================================= TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:140) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c ============================================================================================= TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:175) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:197) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ============================================================================================= TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:8:8: warning: if statement has empty body [-Wempty-body] if (pi); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:8:8: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_MACHINE_ENDIAN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_MACHINE_ENDIAN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 5.608819 ============================================================================================= TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails/conftest.c:4:60: error: use of undeclared identifier '_SC_LEVEL1_DCACHE_LINESIZE'; did you mean 'getconf_LEVEL1_DCACHE_LINESIZE'? long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } ^~~~~~~~~~~~~~~~~~~~~~~~~~ getconf_LEVEL1_DCACHE_LINESIZE /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails/conftest.c:4:6: note: 'getconf_LEVEL1_DCACHE_LINESIZE' declared here long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ======== Checking running linked program ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "32" child config.utilities.cacheDetails 0.449387 ============================================================================================= TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:11:18: warning: unused variable 'a' [-Wunused-variable] struct sigaction a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ============================================================================================= TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:11:1: error: unknown type name '__int64'; did you mean '__int64_t'? __int64 a;; ^~~~~~~ __int64_t /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/i386/_types.h:48:33: note: '__int64_t' declared here typedef long long __int64_t; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ============================================================================================= TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] size_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ============================================================================================= TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] mode_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] off_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ============================================================================================= TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:11:9: warning: unused variable 'a' [-Wunused-variable] int32_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ============================================================================================= TESTING: checkPID from config.types(config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] pid_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ============================================================================================= TESTING: checkUID from config.types(config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c ============================================================================================= TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { double _Complex x; x = I; ; return 0; } Defined "HAVE_C99_COMPLEX" to "1" ============================================================================================= TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:95) Check for complex numbers in namespace std ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC -std=gnu++17 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.cc:6:22: warning: unused variable 'x' [-Wunused-variable] std::complex x; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_CXX_COMPLEX" to "1" ============================================================================================= TESTING: checkConst from config.types(config/BuildSystem/config/types.py:106) Checks for working const, and if not found defines it to empty string ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:24:16: warning: if statement has empty body [-Wempty-body] if (zero.x); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:24:16: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:25:14: warning: if statement has empty body [-Wempty-body] if (x[0]); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:25:14: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:31:14: warning: if statement has empty body [-Wempty-body] if (*s); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:31:14: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:52:15: warning: if statement has empty body [-Wempty-body] if (foo); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:52:15: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:46:20: warning: variable 'b' is uninitialized when used here [-Wuninitialized] struct s *b; b->j = 5; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:46:18: note: initialize the variable 'b' to silence this warning struct s *b; b->j = 5; ^ = 0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:30:8: warning: variable 't' is uninitialized when used here [-Wuninitialized] *t++ = 0; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c:27:14: note: initialize the variable 't' to silence this warning char *t; ^ = 0 6 warnings generated. Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" Defined "USING_64BIT_PTR" to "1" ============================================================================================= TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:196) ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC -std=gnu++17 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ============================================================================================= TESTING: checkMaxPathLen from config.types(config/BuildSystem/config/types.py:218) Determining PETSC_MAX_PATH_LEN ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types/conftest.c Defined "MAX_PATH_LEN" to "1024" child config.types 2.511285 ============================================================================================= TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.001076 ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lfpe -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lsocket -lnsl -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lfpe -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lsocket -lnsl -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:296) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib CheckMath: using math library [] ============================================================================================= TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:315) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib erf() found Defined "HAVE_ERF" to "1" ============================================================================================= TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:324) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib tgamma() found Defined "HAVE_TGAMMA" to "1" ============================================================================================= TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:333) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib lgamma() found Defined "HAVE_LGAMMA" to "1" ============================================================================================= TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:346) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_FENV_H" to "1" ============================================================================================= TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:354) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c:5:81: warning: unused variable 'y' [-Wunused-variable] static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib log2() found Defined "HAVE_LOG2" to "1" ============================================================================================= TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:363) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib realtime functions are linked in by default ============================================================================================= TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:379) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -ldl -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 1.749175 ============================================================================================= TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:38) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: __check_bgl_perfctr_void in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: __check_bgl_perfctr_void in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: __check_bgl_perfctr_void in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [ADIOI_BGL_Open] in library [''] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: __check_ADIOI_BGL_Open in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: __check_ADIOI_BGL_Open in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: __check_ADIOI_BGL_Open in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): *********BGL/IBM test failure Defined "USE_BACKWARD_LOOP" to "1" Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ============================================================================================= TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:99) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.282794 child config.atomics 0.000008 ============================================================================================= TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib ============================================================================================= TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib ============================================================================================= TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_VSNPRINTF" to "1" ============================================================================================= TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_NANOSLEEP" to "1" ============================================================================================= TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_MEMMOVE" to "1" ============================================================================================= TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC -std=gnu++17 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "SIGNAL_CAST" to " " ============================================================================================= TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c:6:25: error: assigning to 'int' from incompatible type 'void' int ierr; void *p; ierr = free(p); return 0; ^ ~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_VA_COPY" to "1" ============================================================================================= TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [_snprintf _access popen dlclose _sleep fpresetsticky sbreak socket getcwd readlink memalign getdomainname gethostbyname snprintf realpath dlopen lseek dlsym _pipe getrusage _getcwd PXFGETARG stricmp gethostname fork _set_output_format usleep _mkdir dlerror getpagesize getwd strcasecmp access sleep drand48 _lseek rand clock fpsetsticky time bzero uname] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c:26:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c:26:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c:44:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c:44:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c:53:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c:53:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); char _access(); char popen(); char dlclose(); char _sleep(); char fpresetsticky(); char sbreak(); char socket(); char getcwd(); char readlink(); char memalign(); char getdomainname(); char gethostbyname(); char snprintf(); char realpath(); char dlopen(); char lseek(); char dlsym(); char _pipe(); char getrusage(); char _getcwd(); char PXFGETARG(); char stricmp(); char gethostname(); char fork(); char _set_output_format(); char usleep(); char _mkdir(); char dlerror(); char getpagesize(); char getwd(); char strcasecmp(); char access(); char sleep(); char drand48(); char _lseek(); char rand(); char clock(); char fpsetsticky(); char time(); char bzero(); char uname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o "__access", referenced from: _main in conftest.o "__getcwd", referenced from: _main in conftest.o "__lseek", referenced from: _main in conftest.o "__mkdir", referenced from: _main in conftest.o "__pipe", referenced from: _main in conftest.o "__set_output_format", referenced from: _main in conftest.o "__sleep", referenced from: _main in conftest.o "__snprintf", referenced from: _main in conftest.o "_fpresetsticky", referenced from: _main in conftest.o "_fpsetsticky", referenced from: _main in conftest.o "_memalign", referenced from: _main in conftest.o "_sbreak", referenced from: _main in conftest.o "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o "__access", referenced from: _main in conftest.o "__getcwd", referenced from: _main in conftest.o "__lseek", referenced from: _main in conftest.o "__mkdir", referenced from: _main in conftest.o "__pipe", referenced from: _main in conftest.o "__set_output_format", referenced from: _main in conftest.o "__sleep", referenced from: _main in conftest.o "__snprintf", referenced from: _main in conftest.o "_fpresetsticky", referenced from: _main in conftest.o "_fpsetsticky", referenced from: _main in conftest.o "_memalign", referenced from: _main in conftest.o "_sbreak", referenced from: _main in conftest.o "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o "__access", referenced from: _main in conftest.o "__getcwd", referenced from: _main in conftest.o "__lseek", referenced from: _main in conftest.o "__mkdir", referenced from: _main in conftest.o "__pipe", referenced from: _main in conftest.o "__set_output_format", referenced from: _main in conftest.o "__sleep", referenced from: _main in conftest.o "__snprintf", referenced from: _main in conftest.o "_fpresetsticky", referenced from: _main in conftest.o "_fpsetsticky", referenced from: _main in conftest.o "_memalign", referenced from: _main in conftest.o "_sbreak", referenced from: _main in conftest.o "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [popen dlclose socket readlink getdomainname gethostbyname realpath dlopen dlsym getrusage gethostname] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char popen(); char dlclose(); char socket(); char readlink(); char getdomainname(); char gethostbyname(); char realpath(); char dlopen(); char dlsym(); char getrusage(); char gethostname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_POPEN" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Checking for functions [fork usleep dlerror getpagesize getwd strcasecmp drand48 rand clock time bzero uname] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c:18:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c:18:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c:23:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c:23:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char usleep(); char dlerror(); char getpagesize(); char getwd(); char strcasecmp(); char drand48(); char rand(); char clock(); char time(); char bzero(); char uname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_FORK" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_GETWD" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_RAND" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_TIME" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_UNAME" to "1" Checking for functions [_snprintf] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [_access] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [_sleep] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [fpresetsticky] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_fpresetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_fpresetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_fpresetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [sbreak] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [getcwd] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_GETCWD" to "1" Checking for functions [memalign] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [snprintf] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c:13:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c:13:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_SNPRINTF" to "1" Checking for functions [lseek] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_LSEEK" to "1" Checking for functions [_pipe] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__pipe", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__pipe", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__pipe", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [_getcwd] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [PXFGETARG] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [stricmp] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [_set_output_format] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__set_output_format", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__set_output_format", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__set_output_format", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [_mkdir] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__mkdir", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__mkdir", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__mkdir", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [access] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_ACCESS" to "1" Checking for functions [sleep] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_SLEEP" to "1" Checking for functions [_lseek] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [fpsetsticky] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_fpsetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_fpsetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_fpsetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_MMAP" to "1" child config.functions 4.658934 ============================================================================================= TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize/conftest.c:38:18: error: implicit declaration of function 'getpagesize' is invalid in C99 [-Werror,-Wimplicit-function-declaration] f2 = getpagesize() * ((double)(temp2.ru_maxrss-temp1.ru_maxrss))/(4.0*ARRAYSIZE); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize/conftest.c:59:1: error: expected '}' ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize/conftest.c:12:12: note: to match this '{' int main() { ^ 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include #include #include #include int main() { #define ARRAYSIZE 10000000 int i,*m; struct rusage temp1,temp2; double f0,f1,f2; if (getrusage(RUSAGE_SELF,&temp1)) { printf("Error calling getrusage()\n"); return -1; } m = malloc(ARRAYSIZE*sizeof(int)); if (!m) { printf("Error calling malloc()\n"); return -3; } for (i=0; i .90 && f0 < 1.1) { printf("uses bytes in getrusage()\n"); return 1; if (f1 > .90 && f1 < 1.1) { printf("uses 1024 size chunks in getrusage()\n"); return 2; } else if (f2 > .9 && f2 < 1.1) { printf("uses getpagesize() chunks in getrusage()\n"); return 3; } printf("unable to determine if uses bytes, 1024 or getpagesize() chunks in getrusage()\n"); return -2;; return 0; } Compile failed inside link output from getrusage() child config.utilities.getResidentSetSize 0.089305 child config.utilities.fortranCommandLine 0.000009 ============================================================================================= TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated.: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated.: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 368 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated.: child config.utilities.FPTrap 0.179816 ============================================================================================= TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros/conftest.c:4:10: fatal error: 'sysctl.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros/conftest.c:7:1: error: use of undeclared identifier 'cpu_set_t' cpu_set_t mset; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros/conftest.c:8:1: error: implicit declaration of function 'CPU_ZERO' is invalid in C99 [-Werror,-Wimplicit-function-declaration] CPU_ZERO(&mset);; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros/conftest.c:8:11: error: use of undeclared identifier 'mset' CPU_ZERO(&mset);; ^ 3 errors generated. Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info)) return 0;; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 0.387774 ============================================================================================= TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:6:9: warning: unused variable 'foo' [-Wunused-variable] u_short foo; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ============================================================================================= TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ============================================================================================= TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ============================================================================================= TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c:25:7: warning: incompatible function pointer types initializing 'int (*)(char *, size_t)' (aka 'int (*)(char *, unsigned long)') with an expression of type 'int (char *, int)' [-Wincompatible-function-pointer-types] int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ ~~~~~~~~~~~~~ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC -std=gnu++17 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.cc:25:7: error: cannot initialize a variable of type 'int (*)(char *, size_t)' (aka 'int (*)(char *, unsigned long)') with an lvalue of type 'int (char *, int)': type mismatch at 2nd parameter ('size_t' (aka 'unsigned long') vs 'int') int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ ~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Compile failed inside link ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC -std=gnu++17 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,int) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib ============================================================================================= TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC -std=gnu++17 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib child config.utilities.missing 2.370215 ============================================================================================= TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:34) ============================================================================================= TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:49) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Defined make rule "shared_arch" with dependencies "shared_darwin" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).$(2).dylib" Defined make macro "SL_LINKER_FUNCTION" to "-dynamiclib -install_name $(call SONAME_FUNCTION,$(1),$(2)) -compatibility_version $(2) -current_version $(3) -single_module -multiply_defined suppress -undefined dynamic_lookup" Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ============================================================================================= TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:93) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ============================================================================================= TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:99) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ============================================================================================= TESTING: checkSymbolResolution from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:108) Checks that dladdr() works ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info)) return 0; ; return 0; } Defined "HAVE_DLADDR" to "1" Checking for header: cxxabi.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_CXXABI_H" to "1" child PETSc.options.sharedLibraries 0.170904 ============================================================================================= TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:39) Choose between real and complex numbers Scalar type is real ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_ISNORMAL" to "1" ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_ISNAN" to "1" ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_ISINF" to "1" ============================================================================================= TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:80) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c:4:10: fatal error: 'quadmath.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 0.536485 ============================================================================================= TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/mkdir...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/mkdir...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/mkdir...not found Checking for program /usr/local/opt/llvm/bin/mkdir...not found Checking for program /opt/anaconda2/bin/mkdir...not found Checking for program /usr/local/opt/texinfo/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /bin/mkdir...found Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ============================================================================================= TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/autoreconf...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/autoreconf...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/autoreconf...not found Checking for program /usr/local/opt/llvm/bin/autoreconf...not found Checking for program /opt/anaconda2/bin/autoreconf...not found Checking for program /usr/local/opt/texinfo/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...found Executing: ['/usr/local/bin/autoreconf'] autoreconf test successful! Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/libtoolize...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/libtoolize...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/libtoolize...not found Checking for program /usr/local/opt/llvm/bin/libtoolize...not found Checking for program /opt/anaconda2/bin/libtoolize...not found Checking for program /usr/local/opt/texinfo/bin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...found ============================================================================================= TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/bash...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/bash...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/bash...not found Checking for program /usr/local/opt/llvm/bin/bash...not found Checking for program /opt/anaconda2/bin/bash...not found Checking for program /usr/local/opt/texinfo/bin/bash...not found Checking for program /usr/local/bin/bash...not found Checking for program /usr/local/bin/bash...not found Checking for program /usr/local/bin/bash...not found Checking for program /usr/bin/bash...not found Checking for program /bin/bash...found Defined make macro "SHELL" to "/bin/bash" Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/sed...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/sed...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/sed...not found Checking for program /usr/local/opt/llvm/bin/sed...not found Checking for program /opt/anaconda2/bin/sed...not found Checking for program /usr/local/opt/texinfo/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Executing: /usr/bin/sed -i s/sed/sd/g "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.programs/sed1" Rejected SEDINPLACE cmd: /usr/bin/sed -i Executing: /usr/bin/sed -i "" s/sed/sd/g "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i "" Defined make macro "SEDINPLACE" to "/usr/bin/sed -i """ Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/mv...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/mv...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/mv...not found Checking for program /usr/local/opt/llvm/bin/mv...not found Checking for program /opt/anaconda2/bin/mv...not found Checking for program /usr/local/opt/texinfo/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/cp...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/cp...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/cp...not found Checking for program /usr/local/opt/llvm/bin/cp...not found Checking for program /opt/anaconda2/bin/cp...not found Checking for program /usr/local/opt/texinfo/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/grep...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/grep...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/grep...not found Checking for program /usr/local/opt/llvm/bin/grep...not found Checking for program /opt/anaconda2/bin/grep...not found Checking for program /usr/local/opt/texinfo/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/rm...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/rm...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/rm...not found Checking for program /usr/local/opt/llvm/bin/rm...not found Checking for program /opt/anaconda2/bin/rm...not found Checking for program /usr/local/opt/texinfo/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/diff...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/diff...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/diff...not found Checking for program /usr/local/opt/llvm/bin/diff...not found Checking for program /opt/anaconda2/bin/diff...not found Checking for program /usr/local/opt/texinfo/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.programs/diff1" "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /Users/markadams/Codes/petsc2/lib/petsc/bin/win32fe/ps...not found Unable to find programs: ['ps'] in listing of the specific search path: ['/usr/ucb', '/usr/usb'] Warning accessing /usr/ucb gives errors: [Errno 2] No such file or directory: '/usr/ucb' Warning accessing /usr/usb gives errors: [Errno 2] No such file or directory: '/usr/usb' Defined make macro "PYTHON" to "/Users/markadams/opt/miniconda2/envs/conda_env/bin/python" Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/m4...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/m4...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/m4...not found Checking for program /usr/local/opt/llvm/bin/m4...not found Checking for program /opt/anaconda2/bin/m4...not found Checking for program /usr/local/opt/texinfo/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 2.215037 ============================================================================================= TESTING: consistencyChecks from config.packages.make(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.make(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default ============================================================================================= TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:96) Check Guesses for GNU make Executing: gmake --version GNUMake check failed: Could not execute "['gmake --version']": /bin/sh: gmake: command not found Executing: make --version stdout: GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for i386-apple-darwin11.3.0 Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/make...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/make...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/make...not found Checking for program /usr/local/opt/llvm/bin/make...not found Checking for program /opt/anaconda2/bin/make...not found Checking for program /usr/local/opt/texinfo/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/make...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/make...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/make...not found Checking for program /usr/local/opt/llvm/bin/make...not found Checking for program /opt/anaconda2/bin/make...not found Checking for program /usr/local/opt/texinfo/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE_USER" to "make" ============================================================================================= ***** WARNING: You have a version of GNU make older than 4.0. It will work, but may not support all the parallel testing options. You can install the latest GNU make with your package manager, such as brew or macports, or use the --download-make option to get the latest GNU make ***** ============================================================================================= ============================================================================================= TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:150) Setup other GNU make stuff Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ============================================================================================= TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:197) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 8 cores: using make_np = 7 using user-provided make_np = 8 Defined make macro "MAKE_NP" to "8" Defined make macro "MAKE_TEST_NP" to "4" Defined make macro "MAKE_LOAD" to "12.0" Defined make macro "NPMAX" to "8" child config.packages.make 0.047122 ============================================================================================= TESTING: consistencyChecks from config.packages.hip(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hip(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.hip 0.000738 ============================================================================================= TESTING: consistencyChecks from config.packages.X(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.X(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.X 0.000784 ============================================================================================= TESTING: consistencyChecks from config.packages.hwloc(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.hwloc 0.001161 ============================================================================================= TESTING: consistencyChecks from config.packages.thrust(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.thrust 0.000999 ============================================================================================= TESTING: consistencyChecks from config.packages.cuda(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.cuda 0.009155 ============================================================================================= TESTING: consistencyChecks from config.packages.OpenMPI(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.000811 ============================================================================================= TESTING: consistencyChecks from config.packages.MPICH(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.000988 ============================================================================================= TESTING: consistencyChecks from config.packages.MPI(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:786) ================================================================================== Checking for a functional MPI Checking for library in User specified root directory MPI: [] Contents of /usr/local/Cellar/open-mpi/4.1.1_2: ['INSTALL_RECEIPT.json', 'LICENSE', 'bin', '.brew', 'AUTHORS', 'include', 'etc', 'README', 'NEWS', 'lib', 'share'] Contents /usr/local/Cellar/open-mpi/4.1.1_2/: ['INSTALL_RECEIPT.json', 'LICENSE', 'bin', '.brew', 'AUTHORS', 'include', 'etc', 'README', 'NEWS', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Checking for optional headers [] in User specified root directory MPI: ['/usr/local/Cellar/open-mpi/4.1.1_2/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/Cellar/open-mpi/4.1.1_2/include'] Found header files [] in ['/usr/local/Cellar/open-mpi/4.1.1_2/include'] Checking for headers ['mpi.h'] in User specified root directory MPI: ['/usr/local/Cellar/open-mpi/4.1.1_2/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/usr/local/Cellar/open-mpi/4.1.1_2/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/Cellar/open-mpi/4.1.1_2/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['mpi.h'] in ['/usr/local/Cellar/open-mpi/4.1.1_2/include'] Defined "HAVE_MPI_F90MODULE_VISIBILITY" to "1" ============================================================================================= TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:602) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:4:25: error: use of undeclared identifier 'I_MPI_VERSION' const char *mpich_ver = I_MPI_VERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'I_MPI_NUMVERSION' int mpich_ver = I_MPI_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'MVAPICH2_NUMVERSION' int mpich_ver = MVAPICH2_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'MPICH_NUMVERSION' int mpich_ver = MPICH_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:4:1: error: unknown type name 'MPI_NEC_Function' MPI_NEC_Function f = MPI_NEC_FUNCTION_NULL; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:4:22: error: use of undeclared identifier 'MPI_NEC_FUNCTION_NULL' MPI_NEC_Function f = MPI_NEC_FUNCTION_NULL; ^ 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include MPI_NEC_Function f = MPI_NEC_FUNCTION_NULL; int main() { ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Defined "HAVE_OMPI_MAJOR_VERSION" to "4" Defined "HAVE_OMPI_MINOR_VERSION" to "1" Defined "HAVE_OMPI_RELEASE_VERSION" to "1" Executing: uname -s stdout: Darwin ============================================================================================= TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:379) Check for functions added to the interface in MPI-2 ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:35: warning: if statement has empty body [-Wempty-body] int flag;if (MPI_Finalized(&flag)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:35: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_MPI_FINALIZED" to "1" ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:71: warning: if statement has empty body [-Wempty-body] if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:71: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_MPI_IN_PLACE" to "1" ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:7:121: warning: if statement has empty body [-Wempty-body] if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:7:121: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={MPI_INT,MPI_DOUBLE}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:1: warning: 'MPI_Comm_errhandler_fn' is deprecated: MPI_Comm_errhandler_fn was deprecated in MPI-2.2; use MPI_Comm_errhandler_function instead [-Wdeprecated-declarations] MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ^ /usr/local/Cellar/open-mpi/4.1.1_2/include/mpi.h:487:9: note: 'MPI_Comm_errhandler_fn' has been explicitly marked deprecated here __mpi_interface_deprecated__("MPI_Comm_errhandler_fn was deprecated in MPI-2.2; use MPI_Comm_errhandler_function instead"); ^ /usr/local/Cellar/open-mpi/4.1.1_2/include/mpi.h:279:78: note: expanded from macro '__mpi_interface_deprecated__' # define __mpi_interface_deprecated__(msg) __attribute__((__deprecated__(msg))) ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:131: warning: if statement has empty body [-Wempty-body] MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:131: note: put the semicolon on a separate line to silence this warning 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:63: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:63: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:49: warning: if statement has empty body [-Wempty-body] if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:49: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_MPI_REDUCE_LOCAL" to "1" ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:102: warning: if statement has empty body [-Wempty-body] char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:102: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_MPI_WIN_CREATE" to "1" ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:90: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:90: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:85: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ^~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ^ = NULL 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_MPI_ONE_SIDED" to "1" ============================================================================================= TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:426) Check for functions added to the interface in MPI-3 ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:7:112: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:7:112: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:8:111: warning: if statement has empty body [-Wempty-body] if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:8:111: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:9:82: warning: if statement has empty body [-Wempty-body] if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:9:82: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:7:104: warning: if statement has empty body [-Wempty-body] if (MPI_Win_allocate(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:7:104: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:8:61: warning: if statement has empty body [-Wempty-body] if (MPI_Win_attach(win,baseptr,size)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:8:61: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:9:86: warning: if statement has empty body [-Wempty-body] if (MPI_Win_create_dynamic(MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:9:86: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Win_allocate(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_attach(win,baseptr,size)); if (MPI_Win_create_dynamic(MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_MPI_FEATURE_DYNAMIC_WINDOW" to "1" ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:7:96: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:7:96: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:8:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:8:110: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:9:96: warning: if statement has empty body [-Wempty-body] if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:9:96: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:10:109: warning: if statement has empty body [-Wempty-body] if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:10:109: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:11:97: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:11:97: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:12:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:12:110: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:13:96: warning: if statement has empty body [-Wempty-body] if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:13:96: note: put the semicolon on a separate line to silence this warning 7 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:8:145: warning: if statement has empty body [-Wempty-body] if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:8:145: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:9:89: warning: if statement has empty body [-Wempty-body] if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:9:89: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:10:95: warning: if statement has empty body [-Wempty-body] if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:10:95: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:7:3: error: This OpenMPI is not CUDA-aware #error This OpenMPI is not CUDA-aware ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MPIX_CUDA_AWARE_SUPPORT) && MPIX_CUDA_AWARE_SUPPORT #else #error This OpenMPI is not CUDA-aware #endif int main() { ; return 0; } ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:104: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:104: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:99: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ = NULL 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_MPI_GET_ACCUMULATE" to "1" ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:84: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ = NULL 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_MPI_RGET" to "1" ============================================================================================= TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:188) Checking for location of mpiexec Checking for program /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpiexec...found Running Executable with threads to time it out at 60 Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpiexec -help all stdout: mpiexec (OpenRTE) 4.1.1 Usage: mpiexec [OPTION]... [PROGRAM]... Start the given program using Open RTE -allow-run-as-root|--allow-run-as-root Allow execution as root (STRONGLY DISCOURAGED) -am Aggregate MCA parameter set file list --app Provide an appfile; ignore all other command line options --bind-to Policy for binding processes. Allowed values: none, hwthread, core, l1cache, l2cache, l3cache, socket, numa, board, cpu-list ("none" is the default when oversubscribed, "core" is the default when np<=2, and "socket" is the default when np>2). Allowed qualifiers: overload-allowed, if-supported, ordered -bind-to-core|--bind-to-core Bind processes to cores -bind-to-socket|--bind-to-socket Bind processes to sockets -bycore|--bycore Whether to map and rank processes round-robin by core -bynode|--bynode Whether to map and rank processes round-robin by node -byslot|--byslot Whether to map and rank processes round-robin by slot -c|-np|--np Number of processes to run -cf|--cartofile Provide a cartography file -continuous|--continuous Job is to run until explicitly terminated -cpu-list|--cpu-list List of processor IDs to bind processes to [default=NULL] -cpu-set|--cpu-set Comma-separated list of ranges specifying logical cpus allocated to this job [default: none] -cpus-per-proc|--cpus-per-proc Number of cpus to use for each process [default=1] -cpus-per-rank|--cpus-per-rank Synonym for cpus-per-proc -d|-debug-devel|--debug-devel Enable debugging of OpenRTE -debug|--debug Invoke the user-level debugger indicated by the orte_base_user_debugger MCA parameter -debug-daemons|--debug-daemons Enable debugging of any OpenRTE daemons used by this application -debug-daemons-file|--debug-daemons-file Enable debugging of any OpenRTE daemons used by this application, storing output in files -debugger|--debugger Sequence of debuggers to search for when "--debug" is used -default-hostfile|--default-hostfile Provide a default hostfile -disable-recovery|--disable-recovery Disable recovery (resets all recovery options to off) -display-allocation|--display-allocation Display the allocation being used by this job -display-devel-allocation|--display-devel-allocation Display a detailed list (mostly intended for developers) of the allocation being used by this job -display-devel-map|--display-devel-map Display a detailed process map (mostly intended for developers) just before launch -display-diffable-map|--display-diffable-map Display a diffable process map (mostly intended for developers) just before launch -display-map|--display-map Display the process map just before launch -display-topo|--display-topo Display the topology as part of the process map (mostly intended for developers) just before launch -do-not-launch|--do-not-launch Perform all necessary operations to prepare to launch the application, but do not actually launch it -do-not-resolve|--do-not-resolve Do not attempt to resolve interfaces -dvm|--dvm Create a persistent distributed virtual machine (DVM) -enable-instant-on-support|--enable-instant-on-support Enable PMIx-based instant on launch support (experimental) -enable-recovery|--enable-recovery Enable recovery from process failure [Default = disabled] -fwd-mpirun-port|--fwd-mpirun-port Forward mpirun port to compute node daemons so all will use it -get-stack-traces|--get-stack-traces Get stack traces of all application procs on timeout -gmca|--gmca Pass global MCA parameters that are applicable to all contexts (arg0 is the parameter name; arg1 is the parameter value) -h|--help This help message -H|-host|--host List of hosts to invoke processes on -hnp|--hnp Specify the URI of the HNP, or the name of the file (specified as file:filename) that contains that info -hostfile|--hostfile Provide a hostfile -index-argv-by-rank|--index-argv-by-rank Uniquely index argv[0] for each process using its rank -launch-agent|--launch-agent Command used to start processes on remote nodes (default: orted) -leave-session-attached|--leave-session-attached Enable debugging of OpenRTE -machinefile|--machinefile Provide a hostfile --map-by Mapping Policy [slot | hwthread | core | socket (default) | numa | board | node] -max-restarts|--max-restarts Max number of times to restart a failed process -max-vm-size|--max-vm-size Number of processes to run -mca|--mca Pass context-specific MCA parameters; they are considered global if --gmca is not used and only one context is specified (arg0 is the parameter name; arg1 is the parameter value) -merge-stderr-to-stdout|--merge-stderr-to-stdout Merge stderr to stdout for each process -N Launch n processes per node on all allocated nodes (synonym for 'map-by node') -n|--n Number of processes to run -nolocal|--nolocal Do not run any MPI applications on the local node -nooversubscribe|--nooversubscribe Nodes are not to be oversubscribed, even if the system supports such operation --noprefix Disable automatic --prefix behavior -novm|--novm Execute without creating an allocation-spanning virtual machine (only start daemons on nodes hosting application procs) -npernode|--npernode Launch n processes per node on all allocated nodes -npersocket|--npersocket Launch n processes per socket on all allocated nodes -ompi-server|--ompi-server Specify the URI of the publish/lookup server, or the name of the file (specified as file:filename) that contains that info -output-filename|--output-filename Redirect output from application processes into filename/job/rank/std[out,err,diag]. A relative path value will be converted to an absolute path -output-proctable|--output-proctable Output the debugger proctable after launch -oversubscribe|--oversubscribe Nodes are allowed to be oversubscribed, even on a managed system, and overloading of processing elements -path|--path PATH to be used to look for executables to start processes -pernode|--pernode Launch one process per available node -personality|--personality Comma-separated list of programming model, languages, and containers being used (default="ompi") --ppr Comma-separated list of number of processes on a given resource type [default: none] --prefix Prefix where Open MPI is installed on remote nodes --preload-files Preload the comma separated list of files to the remote machines current working directory before starting the remote process. -q|--quiet Suppress helpful messages --rank-by Ranking Policy [slot (default) | hwthread | core | socket | numa | board | node] -report-bindings|--report-bindings Whether to report process bindings to stderr -report-child-jobs-separately|--report-child-jobs-separately Return the exit status of the primary job only -report-events|--report-events Report events to a tool listening at the specified URI -report-pid|--report-pid Printout pid on stdout [-], stderr [+], or a file [anything else] -report-state-on-timeout|--report-state-on-timeout Report all job and process states upon timeout -report-uri|--report-uri Printout URI on stdout [-], stderr [+], or a file [anything else] -rf|--rankfile Provide a rankfile file -s|--preload-binary Preload the binary on the remote machine before starting the remote process. -set-cwd-to-session-dir|--set-cwd-to-session-dir Set the working directory of the started processes to their session directory -show-progress|--show-progress Output a brief periodic report on launch progress -stdin|--stdin Specify procs to receive stdin [rank, all, none] (default: 0, indicating rank 0) -tag-output|--tag-output Tag all output with [job,rank] -timeout|--timeout Timeout the job after the specified number of seconds -timestamp-output|--timestamp-output Timestamp all application process output -tune Application profile options file list -tv|--tv Deprecated backwards compatibility flag; synonym for "--debug" -use-hwthread-cpus|--use-hwthread-cpus Use hardware threads as independent cpus -use-regexp|--use-regexp Use regular expressions for launch -v|--verbose Be verbose -V|--version Print version and exit -wd|--wd Synonym for --wdir -wdir|--wdir Set the working directory of the started processes -x Export an environment variable, optionally specifying a value (e.g., "-x foo" exports the environment variable foo and takes its value from the current environment; "-x foo=bar" exports the environment variable name foo and sets its value to "bar" in the started processes) -xml|--xml Provide all output in XML format -xml-file|--xml-file Provide all output in XML format to the specified file -xterm|--xterm Create a new xterm window and display output from the specified ranks there For additional mpirun arguments, run 'mpirun --help ' The following categories exist: general (Defaults to this option), debug, output, input, mapping, ranking, binding, devel (arguments useful to OMPI Developers), compatibility (arguments supported for backwards compatibility), launch (arguments to modify launch options), and dvm (Distributed Virtual Machine arguments). Report bugs to http://www.open-mpi.org/community/help/ Checking for program /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpiexec...found Running Executable with threads to time it out at 120 Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpiexec -n 1 printenv stdout: OMPI_MCA_pmix=^s1,s2,cray,isolated PMIX_MCA_mca_base_component_show_load_errors=1 OMPI_COMMAND=printenv OMPI_MCA_orte_precondition_transports=9c46c8320456097d-bff6f04bd3c1e590 GIT_PS1_SHOWDIRTYSTATE=1 PIP_DOWNLOAD_CACHE=/Users/markadams/.pip/cache TERM_PROGRAM=iTerm.app SHELL=/bin/bash TERM=xterm-256color CH_TIMER=FALSE TMPDIR=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/ PETSC_ARCH=arch-macosx-gnu-kokkos-g CONDA_SHLVL=2 TERM_PROGRAM_VERSION=3.4.6 CONDA_PROMPT_MODIFIER=(conda_env) TERM_SESSION_ID=w0t0p0:938F0E9B-0158-4613-A7D2-CD29B26875DC USER=markadams SVN_EDITOR=vi COMMAND_MODE=unix2003 CH_TIMER_SAMPLE=60000 XP_LICENSE_INTERFACE=en0 CONDA_EXE=/usr/local/Caskroom/miniconda/base/bin/conda SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.ZQIRksRxXR/Listeners CPATH=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0 COLUMNS=297 _CE_CONDA= CONDA_PREFIX_1=/usr/local/Caskroom/miniconda/base PATH=/usr/local/Cellar/open-mpi/4.1.1_2/bin:/usr/local/Cellar/open-mpi/4.1.1_2/bin:/Users/markadams/opt/miniconda2/envs/conda_env/bin:/usr/local/Caskroom/miniconda/base/condabin:/Library/Frameworks/Python.framework/Versions/3.9/bin:/usr/local/opt/llvm/bin:/opt/anaconda2/bin:/usr/local/opt/texinfo/bin:/usr/local/bin:/usr/local/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/Apple/usr/bin _=/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpiexec LaunchInstanceID=3F21C051-D49A-4767-BCDB-5B38013F0662 __CFBundleIdentifier=com.googlecode.iterm2 DATAFILESPATH=/Users/markadams/matrices CONDA_PREFIX=/Users/markadams/opt/miniconda2/envs/conda_env PWD=/Users/markadams/Codes/petsc2 DBUS_LAUNCHD_SESSION_BUS_SOCKET=/private/tmp/com.apple.launchd.ZDOKfaWA53/unix_domain_listener LANG=en_US.UTF-8 ITERM_PROFILE=Default XPC_FLAGS=0x0 MACHINE=darwin LINES=111 XPC_SERVICE_NAME=0 _CE_M= COLORFGBG=0;15 HOME=/Users/markadams SHLVL=2 CH_OUTPUT_INTERVAL=1000 LC_TERMINAL_VERSION=3.4.6 SLEPC_DIR=/Users/markadams/Codes/slepc ITERM_SESSION_ID=w0t0p0:938F0E9B-0158-4613-A7D2-CD29B26875DC LOGNAME=markadams CONDA_PYTHON_EXE=/usr/local/Caskroom/miniconda/base/bin/python CVS_RSH=ssh GIT_PS1_SHOWUPSTREAM=auto OMP_NUM_THREADS=1 CONDA_DEFAULT_ENV=conda_env ARCHFLAGS=-arch x86_64 LC_TERMINAL=iTerm2 SECURITYSESSIONID=186a3 PETSC_DIR=/Users/markadams/Codes/petsc COLORTERM=truecolor ZES_ENABLE_SYSMAN=1 IPATH_NO_BACKTRACE=1 HFI_NO_BACKTRACE=1 LD_LIBRARY_PATH=/usr/local/Cellar/open-mpi/4.1.1_2/lib:/usr/local/Cellar/open-mpi/4.1.1_2/lib OMPI_MCA_orte_local_daemon_uri=3563388928.0;tcp://192.168.4.32:58598 OMPI_MCA_orte_hnp_uri=3563388928.0;tcp://192.168.4.32:58598 OMPI_MCA_mpi_oversubscribe=0 OMPI_MCA_orte_app_num=0 OMPI_UNIVERSE_SIZE=4 OMPI_MCA_orte_num_nodes=1 OMPI_MCA_shmem_RUNTIME_QUERY_hint=mmap OMPI_MCA_orte_bound_at_launch=1 OMPI_MCA_ess=^singleton OMPI_MCA_orte_ess_num_procs=1 OMPI_COMM_WORLD_SIZE=1 OMPI_COMM_WORLD_LOCAL_SIZE=1 OMPI_MCA_orte_tmpdir_base=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/ OMPI_MCA_orte_top_session_dir=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//ompi.MarksMac-302.501 OMPI_MCA_orte_jobfam_session_dir=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//ompi.MarksMac-302.501/pid.23976 OMPI_NUM_APP_CTX=1 OMPI_FIRST_RANKS=0 OMPI_APP_CTX_NUM_PROCS=1 OMPI_MCA_initial_wdir=/Users/markadams/Codes/petsc2 OMPI_MCA_orte_launch=1 PMIX_NAMESPACE=3563388929 PMIX_RANK=0 PMIX_SERVER_URI3=3563388928.0;tcp4://127.0.0.1:58597 PMIX_SERVER_URI2=3563388928.0;tcp4://127.0.0.1:58597 PMIX_SERVER_URI21=3563388928.0;tcp4://127.0.0.1:58597 PMIX_SECURITY_MODE=native PMIX_PTL_MODULE=tcp,usock PMIX_BFROP_BUFFER_TYPE=PMIX_BFROP_BUFFER_NON_DESC PMIX_GDS_MODULE=ds21,ds12,hash PMIX_SERVER_TMPDIR=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//ompi.MarksMac-302.501/pid.23976 PMIX_SYSTEM_TMPDIR=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/ PMIX_DSTORE_21_BASE_PATH=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//ompi.MarksMac-302.501/pid.23976/pmix_dstor_ds21_23976 PMIX_DSTORE_ESH_BASE_PATH=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//ompi.MarksMac-302.501/pid.23976/pmix_dstor_ds12_23976 PMIX_HOSTNAME=MarksMac-302.local PMIX_VERSION=3.2.3 OMPI_MCA_ess_base_jobid=3563388929 OMPI_MCA_ess_base_vpid=0 OMPI_COMM_WORLD_RANK=0 OMPI_COMM_WORLD_LOCAL_RANK=0 OMPI_COMM_WORLD_NODE_RANK=0 OMPI_MCA_orte_ess_node_rank=0 PMIX_ID=3563388929.0 OMPI_FILE_LOCATION=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//ompi.MarksMac-302.501/pid.23976/0/0 Defined "HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE" to "OMP" Defined make macro "MPIEXEC" to "/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpiexec --oversubscribe" Checking for program /usr/libexec/ApplicationFirewall/socketfilterfw...found Defined make macro "SOCKETFILTERFW" to "/usr/libexec/ApplicationFirewall/socketfilterfw" Running Executable with threads to time it out at 60 Executing: /usr/libexec/ApplicationFirewall/socketfilterfw --getglobalstate stdout: Firewall is enabled. (State = 1) Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/hostname...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/hostname...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/hostname...not found Checking for program /usr/local/opt/llvm/bin/hostname...not found Checking for program /opt/anaconda2/bin/hostname...not found Checking for program /usr/local/opt/texinfo/bin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/bin/hostname...not found Checking for program /bin/hostname...found Defined make macro "HOSTNAME" to "hostname" ======== Checking running linked program ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest to see if it can be run Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpiexec --oversubscribe -n 1 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest Running Executable with threads to time it out at 120 Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpiexec --oversubscribe -n 1 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest ============================================================================================= TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:483) Checking for MPI Datatype handles ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_LONG_DOUBLE" to "1" ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_INT64_T" to "1" ============================================================================================= TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:530) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_MPI_SGI_barrier", referenced from: __check_MPI_SGI_barrier in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_MPI_SGI_barrier", referenced from: __check_MPI_SGI_barrier in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_MPI_SGI_barrier", referenced from: __check_MPI_SGI_barrier in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): SGI MPI test failure ============================================================================================= TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:540) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O -fPIC -std=gnu++17 -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib ============================================================================================= TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:556) Make sure fortran include [mpif.h] and library symbols are found ============================================================================================= TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:578) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:7:48: warning: if statement has empty body [-Wempty-body] if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:7:48: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:12:54: warning: if statement has empty body [-Wempty-body] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:12:54: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:14:102: warning: if statement has empty body [-Wempty-body] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:14:102: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:18:61: warning: if statement has empty body [-Wempty-body] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:18:61: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:20:101: warning: if statement has empty body [-Wempty-body] if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:20:101: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:22:74: warning: if statement has empty body [-Wempty-body] if (MPI_File_close(&fh)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:22:74: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:18:55: warning: variable 'info' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:17:14: note: initialize the variable 'info' to silence this warning MPI_Info info; ^ = NULL /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:12:24: warning: variable 'fh' is uninitialized when used here [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:9:61: note: initialize the variable 'fh' to silence this warning MPI_File fh; ^ = NULL /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:18:27: warning: variable 'disp' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:16:65: note: initialize the variable 'disp' to silence this warning MPI_Offset disp; ^ = 0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:14:76: warning: variable 'buf' is uninitialized when used here [-Wuninitialized] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:10:10: note: initialize the variable 'buf' to silence this warning void *buf; ^ = NULL 10 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_MPIIO" to "1" ============================================================================================= TESTING: findMPIIncludeAndLib from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:691) Find MPI include paths and libraries from "mpicc -show" or Cray "cc --cray-print-opts=cflags/libs" and save. ============================================================================================= TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:761) Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_DUP;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_CONTIGUOUS;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_NAMED;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ============================================================================================= TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" petscpkgver(MPI_VERSION); Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/usr/local/Cellar/open-mpi/4.1.1_2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.MPI 5.427835 ============================================================================================= TESTING: consistencyChecks from config.packages.zstd(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.001289 ============================================================================================= TESTING: consistencyChecks from config.packages.yaml(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.001011 ============================================================================================= TESTING: consistencyChecks from config.packages.sycl(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sycl(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.sycl 0.000740 ============================================================================================= TESTING: consistencyChecks from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:31) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.001225 ============================================================================================= TESTING: consistencyChecks from config.packages.sprng(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.000776 Not a clone of PETSc or no Fortran compiler or fortran-bindings disabled, don't need Sowing child config.packages.sowing 0.000329 ============================================================================================= TESTING: consistencyChecks from config.packages.revolve(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.001208 ============================================================================================= TESTING: consistencyChecks from config.packages.radau5(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.001186 ============================================================================================= TESTING: consistencyChecks from config.packages.pami(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.001025 ============================================================================================= TESTING: consistencyChecks from config.packages.opengles(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.000996 ============================================================================================= TESTING: consistencyChecks from config.packages.opencl(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.000700 ============================================================================================= TESTING: consistencyChecks from config.packages.muparser(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.000772 ============================================================================================= TESTING: consistencyChecks from config.packages.mpe(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.000865 ============================================================================================= TESTING: consistencyChecks from config.packages.memkind(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.000832 ============================================================================================= TESTING: consistencyChecks from config.packages.libmesh(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:69) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.001713 ============================================================================================= TESTING: consistencyChecks from config.packages.moose(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.000980 ============================================================================================= TESTING: consistencyChecks from config.packages.libjpeg(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.000782 Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/lgrind...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/lgrind...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/lgrind...not found Checking for program /usr/local/opt/llvm/bin/lgrind...not found Checking for program /opt/anaconda2/bin/lgrind...not found Checking for program /usr/local/opt/texinfo/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /bin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /sbin/lgrind...not found Checking for program /Library/Apple/usr/bin/lgrind...not found Checking for program /Users/markadams/Codes/petsc2/lib/petsc/bin/win32fe/lgrind...not found child config.packages.lgrind 0.000565 ============================================================================================= TESTING: consistencyChecks from config.packages.gsl(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.gsl(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.gsl 0.000814 child config.packages.gmsh 0.000113 ============================================================================================= TESTING: consistencyChecks from config.packages.gmp(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.000766 ============================================================================================= TESTING: consistencyChecks from config.packages.mpfr(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.000919 ============================================================================================= TESTING: consistencyChecks from config.packages.giflib(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.000801 ============================================================================================= TESTING: consistencyChecks from config.packages.cub(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cub(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.cub 0.000961 ============================================================================================= TESTING: consistencyChecks from config.packages.ctetgen(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.ctetgen 0.001135 ============================================================================================= TESTING: consistencyChecks from config.packages.concurrencykit(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.000793 ============================================================================================= TESTING: consistencyChecks from config.packages.cams(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cams(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.cams 0.000852 ============================================================================================= TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:30) Looking for default C2html executable Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/c2html...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/c2html...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/c2html...not found Checking for program /usr/local/opt/llvm/bin/c2html...not found Checking for program /opt/anaconda2/bin/c2html...not found Checking for program /usr/local/opt/texinfo/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /sbin/c2html...not found Checking for program /Library/Apple/usr/bin/c2html...not found Checking for program /Users/markadams/Codes/petsc2/lib/petsc/bin/win32fe/c2html...not found child config.packages.c2html 0.001382 ============================================================================================= TESTING: consistencyChecks from config.packages.boost(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.000772 ============================================================================================= TESTING: consistencyChecks from config.packages.silo(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.000761 ============================================================================================= TESTING: consistencyChecks from config.packages.Random123(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.000865 ============================================================================================= TESTING: consistencyChecks from config.packages.PARTY(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.000786 ============================================================================================= TESTING: consistencyChecks from config.packages.NVSHMEM(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.NVSHMEM(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.NVSHMEM 0.000779 ============================================================================================= TESTING: consistencyChecks from config.packages.Matlab(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.000697 ============================================================================================= TESTING: consistencyChecks from config.packages.MatlabEngine(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.000780 ============================================================================================= TESTING: consistencyChecks from config.packages.Mathematica(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.000735 ============================================================================================= TESTING: consistencyChecks from config.packages.regex(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:928) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Checking for optional headers [] in Compiler specific search REGEX: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['regex.h'] in Compiler specific search REGEX: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['regex.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.regex 0.247083 ============================================================================================= TESTING: consistencyChecks from config.packages.libceed(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.001402 Defined "PYTHON_EXE" to ""/Users/markadams/opt/miniconda2/envs/conda_env/bin/python"" Executing: /Users/markadams/opt/miniconda2/envs/conda_env/bin/python -c "import Cython" Executing: /Users/markadams/opt/miniconda2/envs/conda_env/bin/python -c "import numpy" child config.packages.python 0.677570 ============================================================================================= TESTING: consistencyChecks from config.packages.petsc4py(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:129) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] Defined make rule "petsc4pytest" with dependencies "" and code [] child config.packages.petsc4py 0.003684 ============================================================================================= TESTING: consistencyChecks from config.packages.mpi4py(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.mpi4py 0.001356 ============================================================================================= TESTING: consistencyChecks from config.packages.slepc(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:95) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.001321 ============================================================================================= TESTING: consistencyChecks from config.packages.opengl(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.001087 ============================================================================================= TESTING: consistencyChecks from config.packages.glut(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.001091 ============================================================================================= TESTING: consistencyChecks from config.packages.GLVis(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.GLVis(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.GLVis 0.001763 ============================================================================================= TESTING: consistencyChecks from config.packages.CoDiPack(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.001076 ============================================================================================= TESTING: consistencyChecks from config.packages.adblaslapack(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.001401 child config.packages.cxxlibs 0.000027 ============================================================================================= TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:51) Looking for default CMake executable Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/cmake...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/cmake...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/cmake...not found Checking for program /usr/local/opt/llvm/bin/cmake...not found Checking for program /opt/anaconda2/bin/cmake...not found Checking for program /usr/local/opt/texinfo/bin/cmake...not found Checking for program /usr/local/bin/cmake...found Defined make macro "CMAKE" to "/usr/local/bin/cmake" Looking for default CTest executable Checking for program /Users/markadams/opt/miniconda2/envs/conda_env/bin/ctest...not found Checking for program /usr/local/Caskroom/miniconda/base/condabin/ctest...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/ctest...not found Checking for program /usr/local/opt/llvm/bin/ctest...not found Checking for program /opt/anaconda2/bin/ctest...not found Checking for program /usr/local/opt/texinfo/bin/ctest...not found Checking for program /usr/local/bin/ctest...found Defined make macro "CTEST" to "/usr/local/bin/ctest" Executing: /usr/local/bin/cmake --version stdout: cmake version 3.22.1 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.22.1 child config.packages.cmake 0.043026 ============================================================================================= TESTING: consistencyChecks from config.packages.unittestcpp(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.002635 ============================================================================================= TESTING: consistencyChecks from config.packages.googletest(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.002630 ============================================================================================= TESTING: consistencyChecks from config.packages.opencascade(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opencascade(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.opencascade 0.003677 ============================================================================================= TESTING: consistencyChecks from config.packages.eigen(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.002262 ============================================================================================= TESTING: consistencyChecks from config.packages.szlib(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.001324 ============================================================================================= TESTING: consistencyChecks from config.packages.zlib(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.zlib(config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:928) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional zlib Checking for library in Compiler specific search ZLIB: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [compress uncompress] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } int main() { _check_compress(); _check_uncompress();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_compress", referenced from: __check_compress in conftest.o "_uncompress", referenced from: __check_uncompress in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_compress", referenced from: __check_compress in conftest.o "_uncompress", referenced from: __check_uncompress in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_compress", referenced from: __check_compress in conftest.o "_uncompress", referenced from: __check_uncompress in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for library in Compiler specific search ZLIB: ['libz.a'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [compress uncompress] in library ['libz.a'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } int main() { _check_compress(); _check_uncompress();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lz -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Checking for optional headers [] in Compiler specific search ZLIB: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['zlib.h'] in Compiler specific search ZLIB: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['zlib.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['zlib.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.zlib(config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "zlib.h" petscpkgver(ZLIB_VERSION); Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.zlib /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.zlib/conftest.c For zlib need <= 1.2.11 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.zlib(config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.zlib 0.853273 child config.packages.mathlib 0.000019 ============================================================================================= TESTING: consistencyChecks from config.packages.tetgen(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.tetgen 0.001551 ============================================================================================= TESTING: consistencyChecks from config.packages.tchem(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.001458 ============================================================================================= TESTING: consistencyChecks from config.packages.saws(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.001144 ============================================================================================= TESTING: consistencyChecks from config.packages.libpng(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.000911 ============================================================================================= TESTING: consistencyChecks from config.packages.hcephes(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hcephes(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.hcephes 0.000881 ============================================================================================= TESTING: consistencyChecks from config.packages.combblas(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.000901 ============================================================================================= TESTING: consistencyChecks from config.packages.Triangle(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.Triangle 0.000888 ============================================================================================= TESTING: consistencyChecks from config.packages.metis(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.metis(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.metis 0.000993 ============================================================================================= TESTING: consistencyChecks from config.packages.pragmatic(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic 0.000931 ============================================================================================= TESTING: consistencyChecks from config.packages.parmetis(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.parmetis 0.001022 ============================================================================================= TESTING: consistencyChecks from config.packages.Chaco(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.Chaco 0.001355 Executing: uname -s stdout: Darwin ============================================================================================= TESTING: consistencyChecks from config.packages.hdf5(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.hdf5 0.015897 ============================================================================================= TESTING: consistencyChecks from config.packages.med(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.med(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.med 0.000907 ============================================================================================= TESTING: consistencyChecks from config.packages.cgns(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.cgns 0.000798 ============================================================================================= TESTING: consistencyChecks from config.packages.ascem-io(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io 0.000998 ============================================================================================= TESTING: consistencyChecks from config.packages.pflotran(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.pflotran 0.000908 ============================================================================================= TESTING: consistencyChecks from config.packages.alquimia(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.alquimia 0.001093 ============================================================================================= TESTING: consistencyChecks from config.packages.SAMRAI(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SAMRAI(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI 0.000963 child config.packages.flibs 0.000035 ============================================================================================= TESTING: consistencyChecks from config.packages.pnetcdf(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.pnetcdf 0.000930 ============================================================================================= TESTING: consistencyChecks from config.packages.netcdf(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.netcdf 0.000889 ============================================================================================= TESTING: consistencyChecks from config.packages.exodusii(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.exodusii 0.000848 ============================================================================================= TESTING: consistencyChecks from config.packages.fblaslapack(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.fblaslapack 0.000945 ============================================================================================= TESTING: consistencyChecks from config.packages.pthread(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.pthread(config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:20) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Checking for optional headers [] in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.zlib -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['pthread.h'] in [] ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread/conftest.c:6:1: error: use of undeclared identifier 'pthread_barrier_t' pthread_barrier_t *a; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread/conftest.c:6:20: error: use of undeclared identifier 'a' pthread_barrier_t *a; ^ 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread/conftest.c:6:1: error: use of undeclared identifier 'cpu_set_t' cpu_set_t *a; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread/conftest.c:6:12: error: use of undeclared identifier 'a' cpu_set_t *a; ^ 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.zlib -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSCTL_H" to "1" ============================================================================================= TESTING: checkVersion from config.packages.pthread(config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.pthread 0.582041 ============================================================================================= TESTING: consistencyChecks from config.packages.egads(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.001423 ============================================================================================= TESTING: consistencyChecks from config.packages.PTScotch(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.PTScotch 0.000940 ============================================================================================= TESTING: consistencyChecks from config.packages.mmg(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mmg(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.mmg 0.000918 ============================================================================================= TESTING: consistencyChecks from config.packages.parmmg(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.parmmg(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.parmmg 0.000922 ============================================================================================= TESTING: consistencyChecks from config.packages.Zoltan(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.Zoltan 0.001174 ============================================================================================= TESTING: consistencyChecks from config.packages.ADIOS(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADIOS(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS 0.001092 ============================================================================================= TESTING: consistencyChecks from config.packages.openmp(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.openmp 0.000842 ============================================================================================= TESTING: consistencyChecks from config.packages.viennacl(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.viennacl 0.000932 ============================================================================================= TESTING: consistencyChecks from config.packages.ColPack(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ColPack(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.ColPack 0.000954 ============================================================================================= TESTING: consistencyChecks from config.packages.ADOLC(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.001044 ============================================================================================= TESTING: consistencyChecks from config.packages.openblas(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openblas(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.openblas 0.001081 ============================================================================================= TESTING: consistencyChecks from config.packages.blis(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.blis(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.blis 0.001535 ============================================================================================= TESTING: consistencyChecks from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.f2cblaslapack 0.001011 ============================================================================================= TESTING: consistencyChecks from config.packages.BlasLapack(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.BlasLapack(config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:487) ================================================================================ Checking for BLAS and LAPACK in Default compiler libraries ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling unchanged on BLAS/LAPACK Checking for functions [ddot] in library [''] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ddot", referenced from: __check_ddot in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_ddot", referenced from: __check_ddot in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_ddot", referenced from: __check_ddot in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library [''] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ddot_", referenced from: __check_ddot_ in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_ddot_", referenced from: __check_ddot_ in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_ddot_", referenced from: __check_ddot_ in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for BLAS and LAPACK in Default NEC ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling unchanged on BLAS/LAPACK Checking for functions [ddot] in library ['libblas_sequential.a'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lblas_sequential -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lblas_sequential clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lblas_sequential clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lblas_sequential clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['libblas_sequential.a'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lblas_sequential -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lblas_sequential clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lblas_sequential clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lblas_sequential clang: error: linker command failed with exit code 1 (use -v to see invocation): Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for BLAS and LAPACK in Default NEC ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling unchanged on BLAS/LAPACK Checking for functions [ddot] in library ['libblas_sequential.a'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lblas_sequential -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lblas_sequential clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lblas_sequential clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lblas_sequential clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['libblas_sequential.a'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lblas_sequential -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lblas_sequential clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lblas_sequential clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lblas_sequential clang: error: linker command failed with exit code 1 (use -v to see invocation): Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for BLAS and LAPACK in Default BLIS/AMD-AOCL ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling unchanged on BLAS/LAPACK Checking for functions [ddot] in library ['libblis.a'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lblis -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['libblis.a'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lblis -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation): Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for BLAS and LAPACK in Default BLIS/AMD-AOCL ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling unchanged on BLAS/LAPACK Checking for functions [ddot] in library ['libblis.a'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lblis -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['libblis.a'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lblis -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation): Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for BLAS and LAPACK in Default compiler locations ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling unchanged on BLAS/LAPACK Checking for functions [ddot] in library ['libblas.a'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -lblas -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Checking for functions [dgetrs] in library ['liblapack.a'] ['libblas.a'] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs(); static void _check_dgetrs() { dgetrs(); } int main() { _check_dgetrs();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Checking for functions [dgeev] in library ['liblapack.a'] ['libblas.a'] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev(); static void _check_dgeev() { dgeev(); } int main() { _check_dgeev();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Found Fortran mangling on BLAS/LAPACK which is unchanged ============================================================================================= TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:559) Check for Intel MKL library Checking for functions [mkl_set_num_threads] in library ['liblapack.a', 'libblas.a'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_mkl_set_num_threads", referenced from: __check_mkl_set_num_threads in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_mkl_set_num_threads", referenced from: __check_mkl_set_num_threads in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_mkl_set_num_threads", referenced from: __check_mkl_set_num_threads in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:603) Check for the IBM ESSL library Checking for functions [iessl] in library ['liblapack.a', 'libblas.a'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_iessl", referenced from: __check_iessl in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_iessl", referenced from: __check_iessl in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_iessl", referenced from: __check_iessl in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:623) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions [ipessl] in library ['liblapack.a', 'libblas.a'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ipessl", referenced from: __check_ipessl in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_ipessl", referenced from: __check_ipessl in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_ipessl", referenced from: __check_ipessl in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:648) Check for missing LAPACK routines Checking for functions [dgelss dgerfs dgges dhgeqz dhseqr dorgqr dormqr dstebz dstegr dstein dsteqr dsytri dtgsen dtrsen dtrtrs dgeqp3] in library ['liblapack.a'] ['libblas.a', 'liblapack.a', 'libblas.a'] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgelss(); static void _check_dgelss() { dgelss(); } char dgerfs(); static void _check_dgerfs() { dgerfs(); } char dgges(); static void _check_dgges() { dgges(); } char dhgeqz(); static void _check_dhgeqz() { dhgeqz(); } char dhseqr(); static void _check_dhseqr() { dhseqr(); } char dorgqr(); static void _check_dorgqr() { dorgqr(); } char dormqr(); static void _check_dormqr() { dormqr(); } char dstebz(); static void _check_dstebz() { dstebz(); } char dstegr(); static void _check_dstegr() { dstegr(); } char dstein(); static void _check_dstein() { dstein(); } char dsteqr(); static void _check_dsteqr() { dsteqr(); } char dsytri(); static void _check_dsytri() { dsytri(); } char dtgsen(); static void _check_dtgsen() { dtgsen(); } char dtrsen(); static void _check_dtrsen() { dtrsen(); } char dtrtrs(); static void _check_dtrtrs() { dtrtrs(); } char dgeqp3(); static void _check_dgeqp3() { dgeqp3(); } int main() { _check_dgelss(); _check_dgerfs(); _check_dgges(); _check_dhgeqz(); _check_dhseqr(); _check_dorgqr(); _check_dormqr(); _check_dstebz(); _check_dstegr(); _check_dstein(); _check_dsteqr(); _check_dsytri(); _check_dtgsen(); _check_dtrsen(); _check_dtrtrs(); _check_dgeqp3();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -llapack -lblas -llapack -lblas -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib ============================================================================================= TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:664) Do the BLAS/LAPACK libraries have a valid lsame() function with correct binding. Checking for functions [lsame] in library ['liblapack.a', 'libblas.a'] [] ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame(); static void _check_lsame() { lsame(); } int main() { _check_lsame();; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_lsame", referenced from: __check_lsame in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_lsame", referenced from: __check_lsame in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_lsame", referenced from: __check_lsame in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Defined "MISSING_LAPACK_lsame" to "1" ===== Checking compiler Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev(void); char* testroutine(void){return dgeev(); } ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev(void); char* testroutine(void){return dgeev(); } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers/conftest.o -llapack -lblas -llapack -lblas -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib ============================================================================================= TESTING: checkRuntimeIssues from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:723) Determines if BLAS/LAPACK routines use 32 or 64 bit integers ======== Checking running linked program ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { FILE *output = fopen("runtimetestoutput","w"); extern double ddot(const int*,const double*,const int *,const double*,const int*); double x1mkl[4] = {3.0,5.0,7.0,9.0}; int one1mkl = 1,nmkl = 2; double dotresultmkl = 0; dotresultmkl = ddot(&nmkl,x1mkl,&one1mkl,x1mkl,&one1mkl); fprintf(output, "-known-64-bit-blas-indices=%d",dotresultmkl != 34);; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest.o -llapack -lblas -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest Checking for 64 bit blas indices: result 0 Checking if sdot() returns a float or a double ======== Checking running linked program ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { FILE *output = fopen("runtimetestoutput","w"); extern float sdot(const int*,const float*,const int *,const float*,const int*); float x1[1] = {3.0}; int one1 = 1; long long int ione1 = 1; float sdotresult = 0; int blasint64 = 0; if (!blasint64) { sdotresult = sdot(&one1,x1,&one1,x1,&one1); } else { sdotresult = sdot((const int*)&ione1,x1,(const int*)&ione1,x1,(const int*)&ione1); } fprintf(output, "--known-sdot-returns-double=%d",sdotresult != 9); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest.o -llapack -lblas -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest Checking for sdot() return double: result 1 Defined "BLASLAPACK_SDOT_RETURNS_DOUBLE" to "1" Checking sdot(): Program did return with not 1 for output so assume returns double Checking if snrm() returns a float or a double ======== Checking running linked program ===== Checking linker Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.sharedLibraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.pthread -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { FILE *output = fopen("runtimetestoutput","w"); extern float snrm2(const int*,const float*,const int*); float x2[1] = {3.0}; int one2 = 1; long long int ione2 = 1; float normresult = 0; int blasint64 = 0; if (!blasint64) { normresult = snrm2(&one2,x2,&one2); } else { normresult = snrm2((const int*)&ione2,x2,(const int*)&ione2); } fprintf(output, "--known-snrm2-returns-double=%d",normresult != 3); ; return 0; } Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest.o -llapack -lblas -lc++ -ldl -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/config.packages.BlasLapack/conftest Checking for snrm2() return double: result 1 Checking snrm2(): Program did return with 1 for output so assume returns double Defined "BLASLAPACK_SNRM2_RETURNS_DOUBLE" to "1" ============================================================================================= TESTING: checkVersion from config.packages.BlasLapack(config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.BlasLapack(config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.BlasLapack 4.393145 ============================================================================================= TESTING: consistencyChecks from config.packages.sundials2(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sundials2(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.sundials2 0.002589 ============================================================================================= TESTING: consistencyChecks from config.packages.spai(config/BuildSystem/config/packages/spai.py:53) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.spai(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.spai 0.003055 ============================================================================================= TESTING: consistencyChecks from config.packages.raja(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.raja(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.raja 0.002178 ============================================================================================= TESTING: consistencyChecks from config.packages.pARMS(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pARMS(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.pARMS 0.001238 ============================================================================================= TESTING: consistencyChecks from config.packages.p4est(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.p4est 0.002730 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/packages/mkl_sparse_optimize.py:48) ============================================================================================= TESTING: checkVersion from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.mkl_sparse_optimize 0.004963 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_sparse(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mkl_sparse(config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.mkl_sparse(config/BuildSystem/config/packages/mkl_sparse.py:21) ============================================================================================= TESTING: checkVersion from config.packages.mkl_sparse(config/BuildSystem/config/package.py:1068) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mkl_sparse(config/BuildSystem/config/package.py:993) By default we don't care about checking if the library is shared child config.packages.mkl_sparse 0.002803 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_cpardiso(config/BuildSystem/config/packages/mkl_cpardiso.py:20) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(config/BuildSystem/config/package.py:997) Called if --with-packagename=0; does nothing by default child config.packages.mkl_cpardiso 0.003295 ============================================================================================= TESTING: consistencyChecks from config.packages.kokkos(config/BuildSystem/config/package.py:1001) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.kokkos(config/BuildSystem/config/package.py:903) ============================================================================================= TESTING: configureLibrary from config.packages.kokkos(config/BuildSystem/config/packages/kokkos.py:164) ================================================================================== Checking for a functional kokkos Looking for KOKKOS at git.kokkos, hg.kokkos or a directory starting with ['kokkos'] Could not locate an existing copy of KOKKOS: [] Downloading kokkos ============================================================================================= Trying to download git://https://github.com/kokkos/kokkos.git for KOKKOS ============================================================================================= install: Retrieving git://https://github.com/kokkos/kokkos.git as git repo Executing: git clone --recursive https://github.com/kokkos/kokkos.git /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos Looking for KOKKOS at git.kokkos, hg.kokkos or a directory starting with ['kokkos'] Found a copy of KOKKOS in git.kokkos Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', '3.5.00^{commit}'] Executing: ['git', 'rev-parse', '3.5.00'] stdout: ae5fc649ef4b62b48a01123759ed066bff227b43 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] Executing: ['git', 'checkout', '-f', 'ae5fc649ef4b62b48a01123759ed066bff227b43'] Detected Darwin/MacOSX Catalina OS Executing: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc --help | head -n 500 Detected CLANG compiler KOKKOS was just downloaded, forcing a rebuild because cannot determine if package has changed ============================================================================================= Configuring KOKKOS with cmake; this may take several minutes ============================================================================================= Executing: /usr/local/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g -DCMAKE_INSTALL_NAME_DIR:STRING="/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/lib" -DCMAKE_INSTALL_LIBDIR:STRING="lib" -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_BUILD_TYPE=Debug -DCMAKE_C_COMPILER="/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc" -DMPI_C_COMPILER="/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g -O -Wno-implicit-function-declaration" -DCMAKE_C_FLAGS_DEBUG:STRING="-fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g -O -Wno-implicit-function-declaration" -DCMAKE_C_FLAGS_RELEASE:STRING="-fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g -O -Wno-implicit-function-declaration" -DCMAKE_CXX_COMPILER="/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx" -DMPI_CXX_COMPILER="/usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx" -DCMAKE_CXX_FLAGS:STRING="-fstack-protector -fno-stack-check -g -O -fPIC" -DCMAKE_CXX_FLAGS_DEBUG:STRING="-fstack-protector -fno-stack-check -g -O -fPIC" -DCMAKE_CXX_FLAGS_RELEASE:STRING="-fstack-protector -fno-stack-check -g -O -fPIC" -DBUILD_SHARED_LIBS:BOOL=ON -DUSE_XSDK_DEFAULTS=YES -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON -DCMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=ON -DKokkos_ENABLE_MPI=ON -DKokkos_ENABLE_SERIAL=ON stdout: -- Setting default Kokkos CXX standard to 14 -- The CXX compiler identification is AppleClang 13.0.0.13000029 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Setting policy CMP0074 to use _ROOT variables -- The project name is: Kokkos -- Using -std=gnu++14 for C++14 extensions as feature -- Built-in Execution Spaces: -- Device Parallel: NoTypeDefined -- Host Parallel: NoTypeDefined -- Host Serial: SERIAL -- -- Architectures: -- Found TPLLIBDL: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/lib/libdl.tbd -- Kokkos Devices: SERIAL, Kokkos Backends: SERIAL -- Configuring done -- Generating done -- Build files have been written to: /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build ============================================================================================= Compiling and installing KOKKOS; this may take several minutes ============================================================================================= Executing: /usr/bin/make -j8 -l12.0 stdout: /usr/local/Cellar/cmake/3.22.1/bin/cmake -S/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos -B/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/Cellar/cmake/3.22.1/bin/cmake -E cmake_progress_start /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/CMakeFiles /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build//CMakeFiles/progress.marks /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/Makefile2 all /Applications/Xcode.app/Contents/Developer/usr/bin/make -f core/src/CMakeFiles/kokkoscore.dir/build.make core/src/CMakeFiles/kokkoscore.dir/depend cd /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build && /usr/local/Cellar/cmake/3.22.1/bin/cmake -E cmake_depends "Unix Makefiles" /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build 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-fstack-protector -fno-stack-check -g -O -fPIC -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk -fPIC -std=gnu++14 -MD -MT core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_NumericTraits.cpp.o -MF CMakeFiles/kokkoscore.dir/impl/Kokkos_NumericTraits.cpp.o.d -o CMakeFiles/kokkoscore.dir/impl/Kokkos_NumericTraits.cpp.o -c /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_NumericTraits.cpp Error running make on KOKKOS: Could not execute "['/usr/bin/make -j8 -l12.0 ']": /usr/local/Cellar/cmake/3.22.1/bin/cmake -S/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos -B/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/Cellar/cmake/3.22.1/bin/cmake -E cmake_progress_start 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/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src/CMakeFiles/kokkoscore.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f core/src/CMakeFiles/kokkoscore.dir/build.make core/src/CMakeFiles/kokkoscore.dir/build [ 30%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_CPUDiscovery.cpp.o [ 30%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace_deepcopy.cpp.o [ 30%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_Core.cpp.o [ 30%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_ExecPolicy.cpp.o [ 30%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_HostBarrier.cpp.o cd /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src && /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build -isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include -fstack-protector -fno-stack-check -g -O -fPIC -fstack-protector -fno-stack-check -g -O -fPIC -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk -fPIC -std=gnu++14 -MD -MT core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_ExecPolicy.cpp.o -MF CMakeFiles/kokkoscore.dir/impl/Kokkos_ExecPolicy.cpp.o.d -o CMakeFiles/kokkoscore.dir/impl/Kokkos_ExecPolicy.cpp.o -c /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_ExecPolicy.cpp [ 30%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_HostThreadTeam.cpp.o [ 30%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_Error.cpp.o cd /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src && /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build -isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include -fstack-protector -fno-stack-check -g -O -fPIC -fstack-protector -fno-stack-check -g -O -fPIC -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk -fPIC -std=gnu++14 -MD -MT core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_HostThreadTeam.cpp.o -MF CMakeFiles/kokkoscore.dir/impl/Kokkos_HostThreadTeam.cpp.o.d -o CMakeFiles/kokkoscore.dir/impl/Kokkos_HostThreadTeam.cpp.o -c /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_HostThreadTeam.cpp cd /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src && /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build -isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include -fstack-protector -fno-stack-check -g -O -fPIC -fstack-protector -fno-stack-check -g -O -fPIC -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk -fPIC -std=gnu++14 -MD -MT core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace_deepcopy.cpp.o -MF CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace_deepcopy.cpp.o.d -o CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace_deepcopy.cpp.o -c /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_HostSpace_deepcopy.cpp cd /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src && /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build -isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include -fstack-protector -fno-stack-check -g -O -fPIC -fstack-protector -fno-stack-check -g -O -fPIC -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk -fPIC -std=gnu++14 -MD -MT core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_HostBarrier.cpp.o -MF CMakeFiles/kokkoscore.dir/impl/Kokkos_HostBarrier.cpp.o.d -o CMakeFiles/kokkoscore.dir/impl/Kokkos_HostBarrier.cpp.o -c /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_HostBarrier.cpp cd /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src && /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build -isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include -fstack-protector -fno-stack-check -g -O -fPIC -fstack-protector -fno-stack-check -g -O -fPIC -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk -fPIC -std=gnu++14 -MD -MT core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_Error.cpp.o -MF CMakeFiles/kokkoscore.dir/impl/Kokkos_Error.cpp.o.d -o CMakeFiles/kokkoscore.dir/impl/Kokkos_Error.cpp.o -c /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Error.cpp cd /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src && /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build -isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include -fstack-protector -fno-stack-check -g -O -fPIC -fstack-protector -fno-stack-check -g -O -fPIC -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk -fPIC -std=gnu++14 -MD -MT core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_Core.cpp.o -MF CMakeFiles/kokkoscore.dir/impl/Kokkos_Core.cpp.o.d -o CMakeFiles/kokkoscore.dir/impl/Kokkos_Core.cpp.o -c /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Core.cpp cd /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src && /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build -isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include -fstack-protector -fno-stack-check -g -O -fPIC -fstack-protector -fno-stack-check -g -O -fPIC -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk -fPIC -std=gnu++14 -MD -MT core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_CPUDiscovery.cpp.o -MF CMakeFiles/kokkoscore.dir/impl/Kokkos_CPUDiscovery.cpp.o.d -o CMakeFiles/kokkoscore.dir/impl/Kokkos_CPUDiscovery.cpp.o -c /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_CPUDiscovery.cpp [ 34%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace.cpp.o cd /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src && /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build -isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include -fstack-protector -fno-stack-check -g -O -fPIC -fstack-protector -fno-stack-check -g -O -fPIC -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk -fPIC -std=gnu++14 -MD -MT core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace.cpp.o -MF CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace.cpp.o.d -o CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace.cpp.o -c /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_HostSpace.cpp [ 39%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_MemoryPool.cpp.o cd /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src && /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build -isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include -fstack-protector -fno-stack-check -g -O -fPIC -fstack-protector -fno-stack-check -g -O -fPIC -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk -fPIC -std=gnu++14 -MD -MT core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_MemoryPool.cpp.o -MF CMakeFiles/kokkoscore.dir/impl/Kokkos_MemoryPool.cpp.o.d -o CMakeFiles/kokkoscore.dir/impl/Kokkos_MemoryPool.cpp.o -c /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_MemoryPool.cpp [ 43%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_MemorySpace.cpp.o cd /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src && /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build -isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include -fstack-protector -fno-stack-check -g -O -fPIC -fstack-protector -fno-stack-check -g -O -fPIC -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk -fPIC -std=gnu++14 -MD -MT core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_MemorySpace.cpp.o -MF CMakeFiles/kokkoscore.dir/impl/Kokkos_MemorySpace.cpp.o.d -o CMakeFiles/kokkoscore.dir/impl/Kokkos_MemorySpace.cpp.o -c /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_MemorySpace.cpp [ 47%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_NumericTraits.cpp.o cd /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src && /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src -I/Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build -isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include -fstack-protector -fno-stack-check -g -O -fPIC -fstack-protector -fno-stack-check -g -O -fPIC -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk -fPIC -std=gnu++14 -MD -MT core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_NumericTraits.cpp.o -MF CMakeFiles/kokkoscore.dir/impl/Kokkos_NumericTraits.cpp.o.d -o CMakeFiles/kokkoscore.dir/impl/Kokkos_NumericTraits.cpp.o -c /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_NumericTraits.cppIn file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_HostSpace.cpp:49: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Tools.hpp:52: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.hpp:54: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/unordered_map:435: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/__hash_table:18: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:321:9: error: no member named 'signbit' in the global namespace using ::signbit; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:322:9: error: no member named 'fpclassify' in the global namespace using ::fpclassify; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:323:9: error: no member named 'isfinite' in the global namespace; did you mean 'finite'? using ::isfinite; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/math.h:752:12: note: 'finite' declared here extern int finite(double) ^ In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Core.cpp:45: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Core.hpp:56: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/KokkosCore_Config_DeclareBackend.hpp:47: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/decl/Kokkos_Declare_SERIAL.hpp:49: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Serial.hpp:59: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Parallel.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_View.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_HostSpace.hpp:60: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Tools.hpp:52: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.hpp:54: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/unordered_map:435: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/__hash_table:18: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:321:9: error: no member named 'signbit' in the global namespace using ::signbit; ~~^ In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_HostSpace.cpp:49: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Tools.hpp:52: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.hpp:54: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/unordered_map:435: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/__hash_table:18: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:324:9: error: no member named 'isinf' in the global namespace using ::isinf; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:325:9: error: no member named 'isnan' in the global namespace using ::isnan; ~~^ In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_HostSpace_deepcopy.cpp:45: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Core.hpp:56: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/KokkosCore_Config_DeclareBackend.hpp:47: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/decl/Kokkos_Declare_SERIAL.hpp:49: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Serial.hpp:59: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Parallel.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_View.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_HostSpace.hpp:60: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Tools.hpp:52: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.hpp:54: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/unordered_map:435: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/__hash_table:18: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:321:9: error: no member named 'signbit' in the global namespace using ::signbit; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:326:9: error: no member named 'isnormal' in the global namespace using ::isnormal; ~~^ In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_ExecPolicy.cpp:45: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Core.hpp:56: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/KokkosCore_Config_DeclareBackend.hpp:47: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/decl/Kokkos_Declare_SERIAL.hpp:49: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Serial.hpp:59: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Parallel.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_View.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_HostSpace.hpp:60: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Tools.hpp:52: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.hpp:54: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/unordered_map:435: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/__hash_table:18: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:321:9: error: no member named 'signbit' in the global namespace using ::signbit; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:327:7: error: no member named 'isgreater' in the global namespace; did you mean '::std::greater'? using ::isgreater; ^~ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/functional:742:29: note: '::std::greater' declared here struct _LIBCPP_TEMPLATE_VIS greater : binary_function<_Tp, _Tp, bool> ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:322:9: error: no member named 'fpclassify' in the global namespace using ::fpclassify; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:322:9: error: no member named 'fpclassify' in the global namespace using ::fpclassify; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:322:9: error: no member named 'fpclassify' in the global namespace using ::fpclassify; ~~^ In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_HostSpace.cpp:49: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Tools.hpp:52: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.hpp:54: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/unordered_map:435: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/__hash_table:18: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:328:7: error: no member named 'isgreaterequal' in the global namespace; did you mean '::std::greater_equal'? using ::isgreaterequal; ^~ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/functional:771:29: note: '::std::greater_equal' declared here struct _LIBCPP_TEMPLATE_VIS greater_equal : binary_function<_Tp, _Tp, bool> ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:323:9: error: no member named 'isfinite' in the global namespace; did you mean 'finite'? using ::isfinite; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/math.h:752:12: note: 'finite' declared here extern int finite(double) ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:323:9: error: no member named 'isfinite' in the global namespace; did you mean 'finite'? using ::isfinite; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/math.h:752:12: note: 'finite' declared here extern int finite(double) ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:323:9: error: no member named 'isfinite' in the global namespace; did you mean 'finite'? using ::isfinite; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/math.h:752:12: note: 'finite' declared here extern int finite(double) ^ In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Core.cpp:45: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Core.hpp:56: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/KokkosCore_Config_DeclareBackend.hpp:47: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/decl/Kokkos_Declare_SERIAL.hpp:49: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Serial.hpp:59: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Parallel.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_View.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_HostSpace.hpp:60: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Tools.hpp:52: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.hpp:54: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/unordered_map:435: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/__hash_table:18: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:324:9: error: no member named 'isinf' in the global namespace using ::isinf; ~~^ In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_HostSpace.cpp:49: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Tools.hpp:52: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.hpp:54: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/unordered_map:435: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/__hash_table:18: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:329:9: error: no member named 'isless' in the global namespace using ::isless; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:325:9: error: no member named 'isnan' in the global namespace using ::isnan; ~~^ In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_ExecPolicy.cpp:45: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Core.hpp:56: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/KokkosCore_Config_DeclareBackend.hpp:47: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/decl/Kokkos_Declare_SERIAL.hpp:49: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Serial.hpp:59: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Parallel.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_View.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_HostSpace.hpp:60: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Tools.hpp:52: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.hpp:54: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/unordered_map:435: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/__hash_table:18: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:324:9: error: no member named 'isinf' in the global namespace using ::isinf; ~~^ In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_HostSpace_deepcopy.cpp:45: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Core.hpp:56: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/KokkosCore_Config_DeclareBackend.hpp:47: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/decl/Kokkos_Declare_SERIAL.hpp:49: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Serial.hpp:59: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Parallel.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_View.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_HostSpace.hpp:60: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Tools.hpp:52: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.hpp:54: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/unordered_map:435: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/__hash_table:18: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:324:9: error: no member named 'isinf' in the global namespace using ::isinf; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:330:9: error: no member named 'islessequal' in the global namespace using ::islessequal; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:325:9: error: no member named 'isnan' in the global namespace using ::isnan; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:326:9: error: no member named 'isnormal' in the global namespace using ::isnormal; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:325:9: error: no member named 'isnan' in the global namespace using ::isnan; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:326:9: error: no member named 'isnormal' in the global namespace using ::isnormal; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:326:9: error: no member named 'isnormal' in the global namespace using ::isnormal; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:331:9: error: no member named 'islessgreater' in the global namespace using ::islessgreater; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:327:7: error: no member named 'isgreater' in the global namespace; did you mean '::std::greater'? using ::isgreater; ^~ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/functional:742:29: note: '::std::greater' declared here struct _LIBCPP_TEMPLATE_VIS greater : binary_function<_Tp, _Tp, bool> ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:327:7: error: no member named 'isgreater' in the global namespace; did you mean '::std::greater'? using ::isgreater; ^~ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/functional:742:29: note: '::std::greater' declared here struct _LIBCPP_TEMPLATE_VIS greater : binary_function<_Tp, _Tp, bool> ^ In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Core.cpp:45: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Core.hpp:56: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/KokkosCore_Config_DeclareBackend.hpp:47: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/decl/Kokkos_Declare_SERIAL.hpp:49: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Serial.hpp:59: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Parallel.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_View.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_HostSpace.hpp:60: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Tools.hpp:52: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.hpp:54: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/unordered_map:435: In file included from In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_ExecPolicy.cpp:45: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Core.hpp:56: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/KokkosCore_Config_DeclareBackend.hpp:47: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/decl/Kokkos_Declare_SERIAL.hpp:49: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Serial.hpp:59: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Parallel.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_View.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_HostSpace.hpp:60: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Tools.hpp:/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:327:7: error: no member named 'isgreater' in the global namespace; did you mean '::std::greater'? using ::isgreater; ^~ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/functional:/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/__hash_table:18: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:328:7: error: 52: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.hpp:54: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/unordered_map:435: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/__hash_table:18742:29: note: '::std::greater' declared here struct _LIBCPP_TEMPLATE_VIS greater : binary_function<_Tp, _Tp, bool> ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:332:9: error: no member named 'isunordered' in the global namespace using ::isunordered; ~~^ no member named 'isgreaterequal' in the global namespace; did you mean '::std::greater_equal'? using ::isgreaterequal; ^~ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/functional:771:29: note: '::std::greater_equal' declared here struct _LIBCPP_TEMPLATE_VIS greater_equal : binary_function<_Tp, _Tp, bool> ^ : /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:328:7: error: no member named 'isgreaterequal' in the global namespace; did you mean '::std::greater_equal'? using ::isgreaterequal; ^~ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/functional:771:29: note: '::std::greater_equal' declared here struct _LIBCPP_TEMPLATE_VIS greater_equal : binary_function<_Tp, _Tp, bool> ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:333:9: error: no member named 'isunordered' in the global namespace using ::isunordered; ~~^ In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Core.cpp:45: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Core.hpp:56: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/KokkosCore_Config_DeclareBackend.hpp:47: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/decl/Kokkos_Declare_SERIAL.hpp:49: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Serial.hpp:59: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Parallel.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_View.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_HostSpace.hpp:60: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Tools.hpp:52: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.hpp:54: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/unordered_map:435: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/__hash_table:18: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:329:9: error: no member named 'isless' in the global namespace using ::isless; ~~^ In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_HostSpace_deepcopy.cpp:45: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Core.hpp:56: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/KokkosCore_Config_DeclareBackend.hpp:47: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/decl/Kokkos_Declare_SERIAL.hpp:49: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Serial.hpp:59: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Parallel.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_View.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_HostSpace.hpp:60: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Tools.hpp:52: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.hpp:54: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/unordered_map:435: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/__hash_table:18: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:328:7: error: no member named 'isgreaterequal' in the global namespace; did you mean '::std::greater_equal'? using ::isgreaterequal; ^~ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/functional:771:29: note: '::std::greater_equal' declared here struct _LIBCPP_TEMPLATE_VIS greater_equal : binary_function<_Tp, _Tp, bool> ^ In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_ExecPolicy.cpp:45: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Core.hpp:56: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/KokkosCore_Config_DeclareBackend.hpp:47: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/decl/Kokkos_Declare_SERIAL.hpp:49: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Serial.hpp:59: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Parallel.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_View.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_HostSpace.hpp:60: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Tools.hpp:52: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.hpp:54: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/unordered_map:435: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/__hash_table:18: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:329:9: error: no member named 'isless' in the global namespace using ::isless; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:330:9: error: no member named 'islessequal' in the global namespace using ::islessequal; ~~^ In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_HostSpace_deepcopy.cpp:45: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Core.hpp:56: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/petsc-build/KokkosCore_Config_DeclareBackend.hpp:47: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/decl/Kokkos_Declare_SERIAL.hpp:49: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Serial.hpp:59: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Parallel.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_View.hpp:54: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_HostSpace.hpp:60: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Tools.hpp:52: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.hpp:54: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/unordered_map:435: In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/__hash_table:18: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:329:9: error: no member named 'isless' in the global namespace using ::isless; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:330:9: error: no member named 'islessequal' in the global namespace using ::islessequal; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:331:9: error: no member named 'islessgreater' in the global namespace using ::islessgreater; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:330:9: error: no member named 'islessequal' in the global namespace using ::islessequal; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:331:9: error: no member named 'islessgreater' in the global namespace using ::islessgreater; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:331:9: error: no member named 'islessgreater' in the global namespace using ::islessgreater; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:332:9: error: no member named 'isunordered' in the global namespace using ::isunordered; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:332:9: error: no member named 'isunordered' in the global namespace using ::isunordered; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:333:9: error: no member named 'isunordered' in the global namespace using ::isunordered; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:333:9: error: no member named 'isunordered' in the global namespace using ::isunordered; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:332:9: error: no member named 'isunordered' in the global namespace using ::isunordered; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:333:9: error: no member named 'isunordered' in the global namespace using ::isunordered; ~~^ In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_NumericTraits.cpp:1: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_NumericTraits.hpp:51: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:321:9: error: no member named 'signbit' in the global namespace using ::signbit; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:322:9: error: no member named 'fpclassify' in the global namespace using ::fpclassify; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:323:9: error: no member named 'isfinite' in the global namespace; did you mean 'finite'? using ::isfinite; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/math.h:752:12: note: 'finite' declared here extern int finite(double) ^ In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_NumericTraits.cpp:1: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_NumericTraits.hpp:51: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:324:9: error: no member named 'isinf' in the global namespace using ::isinf; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:325:9: error: no member named 'isnan' in the global namespace using ::isnan; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:326:9: error: no member named 'isnormal' in the global namespace using ::isnormal; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:327:9: error: no member named 'isgreater' in the global namespace using ::isgreater; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:328:9: error: no member named 'isgreaterequal' in the global namespace using ::isgreaterequal; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:329:9: error: no member named 'isless' in the global namespace using ::isless; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:330:9: error: no member named 'islessequal' in the global namespace using ::islessequal; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:331:9: error: no member named 'islessgreater' in the global namespace using ::islessgreater; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:332:9: error: no member named 'isunordered' in the global namespace using ::isunordered; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:333:9: error: no member named 'isunordered' in the global namespace using ::isunordered; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:339:9: error: no member named 'abs' in the global namespace; did you mean 'fabs'? using ::abs; ~~^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/math.h:417:15: note: 'fabs' declared here extern double fabs(double); ^ In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_NumericTraits.cpp:1: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_NumericTraits.hpp:51: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:644:26: error: no template named 'numeric_limits' bool _FloatBigger = (numeric_limits<_FloatT>::digits > numeric_limits<_IntT>::digits), ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:644:60: error: no template named 'numeric_limits' bool _FloatBigger = (numeric_limits<_FloatT>::digits > numeric_limits<_IntT>::digits), ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:645:18: error: no template named 'numeric_limits' int _Bits = (numeric_limits<_IntT>::digits - numeric_limits<_FloatT>::digits)> ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:645:50: error: no template named 'numeric_limits' int _Bits = (numeric_limits<_IntT>::digits - numeric_limits<_FloatT>::digits)> ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.0.sdk/usr/include/c++/v1/cmath:650:17: error: no template named 'numeric_limits' static_assert(numeric_limits<_FloatT>::radix == 2, "FloatT has incorrect radix"); ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. make[2]: *** [core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_NumericTraits.cpp.o] Error 1 make[2]: *** Waiting for unfinished jobs.... 13 errors generated. In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_Core.cpp:45: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Core.hpp:61: /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:256:10: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value] return abs(n); ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:256:10: note: use function 'std::abs' instead return abs(n); ^~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:256:10: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:260:10: warning: absolute value function 'abs' given an argument of type 'long long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value] return abs(n); ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:260:10: note: use function 'std::abs' instead return abs(n); ^~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:260:10: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:264:10: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] return abs(x); ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:264:10: note: use function 'std::abs' instead return abs(x); ^~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:264:10: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:268:10: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] return abs(x); ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:268:10: note: use function 'std::abs' instead return abs(x); ^~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:268:10: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:273:10: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] return abs(x); ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:273:10: note: use function 'std::abs' instead return abs(x); ^~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:273:10: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: warning: absolute value function 'fabs' given an argument of type 'long double' but has parameter of type 'double' which may cause truncation of value [-Wabsolute-value] KOKKOS_IMPL_MATH_UNARY_FUNCTION(fabs) ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: note: use function 'std::abs' instead KOKKOS_IMPL_MATH_UNARY_FUNCTION(fabs) ^~~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:116:12: note: expanded from macro 'KOKKOS_IMPL_MATH_UNARY_FUNCTION' return FUNC(x); \ ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: warning: absolute value function 'fabs' given an argument of type 'long double' but has parameter of type 'double' which may cause truncation of value [-Wabsolute-value] KOKKOS_IMPL_MATH_UNARY_FUNCTION(fabs) ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: note: use function 'std::abs' instead KOKKOS_IMPL_MATH_UNARY_FUNCTION(fabs) ^~~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:124:12: note: expanded from macro 'KOKKOS_IMPL_MATH_UNARY_FUNCTION' return FUNC(x); \ ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: note: include the header or explicitly provide a declaration for 'std::abs' make[2]: *** [core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace.cpp.o] Error 1 /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected unqualified-id KOKKOS_IMPL_MATH_UNARY_PREDICATE(isfinite) ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected ')' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: note: to match this '(' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected unqualified-id KOKKOS_IMPL_MATH_UNARY_PREDICATE(isfinite) ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected ')' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: note: to match this '(' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected unqualified-id KOKKOS_IMPL_MATH_UNARY_PREDICATE(isfinite) ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected ')' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: note: to match this '(' fatal error: too many errors emitted, stopping now [-ferror-limit=] In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_HostSpace_deepcopy.cpp:45: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Core.hpp:61: /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:256:10: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value] return abs(n); ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:256:10: note: use function 'std::abs' instead return abs(n); ^~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:256:10: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:260:10: warning: absolute value function 'abs' given an argument of type 'long long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value] return abs(n); ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:260:10: note: use function 'std::abs' instead return abs(n); ^~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:260:10: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:264:10: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] return abs(x); ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:264:10: note: use function 'std::abs' instead return abs(x); ^~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:264:10: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:268:10: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] return abs(x); ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:268:10: note: use function 'std::abs' instead return abs(x); ^~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:268:10: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:273:10: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] return abs(x); ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:273:10: note: use function 'std::abs' instead return abs(x); ^~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:273:10: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: warning: absolute value function 'fabs' given an argument of type 'long double' but has parameter of type 'double' which may cause truncation of value [-Wabsolute-value] KOKKOS_IMPL_MATH_UNARY_FUNCTION(fabs) ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: note: use function 'std::abs' instead KOKKOS_IMPL_MATH_UNARY_FUNCTION(fabs) ^~~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:116:12: note: expanded from macro 'KOKKOS_IMPL_MATH_UNARY_FUNCTION' return FUNC(x); \ ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: warning: absolute value function 'fabs' given an argument of type 'long double' but has parameter of type 'double' which may cause truncation of value [-Wabsolute-value] KOKKOS_IMPL_MATH_UNARY_FUNCTION(fabs) ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: note: use function 'std::abs' instead KOKKOS_IMPL_MATH_UNARY_FUNCTION(fabs) ^~~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:124:12: note: expanded from macro 'KOKKOS_IMPL_MATH_UNARY_FUNCTION' return FUNC(x); \ ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: note: include the header or explicitly provide a declaration for 'std::abs' In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/impl/Kokkos_ExecPolicy.cpp:45: In file included from /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_Core.hpp:61: /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:256:10: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value] return abs(n); ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:256:10: note: use function 'std::abs' instead return abs(n); ^~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:256:10: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:260:10: warning: absolute value function 'abs' given an argument of type 'long long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value] return abs(n); ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:260:10: note: use function 'std::abs' instead return abs(n); ^~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:260:10: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:264:10: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] return abs(x); ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:264:10: note: use function 'std::abs' instead return abs(x); ^~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:264:10: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:268:10: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] return abs(x); ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:268:10: note: use function 'std::abs' instead return abs(x); ^~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:268:10: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:273:10: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] return abs(x); ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:273:10: note: use function 'std::abs' instead return abs(x); ^~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:273:10: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: warning: absolute value function 'fabs' given an argument of type 'long double' but has parameter of type 'double' which may cause truncation of value [-Wabsolute-value] KOKKOS_IMPL_MATH_UNARY_FUNCTION(fabs) ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: note: use function 'std::abs' instead KOKKOS_IMPL_MATH_UNARY_FUNCTION(fabs) ^~~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:116:12: note: expanded from macro 'KOKKOS_IMPL_MATH_UNARY_FUNCTION' return FUNC(x); \ ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: warning: absolute value function 'fabs' given an argument of type 'long double' but has parameter of type 'double' which may cause truncation of value [-Wabsolute-value] KOKKOS_IMPL_MATH_UNARY_FUNCTION(fabs) ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: note: use function 'std::abs' instead KOKKOS_IMPL_MATH_UNARY_FUNCTION(fabs) ^~~~ std::abs /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:124:12: note: expanded from macro 'KOKKOS_IMPL_MATH_UNARY_FUNCTION' return FUNC(x); \ ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:276:33: note: include the header or explicitly provide a declaration for 'std::abs' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected unqualified-id KOKKOS_IMPL_MATH_UNARY_PREDICATE(isfinite) ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected ')' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: note: to match this '(' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected unqualified-id KOKKOS_IMPL_MATH_UNARY_PREDICATE(isfinite) ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected ')' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: note: to match this '(' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected unqualified-id KOKKOS_IMPL_MATH_UNARY_PREDICATE(isfinite) ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected ')' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: note: to match this '(' fatal error: too many errors emitted, stopping now [-ferror-limit=] /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected unqualified-id KOKKOS_IMPL_MATH_UNARY_PREDICATE(isfinite) ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected ')' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: note: to match this '(' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected unqualified-id KOKKOS_IMPL_MATH_UNARY_PREDICATE(isfinite) ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected ')' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: note: to match this '(' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected unqualified-id KOKKOS_IMPL_MATH_UNARY_PREDICATE(isfinite) ^ /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: error: expected ')' /Users/markadams/Codes/petsc2/arch-macosx-gnu-kokkos-g/externalpackages/git.kokkos/core/src/Kokkos_MathematicalFunctions.hpp:338:34: note: to match this '(' fatal error: too many errors emitted, stopping now [-ferror-limit=] 7 warnings and 20 errors generated. 7 warnings and 20 errors generated. make[2]: *** [core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace_deepcopy.cpp.o] Error 1 make[2]: *** [core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_ExecPolicy.cpp.o] Error 1 7 warnings and 20 errors generated. make[2]: *** [core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_Core.cpp.o] Error 1 make[1]: *** [core/src/CMakeFiles/kokkoscore.dir/all] Error 2 make: *** [all] Error 2 **** Configure header /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_Alignx(a,b) #define PETSC_BLASLAPACK_SDOT_RETURNS_DOUBLE 1 #define PETSC_BLASLAPACK_SNRM2_RETURNS_DOUBLE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_DO_NOT_SWAP_CHILD_FOR_DEBUGGER 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CLOSURE 1 #define PETSC_HAVE_CXXABI_H 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX_FIX 1 #define PETSC_HAVE_CXX_DIALECT_CXX03 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_CXX_DIALECT_CXX17 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE OMP #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_OMPI_MAJOR_VERSION 4 #define PETSC_HAVE_OMPI_MINOR_VERSION 1 #define PETSC_HAVE_OMPI_RELEASE_VERSION 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_MAX_PATH_LEN 1024 #define PETSC_MEMALIGN 16 #define PETSC_MISSING_LAPACK_lsame 1 #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_PYTHON_EXE "/Users/markadams/opt/miniconda2/envs/conda_env/bin/python" #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_DEBUGGER "lldb" #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_USING_DARWIN 1 #define PETSC_VERSION_BRANCH_GIT "adams/fix_mat_ex5k" #define PETSC_VERSION_DATE_GIT "2021-12-07 20:18:18 -0600" #define PETSC_VERSION_GIT "v3.16.1-440-gf6c5847ddc" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #endif **** C specific Configure header /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-unpqfbpp/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Error running make on KOKKOS ******************************************************************************* File "/Users/markadams/Codes/petsc2/config/configure.py", line 472, in petsc_configure framework.configure(out = sys.stdout) File "/Users/markadams/Codes/petsc2/config/BuildSystem/config/framework.py", line 1393, in configure self.processChildren() File "/Users/markadams/Codes/petsc2/config/BuildSystem/config/framework.py", line 1381, in processChildren self.serialEvaluation(self.childGraph) File "/Users/markadams/Codes/petsc2/config/BuildSystem/config/framework.py", line 1356, in serialEvaluation child.configure() File "/Users/markadams/Codes/petsc2/config/BuildSystem/config/package.py", line 1185, in configure self.executeTest(self.configureLibrary) File "/Users/markadams/Codes/petsc2/config/BuildSystem/config/base.py", line 138, in executeTest ret = test(*args,**kargs) File "/Users/markadams/Codes/petsc2/config/BuildSystem/config/packages/kokkos.py", line 173, in configureLibrary config.package.CMakePackage.configureLibrary(self) File "/Users/markadams/Codes/petsc2/config/BuildSystem/config/package.py", line 935, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/Users/markadams/Codes/petsc2/config/BuildSystem/config/package.py", line 512, in generateGuesses d = self.checkDownload() File "/Users/markadams/Codes/petsc2/config/BuildSystem/config/package.py", line 646, in checkDownload return self.getInstallDir() File "/Users/markadams/Codes/petsc2/config/BuildSystem/config/package.py", line 408, in getInstallDir installDir = self.Install() File "/Users/markadams/Codes/petsc2/config/BuildSystem/config/package.py", line 1872, in Install raise RuntimeError('Error running make on '+self.PACKAGE) ================================================================================ Finishing configure run at Wed, 08 Dec 2021 08:27:45 -0500 ================================================================================