Executing: uname -s stdout: Darwin ================================================================================ ================================================================================ Starting configure run at Tue, 23 Nov 2021 11:52:41 -0500 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --PETSC_ARCH=arch-master-debug --download-chaco --download-ctetgen --download-egads --download-exodusii --download-metis --download-netcdf --download-opencascade --download-p4est --download-parmetis --download-pnetcdf --download-tetgen --download-triangle --with-cmake-exec=/PETSc3/petsc/apple/bin/cmake --with-ctest-exec=/PETSc3/petsc/apple/bin/ctest --with-fc=0 --with-hdf5-dir=/PETSc3/petsc/apple --with-mpi-dir=/PETSc3/petsc/apple --with-shared-libraries --with-zlib --download-ptscotch Working directory: /PETSc3/petsc/petsc-pylith Machine platform: ('Darwin', 'MacBook-Pro.fios-router.home', '19.6.0', 'Darwin Kernel Version 19.6.0: Thu Jun 18 20:49:00 PDT 2020; root:xnu-6153.141.1~1/RELEASE_X86_64', 'x86_64', 'i386') Python version: 2.7.16 (default, Jun 5 2020, 22:59:21) [GCC 4.2.1 Compatible Apple LLVM 11.0.3 (clang-1103.0.29.20) (-macos10.15-objc- ================================================================================ Environmental variables TAO_DIR=/PETSc3/fem/tao-lite HDF5_DIR=/usr/local/hdf5 LOGNAME=knepley USER=knepley PATH=/PETSc3/cig/bin:/PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin:/PETSc3/petsc/apple/bin:/Library/Frameworks/Python.framework/Versions/3.8/bin:/opt/local/bin:/opt/local/sbin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/texbin:/opt/X11/bin:/usr/local/git/bin:/Library/Frameworks/Python.framework/Versions/3.8/bin:/opt/local/bin:/opt/local/sbin:/usr/X11/bin:/usr/local/texlive/2019/bin/x86_64-darwin:/usr/local/cuda/bin:/usr/local/gmt/bin:/usr/local/bin:/usr/X11/bin:/usr/local/texlive/2019/bin/x86_64-darwin:/usr/local/cuda/bin:/usr/local/gmt/bin HOME=/Users/knepley DISPLAY=/private/tmp/com.apple.launchd.SJt6rFWL2G/org.xquartz:0 TERM_PROGRAM=atom-ide-terminal LANG=en_US.UTF-8 __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0 TERM=xterm-256color SHELL=/bin/bash VERSIONER_PYTHON_VERSION=2.7 SHLVL=2 MACOSX_DEPLOYMENT_TARGET=10.15 PETSC_ARCH=arch-pylith-debug XPC_FLAGS=0x0 PETSC_DIR=/PETSc3/petsc/petsc-pylith _=./arch-master-debug/lib/petsc/conf/reconfigure-arch-master-debug.py PETSC_OPTIONS=-malloc_debug MPIEXEC=/PETSc3/petsc/apple/bin/mpiexec CIG_DIR=/PETSc3/cig XPC_SERVICE_NAME=0 PYTHONPATH=/PETSc3/cig/lib/python3.8/site-packages::/usr/local/lib/python2.6/site-packages:/PETSc3/petsc/petsc-dev/arch-master-debug/lib:/PETSc3/petsc/petsc-dev/arch-master-debug/lib/python2.6/site-packages:/usr/local/lib/python2.6/site-packages:/PETSc3/petsc/petsc-dev/arch-master-debug/lib:/PETSc3/petsc/petsc-dev/arch-master-debug/lib/python2.6/site-packages SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.MUczxjE7PL/Listeners DYLD_LIBRARY_PATH=:/usr/local/boost/lib:/usr/local/cuda/lib:/usr/local/boost/lib:/usr/local/cuda/lib TMPDIR=/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/ CUDA_SDK_DIR=/PETSc3/multicore/NVIDIA_CUDA_SDK BIBINPUTS=.:/PETSc3/papers/BarbaGroup/bibTex OLDPWD=/PETSc3/petsc/petsc-pylith/src/snes/tutorials HISTCONTROL=ignoreboth PWD=/PETSc3/petsc/petsc-pylith SLEPC_DIR=/PETSc3/petsc/slepc-dev Files in path provided by default path /PETSc3/cig/bin: automake-1.12 pyre_doc.py proj unit2 libtool aclocal idle pip3.8 automake-1.13 c_rehash mpinemesis swig autoscan 2to3 powerlaw_gendb.py python3 aclocal-1.12 pylith_cfgsearch easy_install pydoc aclocal-1.13 pip3 nad2bin autom4te easy_install-3.8 nccopy ccache-swig pylithinfo cython autoupdate python3.8 nemesis pylith_genxdmf powerlaw_gendb libtoolize invgeod gie idle3 easy_install-2.6 python-config python3-config f2py f2py3.8 pyconvert.py pylith_eqinfo pylith_runner pylith_info easy_install-2.7 geod idd.py cygdb cppunit-config autoreconf ncdump autoconf journald.py autoheader projinfo nad2nad pydoc3.8 pylith gensimpledb.py ifnames idle3.8 cythonize f2py3 openssl cct cs2cs python3.8-config nc-config pydoc3 invproj ncgen3 ncgen smtpd.py DllPlugInTester 2to3-3.8 automake ipad.py pylith_dumpparameters /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin: ccmake h5perf hwloc-compress-dir hwloc-bind hydra_pmi_proxy h5copy h52gif h5pcc h5perf_serial pnetcdf-config usescases cmake cdfdiff h5unjam hwloc-distrib mdump2 ncmpigen h5stat h5ls lstopo nccopy hwloc-assembler-remote hwloc-distances cmakexbuild hwloc-calc gif2h5 mdump3 hwloc-info h5jam mdump pnetcdf_version unittests ncoffsets exodiff ncvalidator h5mkgrp h5repack hwloc-ls hwloc-patch h5pfc hwloc-assembler ncmpidiff medimport ctest parkill ncdump h5diff hwloc-diff xmdump lstopo-no-graphics hwloc-ps h5redeploy h5debug testc ph5diff h5repart h5import hydra_persist xmdump2 nc-config ncgen3 hydra_nameserver ncmpidump ncgen cpack xmdump3 hwloc-annotate h5dump medconforme /PETSc3/petsc/apple/bin: mpiexec.dSYM ccmake h5perf mpif90 hydra_pmi_proxy.dSYM hydra_pmi_proxy h5copy h52gif h5pcc h5perf_serial mpirun cmake h5unjam mpiexec.hydra h5stat h5ls gif2h5 h5jam mpivars h5mkgrp mpif77 h5format_convert h5repack mpichversion mpicc h5watch h5pfc ctest parkill mpicxx h5diff h5clear h5redeploy h5debug ph5diff h5repart h5import hydra_persist mpiexec mpic++ mpifort hydra_nameserver cpack h5dump /Library/Frameworks/Python.framework/Versions/3.8/bin: pip3.8 2to3 python3 pip3 easy_install-3.8 python3.8 idle3 python3-config pydoc3.8 idle3.8 python3.8-config pydoc3 2to3-3.8 /opt/local/bin: cpan pod2usage-5.12 tabs msgconv dprofpp perl5.8 enc2xs-5.8 cpanp-run-perl perl5.12.3 runhaskell shasum-5.12 perlcc-5.8 msggrep toe autopoint wget piconv-5.12 s2p-5.8 hp2ps perlivp c_rehash pod2usage cpan2dist-5.12 perlivp-5.8 prove-5.8 gm4 perl5 msgcomm psed-5.8 infotocap libnetcfg ncursesw5-config corelist-5.8 c2ph perl5.12 iconv captoinfo perlivp-5.12 dprofpp-5.8 daemondo cpan-5.12 pstruct-5.8 pod2latex autoupdate263 pod2text autoscan263 psed-5.12 tset ptar-5.12 perl reset perlbug piconv h2ph xmlwf podselect-5.8 autom4te263 splain-5.12 prove podchecker perlbug-5.8 find2perl piconv-5.8 msgen ifnames263 podchecker-5.12 autoheader263 msgmerge gperf perlbug-5.12 hpc envsubst podchecker-5.8 pod2man-5.8 perlthanks-5.8 ncurses5-config ghc-pkg msginit pl2pm c2ph-5.8 dprofpp-5.12 a2p-5.8 clear pod2latex-5.8 libnetcfg-5.12 tic podselect-5.12 perlthanks cpanp s2p-5.12 ghc perldoc-5.8 cpan2dist ghci-6.10.4 xsubpp perldoc idn cpanp-5.12 haddock autoconf263 gettext infocmp gettext.sh h2xs-5.12 msgcmp ghc-6.10.4 pl2pm-5.12 pod2man-5.12 ghc-pkg-6.10.4 h2ph-5.12 msgcat pod2text-5.8 instmodsh-5.12 recode-sr-latin h2ph-5.8 portmirror h2xs xsubpp-5.8 enc2xs-5.12 a2p-5.12 pod2man c2ph-5.12 enc2xs prove-5.12 hasktags msgexec h2xs-5.8 ngettext podselect psed a2p pod2usage-5.8 pod2latex-5.12 pl2pm-5.8 perlthanks-5.12 port msgunfmt pod2html-5.12 tput openssl find2perl-5.12 splain ghci msgfilter pod2html-5.8 config_data-5.12 pstruct pod2html s2p hsc2hs libnetcfg-5.8 portindex perldoc-5.12 runghc portf cpan-5.8 cpanp-run-perl-5.12 pod2text-5.12 msgfmt perl5.8.9 instmodsh-5.8 corelist-5.12 msgattrib autoreconf263 xgettext pstruct-5.12 ptardiff-5.12 xsubpp-5.12 find2perl-5.8 gettextize msguniq help2man splain-5.8 /opt/local/sbin: .turd_MacPorts /usr/local/bin: pip3.7 lzmainfo dvipdf pip-2.6 tryaffix pyrsa-sign pip3.8 cluster pildriver.py munchlist ps2ps nctoh5 gv2gml xzdec font2c tred ptrepack pv.sh gdb docker unflatten gs-noX11 callgrind_control notary pip2 gfortran mm2gv 2to3 bdftops hyperkit python3 gs dot apm pyrsa-priv2pub easy_install ispell cg_merge dul-daemon atom pip3 docker-compose-v1 easy_install-3.8 gvpack pyrsa-encrypt-bigfile ps2pdfwr ps2pdf12 defmt-c lefty lneato gsdj vgdb pdf2dsc docker-credential-ecr-login graphml2gv pilconvert.py kubectl.docker ps2pdf14 buildhash brew gsnd ps2pdf13 fab mako-render cython texdist logtool gs-X11 python3.8 sccmap gvmap docker-credential-osxkeychain idle3 ijoin cg_diff pilfile.py xz pphs gsdj500 defmt-sh dumphint chardetect ps2ascii findaffix runalyzer-gather gv-fc-cache easy_install-2.6 fixmswrd.pl cg_annotate pyrsa-keygen python3-config f2py ps2pdf pip pf2afm pilfont.py pfbtopfa icombine valgrind-listener gvgen docker-credential-desktop pyrsa-decrypt com.docker.cli pipdate3 gvpr nop xzless cygdb gslp pygmentize gxl2gv runalyzer printafm vpnkit acyclic gml2gv ps2ps2 pyrsa-encrypt pcretest pdfopt gslj ps2epsi hub-tool hg gc pydoc3.8 gsbj unix-lpr.sh meshio-convert callgrind_annotate dijkstra pip2.7 valgrind-di-server gvmap.sh pcre-config dot_builtins prune pdf2ps lzmadec node eps2eps idle3.8 docker-compose lprsetup.sh cythonize virtualenv bcomps ptdump kubectl wftopfa python3.8-config ccomps xzmore pilprint.py dul-web xzgrep pydoc3 pipdate valgrind pyrsa-verify dotty npm vimdot 2to3-3.8 bzr xzdiff gvcolor pcregrep convert pyrsa-decrypt-bigfile ms_print dulwich /usr/bin: uux cpan BuildStrings loads.d write indent bzip2recover hdiutil top javah pstruct5.18 tee binhex5.18.pl xip wsimport bzfgrep qlmanage snmptranslate split chsh stty.pl xml2man iprofiler man lpoptions tabs smtpd2.7.py rview lsvfs zgrep dbiprof zmore corelist5.28 cpanp-run-perl gcov iptab5.28 svn vim idle2.7 macerror5.18 xjc lwp-request5.18 bzmore package-stash-conflicts cancel apply bzgrep umask g++ libtool pre-grohtml colcrt phpize unalias mp2bug groff mkfifo toe hexdump spfd5.18 idle crc325.18 Rez cap_mkdb ictool cmp syscallbypid.d snmpset locate binhex5.28.pl afconvert afclip bzegrep neqn instmodsh extcheck javapackager pl compress corelist5.18 fddist db_upgrade diagnose-fu ctags iptab5.18 zdiff macerror5.28 pathchk mesg setregion perlivp c++ pod2readme vi iofileb.d errinfo zipgrep pod2usage alias wait psed5.18 safaridriver bzdiff lwp-request5.28 unpack200 corelist expand strings appletviewer idlj wall spfd5.28 brctl crc325.28 gm4 db_hotbackup auvaltool applesingle clang ibtool tty git-receive-pack infotocap pkill pwhich5.18 cups-config basename nclist objdump install native2ascii c99 desdp binhex lsmp xmllint texi2pdf last vm_stat syslog spfquery5.18 net-snmp-cert nslookup prove5.18 vimdiff topsyscall cpan2dist5.18 2to3-2.7 libnetcfg c++filt avbdiagnose nice perlivp5.18 xcscontrol calendar locale strip symbolscache tfmtodit trace tops lprm tiffutil du diff3 cupstestppd sw_vers fs_usage host s2p5.18 jarsigner app-sso grolbp nscurl logger caffeinate say net-snmp-create-v3-user lwp-download5.18 plutil python3 avbutil enc2xs5.28 xcode-select powermetrics moose-outdated c2ph net-server cvmkdir ldapmodify iofile.d join SafeEjectGPU snmpdelta ssh-keyscan phar.phar renice xxd scandeps.pl nettop ppdmerge snmpconf xsltproc osascript pwhich5.28 troff iotop mmroff lex encguess ctf_insert csplit iconv captoinfo snmpinform lsbom pbcopy sort xpath snmpdf whoami sc_usage jot spfquery5.28 ocspcheck prove5.28 mkbom groffer ldapurl json_xs pkgbuild perlivp5.28 cpuwalk.d cvmkfile update_dyld_shared_cache easy_install pydoc ldapmodrdn systemextensionsctl file db_printlog python hash bc fontrestore mg python2 cpanp-run-perl5.18 sfltool less pod2latex bunzip2 pythonw touch asctl rmic dispqlen.d db_archive refer getopt krb5-config security lwp-download5.28 hiutil csdiagnose pip3 enc2xs5.18 lastwords rmid stty5.28.pl podchecker5.18 sed ld awk ip2cc syscallbyproc.d snmpstatus uudecode UnRezWack fmt perlthanks5.18 zipdetails5.28 zless xslt-config sdef pod2man5.18 ncctl jmc encguess5.28 pod2text c2ph5.18 bashbug mail chpass sips xcrun bzcmp lldb python2.7-config piconv5.28 chfn ipcount newaliases nano eyapp5.18 pfbtops lam ipptool irb ipcount5.28 ptardiff bzless perlbug5.28 sysdiagnose logname tset chgrp cu grops printenv unvis grotty atq seq fc AssetCacheManagerUtil colldef jdb wish uname hpmdiagnose timer_analyser.d jstack unzip stty5.18.pl db_stat rmiregistry json_pp zprint kinit mib2c podchecker5.28 od bsdtar perl findrule tbtdiagnose mcxquery lwp-download ppdpo crontab reset kextutil bzcat dbicadmin ex perlthanks5.28 perlbug zipdetails5.18 jvisualvm footprint pod2man5.28 config_data5.18 json_xs5.28 lsappinfo eqn db_load fwkdp piconv read ipcount5.18 perlbug5.18 snmpusm piconv5.18 execsnoop pagesize lp base64 ptargrep eyapp5.28 jar h2ph readlink opensnoop rake rvim jcmd dmc vimtutor phar from prove newproc.d gencat darwinup mdutil znew podchecker mcxrefresh colrm dbilogstrip pagestuff crlrefresh headerdoc2html lwp-dump5.18 tbl jrunscript find2perl filtercalltree afhash sandbox-exec snmpvacm stapler fwkpfv sftp wc jps rsync osacompile cpanp5.18 hdxml2manxml gzcat dbiproxy5.18 delv thermal pico podselect5.18 pydoc2.7 shasum comm resolveLinks lpq java bundle gzip zipcloak git-upload-archive xml2-config encode_keychange traptoemail gcc smbutil diff ri pythonw2.7 agvtool cksum indxbib segedit zipnote ptar printf soelim AssetCacheTetheratorUtil column ldapexop ippfind syscallbysysc.d groups dwarfdump ppdc rs spfd config_data slogin latency lsm xar 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bnepd kextstat cvlabel sendmail systemkeychain kcditto slapcat ipconfig auditreduce cvadmin WirelessRadioManagerd apachectl htcacheclean /sbin: mount_hfs mount_apfs md5 fsck mount_udf quotacheck mount_cd9660 ping fsck_exfat mount_exfat fsck_udf shutdown route mount_webdav fsck_hfs nfsd reboot nfsiod fsck_cs fsck_apfs fstyp_msdos disklabel mount_msdos fsck_msdos ifconfig halt mount_9p mount_ntfs rtsol newfs_apfs umount fstyp kextunload mpioutil fstyp_ntfs emond mount_nfs newfs_udf mount_ftp pfctl mknod fstyp_udf dmesg mount fibreconfig fstyp_hfs newfs_hfs dynamic_pager launchd newfs_exfat apfs_hfs_convert nologin mount_afp mount_smbfs ping6 kextload mount_cddafs mount_fdesc newfs_msdos mount_acfs mount_devfs Warning accessing /usr/texbin gives errors: [Errno 2] No such file or directory: '/usr/texbin' /opt/X11/bin: xfs xfsinfo atobm xdpyinfo showrgb xlsfonts editres fonttosfnt xfontsel xclock xmore xman xmag xrefresh fc-list xauth twm cxpm mkfontdir xclipboard png-fix-itxt beforelight ucs2any xterm bdftruncate xsetroot xmessage xcursorgen fc-pattern xkbvleds xkbbell freetype-config Xephyr fc-validate bitmap libpng16-config pngfix fc-query xkbprint luit xhost gtf listres Xorg libpng-config koi8rxterm xpr xstdcmap xgc mkfontscale setxkbmap xinit Xquartz xbacklight xdm xcmsdb xdpr xrdb xlsclients xprop xkeystone xeyes Xvfb Xnest xev startx xkbwatch xscope xfd sessreg xwud lndir xinput xconsole glxinfo sxpm xsetmode fslsfonts xcompmgr xrandr bmtoa xwd xmodmap glxgears fc-cache iceauth cvt xcutsel bdftopcf fc-cat xsetpointer xkbevd quartz-wm xsm appres xset xlsatoms fc-match oclock resize showfont xditview xwininfo xvinfo xcalc fc-conflist xgamma viewres ico X xedit smproxy xkill xkbcomp xload font_cache xmh xlogo fstobdf uxterm fc-scan /usr/local/git/bin: git-receive-pack gitk git-upload-archive git-credential-osxkeychain git-cvsserver git-shell git-upload-pack git /Library/Frameworks/Python.framework/Versions/3.8/bin: pip3.8 2to3 python3 pip3 easy_install-3.8 python3.8 idle3 python3-config pydoc3.8 idle3.8 python3.8-config pydoc3 2to3-3.8 /opt/local/bin: cpan pod2usage-5.12 tabs msgconv dprofpp perl5.8 enc2xs-5.8 cpanp-run-perl perl5.12.3 runhaskell shasum-5.12 perlcc-5.8 msggrep toe autopoint wget piconv-5.12 s2p-5.8 hp2ps perlivp c_rehash pod2usage cpan2dist-5.12 perlivp-5.8 prove-5.8 gm4 perl5 msgcomm psed-5.8 infotocap libnetcfg ncursesw5-config corelist-5.8 c2ph perl5.12 iconv captoinfo perlivp-5.12 dprofpp-5.8 daemondo cpan-5.12 pstruct-5.8 pod2latex autoupdate263 pod2text autoscan263 psed-5.12 tset ptar-5.12 perl reset perlbug piconv h2ph xmlwf podselect-5.8 autom4te263 splain-5.12 prove podchecker perlbug-5.8 find2perl piconv-5.8 msgen ifnames263 podchecker-5.12 autoheader263 msgmerge gperf perlbug-5.12 hpc envsubst podchecker-5.8 pod2man-5.8 perlthanks-5.8 ncurses5-config ghc-pkg msginit pl2pm c2ph-5.8 dprofpp-5.12 a2p-5.8 clear pod2latex-5.8 libnetcfg-5.12 tic podselect-5.12 perlthanks cpanp s2p-5.12 ghc perldoc-5.8 cpan2dist ghci-6.10.4 xsubpp perldoc idn cpanp-5.12 haddock autoconf263 gettext infocmp gettext.sh h2xs-5.12 msgcmp ghc-6.10.4 pl2pm-5.12 pod2man-5.12 ghc-pkg-6.10.4 h2ph-5.12 msgcat pod2text-5.8 instmodsh-5.12 recode-sr-latin h2ph-5.8 portmirror h2xs xsubpp-5.8 enc2xs-5.12 a2p-5.12 pod2man c2ph-5.12 enc2xs prove-5.12 hasktags msgexec h2xs-5.8 ngettext podselect psed a2p pod2usage-5.8 pod2latex-5.12 pl2pm-5.8 perlthanks-5.12 port msgunfmt pod2html-5.12 tput openssl find2perl-5.12 splain ghci msgfilter pod2html-5.8 config_data-5.12 pstruct pod2html s2p hsc2hs libnetcfg-5.8 portindex perldoc-5.12 runghc portf cpan-5.8 cpanp-run-perl-5.12 pod2text-5.12 msgfmt perl5.8.9 instmodsh-5.8 corelist-5.12 msgattrib autoreconf263 xgettext pstruct-5.12 ptardiff-5.12 xsubpp-5.12 find2perl-5.8 gettextize msguniq help2man splain-5.8 /opt/local/sbin: .turd_MacPorts /usr/X11/bin: xfs xfsinfo atobm xdpyinfo showrgb xlsfonts editres fonttosfnt xfontsel xclock xmore xman xmag xrefresh fc-list xauth twm cxpm mkfontdir xclipboard png-fix-itxt beforelight ucs2any xterm bdftruncate xsetroot xmessage xcursorgen fc-pattern xkbvleds xkbbell freetype-config Xephyr fc-validate bitmap libpng16-config pngfix fc-query xkbprint luit xhost gtf listres Xorg libpng-config koi8rxterm xpr xstdcmap xgc mkfontscale setxkbmap xinit Xquartz xbacklight xdm xcmsdb xdpr xrdb xlsclients xprop xkeystone xeyes Xvfb Xnest xev startx xkbwatch xscope xfd sessreg xwud lndir xinput xconsole glxinfo sxpm xsetmode fslsfonts xcompmgr xrandr bmtoa xwd xmodmap glxgears fc-cache iceauth cvt xcutsel bdftopcf fc-cat xsetpointer xkbevd quartz-wm xsm appres xset xlsatoms fc-match oclock resize showfont xditview xwininfo xvinfo xcalc fc-conflist xgamma viewres ico X xedit smproxy xkill xkbcomp xload font_cache xmh xlogo fstobdf uxterm fc-scan /usr/local/texlive/2019/bin/x86_64-darwin: luajittex lollipop t1disasm chktex rubikrotation lily-rebuild-pdfs weave mag man ebb prepmx mktexlsr gsftopk upmendex dvibook kpsewhere rumakeindex fontinst cef5conv lacheck httexi lily-image-commands texloganalyser dvilj patgen uptex exceltex pdvitype texconfig-sys xmltex vlna texsis dvipdft urlbst pdfcslatex afm2afm cefconv uplatex-dev sjisconv tex2xindy musixtex pdfcsplain opl2ofm de-macro bbl2bib ltx2crossrefxml pdftex r-mpost dvitodvi gftodvi dviconcat texluajitc dvipng pdflatex-dev komkindex tex sty2dtx ppltotf yplan eplain eptex lily-glyph-commands htmex texlua htxelatex xasy fmtutil-user wovp2ovf dvilualatex cefsconv context platex allec adhocfilelist kpsetool makejvf texdoctk xelatex-dev vptovf tex4ht texluajit mtxrunjit uplatex musixflx pfarrei mf latexdiff-vc ttfdump etex fig4latex bibexport ttf2tfm latexmk pmpost ctwill pst2pdf wordcount texconfig-dialog luahbtex lwarpmk dvilj2p dviinfox ttf2kotexfont ctanbib cweave bg5+latex pdfatfi ptex2pdf e2pall kpsewhich upbibtex texdiff mathspic kanji-fontmap-creator kanji-config-updmap asy typeoutfileinfo chklref upmpost pdflatex perltex mkt1font cefslatex cjk-gs-integrate chkdvifont dvitype pdfjadetex t1lint jamo-normalize fmtutil-sys wofm2opl dviasm kpsestat pdfxup makedtx pltotf mkindex dvilj6 r-pmpost xindy.mem xetex latex ps4pdf multibibliography teckit_compile ttf2afm biburl2doi getmapdl uptftopl contextjit bib2gls texplate match_parens mkjobtexmf updvitomp ps2eps pkfix-helper chkweb arlatex pn2pdf pdfclose xindex clxelatex dosepsbin jadetex a2ping bibzbladd ovf2ovp mfluajit-nowin mpost texosquery-jre5 texhash convbkmk thumbpdf pkfix dvihp hbf2gf xindy.run texcount texmfstart latexrevise cefpdflatex texluac dvicopy lua2dox_filter ctie pdftex-quiet euptex pdftosrc mf-nowin ctangle omfonts t1asm mflua-nowin cluttex svn-multi mk4ht afm2tfm pdfopen fragmaster ebong ctanify pygmentex texdef luatex cslatex synctex texdirflatten gbkpdflatex xdvipdfmx sjispdflatex makeindex dviluatex mkofm dvipdfmx psbook dvispc csplain ttftotype42 mft t1rawafm fmtutil ctwill-twinx simpdftex depythontex otfinfo latexindent kanji-config-updmap-sys extconv disdvi pdvitomp dvipdfm texliveonfly allneeded htcontext t1testpage biber dv2dt xindy pdfbook2 t1unmac xelatex webquiz kpsepath diadia makeglossaries cef5pdflatex autoinst dvilualatex-dev mkpic splitindex repstopdf otangle mfplain latexfileversion latex-git-log inimf lualatex-dev latex2man ps2pk htxetex l3build ptftopl ptex gbklatex t1binary bibtex t1dotlessj mktexpk detex htlatex odvicopy dvidvi extractres extractbb tie latexdef tlmgr arara ctan-o-mat rubibtex dvigif gftype ketcindy kpseaccess luacsplain cachepic srcredact dtxgen mmafm pktype platex-dev kpsexpand pktogf msxlint t1reencode vftovp xhlatex ht mendex make4ht ceflatex texlinks pmxchords mptopdf afm2pl mktexmf lamed gftopk ulqda dvilj4l pooltype bg5latex bibmradd aleph wovf2ovp pdfetex dvi2tty ofm2opl pslatex initex latexpand pamphletangler mkgrkindex mtxrun epsffit listings-ext.sh mktexfmt scor2prt psnup ot2kpx allcm pk2bm dvitomp texindy vpl2vpl luatools cef5latex ctwill-refsort bg5+pdflatex dvisvgm tex2aspc bg5conv deweb tlcockpit cfftot1 dviselect odvitype vpl2ovp otp2ocp latexdiff dt2dv bg5pdflatex mf2pt1 psresize t1mac epspdf pythontex bibtexu authorindex texosquery tlshell pdfxmltex includeres t1ascii pdflatexpicscale mfluajit axohelp tangle httex texosquery-jre8 checkcites bibtex8 dvi2fax otftotfm cefspdflatex mmpfb pfb2pfa vpe psselect latex-dev findhyph gregorio ovp2ovf utf8mex mflua purifyeps autosp bundledoc mllatex tex4ebook xdvi-xaw sjislatex rungs dvilj4 ltxfileinfo texconfig updvitype ltximg updmap-user dvips convertgls2bib latex2nemeth pdfjam epstopdf outocp pedigree mkocp kpsereadlink ttf2pk tpic2pdftex kanji-config-updmap-user psjoin m-tx uppltotf texdoc bbox dvired latex-papersize makeglossaries-lite t4ht xdvi ps2frag wopl2ofm devnag ctanupload texexec listbib cllualatex lualatex pmxab jfmutil pdfmex tftopl mltex amstex pbibtex pstops optex mex bibdoiadd updmap dvipos luaotfload-tool epspdftk updmap-sys r-upmpost mktextfm texfot checklistings rpdfcrop a5toa4 installfont-tl pdfcrop pdfannotextractor /usr/local/cuda/bin: bin2c filehash fatbinary cuda-binary-gdb nvcc.profile nvcc ptxas cuobjdump cudafe++ cuda-memcheck fatbin cudafe cuda-gdb Warning accessing /usr/local/gmt/bin gives errors: [Errno 2] No such file or directory: '/usr/local/gmt/bin' /usr/local/bin: pip3.7 lzmainfo dvipdf pip-2.6 tryaffix pyrsa-sign pip3.8 cluster pildriver.py munchlist ps2ps nctoh5 gv2gml xzdec font2c tred ptrepack pv.sh gdb docker unflatten gs-noX11 callgrind_control notary pip2 gfortran mm2gv 2to3 bdftops hyperkit python3 gs dot apm pyrsa-priv2pub easy_install ispell cg_merge dul-daemon atom pip3 docker-compose-v1 easy_install-3.8 gvpack pyrsa-encrypt-bigfile ps2pdfwr ps2pdf12 defmt-c lefty lneato gsdj vgdb pdf2dsc docker-credential-ecr-login graphml2gv pilconvert.py kubectl.docker ps2pdf14 buildhash brew gsnd ps2pdf13 fab mako-render cython texdist logtool gs-X11 python3.8 sccmap gvmap docker-credential-osxkeychain idle3 ijoin cg_diff pilfile.py xz pphs gsdj500 defmt-sh dumphint chardetect ps2ascii findaffix runalyzer-gather gv-fc-cache easy_install-2.6 fixmswrd.pl cg_annotate pyrsa-keygen python3-config f2py ps2pdf pip pf2afm pilfont.py pfbtopfa icombine valgrind-listener gvgen docker-credential-desktop pyrsa-decrypt com.docker.cli pipdate3 gvpr nop xzless cygdb gslp pygmentize gxl2gv runalyzer printafm vpnkit acyclic gml2gv ps2ps2 pyrsa-encrypt pcretest pdfopt gslj ps2epsi hub-tool hg gc pydoc3.8 gsbj unix-lpr.sh meshio-convert callgrind_annotate dijkstra pip2.7 valgrind-di-server gvmap.sh pcre-config dot_builtins prune pdf2ps lzmadec node eps2eps idle3.8 docker-compose lprsetup.sh cythonize virtualenv bcomps ptdump kubectl wftopfa python3.8-config ccomps xzmore pilprint.py dul-web xzgrep pydoc3 pipdate valgrind pyrsa-verify dotty npm vimdot 2to3-3.8 bzr xzdiff gvcolor pcregrep convert pyrsa-decrypt-bigfile ms_print dulwich /usr/X11/bin: xfs xfsinfo atobm xdpyinfo showrgb xlsfonts editres fonttosfnt xfontsel xclock xmore xman xmag xrefresh fc-list xauth twm cxpm mkfontdir xclipboard png-fix-itxt beforelight ucs2any xterm bdftruncate xsetroot xmessage xcursorgen fc-pattern xkbvleds xkbbell freetype-config Xephyr fc-validate bitmap libpng16-config pngfix fc-query xkbprint luit xhost gtf listres Xorg libpng-config koi8rxterm xpr xstdcmap xgc mkfontscale setxkbmap xinit Xquartz xbacklight xdm xcmsdb xdpr xrdb xlsclients xprop xkeystone xeyes Xvfb Xnest xev startx xkbwatch xscope xfd sessreg xwud lndir xinput xconsole glxinfo sxpm xsetmode fslsfonts xcompmgr xrandr bmtoa xwd xmodmap glxgears fc-cache iceauth cvt xcutsel bdftopcf fc-cat xsetpointer xkbevd quartz-wm xsm appres xset xlsatoms fc-match oclock resize showfont xditview xwininfo xvinfo xcalc fc-conflist xgamma viewres ico X xedit smproxy xkill xkbcomp xload font_cache xmh xlogo fstobdf uxterm fc-scan /usr/local/texlive/2019/bin/x86_64-darwin: luajittex lollipop t1disasm chktex rubikrotation lily-rebuild-pdfs weave mag man ebb prepmx mktexlsr gsftopk upmendex dvibook kpsewhere rumakeindex fontinst cef5conv lacheck httexi lily-image-commands texloganalyser dvilj patgen uptex exceltex pdvitype texconfig-sys xmltex vlna texsis dvipdft urlbst pdfcslatex afm2afm cefconv uplatex-dev sjisconv tex2xindy musixtex pdfcsplain opl2ofm de-macro bbl2bib ltx2crossrefxml pdftex r-mpost dvitodvi gftodvi dviconcat texluajitc dvipng pdflatex-dev komkindex tex sty2dtx ppltotf yplan eplain eptex lily-glyph-commands htmex texlua htxelatex xasy fmtutil-user wovp2ovf dvilualatex cefsconv context platex allec adhocfilelist kpsetool makejvf texdoctk xelatex-dev vptovf tex4ht texluajit mtxrunjit uplatex musixflx pfarrei mf latexdiff-vc ttfdump etex fig4latex bibexport ttf2tfm latexmk pmpost ctwill pst2pdf wordcount texconfig-dialog luahbtex lwarpmk dvilj2p dviinfox ttf2kotexfont ctanbib cweave bg5+latex pdfatfi ptex2pdf e2pall kpsewhich upbibtex texdiff mathspic kanji-fontmap-creator kanji-config-updmap asy typeoutfileinfo chklref upmpost pdflatex perltex mkt1font cefslatex cjk-gs-integrate chkdvifont dvitype pdfjadetex t1lint jamo-normalize fmtutil-sys wofm2opl dviasm kpsestat pdfxup makedtx pltotf mkindex dvilj6 r-pmpost xindy.mem xetex latex ps4pdf multibibliography teckit_compile ttf2afm biburl2doi getmapdl uptftopl contextjit bib2gls texplate match_parens mkjobtexmf updvitomp ps2eps pkfix-helper chkweb arlatex pn2pdf pdfclose xindex clxelatex dosepsbin jadetex a2ping bibzbladd ovf2ovp mfluajit-nowin mpost texosquery-jre5 texhash convbkmk thumbpdf pkfix dvihp hbf2gf xindy.run texcount texmfstart latexrevise cefpdflatex texluac dvicopy lua2dox_filter ctie pdftex-quiet euptex pdftosrc mf-nowin ctangle omfonts t1asm mflua-nowin cluttex svn-multi mk4ht afm2tfm pdfopen fragmaster ebong ctanify pygmentex texdef luatex cslatex synctex texdirflatten gbkpdflatex xdvipdfmx sjispdflatex makeindex dviluatex mkofm dvipdfmx psbook dvispc csplain ttftotype42 mft t1rawafm fmtutil ctwill-twinx simpdftex depythontex otfinfo latexindent kanji-config-updmap-sys extconv disdvi pdvitomp dvipdfm texliveonfly allneeded htcontext t1testpage biber dv2dt xindy pdfbook2 t1unmac xelatex webquiz kpsepath diadia makeglossaries cef5pdflatex autoinst dvilualatex-dev mkpic splitindex repstopdf otangle mfplain latexfileversion latex-git-log inimf lualatex-dev latex2man ps2pk htxetex l3build ptftopl ptex gbklatex t1binary bibtex t1dotlessj mktexpk detex htlatex odvicopy dvidvi extractres extractbb tie latexdef tlmgr arara ctan-o-mat rubibtex dvigif gftype ketcindy kpseaccess luacsplain cachepic srcredact dtxgen mmafm pktype platex-dev kpsexpand pktogf msxlint t1reencode vftovp xhlatex ht mendex make4ht ceflatex texlinks pmxchords mptopdf afm2pl mktexmf lamed gftopk ulqda dvilj4l pooltype bg5latex bibmradd aleph wovf2ovp pdfetex dvi2tty ofm2opl pslatex initex latexpand pamphletangler mkgrkindex mtxrun epsffit listings-ext.sh mktexfmt scor2prt psnup ot2kpx allcm pk2bm dvitomp texindy vpl2vpl luatools cef5latex ctwill-refsort bg5+pdflatex dvisvgm tex2aspc bg5conv deweb tlcockpit cfftot1 dviselect odvitype vpl2ovp otp2ocp latexdiff dt2dv bg5pdflatex mf2pt1 psresize t1mac epspdf pythontex bibtexu authorindex texosquery tlshell pdfxmltex includeres t1ascii pdflatexpicscale mfluajit axohelp tangle httex texosquery-jre8 checkcites bibtex8 dvi2fax otftotfm cefspdflatex mmpfb pfb2pfa vpe psselect latex-dev findhyph gregorio ovp2ovf utf8mex mflua purifyeps autosp bundledoc mllatex tex4ebook xdvi-xaw sjislatex rungs dvilj4 ltxfileinfo texconfig updvitype ltximg updmap-user dvips convertgls2bib latex2nemeth pdfjam epstopdf outocp pedigree mkocp kpsereadlink ttf2pk tpic2pdftex kanji-config-updmap-user psjoin m-tx uppltotf texdoc bbox dvired latex-papersize makeglossaries-lite t4ht xdvi ps2frag wopl2ofm devnag ctanupload texexec listbib cllualatex lualatex pmxab jfmutil pdfmex tftopl mltex amstex pbibtex pstops optex mex bibdoiadd updmap dvipos luaotfload-tool epspdftk updmap-sys r-upmpost mktextfm texfot checklistings rpdfcrop a5toa4 installfont-tl pdfcrop pdfannotextractor /usr/local/cuda/bin: bin2c filehash fatbinary cuda-binary-gdb nvcc.profile nvcc ptxas cuobjdump cudafe++ cuda-memcheck fatbin cudafe cuda-gdb Warning accessing /usr/local/gmt/bin gives errors: [Errno 2] No such file or directory: '/usr/local/gmt/bin' ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:1028) serialEvaluation: initial cxxDialectRanges ('c++03', 'c++17') serialEvaluation: new cxxDialectRanges ('c++03', 'c++17') child config.utilities.macosFirewall 0.000249 ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking for program /PETSc3/cig/bin/lldb...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/lldb...not found Checking for program /PETSc3/petsc/apple/bin/lldb...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/lldb...not found Checking for program /opt/local/bin/lldb...not found Checking for program /opt/local/sbin/lldb...not found Checking for program /usr/local/bin/lldb...not found Checking for program /usr/bin/lldb...found Defined make macro "LLDB" to "/usr/bin/lldb" Defined "USE_DEBUGGER" to ""lldb"" Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking for program /PETSc3/cig/bin/dsymutil...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/dsymutil...not found Checking for program /PETSc3/petsc/apple/bin/dsymutil...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/dsymutil...not found Checking for program /opt/local/bin/dsymutil...not found Checking for program /opt/local/sbin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...found Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Defined "DO_NOT_SWAP_CHILD_FOR_DEBUGGER" to "1" child config.utilities.debuggers 0.081776 ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 16 #define PETSC_VERSION_SUBMINOR 1 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.002537 ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.001977 ============================================================================================= TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /PETSc3/cig/bin/git...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/git...not found Checking for program /PETSc3/petsc/apple/bin/git...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/git...not found Checking for program /opt/local/bin/git...not found Checking for program /opt/local/sbin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.24.2 (Apple Git-127) ============================================================================================= TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /PETSc3/cig/bin/hg...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/hg...not found Checking for program /PETSc3/petsc/apple/bin/hg...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/hg...not found Checking for program /opt/local/bin/hg...not found Checking for program /opt/local/sbin/hg...not found Checking for program /usr/local/bin/hg...found Defined make macro "HG" to "hg" Executing: hg version -q child config.sourceControl 0.131622 ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.16.0-473-g546643b376b Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 546643b376b49ec09cbc26302476187e63b5e5a7 Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2021-11-18 15:56:44 -0500 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: knepley/feature-plex-multiple-hybrid Defined "VERSION_GIT" to ""v3.16.0-473-g546643b376b"" Defined "VERSION_DATE_GIT" to ""2021-11-18 15:56:44 -0500"" Defined "VERSION_BRANCH_GIT" to ""knepley/feature-plex-multiple-hybrid"" child PETSc.options.petscclone 1.234604 ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set ============================================================================================= Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-master-debug, ignoring environment: arch-pylith-debug ============================================================================================= configure hash file: arch-master-debug/lib/petsc/conf/configure-hash does not match, need to run configure Setting hashfile: arch-master-debug/lib/petsc/conf/configure-hash Deleting configure hash file: arch-master-debug/lib/petsc/conf/configure-hash Deleted configure hash file: arch-master-debug/lib/petsc/conf/configure-hash child PETSc.options.arch 0.064520 ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:32) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/PETSc3/petsc/petsc-pylith/arch-master-debug" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:76) ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:69) ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:53) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /PETSc3/petsc/petsc-pylith/arch-master-debug/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:89) child PETSc.options.installDir 0.001301 ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000447 ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000548 ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:2101) ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:2131) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:2071) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:2092) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:604) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPFLAGS to Initialized HIPFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to Initialized SYCLPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:787) Locate a functional C compiler Checking for program /PETSc3/petsc/apple/bin/mpincc...not found Checking for program /PETSc3/petsc/petsc-pylith/lib/petsc/bin/win32fe/mpincc...not found Unable to find programs: ['mpincc'] in listing of the specific search path: ['/PETSc3/petsc/apple/bin'] /PETSc3/petsc/apple/bin: mpiexec.dSYM ccmake h5perf mpif90 hydra_pmi_proxy.dSYM hydra_pmi_proxy h5copy h52gif h5pcc h5perf_serial mpirun cmake h5unjam mpiexec.hydra h5stat h5ls gif2h5 h5jam mpivars h5mkgrp mpif77 h5format_convert h5repack mpichversion mpicc h5watch h5pfc ctest parkill mpicxx h5diff h5clear h5redeploy h5debug ph5diff h5repart h5import hydra_persist mpiexec mpic++ mpifort hydra_nameserver cpack h5dump Checking for program /PETSc3/petsc/apple/bin/mpiicc...not found Checking for program /PETSc3/petsc/petsc-pylith/lib/petsc/bin/win32fe/mpiicc...not found Unable to find programs: ['mpiicc'] in listing of the specific search path: ['/PETSc3/petsc/apple/bin'] /PETSc3/petsc/apple/bin: mpiexec.dSYM ccmake h5perf mpif90 hydra_pmi_proxy.dSYM hydra_pmi_proxy h5copy h52gif h5pcc h5perf_serial mpirun cmake h5unjam mpiexec.hydra h5stat h5ls gif2h5 h5jam mpivars h5mkgrp mpif77 h5format_convert h5repack mpichversion mpicc h5watch h5pfc ctest parkill mpicxx h5diff h5clear h5redeploy h5debug ph5diff h5repart h5import hydra_persist mpiexec mpic++ mpifort hydra_nameserver cpack h5dump Checking for program /PETSc3/petsc/apple/bin/mpicc...found Defined make macro "CC" to "/PETSc3/petsc/apple/bin/mpicc" ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation): ======== Checking running linked program ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Testing executable /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest to see if it can be run Executing: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest Executing: /PETSc3/petsc/apple/bin/mpicc --version stdout: Apple clang version 11.0.3 (clang-1103.0.32.59) Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:826) Locate a functional C preprocessor Checking for program /PETSc3/petsc/apple/bin/mpicc...found Defined make macro "CPP" to "/PETSc3/petsc/apple/bin/mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:862) Locate a functional CUDA compiler Checking for program /PETSc3/cig/bin/nvcc...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/nvcc...not found Checking for program /PETSc3/petsc/apple/bin/nvcc...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/nvcc...not found Checking for program /opt/local/bin/nvcc...not found Checking for program /opt/local/sbin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /usr/texbin/nvcc...not found Checking for program /opt/X11/bin/nvcc...not found Checking for program /usr/local/git/bin/nvcc...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/nvcc...not found Checking for program /opt/local/bin/nvcc...not found Checking for program /opt/local/sbin/nvcc...not found Checking for program /usr/X11/bin/nvcc...not found Checking for program /usr/local/texlive/2019/bin/x86_64-darwin/nvcc...not found Checking for program /usr/local/cuda/bin/nvcc...found Defined make macro "CUDAC" to "nvcc" ===== Checking compiler Executing: nvcc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -Wno-deprecated-gpu-targets /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 126 stderr: /bin/sh: /usr/local/cuda/bin/nvcc: Bad CPU type in executable Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Error testing CUDA compiler: Cannot compile CUDA with nvcc. Deleting "CUDAC" Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /PETSc3/petsc/petsc-pylith/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs: ['nvcc'] in listing of the specific search path: ['/Developer/NVIDIA/CUDA-6.5/bin'] Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: [Errno 2] No such file or directory: '/Developer/NVIDIA/CUDA-6.5/bin' Checking for program /usr/local/cuda/bin/nvcc...found Defined make macro "CUDAC" to "/usr/local/cuda/bin/nvcc" ===== Checking compiler Executing: /usr/local/cuda/bin/nvcc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -Wno-deprecated-gpu-targets /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 126 stderr: /bin/sh: /usr/local/cuda/bin/nvcc: Bad CPU type in executable Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Error testing CUDA compiler: Cannot compile CUDA with /usr/local/cuda/bin/nvcc. Deleting "CUDAC" ============================================================================================= TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:902) Locate a functional CUDA preprocessor ============================================================================================= TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:936) Locate a functional HIP compiler Checking for program /PETSc3/cig/bin/hipcc...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/hipcc...not found Checking for program /PETSc3/petsc/apple/bin/hipcc...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/hipcc...not found Checking for program /opt/local/bin/hipcc...not found Checking for program /opt/local/sbin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /bin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /sbin/hipcc...not found Checking for program /usr/texbin/hipcc...not found Checking for program /opt/X11/bin/hipcc...not found Checking for program /usr/local/git/bin/hipcc...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/hipcc...not found Checking for program /opt/local/bin/hipcc...not found Checking for program /opt/local/sbin/hipcc...not found Checking for program /usr/X11/bin/hipcc...not found Checking for program /usr/local/texlive/2019/bin/x86_64-darwin/hipcc...not found Checking for program /usr/local/cuda/bin/hipcc...not found Checking for program /usr/local/gmt/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/X11/bin/hipcc...not found Checking for program /usr/local/texlive/2019/bin/x86_64-darwin/hipcc...not found Checking for program /usr/local/cuda/bin/hipcc...not found Checking for program /usr/local/gmt/bin/hipcc...not found Checking for program /PETSc3/petsc/petsc-pylith/lib/petsc/bin/win32fe/hipcc...not found Checking for program /PETSc3/cig/bin/opt/rocm/bin/hipcc...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/opt/rocm/bin/hipcc...not found Checking for program /PETSc3/petsc/apple/bin/opt/rocm/bin/hipcc...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/local/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/local/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /bin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/texbin/opt/rocm/bin/hipcc...not found Checking for program /opt/X11/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/git/bin/opt/rocm/bin/hipcc...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/local/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/local/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/X11/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/texlive/2019/bin/x86_64-darwin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/cuda/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/gmt/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/X11/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/texlive/2019/bin/x86_64-darwin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/cuda/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/gmt/bin/opt/rocm/bin/hipcc...not found Checking for program /PETSc3/petsc/petsc-pylith/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found ============================================================================================= TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:979) Locate a functional HIP preprocessor ============================================================================================= TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1010) Locate a functional SYCL compiler ============================================================================================= TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1036) Placeholder for now ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1127) Locate a functional Cxx compiler Checking for program /PETSc3/petsc/apple/bin/mpinc++...not found Checking for program /PETSc3/petsc/petsc-pylith/lib/petsc/bin/win32fe/mpinc++...not found Unable to find programs: ['mpinc++'] in listing of the specific search path: ['/PETSc3/petsc/apple/bin'] /PETSc3/petsc/apple/bin: mpiexec.dSYM ccmake h5perf mpif90 hydra_pmi_proxy.dSYM hydra_pmi_proxy h5copy h52gif h5pcc h5perf_serial mpirun cmake h5unjam mpiexec.hydra h5stat h5ls gif2h5 h5jam mpivars h5mkgrp mpif77 h5format_convert h5repack mpichversion mpicc h5watch h5pfc ctest parkill mpicxx h5diff h5clear h5redeploy h5debug ph5diff h5repart h5import hydra_persist mpiexec mpic++ mpifort hydra_nameserver cpack h5dump Checking for program /PETSc3/petsc/apple/bin/mpinc++...not found Checking for program /PETSc3/petsc/petsc-pylith/lib/petsc/bin/win32fe/mpinc++...not found Unable to find programs: ['mpinc++'] in listing of the specific search path: ['/PETSc3/petsc/apple/bin'] /PETSc3/petsc/apple/bin: mpiexec.dSYM ccmake h5perf mpif90 hydra_pmi_proxy.dSYM hydra_pmi_proxy h5copy h52gif h5pcc h5perf_serial mpirun cmake h5unjam mpiexec.hydra h5stat h5ls gif2h5 h5jam mpivars h5mkgrp mpif77 h5format_convert h5repack mpichversion mpicc h5watch h5pfc ctest parkill mpicxx h5diff h5clear h5redeploy h5debug ph5diff h5repart h5import hydra_persist mpiexec mpic++ mpifort hydra_nameserver cpack h5dump Checking for program /PETSc3/petsc/apple/bin/mpinc++...not found Checking for program /PETSc3/petsc/petsc-pylith/lib/petsc/bin/win32fe/mpinc++...not found Unable to find programs: ['mpinc++'] in listing of the specific search path: ['/PETSc3/petsc/apple/bin'] /PETSc3/petsc/apple/bin: mpiexec.dSYM ccmake h5perf mpif90 hydra_pmi_proxy.dSYM hydra_pmi_proxy h5copy h52gif h5pcc h5perf_serial mpirun cmake h5unjam mpiexec.hydra h5stat h5ls gif2h5 h5jam mpivars h5mkgrp mpif77 h5format_convert h5repack mpichversion mpicc h5watch h5pfc ctest parkill mpicxx h5diff h5clear h5redeploy h5debug ph5diff h5repart h5import hydra_persist mpiexec mpic++ mpifort hydra_nameserver cpack h5dump Checking for program /PETSc3/petsc/apple/bin/mpiicpc...not found Checking for program /PETSc3/petsc/petsc-pylith/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs: ['mpiicpc'] in listing of the specific search path: ['/PETSc3/petsc/apple/bin'] /PETSc3/petsc/apple/bin: mpiexec.dSYM ccmake h5perf mpif90 hydra_pmi_proxy.dSYM hydra_pmi_proxy h5copy h52gif h5pcc h5perf_serial mpirun cmake h5unjam mpiexec.hydra h5stat h5ls gif2h5 h5jam mpivars h5mkgrp mpif77 h5format_convert h5repack mpichversion mpicc h5watch h5pfc ctest parkill mpicxx h5diff h5clear h5redeploy h5debug ph5diff h5repart h5import hydra_persist mpiexec mpic++ mpifort hydra_nameserver cpack h5dump Checking for program /PETSc3/petsc/apple/bin/mpiicpc...not found Checking for program /PETSc3/petsc/petsc-pylith/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs: ['mpiicpc'] in listing of the specific search path: ['/PETSc3/petsc/apple/bin'] /PETSc3/petsc/apple/bin: mpiexec.dSYM ccmake h5perf mpif90 hydra_pmi_proxy.dSYM hydra_pmi_proxy h5copy h52gif h5pcc h5perf_serial mpirun cmake h5unjam mpiexec.hydra h5stat h5ls gif2h5 h5jam mpivars h5mkgrp mpif77 h5format_convert h5repack mpichversion mpicc h5watch h5pfc ctest parkill mpicxx h5diff h5clear h5redeploy h5debug ph5diff h5repart h5import hydra_persist mpiexec mpic++ mpifort hydra_nameserver cpack h5dump Checking for program /PETSc3/petsc/apple/bin/mpiicpc...not found Checking for program /PETSc3/petsc/petsc-pylith/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs: ['mpiicpc'] in listing of the specific search path: ['/PETSc3/petsc/apple/bin'] /PETSc3/petsc/apple/bin: mpiexec.dSYM ccmake h5perf mpif90 hydra_pmi_proxy.dSYM hydra_pmi_proxy h5copy h52gif h5pcc h5perf_serial mpirun cmake h5unjam mpiexec.hydra h5stat h5ls gif2h5 h5jam mpivars h5mkgrp mpif77 h5format_convert h5repack mpichversion mpicc h5watch h5pfc ctest parkill mpicxx h5diff h5clear h5redeploy h5debug ph5diff h5repart h5import hydra_persist mpiexec mpic++ mpifort hydra_nameserver cpack h5dump Checking for program /PETSc3/petsc/apple/bin/mpicxx...found Defined make macro "CXX" to "/PETSc3/petsc/apple/bin/mpicxx" ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation): ======== Checking running linked program ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Testing executable /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest to see if it can be run Executing: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest Executing: /PETSc3/petsc/apple/bin/mpicxx --version stdout: Apple clang version 11.0.3 (clang-1103.0.32.59) Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin ============================================================================================= TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1168) Locate a functional Cxx preprocessor Checking for program /PETSc3/petsc/apple/bin/mpicxx...found Defined make macro "CXXPP" to "/PETSc3/petsc/apple/bin/mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicxx -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1271) Locate a functional Fortran compiler ============================================================================================= TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1507) ============================================================================================= TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1606) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V Executing: ar -V Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /PETSc3/cig/bin/ar...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/ar...not found Checking for program /PETSc3/petsc/apple/bin/ar...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/ar...not found Checking for program /opt/local/bin/ar...not found Checking for program /opt/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /PETSc3/cig/bin/ranlib...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/ranlib...not found Checking for program /PETSc3/petsc/apple/bin/ranlib...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/ranlib...not found Checking for program /opt/local/bin/ranlib...not found Checking for program /opt/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/libconf1.a /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/libconf1.a ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c:6:26: warning: if statement has empty body [-Wempty-body] int b = foo(1); if (b); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c:6:26: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -L/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ============================================================================================= TESTING: checkArchiverRecipeArgfile from config.setCompilers(config/BuildSystem/config/setCompilers.py:1670) Checks if AR handles @ notation Executing: /usr/bin/ar cr checkRecipeArgfile.a @checkRecipeArgfile.args Possible ERROR while running archiver: exit code 1 stderr: ar: @checkRecipeArgfile.args: No such file or directory ============================================================================================= TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1752) Check that the linker can produce shared libraries Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking shared linker /PETSc3/petsc/apple/bin/mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress', '-no_compact_unwind'] Checking for program /PETSc3/petsc/apple/bin/mpicc...found Defined make macro "LD_SHARED" to "/PETSc3/petsc/apple/bin/mpicc" Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt Executing: /PETSc3/petsc/apple/bin/mpicc -qversion Executing: /PETSc3/petsc/apple/bin/mpicc -show stdout: /Users/knepley/MacSoftware/bin/ccache gcc -fstack-protector -g3 -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/PETSc3/petsc/apple/include -L/PETSc3/petsc/apple/lib -lmpi -lpmpi Trying C compiler flag -PIC Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -PIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument '-PIC'; did you mean '-fPIC'? Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -PIC clang: error: unknown argument '-PIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejecting compiler flag -PIC due to nonzero status from link Rejected C compiler flag -PIC because it was not compatible with shared linker /PETSc3/petsc/apple/bin/mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress', '-no_compact_unwind'] Trying C compiler flag -qPIC Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -qPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument '-qPIC'; did you mean '-fPIC'? Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -qPIC clang: error: unknown argument '-qPIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejecting compiler flag -qPIC due to nonzero status from link Rejected C compiler flag -qPIC because it was not compatible with shared linker /PETSc3/petsc/apple/bin/mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress', '-no_compact_unwind'] Trying C compiler flag -KPIC Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -KPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument '-KPIC'; did you mean '-fPIC'? Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -KPIC clang: error: unknown argument '-KPIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejecting compiler flag -KPIC due to nonzero status from link Rejected C compiler flag -KPIC because it was not compatible with shared linker /PETSc3/petsc/apple/bin/mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress', '-no_compact_unwind'] Trying C compiler flag -fPIC Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC Added C compiler flag -fPIC Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -dynamiclib -single_module -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Valid C linker flag -dynamiclib -single_module Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -undefined dynamic_lookup -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Valid C linker flag -undefined dynamic_lookup Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -multiply_defined suppress -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Valid C linker flag -multiply_defined suppress Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -no_compact_unwind -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: clang: error: unknown argument: '-no_compact_unwind' Rejecting linker flag -no_compact_unwind due to nonzero status from link Linker output before filtering: clang: error: unknown argument: '-no_compact_unwind' : Linker output after filtering: clang: error: unknown argument: '-no_compact_unwind': ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -L/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -lconftest Using shared linker /PETSc3/petsc/apple/bin/mpicc with flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] and library extension dylib Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS ============================================================================================= TESTING: checkLinkerMac from config.setCompilers(config/BuildSystem/config/setCompilers.py:1827) Tests some Apple Mac specific linker flags Defined "PETSC_USING_DARWIN" to "1" Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -Wl,-bind_at_load -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Valid C linker flag -Wl,-bind_at_load Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-bind_at_load -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined,suppress Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined -Wl,suppress Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Valid C linker flag -Wl,-commons,use_dylibs Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Valid C linker flag -Wl,-search_paths_first Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Valid C linker flag -Wl,-no_compact_unwind Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -Wl,-bind_at_load /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-bind_at_load Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-bind_at_load /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined,suppress Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined -Wl,suppress Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-commons,use_dylibs Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-search_paths_first Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-no_compact_unwind Executing: uname -s stdout: Darwin ============================================================================================= TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1450) Determine the PIC option for each compiler Executing: /PETSc3/petsc/apple/bin/mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt Executing: /PETSc3/petsc/apple/bin/mpicxx -qversion Executing: /PETSc3/petsc/apple/bin/mpicxx -show stdout: /Users/knepley/MacSoftware/bin/ccache g++ -fstack-protector -g -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/PETSc3/petsc/apple/include -L/PETSc3/petsc/apple/lib -lmpicxx -lmpi -lpmpi Trying Cxx compiler flag -PIC for PIC code Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -PIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument '-PIC'; did you mean '-fPIC'? Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -PIC clang: error: unknown argument '-PIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejecting compiler flag -PIC due to nonzero status from link Rejected Cxx compiler flag -PIC because shared linker cannot handle it Trying Cxx compiler flag -qPIC for PIC code Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -qPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument '-qPIC'; did you mean '-fPIC'? Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -qPIC clang: error: unknown argument '-qPIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejecting compiler flag -qPIC due to nonzero status from link Rejected Cxx compiler flag -qPIC because shared linker cannot handle it Trying Cxx compiler flag -KPIC for PIC code Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -KPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument '-KPIC'; did you mean '-fPIC'? Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -KPIC clang: error: unknown argument '-KPIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejecting compiler flag -KPIC due to nonzero status from link Rejected Cxx compiler flag -KPIC because shared linker cannot handle it Trying Cxx compiler flag -fPIC for PIC code Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC Added Cxx compiler flag -fPIC ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC for PIC code ============================================================================================= TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1866) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: /PETSc3/petsc/apple/bin/mpicc -V Trying C linker flag -Wl,-rpath, Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -Wl,-rpath,/PETSc3/petsc/petsc-pylith -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/PETSc3/petsc/petsc-pylith Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: /PETSc3/petsc/apple/bin/mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -Wl,-rpath,/PETSc3/petsc/petsc-pylith -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/PETSc3/petsc/petsc-pylith ============================================================================================= TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1905) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ============================================================================================= TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1951) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -ldl Adding ['dl'] to LIBS Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking dynamic linker /PETSc3/petsc/apple/bin/mpicc using flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] Checking for program /PETSc3/petsc/apple/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/PETSc3/petsc/apple/bin/mpicc" Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -ldl Valid C linker flag -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -ldl ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/libconftest.dylib", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -ldl Using dynamic linker /PETSc3/petsc/apple/bin/mpicc with flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] and library extension dylib ============================================================================================= TESTING: checkPragma from config.setCompilers(config/BuildSystem/config/setCompilers.py:1409) Check for all available applicable languages whether they complain (including warnings!) about potentially unknown pragmas Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -Wunknown-pragmas -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wunknown-pragmas Added Cxx compiler flag -Wunknown-pragmas ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -Wunknown-pragmas -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #pragma GCC poison TEST int main() { ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC -Wunknown-pragmas /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wunknown-pragmas Added C compiler flag -Wunknown-pragmas ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC -Wunknown-pragmas /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #pragma GCC poison TEST int main() { ; return 0; } ============================================================================================= TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:2000) Output module data as defines and substitutions Substituting "CC" with "/PETSc3/petsc/apple/bin/mpicc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/PETSc3/petsc/apple/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/PETSc3/petsc/apple/bin/mpicxx" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "/PETSc3/petsc/apple/bin/mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress" child config.setCompilers 15.573360 ============================================================================================= TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.002182 ============================================================================================= TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:82) Get the default compiler flags Executing: /PETSc3/petsc/apple/bin/mpicc --version stdout: Apple clang version 11.0.3 (clang-1103.0.32.59) Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin getCompilerVersion: /PETSc3/petsc/apple/bin/mpicc Apple clang version 11.0.3 (clang-1103.0.32.59) Defined make macro "C_VERSION" to "Apple clang version 11.0.3 (clang-1103.0.32.59)" Executing: /PETSc3/petsc/apple/bin/mpicc -show stdout: /Users/knepley/MacSoftware/bin/ccache gcc -fstack-protector -g3 -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/PETSc3/petsc/apple/include -L/PETSc3/petsc/apple/lib -lmpi -lpmpi Defined make macro "MPICC_SHOW" to "/Users/knepley/MacSoftware/bin/ccache gcc -fstack-protector -g3 -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/PETSc3/petsc/apple/include -L/PETSc3/petsc/apple/lib -lmpi -lpmpi" Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 500 Detected CLANG compiler Executing: /PETSc3/petsc/apple/bin/mpicc --version stdout: Apple clang version 11.0.3 (clang-1103.0.32.59) Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt Detected Darwin/MacOSX Catalina OS Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 500 Detected CLANG compiler Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 500 Detected CLANG compiler Trying C compiler flag -Wall Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC -Wall /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC -Wall -Wwrite-strings /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector Added C compiler flag -fstack-protector Trying C compiler flag -fno-stack-check Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check Added C compiler flag -fno-stack-check Trying C compiler flag -mfp16-format=ieee Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -mfp16-format=ieee /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument: '-mfp16-format=ieee' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -mfp16-format=ieee clang: error: unknown argument: '-mfp16-format=ieee' PETSc Error: No output file produced Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -Qunused-arguments Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments Added C compiler flag -Qunused-arguments Trying C compiler flag -fvisibility=hidden Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden Added C compiler flag -fvisibility=hidden Executing: /PETSc3/petsc/apple/bin/mpicc -show stdout: /Users/knepley/MacSoftware/bin/ccache gcc -fstack-protector -g3 -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/PETSc3/petsc/apple/include -L/PETSc3/petsc/apple/lib -lmpi -lpmpi Defined make macro "MPICC_SHOW" to "/Users/knepley/MacSoftware/bin/ccache gcc -fstack-protector -g3 -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/PETSc3/petsc/apple/include -L/PETSc3/petsc/apple/lib -lmpi -lpmpi" Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 500 Detected CLANG compiler Trying C compiler flag -g3 Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 Added C compiler flag -g3 Trying C compiler flag -O0 Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 Added C compiler flag -O0 Executing: /PETSc3/petsc/apple/bin/mpicxx --version stdout: Apple clang version 11.0.3 (clang-1103.0.32.59) Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin getCompilerVersion: /PETSc3/petsc/apple/bin/mpicxx Apple clang version 11.0.3 (clang-1103.0.32.59) Defined make macro "Cxx_VERSION" to "Apple clang version 11.0.3 (clang-1103.0.32.59)" Executing: /PETSc3/petsc/apple/bin/mpicxx -show stdout: /Users/knepley/MacSoftware/bin/ccache g++ -fstack-protector -g -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/PETSc3/petsc/apple/include -L/PETSc3/petsc/apple/lib -lmpicxx -lmpi -lpmpi Defined make macro "MPICXX_SHOW" to "/Users/knepley/MacSoftware/bin/ccache g++ -fstack-protector -g -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/PETSc3/petsc/apple/include -L/PETSc3/petsc/apple/lib -lmpicxx -lmpi -lpmpi" Executing: /PETSc3/petsc/apple/bin/mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt Executing: /PETSc3/petsc/apple/bin/mpicxx --help | head -n 500 Detected CLANG compiler Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: /PETSc3/petsc/apple/bin/mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt Executing: /PETSc3/petsc/apple/bin/mpicxx --version stdout: Apple clang version 11.0.3 (clang-1103.0.32.59) Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin Detected Darwin/MacOSX Catalina OS Executing: /PETSc3/petsc/apple/bin/mpicxx --help | head -n 500 Detected CLANG compiler Trying Cxx compiler flag -Wall Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -Wall -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -Wall -Wwrite-strings -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fno-stack-check Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check Added Cxx compiler flag -fno-stack-check Trying Cxx compiler flag -fvisibility=hidden Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden Added Cxx compiler flag -fvisibility=hidden Executing: /PETSc3/petsc/apple/bin/mpicxx -show stdout: /Users/knepley/MacSoftware/bin/ccache g++ -fstack-protector -g -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/PETSc3/petsc/apple/include -L/PETSc3/petsc/apple/lib -lmpicxx -lmpi -lpmpi Defined make macro "MPICXX_SHOW" to "/Users/knepley/MacSoftware/bin/ccache g++ -fstack-protector -g -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/PETSc3/petsc/apple/include -L/PETSc3/petsc/apple/lib -lmpicxx -lmpi -lpmpi" Executing: /PETSc3/petsc/apple/bin/mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt Executing: /PETSc3/petsc/apple/bin/mpicxx --help | head -n 500 Detected CLANG compiler Trying Cxx compiler flag -g Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g Added Cxx compiler flag -g Trying Cxx compiler flag -O0 Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 Added Cxx compiler flag -O0 ============================================================================================= TESTING: checkIntelHardwareSupport from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:173) Use Linux/MacOS commands to determine what operations the hardware supports Executing: lscpu Executing: sysctl -a stdout: user.cs_path: /usr/bin:/bin:/usr/sbin:/sbin user.bc_base_max: 99 user.bc_dim_max: 2048 user.bc_scale_max: 99 user.bc_string_max: 1000 user.coll_weights_max: 2 user.expr_nest_max: 32 user.line_max: 2048 user.re_dup_max: 255 user.posix2_version: 200112 user.posix2_c_bind: 0 user.posix2_c_dev: 0 user.posix2_char_term: 0 user.posix2_fort_dev: 0 user.posix2_fort_run: 0 user.posix2_localedef: 0 user.posix2_sw_dev: 0 user.posix2_upe: 0 user.stream_max: 20 user.tzname_max: 255 kern.ostype: Darwin kern.osrelease: 19.6.0 kern.osrevision: 199506 kern.version: Darwin Kernel Version 19.6.0: Thu Jun 18 20:49:00 PDT 2020; root:xnu-6153.141.1~1/RELEASE_X86_64 kern.maxvnodes: 263168 kern.maxproc: 16704 kern.maxfiles: 196608 kern.argmax: 262144 kern.securelevel: 0 kern.hostname: MacBook-Pro.fios-router.home kern.hostid: 0 kern.clockrate: { hz = 100, tick = 10000, tickadj = 0, profhz = 100, stathz = 100 } kern.posix1version: 200112 kern.ngroups: 16 kern.job_control: 1 kern.saved_ids: 1 kern.boottime: { sec = 1632909951, usec = 498170 } Wed Sep 29 06:05:51 2021 kern.nisdomainname: kern.maxfilesperproc: 98304 kern.maxprocperuid: 11136 kern.ipc.maxsockbuf: 8388608 kern.ipc.sockbuf_waste_factor: 8 kern.ipc.somaxconn: 128 kern.ipc.nmbclusters: 65536 kern.ipc.soqlimitcompat: 1 kern.ipc.mleak_sample_factor: 500 kern.ipc.mb_normalized: 0 kern.ipc.mb_watchdog: 0 kern.ipc.mb_drain_force: 0 kern.ipc.mb_drain_maxint: 0 kern.ipc.socket_debug: 0 kern.ipc.sodefunct_calls: 0 kern.ipc.sosendminchain: 16384 kern.ipc.sorecvmincopy: 16384 kern.ipc.sosendjcl: 1 kern.ipc.sosendjcl_ignore_capab: 0 kern.ipc.sosendbigcl_ignore_capab: 0 kern.ipc.sodefunctlog: 0 kern.ipc.sothrottlelog: 0 kern.ipc.sorestrictrecv: 1 kern.ipc.sorestrictsend: 1 kern.ipc.soreserveheadroom: 1 kern.ipc.maxextbkidleperproc: 1 kern.ipc.extbkidletime: 600 kern.ipc.extbkidlercvhiwat: 131072 kern.ipc.sotcdb: 0 kern.ipc.throttle_best_effort: 0 kern.ipc.njcl: 21840 kern.ipc.njclbytes: 16384 kern.ipc.soqlencomp: 0 kern.ipc.sbmb_cnt: 165 kern.ipc.sbmb_cnt_peak: 42052 kern.ipc.sbmb_cnt_floor: 165 kern.ipc.sbmb_limreached: 0 kern.ipc.io_policy.log: 0 kern.ipc.io_policy.uuid: 1 kern.ipc.maxsendmsgx: 100 kern.ipc.maxrecvmsgx: 100 kern.usrstack: -488783872 kern.netboot: 0 kern.sysv.shmmax: 4194304 kern.sysv.shmmin: 1 kern.sysv.shmmni: 32 kern.sysv.shmseg: 8 kern.sysv.shmall: 1024 kern.sysv.semmni: 87381 kern.sysv.semmns: 87381 kern.sysv.semmnu: 87381 kern.sysv.semmsl: 87381 kern.sysv.semume: 10 kern.aiomax: 90 kern.aioprocmax: 16 kern.aiothreads: 4 kern.corefile: /cores/core.%P kern.coredump: 1 kern.sugid_coredump: 0 kern.delayterm: 0 kern.shreg_private: 0 kern.posix.sem.max: 10000 kern.usrstack64: 140732704604160 kern.tfp.policy: 2 kern.procname: sysctl kern.speculative_reads_disabled: 0 kern.osversion: 19G2021 kern.safeboot: 0 kern.rage_vnode: 0 kern.tty.ptmx_max: 511 kern.check_openevt: 0 kern.threadname: kern.dtrace.err_verbose: 0 kern.dtrace.buffer_memory_maxsize: 22906492245 kern.dtrace.buffer_memory_inuse: 0 kern.dtrace.difo_maxsize: 262144 kern.dtrace.dof_maxsize: 524288 kern.dtrace.global_maxsize: 16384 kern.dtrace.provide_private_probes: 1 kern.dtrace.dof_mode: 1 kern.dtrace.ignore_fbt_blacklist: 0 kern.nbuf: 16384 kern.maxnbuf: 16384 kern.monotonic.supported: 1 kern.monotonic.pmis: 276929 0 kern.monotonic.retrograde_updates: 276929 0 kern.monotonic.task_thread_counting: 1 kern.flush_cache_on_write: 0 kern.wq_stalled_window_usecs: 200 kern.wq_reduce_pool_window_usecs: 5000000 kern.wq_max_timer_interval_usecs: 50000 kern.wq_max_threads: 512 kern.wq_max_constrained_threads: 80 kern.kdbg.experimental_continuous: 0 kern.kdbg.debug: 0 kern.kdbg.oldest_time: 0 kern.ds_supgroups_supported: 1 kern.sugid_scripts: 0 kern.zleak.active: 0 kern.zleak.max_zonemap_size: 25769803776 kern.zleak.global_threshold: 12884901888 kern.zleak.zone_threshold: 1610612736 kern.uuid: 1D3A0F3D-D908-397B-BD16-8F48C0823A2E kern.osproductversion: 10.15.6 kern.iossupportversion: 13.6 kern.bootargs: chunklist-security-epoch=0 -chunklist-no-rev2-dev kern.kernelcacheuuid: F2999973-4197-BF67-18AC-FA1EF1822216 kern.num_files: 7543 kern.num_vnodes: 263168 kern.num_tasks: 16384 kern.num_threads: 81920 kern.num_taskthreads: 16384 kern.num_recycledvnodes: 1579268602 kern.namecache_disabled: 0 kern.sched_enable_smt: 1 kern.sched_allow_NO_SMT_threads: 1 kern.preheat_max_bytes: 1048576 kern.preheat_min_bytes: 32768 kern.speculative_prefetch_max: 201326592 kern.speculative_prefetch_max_iosize: 524288 kern.vm_page_free_target: 4000 kern.vm_page_free_min: 3500 kern.vm_page_free_reserved: 784 kern.vm_page_speculative_percentage: 5 kern.vm_page_speculative_q_age_ms: 500 kern.vm_max_delayed_work_limit: 32 kern.vm_max_batch: 256 kern.bootsessionuuid: A0C4740A-3C46-40B6-A22C-E4E8DB76FF0F kern.timer.coalescing_enabled: 1 kern.timer.deadline_tracking_bin_1: 2000000 kern.timer.deadline_tracking_bin_2: 5000000 kern.timer.longterm.threshold: 1000 kern.timer.longterm.scan_limit: 100000 kern.timer.longterm.scan_interval: 100000 kern.timer.longterm.qlen: 527 kern.timer.longterm.scan_pauses: 1493554 kern.vfsnspace: 0 kern.singleuser: 0 kern.minimalboot: 0 kern.affinity_sets_enabled: 1 kern.affinity_sets_mapping: 1 kern.slide: 1 kern.ipc_voucher_trace_contents: 0 kern.stack_size: 16384 kern.stack_depth_max: 11336 kern.kern_feature_overrides: 0 kern.ipc_portbt: 0 kern.sched: dualq kern.timer_coalesce_bg_scale: -5 kern.timer_resort_threshold_ns: 50000000 kern.timer_coalesce_bg_ns_max: 100000000 kern.timer_coalesce_kt_scale: 3 kern.timer_coalesce_kt_ns_max: 1000000 kern.timer_coalesce_fp_scale: 3 kern.timer_coalesce_fp_ns_max: 1000000 kern.timer_coalesce_ts_scale: 3 kern.timer_coalesce_ts_ns_max: 1000000 kern.timer_coalesce_tier0_scale: 3 kern.timer_coalesce_tier0_ns_max: 1000000 kern.timer_coalesce_tier1_scale: 2 kern.timer_coalesce_tier1_ns_max: 5000000 kern.timer_coalesce_tier2_scale: 1 kern.timer_coalesce_tier2_ns_max: 20000000 kern.timer_coalesce_tier3_scale: -2 kern.timer_coalesce_tier3_ns_max: 75000000 kern.timer_coalesce_tier4_scale: -15 kern.timer_coalesce_tier4_ns_max: 10000000000 kern.timer_coalesce_tier5_scale: -15 kern.timer_coalesce_tier5_ns_max: 10000000000 kern.hv_support: 1 kern.thread_groups_supported: 0 kern.memorystatus_sysprocs_idle_delay_time: 10 kern.memorystatus_apps_idle_delay_time: 10 kern.jetsam_aging_policy: 2 kern.memorystatus_purge_on_warning: 2 kern.memorystatus_purge_on_urgent: 5 kern.memorystatus_purge_on_critical: 8 kern.bridge.bootsessionuuid: 04D7AA88-6A3F-4F6D-A19F-F3C028961864 kern.msgbuf: 16384 kern.task_exc_guard_default: 0 kern.ulock_adaptive_spin_usecs: 20 kern.eventhandler.debug: 0 kern.secure_kernel: 0 kern.skywalk.ring_stat_enable: 0 kern.skywalk.flowswitch.ip_reass: 1 kern.skywalk.flowswitch.ipfm_frag_ttl: 60 kern.skywalk.flowswitch.ipfm_timeout_tcall_ival: 1 kern.skywalk.flowswitch.flow_route_expire: 600 kern.skywalk.flowswitch.en0.ipfm.frag_limit: 576 kern.skywalk.flowswitch.en0.ipfm.frag_count: 0 kern.skywalk.flowswitch.en0.ipfm.queue_limit: 288 kern.skywalk.flowswitch.en0.ipfm.queue_count: 0 kern.skywalk.flowswitch.en1.ipfm.frag_limit: 1216 kern.skywalk.flowswitch.en1.ipfm.frag_count: 0 kern.skywalk.flowswitch.en1.ipfm.queue_limit: 608 kern.skywalk.flowswitch.en1.ipfm.queue_count: 0 kern.skywalk.flowswitch.en2.ipfm.frag_limit: 1216 kern.skywalk.flowswitch.en2.ipfm.frag_count: 0 kern.skywalk.flowswitch.en2.ipfm.queue_limit: 608 kern.skywalk.flowswitch.en2.ipfm.queue_count: 0 kern.skywalk.flowswitch.en3.ipfm.frag_limit: 1216 kern.skywalk.flowswitch.en3.ipfm.frag_count: 0 kern.skywalk.flowswitch.en3.ipfm.queue_limit: 608 kern.skywalk.flowswitch.en3.ipfm.queue_count: 0 kern.skywalk.flowswitch.en4.ipfm.frag_limit: 1216 kern.skywalk.flowswitch.en4.ipfm.frag_count: 0 kern.skywalk.flowswitch.en4.ipfm.queue_limit: 608 kern.skywalk.flowswitch.en4.ipfm.queue_count: 0 kern.skywalk.flowswitch.awdl0.ipfm.frag_limit: 576 kern.skywalk.flowswitch.awdl0.ipfm.frag_count: 0 kern.skywalk.flowswitch.awdl0.ipfm.queue_limit: 288 kern.skywalk.flowswitch.awdl0.ipfm.queue_count: 0 kern.skywalk.netif.default_drop: 0 kern.interrupt_timer_coalescing_enabled: 1 kern.timer_coalesce_idle_entry_hard_deadline_max: 5000000 kern.pmtimeout: 0 kern.wake_abs_time: 1564501934809221 kern.sleep_abs_time: 1564501103796936 kern.useractive_abs_time: 1564501974336881 kern.userinactive_abs_time: 1564448562792833 kern.sleeptime: { sec = 1637670902, usec = 286239 } Tue Nov 23 07:35:02 2021 kern.waketime: { sec = 1637671767, usec = 601205 } Tue Nov 23 07:49:27 2021 kern.willshutdown: 0 kern.iokittest: 0 kern.progressmeterenable: 0 kern.progressmeter: 742 kern.wakereason: EC.KeyboardTouchpad kern.consoleoptions: 0 kern.aotmode: 0 kern.aotmodebits: 0 kern.hibernatefile: /var/vm/sleepimage kern.bootsignature: kern.hibernatemode: 0 kern.hibernategraphicsready: 0 kern.hibernatewakenotification: 0 kern.hibernatelockscreenready: 0 kern.hibernatehidready: 0 kern.monotonicclock: 0 kern.monotonicclock_usecs: 54296914512329 1579120478587196 kern.monotonicclock_rate_usecs: 30 kern.monotoniclock_offset_usecs: 1583389471738403 kern.pthread_mutex_default_policy: 0 kern.hv.vmx_mitigations: 22 kern.hv.vmx_supported_mitigations: 30 vm.loadavg: { 3.63 2.51 2.26 } vm.swapusage: total = 4096.00M used = 2823.25M free = 1272.75M (encrypted) vm.cs_force_kill: 0 vm.cs_force_hard: 0 vm.cs_debug: 0 vm.cs_debug_fail_on_unsigned_code: 0 vm.cs_debug_unsigned_exec_failures: 0 vm.cs_debug_unsigned_mmap_failures: 0 vm.cs_all_vnodes: 0 vm.cs_system_enforcement: 1 vm.cs_process_enforcement: 0 vm.cs_enforcement_panic: 0 vm.cs_library_validation: 0 vm.global_user_wire_limit: 56349970923 vm.user_wire_limit: 56349970923 vm.global_no_user_wire_amount: 12369505813 vm.vm_copy_src_not_internal: 0 vm.vm_copy_src_not_symmetric: 136 vm.vm_copy_src_large: 0 vm.vm_page_external_count: 952223 vm.vm_page_filecache_min: 5219942 vm.vm_page_xpmapped_min: 295021 vm.compressor_input_bytes: 1038161494016 vm.compressor_compressed_bytes: 64423225708 vm.compressor_bytes_used: 3749671052 vm.compressor_mode: 4 vm.compressor_is_active: 1 vm.compressor_swapout_target_age: 0 vm.compressor_available: 1 vm.compressor_min_csegs_per_major_compaction: 30 vm.vm_ripe_target_age_in_secs: 172800 vm.compressor_eval_period_in_msecs: 250 vm.compressor_sample_min_in_msecs: 500 vm.compressor_sample_max_in_msecs: 10000 vm.compressor_thrashing_threshold_per_10msecs: 50 vm.compressor_thrashing_min_per_10msecs: 20 vm.swapfileprefix: /private/var/vm/swapfile vm.compressor_timing_enabled: 0 vm.lz4_compressions: 0 vm.lz4_compression_failures: 0 vm.lz4_compressed_bytes: 0 vm.lz4_wk_compression_delta: 0 vm.lz4_wk_compression_negative_delta: 0 vm.lz4_decompressions: 0 vm.lz4_decompressed_bytes: 0 vm.uc_decompressions: 0 vm.wk_compressions: 0 vm.wk_catime: 0 vm.wkh_catime: 0 vm.wkh_compressions: 0 vm.wks_catime: 0 vm.wks_compressions: 0 vm.wk_compressions_exclusive: 0 vm.wk_sv_compressions: 0 vm.wk_mzv_compressions: 0 vm.wk_compression_failures: 0 vm.wk_compressed_bytes_exclusive: 0 vm.wk_compressed_bytes_total: 0 vm.wks_compressed_bytes: 0 vm.wks_compression_failures: 0 vm.wks_sv_compressions: 0 vm.wk_decompressions: 0 vm.wk_datime: 0 vm.wkh_datime: 0 vm.wkh_decompressions: 0 vm.wks_datime: 0 vm.wks_decompressions: 0 vm.wk_decompressed_bytes: 0 vm.wk_sv_decompressions: 0 vm.lz4_threshold: 2048 vm.wkdm_reeval_threshold: 1536 vm.lz4_max_failure_skips: 0 vm.lz4_max_failure_run_length: -1 vm.lz4_max_preselects: 0 vm.lz4_run_preselection_threshold: -1 vm.lz4_run_continue_bytes: 0 vm.lz4_profitable_bytes: 0 vm.vm_page_background_mode: 1 vm.vm_page_background_exclude_external: 0 vm.vm_page_background_target: 50000 vm.vm_page_background_count: 363208 vm.vm_page_background_internal_count: 340735 vm.vm_page_background_external_count: 22473 vm.vm_page_background_promoted_count: 32190144 vm.vm_pageout_considered_bq_internal: 4334161 vm.vm_pageout_considered_bq_external: 401682 vm.vm_pageout_rejected_bq_internal: 0 vm.vm_pageout_rejected_bq_external: 0 vm.darkwake_mode: 0 vm.cs_blob_count: 715 vm.cs_blob_size: 40242624 vm.cs_blob_count_peak: 1367 vm.cs_blob_size_peak: 63961712 vm.cs_blob_size_max: 16318464 vm.vm_do_collapse_compressor: 581 vm.vm_do_collapse_compressor_pages: 6241 vm.vm_do_collapse_terminate: 581 vm.vm_do_collapse_terminate_failure: 0 vm.vm_should_cow_but_wired: 0 vm.vm_create_upl_extra_cow: 96 vm.vm_create_upl_extra_cow_pages: 276 vm.vm_create_upl_lookup_failure_write: 0 vm.vm_create_upl_lookup_failure_copy: 0 vm.vm_debug_events: 0 vm.shared_region_unnest_logging: 1 vm.enforce_shared_cache_dir: 1 vm.shared_region_trace_level: 1 vm.shared_region_version: 3 vm.shared_region_persistence: 0 vm.pagesize: 4096 vm.vm_page_free_target: 4000 vm.memory_pressure: 0 vm.page_free_wanted: 0 vm.page_purgeable_count: 54086 vm.page_purgeable_wired_count: 345 vm.kern_lpage_count: 476 vm.madvise_free_debug: 0 vm.page_reusable_count: 4580938 vm.reusable_success: 180407589 vm.reusable_failure: 681744 vm.reusable_pages_shared: 2016478 vm.all_reusable_calls: 0 vm.partial_reusable_calls: 189288704 vm.reuse_success: 21271209 vm.reuse_failure: 0 vm.all_reuse_calls: 0 vm.partial_reuse_calls: 18137116 vm.can_reuse_success: 237635 vm.can_reuse_failure: 836 vm.reusable_reclaimed: 0 vm.reusable_nonwritable: 74583 vm.reusable_shared: 55984659 vm.free_shared: 0 vm.page_free_count: 1522055 vm.page_speculative_count: 475997 vm.page_cleaned_count: 0 vm.page_pageable_internal_count: 11926851 vm.page_pageable_external_count: 952223 vm.pageout_inactive_clean: 20150542 vm.pageout_inactive_used: 14216672 vm.pageout_inactive_dirty_internal: 229617272 vm.pageout_inactive_dirty_external: 27369 vm.pageout_speculative_clean: 9812585 vm.pageout_freed_external: 862768 vm.pageout_freed_speculative: 9812585 vm.pageout_freed_cleaned: 86294 vm.prefault_nb_pages: 0 vm.prefault_nb_bailout: 0 vm.vm_clump_promote_threshold: 4 vm.vm_min_kernel_address: 18446743521806254080 vm.vm_max_kernel_address: 18446744073709547519 vm.pages: 16437965 vm.page_busy_absent_skipped: 0 vm.upl_pages_tainted: 0 vm.iopl_pages_tainted: 0 vm.corpse_footprint_count: 86 vm.corpse_footprint_size_avg: 166935 vm.corpse_footprint_size_max: 1243396 vm.corpse_footprint_full: 0 vm.corpse_footprint_no_buf: 0 vm.shared_region_pager_copied: 0 vm.shared_region_pager_slid: 152043 vm.shared_region_pager_slid_error: 0 vm.shared_region_pager_reclaimed: 18306 vm.protect_privileged_from_untrusted: 1 vm.copied_on_read: 1 vfs.generic.maxtypenum: 29 vfs.generic.nfs.client.initialdowndelay: 5 vfs.generic.nfs.client.nextdowndelay: 30 vfs.generic.nfs.client.iosize: 1048576 vfs.generic.nfs.client.access_cache_timeout: 60 vfs.generic.nfs.client.allow_async: 0 vfs.generic.nfs.client.statfs_rate_limit: 10 vfs.generic.nfs.client.nfsiod_thread_max: 16 vfs.generic.nfs.client.nfsiod_thread_count: 0 vfs.generic.nfs.client.lockd_mounts: 0 vfs.generic.nfs.client.max_async_writes: 128 vfs.generic.nfs.client.access_delete: 1 vfs.generic.nfs.client.access_dotzfs: 1 vfs.generic.nfs.client.access_for_getattr: 0 vfs.generic.nfs.client.idmap_ctrl: 1 vfs.generic.nfs.client.callback_port: 0 vfs.generic.nfs.client.is_mobile: 1 vfs.generic.nfs.client.squishy_flags: 11 vfs.generic.nfs.client.debug_ctl: 0 vfs.generic.nfs.client.readlink_nocache: 0 vfs.generic.nfs.client.root_steals_gss_context: 0 vfs.generic.nfs.client.default_nfs4domain: vfs.generic.nfs.server.wg_delay: 1000 vfs.generic.nfs.server.wg_delay_v3: 0 vfs.generic.nfs.server.require_resv_port: 0 vfs.generic.nfs.server.async: 0 vfs.generic.nfs.server.export_hash_size: 64 vfs.generic.nfs.server.reqcache_size: 64 vfs.generic.nfs.server.request_queue_length: 128 vfs.generic.nfs.server.user_stats: 1 vfs.generic.nfs.server.gss_context_ttl: 28800 vfs.generic.nfs.server.fsevents: 1 vfs.generic.nfs.server.nfsd_thread_max: 0 vfs.generic.nfs.server.nfsd_thread_count: 0 vfs.generic.nfs.server.nfsd_sock_idle_timeout: 3600 vfs.generic.nfs.server.nfsd_tcp_connections: 0 vfs.generic.nfs.server.use_upcall_svc: 1 vfs.generic.nfs.server.upcall_queue_limit: 0 vfs.generic.nfs.server.upcall_queue_max_seen: 0 vfs.generic.nfs.server.upcall_queue_count: 0 vfs.generic.sync_timeout: 5 vfs.generic.root_unmounted_cleanly: 1 vfs.generic.hfs.kdebug.allocation: 0 vfs.generic.hfs.jnl.trim_flush: 240 vfs.generic.hfs.jnl.kdebug.trim: 0 vfs.generic.hfs.allocated: 0 vfs.generic.always_do_fullfsync: 0 vfs.generic.apfs.fusion_rc_promotion_size_limit_mb: 4096 vfs.generic.apfs.fusion_rc_flags: 0 vfs.generic.apfs.fusion_w2rc_filled_ratio_threshold: 50 vfs.generic.apfs.fusion_lc_rc_promotion_threshold_mult: 8 vfs.generic.apfs.fusion_rc_promotion_threshold_mult: 4 vfs.generic.apfs.fusion_wbc_buffersize: 16777216 vfs.generic.apfs.fusion_verbosity_flags: 0 vfs.generic.apfs.fusion_paranoia_level: 0 vfs.generic.apfs.fusion_swapfile_backoff: 4 vfs.generic.apfs.fusion_slow_io_threshold: 10240 vfs.generic.apfs.fusion_elevator_throttle: 100 vfs.generic.apfs.fusion_promoter_throttle: 100 vfs.generic.apfs.fusion_promoter_queue_limit: 1000 vfs.generic.apfs.fusion_wbc_elevator_wmk: 0 vfs.generic.apfs.fusion_wbc_backoff_wmk_reenable: 25 vfs.generic.apfs.fusion_wbc_backoff_wmk_med: 95 vfs.generic.apfs.fusion_wbc_backoff_wmk_low: 60 vfs.generic.apfs.allocated: 300156221 vfs.generic.autofs.vnode_recycle_on_inactive: 1 vfs.nummntops: 121 vfs.nspace.resolver: 0 vfs.nspace.prevent_materialization: 0 vfs.nspace.thread_prevent_materialization: 0 net.local.stream.sendspace: 8192 net.local.stream.recvspace: 8192 net.local.stream.tracemdns: 0 net.local.dgram.maxdgram: 2048 net.local.dgram.recvspace: 4096 net.local.inflight: 0 net.inet.ip.portrange.lowfirst: 1023 net.inet.ip.portrange.lowlast: 600 net.inet.ip.portrange.first: 49152 net.inet.ip.portrange.last: 65535 net.inet.ip.portrange.hifirst: 49152 net.inet.ip.portrange.hilast: 65535 net.inet.ip.forwarding: 0 net.inet.ip.redirect: 1 net.inet.ip.ttl: 64 net.inet.ip.rtexpire: 10 net.inet.ip.rtminexpire: 10 net.inet.ip.rtmaxcache: 128 net.inet.ip.sourceroute: 0 net.inet.ip.accept_sourceroute: 0 net.inet.ip.gifttl: 30 net.inet.ip.subnets_are_local: 0 net.inet.ip.mcast.maxgrpsrc: 512 net.inet.ip.mcast.maxsocksrc: 128 net.inet.ip.mcast.loop: 1 net.inet.ip.dummynet.hash_size: 64 net.inet.ip.dummynet.curr_time: 0 net.inet.ip.dummynet.ready_heap: 0 net.inet.ip.dummynet.extract_heap: 0 net.inet.ip.dummynet.searches: 0 net.inet.ip.dummynet.search_steps: 0 net.inet.ip.dummynet.expire: 1 net.inet.ip.dummynet.max_chain_len: 16 net.inet.ip.dummynet.red_lookup_depth: 256 net.inet.ip.dummynet.red_avg_pkt_size: 512 net.inet.ip.dummynet.red_max_pkt_size: 1500 net.inet.ip.dummynet.debug: 0 net.inet.ip.random_id_statistics: 0 net.inet.ip.random_id_collisions: 0 net.inet.ip.random_id_total: 0 net.inet.ip.sendsourcequench: 0 net.inet.ip.maxfragpackets: 2048 net.inet.ip.fragpackets: 0 net.inet.ip.maxfragsperpacket: 128 net.inet.ip.adj_clear_hwcksum: 0 net.inet.ip.adj_partial_sum: 1 net.inet.ip.check_interface: 1 net.inet.ip.checkinterface_debug: 0 net.inet.ip.rx_chaining: 1 net.inet.ip.rx_chainsz: 6 net.inet.ip.linklocal.in.allowbadttl: 1 net.inet.ip.random_id: 1 net.inet.ip.maxchainsent: 49 net.inet.ip.select_srcif_debug: 0 net.inet.ip.output_perf: 0 net.inet.ip.output_perf_bins: 0 net.inet.ip.rfc6864: 1 net.inet.icmp.maskrepl: 0 net.inet.icmp.icmplim: 250 net.inet.icmp.timestamp: 0 net.inet.icmp.drop_redirect: 1 net.inet.icmp.log_redirect: 0 net.inet.icmp.bmcastecho: 1 net.inet.igmp.recvifkludge: 1 net.inet.igmp.sendra: 1 net.inet.igmp.sendlocal: 1 net.inet.igmp.v1enable: 1 net.inet.igmp.v2enable: 1 net.inet.igmp.legacysupp: 0 net.inet.igmp.default_version: 3 net.inet.igmp.gsrdelay: 10 net.inet.igmp.debug: 0 net.inet.tcp.rfc1644: 0 net.inet.tcp.mssdflt: 512 net.inet.tcp.keepidle: 7200000 net.inet.tcp.keepintvl: 75000 net.inet.tcp.sendspace: 131072 net.inet.tcp.recvspace: 131072 net.inet.tcp.keepinit: 75000 net.inet.tcp.v6mssdflt: 1024 net.inet.tcp.backoff_maximum: 65536 net.inet.tcp.ecn_timeout: 60 net.inet.tcp.disable_tcp_heuristics: 0 net.inet.tcp.clear_tfocache: 0 net.inet.tcp.log_in_vain: 0 net.inet.tcp.blackhole: 0 net.inet.tcp.delayed_ack: 3 net.inet.tcp.tcp_lq_overflow: 1 net.inet.tcp.recvbg: 0 net.inet.tcp.drop_synfin: 1 net.inet.tcp.reass.overflows: 0 net.inet.tcp.slowlink_wsize: 8192 net.inet.tcp.maxseg_unacked: 8 net.inet.tcp.rfc3465: 1 net.inet.tcp.rfc3465_lim2: 1 net.inet.tcp.recv_allowed_iaj: 5 net.inet.tcp.doautorcvbuf: 1 net.inet.tcp.autotunereorder: 1 net.inet.tcp.autorcvbufmax: 2097152 net.inet.tcp.lro: 0 net.inet.tcp.lrodbg: 0 net.inet.tcp.lro_startcnt: 4 net.inet.tcp.disable_access_to_stats: 1 net.inet.tcp.challengeack_limit: 10 net.inet.tcp.do_rfc5961: 1 net.inet.tcp.rcvsspktcnt: 512 net.inet.tcp.rexmt_thresh: 3 net.inet.tcp.path_mtu_discovery: 1 net.inet.tcp.slowstart_flightsize: 1 net.inet.tcp.local_slowstart_flightsize: 8 net.inet.tcp.tso: 1 net.inet.tcp.ecn_setup_percentage: 100 net.inet.tcp.ecn_initiate_out: 2 net.inet.tcp.ecn_negotiate_in: 2 net.inet.tcp.packetchain: 50 net.inet.tcp.socket_unlocked_on_output: 1 net.inet.tcp.rfc3390: 1 net.inet.tcp.min_iaj_win: 16 net.inet.tcp.acc_iaj_react_limit: 200 net.inet.tcp.doautosndbuf: 1 net.inet.tcp.autosndbufinc: 8192 net.inet.tcp.autosndbufmax: 2097152 net.inet.tcp.ack_prioritize: 1 net.inet.tcp.rtt_recvbg: 1 net.inet.tcp.recv_throttle_minwin: 16384 net.inet.tcp.enable_tlp: 1 net.inet.tcp.sack: 1 net.inet.tcp.sack_maxholes: 128 net.inet.tcp.sack_globalmaxholes: 65536 net.inet.tcp.sack_globalholes: 0 net.inet.tcp.fastopen_backlog: 10 net.inet.tcp.fastopen: 3 net.inet.tcp.now_init: 531163117 net.inet.tcp.microuptime_init: 904642 net.inet.tcp.minmss: 216 net.inet.tcp.do_tcpdrain: 0 net.inet.tcp.pcbcount: 91 net.inet.tcp.tw_pcbcount: 0 net.inet.tcp.icmp_may_rst: 1 net.inet.tcp.rtt_min: 100 net.inet.tcp.rexmt_slop: 200 net.inet.tcp.randomize_ports: 0 net.inet.tcp.win_scale_factor: 3 net.inet.tcp.init_rtt_from_cache: 1 net.inet.tcp.tcbhashsize: 4096 net.inet.tcp.keepcnt: 8 net.inet.tcp.msl: 15000 net.inet.tcp.max_persist_timeout: 0 net.inet.tcp.always_keepalive: 0 net.inet.tcp.timer_fastmode_idlemax: 10 net.inet.tcp.broken_peer_syn_rexmit_thres: 10 net.inet.tcp.tcp_timer_advanced: 2403 net.inet.tcp.tcp_resched_timerlist: 1931727 net.inet.tcp.pmtud_blackhole_detection: 1 net.inet.tcp.pmtud_blackhole_mss: 1200 net.inet.tcp.cc_debug: 0 net.inet.tcp.newreno_sockets: 0 net.inet.tcp.background_sockets: 0 net.inet.tcp.cubic_sockets: 89 net.inet.tcp.use_newreno: 0 net.inet.tcp.cubic_tcp_friendliness: 0 net.inet.tcp.cubic_fast_convergence: 0 net.inet.tcp.cubic_use_minrtt: 0 net.inet.tcp.lro_sz: 8 net.inet.tcp.lro_time: 10 net.inet.tcp.bg_target_qdelay: 100 net.inet.tcp.bg_allowed_increase: 8 net.inet.tcp.bg_tether_shift: 1 net.inet.tcp.bg_ss_fltsz: 2 net.inet.tcp.log.level_info: 0 net.inet.tcp.log.enable: 0 net.inet.tcp.log.enable_usage: connection:0x1 rtt:0x2 ka:0x4 loop:0x10 local:0x20 gw:0x40 syn:0x100 fin:0x200 rst:0x400 dropnecp:0x1000 droppcb:0x2000 droppkt:0x4000 net.inet.tcp.log.rtt_port: 0 net.inet.tcp.log.thflags_if_family: 0 net.inet.tcp.log.privacy: 1 net.inet.tcp.log.rate_limit: 600 net.inet.tcp.log.rate_duration: 60 net.inet.tcp.log.rate_max: 0 net.inet.tcp.log.rate_exceeded_total: 0 net.inet.tcp.log.rate_current: 0 net.inet.udp.checksum: 1 net.inet.udp.maxdgram: 9216 net.inet.udp.recvspace: 786896 net.inet.udp.log_in_vain: 0 net.inet.udp.blackhole: 0 net.inet.udp.pcbcount: 91 net.inet.udp.randomize_ports: 1 net.inet.ipsec.def_policy: 1 net.inet.ipsec.esp_trans_deflev: 1 net.inet.ipsec.esp_net_deflev: 1 net.inet.ipsec.ah_trans_deflev: 1 net.inet.ipsec.ah_net_deflev: 1 net.inet.ipsec.ah_cleartos: 1 net.inet.ipsec.ah_offsetmask: 0 net.inet.ipsec.dfbit: 0 net.inet.ipsec.ecn: 0 net.inet.ipsec.debug: 0 net.inet.ipsec.esp_randpad: -1 net.inet.ipsec.bypass: 1 net.inet.ipsec.esp_port: 0 net.inet.log_restricted: 0 net.inet.raw.maxdgram: 8192 net.inet.raw.recvspace: 8192 net.inet.raw.pcbcount: 1 net.inet.mptcp.enable: 1 net.inet.mptcp.mptcp_cap_retr: 4 net.inet.mptcp.dss_csum: 0 net.inet.mptcp.fail: 1 net.inet.mptcp.keepalive: 840 net.inet.mptcp.rtthist_thresh: 600 net.inet.mptcp.userto: 1 net.inet.mptcp.rto_thresh: 1500 net.inet.mptcp.probeto: 1000 net.inet.mptcp.probecnt: 5 net.inet.mptcp.dbg_area: 31 net.inet.mptcp.dbg_level: 1 net.inet.mptcp.pcbcount: 0 net.inet.mptcp.alternate_port: 0 net.inet.mptcp.allow_aggregate: 0 net.inet.mptcp.expected_progress_headstart: 5000 net.inet.mptcp.rto: 3 net.inet.mptcp.nrto: 3 net.inet.mptcp.tw: 60 net.link.generic.system.ifcount: 21 net.link.generic.system.if_verbose: 0 net.link.generic.system.dlil_verbose: 0 net.link.generic.system.sndq_maxlen: 128 net.link.generic.system.rcvq_maxlen: 256 net.link.generic.system.rxpoll_decay: 2 net.link.generic.system.rxpoll_freeze_time: 1000000000 net.link.generic.system.rxpoll_sample_time: 10000000 net.link.generic.system.rxpoll_interval_time: 1000000 net.link.generic.system.rxpoll_interval_pkts: 0 net.link.generic.system.rxpoll_wakeups_lowat: 10 net.link.generic.system.rxpoll_wakeups_hiwat: 100 net.link.generic.system.rxpoll_max: 0 net.link.generic.system.rxpoll: 1 net.link.generic.system.dlil_input_threads: 20 net.link.generic.system.dlil_input_sanity_check: 0 net.link.generic.system.flow_advisory: 1 net.link.generic.system.delaybased_queue: 1 net.link.generic.system.hwcksum_in_invalidated: 0 net.link.generic.system.hwcksum_dbg: 0 net.link.generic.system.start_delayed: 0 net.link.generic.system.start_delay_disabled: 0 net.link.generic.system.hwcksum_dbg_mode: 0 net.link.generic.system.hwcksum_dbg_partial_forced: 0 net.link.generic.system.hwcksum_dbg_partial_forced_bytes: 0 net.link.generic.system.hwcksum_dbg_partial_rxoff_forced: 0 net.link.generic.system.hwcksum_dbg_partial_rxoff_adj: 0 net.link.generic.system.hwcksum_dbg_verified: 0 net.link.generic.system.hwcksum_dbg_bad_cksum: 0 net.link.generic.system.hwcksum_dbg_bad_rxoff: 0 net.link.generic.system.hwcksum_dbg_adjusted: 0 net.link.generic.system.hwcksum_dbg_finalized_hdr: 0 net.link.generic.system.hwcksum_dbg_finalized_data: 0 net.link.generic.system.hwcksum_tx: 1 net.link.generic.system.hwcksum_rx: 1 net.link.generic.system.tx_chain_len_count: 0 net.link.generic.system.threshold_notify: 1 net.link.generic.system.threshold_interval: 2 net.link.generic.system.enable_netagent: 0 net.link.generic.system.port_used.entry_count: 23 net.link.generic.system.port_used.entry_gen: 365 net.link.generic.system.port_used.verbose: 0 net.link.generic.system.port_used.wakeuuid_not_set_count: 0 net.link.generic.system.port_used.wakeuuid_not_set_last_time: { sec = 0, usec = 0 } Wed Dec 31 19:00:00 1969 net.link.generic.system.port_used.wakeuuid_not_set_last_if: net.link.ether.inet.prune_intvl: 300 net.link.ether.inet.probe_intvl: 7 net.link.ether.inet.max_age: 1200 net.link.ether.inet.host_down_time: 20 net.link.ether.inet.arp_llreach_base: 120 net.link.ether.inet.arp_unicast_lim: 3 net.link.ether.inet.maxtries: 5 net.link.ether.inet.maxhold: 16 net.link.ether.inet.useloopback: 1 net.link.ether.inet.proxyall: 0 net.link.ether.inet.sendllconflict: 0 net.link.ether.inet.log_arp_warnings: 0 net.link.ether.inet.keep_announcements: 1 net.link.ether.inet.send_conflicting_probes: 1 net.link.ether.inet.verbose: 0 net.link.ether.inet.maxhold_total: 1024 net.link.bridge.inherit_mac: 0 net.link.bridge.rtable_prune_period: 300 net.link.bridge.rtable_hash_size_max: 2048 net.link.bridge.txstart: 0 net.link.bridge.debug: 0 net.link.loopback.max_dequeue: 256 net.link.loopback.sched_model: 0 net.link.loopback.dequeue_sc: 0 net.link.fake.txstart: 1 net.link.fake.hwcsum: 0 net.link.fake.nxattach: 0 net.link.fake.bsd_mode: 1 net.link.fake.debug: 0 net.link.fake.wmm_mode: 0 net.link.fake.multibuflet: 0 net.link.fake.copypkt_mode: 0 net.link.fake.tx_headroom: 0 net.link.fake.max_mtu: 2048 net.link.fake.buflet_size: 512 net.link.fake.user_access: 0 net.link.fake.if_adv_intvl: 0 net.link.fake.tx_drops: 0 net.link.bond.debug: 0 net.link.iptap.total_tap_count: 0 net.link.iptap.log: 0 net.link.pktap.total_tap_count: 0 net.link.pktap.count_unknown_if_type: 0 net.link.pktap.log: 0 net.key.debug: 0 net.key.spi_trycnt: 1000 net.key.spi_minval: 256 net.key.spi_maxval: 268435455 net.key.int_random: 60 net.key.larval_lifetime: 30 net.key.blockacq_count: 10 net.key.blockacq_lifetime: 20 net.key.esp_keymin: 256 net.key.esp_auth: 0 net.key.ah_keymin: 128 net.key.prefered_oldsa: 0 net.key.natt_keepalive_interval: 20 net.inet6.ip6.forwarding: 0 net.inet6.ip6.redirect: 1 net.inet6.ip6.hlim: 64 net.inet6.ip6.maxfragpackets: 2048 net.inet6.ip6.accept_rtadv: 1 net.inet6.ip6.keepfaith: 0 net.inet6.ip6.log_interval: 5 net.inet6.ip6.hdrnestlimit: 15 net.inet6.ip6.dad_count: 1 net.inet6.ip6.auto_flowlabel: 1 net.inet6.ip6.defmcasthlim: 1 net.inet6.ip6.gifhlim: 0 net.inet6.ip6.kame_version: 2009/apple-darwin net.inet6.ip6.use_deprecated: 1 net.inet6.ip6.rr_prune: 5 net.inet6.ip6.v6only: 0 net.inet6.ip6.rtexpire: 10 net.inet6.ip6.rtminexpire: 10 net.inet6.ip6.rtmaxcache: 128 net.inet6.ip6.use_tempaddr: 1 net.inet6.ip6.temppltime: 86400 net.inet6.ip6.tempvltime: 604800 net.inet6.ip6.auto_linklocal: 1 net.inet6.ip6.prefer_tempaddr: 1 net.inet6.ip6.use_defaultzone: 0 net.inet6.ip6.maxfrags: 4096 net.inet6.ip6.mcast_pmtu: 0 net.inet6.ip6.neighborgcthresh: 1024 net.inet6.ip6.maxifprefixes: 16 net.inet6.ip6.maxifdefrouters: 16 net.inet6.ip6.maxdynroutes: 1024 net.inet6.ip6.fragpackets: 0 net.inet6.ip6.adj_clear_hwcksum: 0 net.inet6.ip6.adj_partial_sum: 1 net.inet6.ip6.input_perf: 0 net.inet6.ip6.input_perf_bins: 0 net.inet6.ip6.check_interface: 1 net.inet6.ip6.checkinterface_debug: 0 net.inet6.ip6.output_perf: 0 net.inet6.ip6.output_perf_bins: 0 net.inet6.ip6.select_srcif_debug: 0 net.inet6.ip6.select_srcaddr_debug: 0 net.inet6.ip6.select_src_expensive_secondary_if: 0 net.inet6.ip6.select_src_strong_end: 1 net.inet6.ip6.mcast.maxgrpsrc: 512 net.inet6.ip6.mcast.maxsocksrc: 128 net.inet6.ip6.mcast.loop: 1 net.inet6.ip6.only_allow_rfc4193_prefixes: 0 net.inet6.ip6.clat_debug: 0 net.inet6.ip6.maxchainsent: 50 net.inet6.ip6.dad_enhanced: 1 net.inet6.ipsec6.def_policy: 1 net.inet6.ipsec6.esp_trans_deflev: 1 net.inet6.ipsec6.esp_net_deflev: 1 net.inet6.ipsec6.ah_trans_deflev: 1 net.inet6.ipsec6.ah_net_deflev: 1 net.inet6.ipsec6.ecn: 0 net.inet6.ipsec6.debug: 0 net.inet6.ipsec6.esp_randpad: -1 net.inet6.icmp6.rediraccept: 1 net.inet6.icmp6.redirtimeout: 600 net.inet6.icmp6.nd6_prune: 1 net.inet6.icmp6.nd6_delay: 5 net.inet6.icmp6.nd6_umaxtries: 3 net.inet6.icmp6.nd6_mmaxtries: 3 net.inet6.icmp6.nd6_useloopback: 1 net.inet6.icmp6.nodeinfo: 3 net.inet6.icmp6.errppslimit: 500 net.inet6.icmp6.nd6_debug: 0 net.inet6.icmp6.nd6_accept_6to4: 1 net.inet6.icmp6.nd6_optimistic_dad: 63 net.inet6.icmp6.nd6_onlink_ns_rfc4861: 0 net.inet6.icmp6.nd6_prune_lazy: 5 net.inet6.icmp6.rappslimit: 10 net.inet6.icmp6.nd6_llreach_base: 30 net.inet6.icmp6.nd6_maxsolstgt: 8 net.inet6.icmp6.nd6_maxproxiedsol: 4 net.inet6.icmp6.prproxy_cnt: 0 net.inet6.mld.gsrdelay: 10 net.inet6.mld.v1enable: 1 net.inet6.mld.v2enable: 1 net.inet6.mld.use_allow: 1 net.inet6.mld.debug: 0 net.inet6.send.opmode: 1 net.inet6.send.opstate: 1 net.systm.kctl.autorcvbufmax: 262144 net.systm.kctl.autorcvbufhigh: 0 net.systm.kctl.debug: 0 net.ndrv_multi_max_count: 1024 net.statistics_privcheck: 0 net.stats.debug: 0 net.stats.sendspace: 2048 net.stats.recvspace: 8192 net.utun.max_pending_input: 512 net.utun.ring_size: 64 net.utun.tx_fsw_ring_size: 64 net.utun.rx_fsw_ring_size: 128 net.ipsec.verify_interface_creation: 0 net.ipsec.max_pending_input: 512 net.ipsec.ring_size: 64 net.ipsec.tx_fsw_ring_size: 64 net.ipsec.rx_fsw_ring_size: 128 net.ipsec.debug: 0 net.necp.drop_all_level: 0 net.necp.debug: 0 net.necp.pass_loopback: 1 net.necp.pass_keepalives: 1 net.necp.socket_policy_count: 20 net.necp.socket_non_app_policy_count: 20 net.necp.ip_policy_count: 8 net.necp.session_count: 4 net.necp.client_fd_count: 92 net.necp.client_count: 104 net.necp.arena_count: 0 net.necp.nexus_flow_count: 0 net.necp.socket_flow_count: 50 net.necp.if_flow_count: 0 net.necp.observer_fd_count: 0 net.necp.observer_message_limit: 256 net.necp.sysctl_arena_count: 0 net.necp.drop_unentitled_level: 0 net.necp.pass_interpose: 1 net.necp.drop_dest_debug: 0 net.netagent.debug: 5 net.netagent.registered_count: 27 net.netagent.active_count: 26 net.cfil.log: 3 net.cfil.debug: 1 net.cfil.sock_attached_count: 0 net.cfil.active_count: 0 net.cfil.close_wait_timeout: 1000 net.cfil.sbtrim: 1 net.restricted_port.enforced: 1 net.restricted_port.verbose: 0 net.classq.verbose: 0 net.classq.sfb.holdtime: 0 net.classq.sfb.pboxtime: 0 net.classq.sfb.hinterval: 0 net.classq.sfb.increment: 82 net.classq.sfb.decrement: 16 net.classq.sfb.allocation: 0 net.classq.sfb.ratelimit: 0 net.classq.target_qdelay: 0 net.classq.update_interval: 0 net.pktsched.verbose: 0 net.qos.reset_dscp_to_wifi_ac_map: 0 net.qos.verbose: 0 net.qos.policy.restricted: 0 net.qos.policy.restrict_avapps: 0 net.qos.policy.wifi_enabled: 0 net.qos.policy.capable_enabled: 0 net.mpklog.enabled: 1 net.mpklog.type: 0 net.mpklog.version: 1 net.alf.loglevel: 55 net.alf.perm: 0 net.alf.defaultaction: 1 net.alf.mqcount: 0 debug.lowpri_throttle_max_iosize: 131072 debug.lowpri_throttle_tier1_window_msecs: 25 debug.lowpri_throttle_tier2_window_msecs: 100 debug.lowpri_throttle_tier3_window_msecs: 500 debug.lowpri_throttle_tier1_io_period_msecs: 40 debug.lowpri_throttle_tier2_io_period_msecs: 85 debug.lowpri_throttle_tier3_io_period_msecs: 200 debug.lowpri_throttle_tier1_io_period_ssd_msecs: 5 debug.lowpri_throttle_tier2_io_period_ssd_msecs: 15 debug.lowpri_throttle_tier3_io_period_ssd_msecs: 25 debug.lowpri_throttle_enabled: 1 debug.bpf_bufsize: 4096 debug.bpf_maxbufsize: 524288 debug.bpf_maxdevices: 256 debug.bpf_wantpktap: 0 debug.bpf_debug: 0 debug.sched: 2 debug.toggle_address_reuse: 0 debug.kextlog: 4083 debug.iotrace: 0 debug.noidle: 0 debug.darkwake: 3 debug.swd_panic: 1 debug.swd_timeout: 0 debug.swd_wake_timeout: 0 debug.swd_sleep_timeout: 0 debug.acpi_flags: 0 debug.acpi_layer: 0 debug.acpi_level: 0 debug.iokit: 0 debug.batman: 3 debug.defang_watchdogd: 0 debug.ioppf: 0 debug.intelfb.graphicsTracePointEnable: 0 debug.intelfb.IGInterruptControl: 0 debug.intelfb.fLastRequestedPState: 0 debug.intelfb.forceSlicesGTx: 0 debug.intelfb.forceSlicesEUx: 0 debug.intelfb.sliceInfo: 4 debug.intelfb.euInfo: 8 debug.intelfb.testCase: 0 debug.intelfb.temp0: 0 debug.intelfb.temp1: 0 debug.intelfb.temp2: 0 debug.intelfb.temp3: 0 debug.intelfb.temp4: 0 debug.intelfb.FakeType2Dongle: 0 debug.intelfb.forceDither: 0 debug.intelfb.enableDECounting: 0 debug.intelfb.enableGTHWFreqRead: 0 debug.agpm.LogLevel: 2 debug.intel.kdctlVersion: 2004312080 debug.intel.graphicsTracePointEnable: 0 debug.intel.IGInterruptControl: 0 debug.intel.perfEventEnable: 0 debug.intel.dtraceEnable: 0 debug.intel.oaEnable: 1 debug.intel.gpuUsageEnables: 15 debug.intel.gpuUsageEnablesCheck: 0 debug.intel.flipCount: 23894400 debug.intel.swapCount: 0 debug.intel.ringTakeSample: 0 debug.intel.ringOnSample: 0 debug.intel.GlobalUsageTotal_Busy_nSec: 0 debug.intel.GlobalUsageTotal_nSec: 0 debug.intel.ringMainUsage: 0 debug.intel.ringMediaUsage: 0 debug.intel.ringBlitUsage: 0 debug.intel.ringVEBoxUsage: 0 debug.intel.ringMain_nSec: 0 debug.intel.ringMedia_nSec: 0 debug.intel.ringBlit_nSec: 0 debug.intel.ringVEBox_nSec: 0 debug.intel.mSecCalcGPUBusy: 1000 debug.intel.schedPriCreditsHigh: -1 debug.intel.schedPriCreditsNormalHigh: -1 debug.intel.schedPriCreditsNormal: -1 debug.intel.schedPriCreditsLow: -1 debug.intel.schedPriPreemption: 1 debug.intel.schedPriElevatePID: -1 debug.intel.schedEnableThrottleOverride: 0 debug.intel.schedThrottleLowPriByVal: -1 debug.intel.schedThrottleNormalPriByVal: -1 debug.intel.schedThrottleNormalHighPriByVal: -1 debug.intel.schedThrottleHighPriByVal: -1 debug.intel.graphicsFirmwareTracePointEnable: 0 debug.intel.telemetryUsageReportmSec: 1000 debug.intel.telemetryVersion: 1 debug.intel.telemetryConfig: 4102 debug.intel.telemetryMode: 0 debug.intel.telemetrySampleLocations: 0 debug.intel.telemetryStartFrame: 0 debug.intel.telemetryStopFrame: 0 debug.intel.telemetryNumFrame: 0 debug.intel.telemetryTestCase: 0 debug.intel.telemetrySpot1: 0 debug.intel.telemetryStatPasses: 0 debug.intel.telemetryAltConfig: 0 debug.intel.temp0: 0 debug.intel.temp1: 0 debug.intel.temp2: 0 debug.intel.temp3: 0 debug.intel.temp4: 0 debug.acsock.debug: 0 0 hw.ncpu: 16 hw.byteorder: 1234 hw.memsize: 68719476736 hw.activecpu: 16 hw.physicalcpu: 8 hw.physicalcpu_max: 8 hw.logicalcpu: 16 hw.logicalcpu_max: 16 hw.cputype: 7 hw.cpusubtype: 8 hw.cpu64bit_capable: 1 hw.cpufamily: 260141638 hw.cacheconfig: 16 2 2 16 0 0 0 0 0 0 hw.cachesize: 68719476736 32768 262144 16777216 0 0 0 0 0 0 hw.pagesize: 4096 hw.pagesize32: 4096 hw.busfrequency: 400000000 hw.busfrequency_min: 400000000 hw.busfrequency_max: 400000000 hw.cpufrequency: 2300000000 hw.cpufrequency_min: 2300000000 hw.cpufrequency_max: 2300000000 hw.cachelinesize: 64 hw.l1icachesize: 32768 hw.l1dcachesize: 32768 hw.l2cachesize: 262144 hw.l3cachesize: 16777216 hw.tbfrequency: 1000000000 hw.packages: 1 hw.optional.floatingpoint: 1 hw.optional.mmx: 1 hw.optional.sse: 1 hw.optional.sse2: 1 hw.optional.sse3: 1 hw.optional.supplementalsse3: 1 hw.optional.sse4_1: 1 hw.optional.sse4_2: 1 hw.optional.x86_64: 1 hw.optional.aes: 1 hw.optional.avx1_0: 1 hw.optional.rdrand: 1 hw.optional.f16c: 1 hw.optional.enfstrg: 1 hw.optional.fma: 1 hw.optional.avx2_0: 1 hw.optional.bmi1: 1 hw.optional.bmi2: 1 hw.optional.rtm: 0 hw.optional.hle: 0 hw.optional.adx: 1 hw.optional.mpx: 0 hw.optional.sgx: 0 hw.optional.avx512f: 0 hw.optional.avx512cd: 0 hw.optional.avx512dq: 0 hw.optional.avx512bw: 0 hw.optional.avx512vl: 0 hw.optional.avx512ifma: 0 hw.optional.avx512vbmi: 0 hw.targettype: Mac hw.cputhreadtype: 1 machdep.user_idle_level: 0 machdep.cpu.max_basic: 22 machdep.cpu.max_ext: 2147483656 machdep.cpu.vendor: GenuineIntel machdep.cpu.brand_string: Intel(R) Core(TM) i9-9880H CPU @ 2.30GHz machdep.cpu.family: 6 machdep.cpu.model: 158 machdep.cpu.extmodel: 9 machdep.cpu.extfamily: 0 machdep.cpu.stepping: 13 machdep.cpu.feature_bits: 9221960262849657855 machdep.cpu.leaf7_feature_bits: 43804591 1073741824 machdep.cpu.leaf7_feature_bits_edx: 3154118144 machdep.cpu.extfeature_bits: 1241984796928 machdep.cpu.signature: 591597 machdep.cpu.brand: 0 machdep.cpu.features: FPU VME DE PSE TSC MSR PAE MCE CX8 APIC SEP MTRR PGE MCA CMOV PAT PSE36 CLFSH DS ACPI MMX FXSR SSE SSE2 SS HTT TM PBE SSE3 PCLMULQDQ DTES64 MON DSCPL VMX SMX EST TM2 SSSE3 FMA CX16 TPR PDCM SSE4.1 SSE4.2 x2APIC MOVBE POPCNT AES PCID XSAVE OSXSAVE SEGLIM64 TSCTMR AVX1.0 RDRAND F16C machdep.cpu.leaf7_features: RDWRFSGS TSC_THREAD_OFFSET SGX BMI1 AVX2 SMEP BMI2 ERMS INVPCID FPU_CSDS MPX RDSEED ADX SMAP CLFSOPT IPT SGXLC MDCLEAR IBRS STIBP L1DF ACAPMSR SSBD machdep.cpu.extfeatures: SYSCALL XD 1GBPAGE EM64T LAHF LZCNT PREFETCHW RDTSCP TSCI machdep.cpu.logical_per_package: 16 machdep.cpu.cores_per_package: 8 machdep.cpu.microcode_version: 214 machdep.cpu.processor_flag: 5 machdep.cpu.mwait.linesize_min: 64 machdep.cpu.mwait.linesize_max: 64 machdep.cpu.mwait.extensions: 3 machdep.cpu.mwait.sub_Cstates: 286531872 machdep.cpu.thermal.sensor: 1 machdep.cpu.thermal.dynamic_acceleration: 1 machdep.cpu.thermal.invariant_APIC_timer: 1 machdep.cpu.thermal.thresholds: 2 machdep.cpu.thermal.ACNT_MCNT: 1 machdep.cpu.thermal.core_power_limits: 1 machdep.cpu.thermal.fine_grain_clock_mod: 1 machdep.cpu.thermal.package_thermal_intr: 1 machdep.cpu.thermal.hardware_feedback: 0 machdep.cpu.thermal.energy_policy: 1 machdep.cpu.xsave.extended_state: 31 832 1088 0 machdep.cpu.xsave.extended_state1: 15 832 256 0 machdep.cpu.arch_perf.version: 4 machdep.cpu.arch_perf.number: 4 machdep.cpu.arch_perf.width: 48 machdep.cpu.arch_perf.events_number: 7 machdep.cpu.arch_perf.events: 0 machdep.cpu.arch_perf.fixed_number: 3 machdep.cpu.arch_perf.fixed_width: 48 machdep.cpu.cache.linesize: 64 machdep.cpu.cache.L2_associativity: 4 machdep.cpu.cache.size: 256 machdep.cpu.tlb.inst.large: 8 machdep.cpu.tlb.data.small: 64 machdep.cpu.tlb.data.small_level1: 64 machdep.cpu.address_bits.physical: 39 machdep.cpu.address_bits.virtual: 48 machdep.cpu.core_count: 8 machdep.cpu.thread_count: 16 machdep.cpu.tsc_ccc.numerator: 192 machdep.cpu.tsc_ccc.denominator: 2 machdep.vectors.timer: 221 machdep.vectors.IPI: 222 machdep.pmap.hashwalks: 2958447497 machdep.pmap.hashcnts: 2984999484 machdep.pmap.hashmax: 12 machdep.pmap.kernel_text_ps: 2097152 machdep.pmap.kern_pv_reserve: 16000 machdep.memmap.Conventional: 68606394368 machdep.memmap.RuntimeServices: 1511424 machdep.memmap.ACPIReclaim: 393216 machdep.memmap.ACPINVS: 798720 machdep.memmap.PalCode: 0 machdep.memmap.Reserved: 93601792 machdep.memmap.Unusable: 0 machdep.memmap.Other: 0 machdep.tsc.frequency: 2304000000 machdep.tsc.deep_idle_rebase: 1 machdep.tsc.at_boot: 44609340 machdep.tsc.rebase_abs_time: 7007917222 machdep.tsc.nanotime.tsc_base: 7350496250402236 machdep.tsc.nanotime.ns_base: 1564501391703051 machdep.tsc.nanotime.scale: 1864135111 machdep.tsc.nanotime.shift: 0 machdep.tsc.nanotime.generation: 914 machdep.misc.fast_uexc_support: 1 machdep.misc.panic_restart_timeout: 1266874889 machdep.misc.interrupt_latency_max: 0x0 0x49 0x2de845 machdep.misc.timer_queue_trace: machdep.misc.nmis: 0 machdep.xcpm.mode: 1 machdep.xcpm.pcps_mode: 0 machdep.xcpm.hard_plimit_max_100mhz_ratio: 48 machdep.xcpm.hard_plimit_min_100mhz_ratio: 8 machdep.xcpm.soft_plimit_max_100mhz_ratio: 48 machdep.xcpm.soft_plimit_min_100mhz_ratio: 8 machdep.xcpm.tuib_plimit_max_100mhz_ratio: 48 machdep.xcpm.tuib_plimit_min_100mhz_ratio: 8 machdep.xcpm.tuib_enabled: 0 machdep.xcpm.power_source: 0 machdep.xcpm.bootplim: 0 machdep.xcpm.bootpst: 48 machdep.xcpm.tuib_ns: 0 machdep.xcpm.vectors_loaded_count: 1 machdep.xcpm.ratio_change_ratelimit_ns: 3000000 machdep.xcpm.ratio_changes_total: 314937120 machdep.xcpm.maxbusdelay: 4294967295 machdep.xcpm.maxintdelay: 0 machdep.xcpm.mid_applications: 0 machdep.xcpm.mid_relaxations: 0 machdep.xcpm.mid_mode: 1 machdep.xcpm.mid_cst_control_limit: 0 machdep.xcpm.mid_mode_active: 0 machdep.xcpm.mbd_mode: 1 machdep.xcpm.mbd_applications: 5208 machdep.xcpm.mbd_relaxations: 6114 machdep.xcpm.forced_idle_ratio: 100 machdep.xcpm.forced_idle_period: 30000000 machdep.xcpm.deep_idle_log: 0 machdep.xcpm.qos_txfr: 1 machdep.xcpm.deep_idle_count: 906 machdep.xcpm.deep_idle_last_stats: 0:14:24 CC7:99% C2:0% C3:0% C6:0% C7:0% C8:0% C9:0% C10:99% machdep.xcpm.deep_idle_total_stats: 883:16:43 CC7:99% C2:0% C3:0% C6:0% C7:0% C8:0% C9:0% C10:99% machdep.xcpm.cpu_thermal_level: 4 machdep.xcpm.gpu_thermal_level: 0 machdep.xcpm.io_thermal_level: 0 machdep.xcpm.io_control_engages: 0 machdep.xcpm.io_control_disengages: 0 machdep.xcpm.io_filtered_reads: 1749 machdep.xcpm.pcps_rt_override_mode: 0 machdep.xcpm.io_cst_control_enabled: 1 machdep.xcpm.ring_boost_enabled: 0 machdep.xcpm.io_epp_boost_enabled: 1 machdep.xcpm.epp_override: 0 machdep.xcpm.perf_hints: 0 machdep.xcpm.pcps_rt_override_ns: 0 machdep.eager_timer_evaluations: 337046 machdep.eager_timer_evaluation_max: 4568988 machdep.x86_fp_simd_isr_uses: 0 machdep.uncore_sample_state: 0 machdep.uncore_sample_mask: 1 machdep.uncore_sample_ctl: 0 machdep.uncore_sample_interval_ms: 500 machdep.uncore_pcie_mmio_base: -536870912 audit.session.superuser_set_sflags_mask: 24576 audit.session.superuser_clear_sflags_mask: 24576 audit.session.member_set_sflags_mask: 0 audit.session.member_clear_sflags_mask: 16384 ktrace.state: 0 ktrace.owning_pid: 0 ktrace.background_pid: 0 ktrace.configured_by: kperf.limits.timer_min_period_ns: 20000 kperf.limits.timer_min_bg_period_ns: 1000000 kperf.limits.timer_min_pet_period_ns: 2000000 kperf.limits.timer_min_bg_pet_period_ns: 5000000 kperf.debug_level: 0 security.mac.platform_exec_logging: 0 security.mac.max_slots: 7 security.mac.labelvnodes: 1 security.mac.vnode_label_count: 79 security.mac.device_enforce: 1 security.mac.pipe_enforce: 1 security.mac.posixsem_enforce: 1 security.mac.posixshm_enforce: 1 security.mac.proc_enforce: 1 security.mac.socket_enforce: 1 security.mac.system_enforce: 1 security.mac.sysvmsg_enforce: 1 security.mac.sysvsem_enforce: 1 security.mac.sysvshm_enforce: 1 security.mac.vm_enforce: 1 security.mac.vnode_enforce: 1 security.mac.endpointsecurity.log_level: 1 security.mac.amfi.force_policy: 0 security.mac.amfi.verbose_logging: 0 security.mac.amfi.hsp_enable: 0 security.mac.sandbox.audio_active: 0 security.mac.sandbox.sentinel: .sb-c1504baa security.mac.qtn.sandbox_enforce: 1 security.mac.qtn.user_approved_exec: 1 security.mac.asp.cache_entry_count: 4682 security.mac.asp.cache_allocation_count: 54262 security.mac.asp.cache_release_count: 49580 security.mac.asp.exec_hook_work_time: 25969833 security.mac.asp.exec_hook_sleep_time: 0 security.mac.asp.exec_hook_count: 8967476 security.mac.asp.library_hook_time: 10270231 security.mac.asp.library_sleep_time: 0 security.mac.asp.library_hook_count: 15138034 security.mac.asp.pending_evaluation_count: 0 security.mac.asp.active_rule_version: 12863296251784933357 ============================================================================================= TESTING: checkCompilerMacros from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:164) Save the list of CPP macros defined by the C and C++ compiler, does not work for all compilers Executing: /PETSc3/petsc/apple/bin/mpicc -c -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags/conftest.c -E -dM stdout: #define OBJC_NEW_PROPERTIES 1 #define _LP64 1 #define __APPLE_CC__ 6000 #define __APPLE__ 1 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __ATOMIC_RELAXED 0 #define __ATOMIC_RELEASE 3 #define __ATOMIC_SEQ_CST 5 #define __BIGGEST_ALIGNMENT__ 16 #define __BLOCKS__ 1 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __CHAR16_TYPE__ unsigned short #define __CHAR32_TYPE__ unsigned int #define __CHAR_BIT__ 8 #define __CLANG_ATOMIC_BOOL_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR_LOCK_FREE 2 #define __CLANG_ATOMIC_INT_LOCK_FREE 2 #define __CLANG_ATOMIC_LLONG_LOCK_FREE 2 #define __CLANG_ATOMIC_LONG_LOCK_FREE 2 #define __CLANG_ATOMIC_POINTER_LOCK_FREE 2 #define __CLANG_ATOMIC_SHORT_LOCK_FREE 2 #define __CLANG_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __CONSTANT_CFSTRINGS__ 1 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_DENORM_MIN__ 4.9406564584124654e-324 #define __DBL_DIG__ 15 #define __DBL_EPSILON__ 2.2204460492503131e-16 #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_MAX_10_EXP__ 308 #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX__ 1.7976931348623157e+308 #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN__ 2.2250738585072014e-308 #define __DECIMAL_DIG__ __LDBL_DECIMAL_DIG__ #define __DYNAMIC__ 1 #define __ENVIRONMENT_MAC_OS_X_VERSION_MIN_REQUIRED__ 101500 #define __FINITE_MATH_ONLY__ 0 #define __FLT16_DECIMAL_DIG__ 5 #define __FLT16_DENORM_MIN__ 5.9604644775390625e-8F16 #define __FLT16_DIG__ 3 #define __FLT16_EPSILON__ 9.765625e-4F16 #define __FLT16_HAS_DENORM__ 1 #define __FLT16_HAS_INFINITY__ 1 #define __FLT16_HAS_QUIET_NAN__ 1 #define __FLT16_MANT_DIG__ 11 #define __FLT16_MAX_10_EXP__ 4 #define __FLT16_MAX_EXP__ 16 #define __FLT16_MAX__ 6.5504e+4F16 #define __FLT16_MIN_10_EXP__ (-4) #define __FLT16_MIN_EXP__ (-13) #define __FLT16_MIN__ 6.103515625e-5F16 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_DENORM_MIN__ 1.40129846e-45F #define __FLT_DIG__ 6 #define __FLT_EPSILON__ 1.19209290e-7F #define __FLT_EVAL_METHOD__ 0 #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __FLT_MANT_DIG__ 24 #define __FLT_MAX_10_EXP__ 38 #define __FLT_MAX_EXP__ 128 #define __FLT_MAX__ 3.40282347e+38F #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN__ 1.17549435e-38F #define __FLT_RADIX__ 2 #define __FXSR__ 1 #define __GCC_ASM_FLAG_OUTPUTS__ 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_16 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GNUC_MINOR__ 2 #define __GNUC_PATCHLEVEL__ 1 #define __GNUC_STDC_INLINE__ 1 #define __GNUC__ 4 #define __GXX_ABI_VERSION 1002 #define __INT16_C_SUFFIX__ #define __INT16_FMTd__ "hd" #define __INT16_FMTi__ "hi" #define __INT16_MAX__ 32767 #define __INT16_TYPE__ short #define __INT32_C_SUFFIX__ #define __INT32_FMTd__ "d" #define __INT32_FMTi__ "i" #define __INT32_MAX__ 2147483647 #define __INT32_TYPE__ int #define __INT64_C_SUFFIX__ LL #define __INT64_FMTd__ "lld" #define __INT64_FMTi__ "lli" #define __INT64_MAX__ 9223372036854775807LL #define __INT64_TYPE__ long long int #define __INT8_C_SUFFIX__ #define __INT8_FMTd__ "hhd" #define __INT8_FMTi__ "hhi" #define __INT8_MAX__ 127 #define __INT8_TYPE__ signed char #define __INTMAX_C_SUFFIX__ L #define __INTMAX_FMTd__ "ld" #define __INTMAX_FMTi__ "li" #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_TYPE__ long int #define __INTMAX_WIDTH__ 64 #define __INTPTR_FMTd__ "ld" #define __INTPTR_FMTi__ "li" #define __INTPTR_MAX__ 9223372036854775807L #define __INTPTR_TYPE__ long int #define __INTPTR_WIDTH__ 64 #define __INT_FAST16_FMTd__ "hd" #define __INT_FAST16_FMTi__ "hi" #define __INT_FAST16_MAX__ 32767 #define __INT_FAST16_TYPE__ short #define __INT_FAST32_FMTd__ "d" #define __INT_FAST32_FMTi__ "i" #define __INT_FAST32_MAX__ 2147483647 #define __INT_FAST32_TYPE__ int #define __INT_FAST64_FMTd__ "lld" #define __INT_FAST64_FMTi__ "lli" #define __INT_FAST64_MAX__ 9223372036854775807LL #define __INT_FAST64_TYPE__ long long int #define __INT_FAST8_FMTd__ "hhd" #define __INT_FAST8_FMTi__ "hhi" #define __INT_FAST8_MAX__ 127 #define __INT_FAST8_TYPE__ signed char #define __INT_LEAST16_FMTd__ "hd" #define __INT_LEAST16_FMTi__ "hi" #define __INT_LEAST16_MAX__ 32767 #define __INT_LEAST16_TYPE__ short #define __INT_LEAST32_FMTd__ "d" #define __INT_LEAST32_FMTi__ "i" #define __INT_LEAST32_MAX__ 2147483647 #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_FMTd__ "lld" #define __INT_LEAST64_FMTi__ "lli" #define __INT_LEAST64_MAX__ 9223372036854775807LL #define __INT_LEAST64_TYPE__ long long int #define __INT_LEAST8_FMTd__ "hhd" #define __INT_LEAST8_FMTi__ "hhi" #define __INT_LEAST8_MAX__ 127 #define __INT_LEAST8_TYPE__ signed char #define __INT_MAX__ 2147483647 #define __LDBL_DECIMAL_DIG__ 21 #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_DIG__ 18 #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_MAX_10_EXP__ 4932 #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LITTLE_ENDIAN__ 1 #define __LONG_LONG_MAX__ 9223372036854775807LL #define __LONG_MAX__ 9223372036854775807L #define __LP64__ 1 #define __MACH__ 1 #define __MMX__ 1 #define __NO_INLINE__ 1 #define __NO_MATH_INLINES 1 #define __OBJC_BOOL_IS_BOOL 0 #define __OPENCL_MEMORY_SCOPE_ALL_SVM_DEVICES 3 #define __OPENCL_MEMORY_SCOPE_DEVICE 2 #define __OPENCL_MEMORY_SCOPE_SUB_GROUP 4 #define __OPENCL_MEMORY_SCOPE_WORK_GROUP 1 #define __OPENCL_MEMORY_SCOPE_WORK_ITEM 0 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_PDP_ENDIAN__ 3412 #define __PIC__ 2 #define __POINTER_WIDTH__ 64 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __PTRDIFF_FMTd__ "ld" #define __PTRDIFF_FMTi__ "li" #define __PTRDIFF_MAX__ 9223372036854775807L #define __PTRDIFF_TYPE__ long int #define __PTRDIFF_WIDTH__ 64 #define __REGISTER_PREFIX__ #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_WIDTH__ 32 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_INT128__ 16 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_LONG__ 8 #define __SIZEOF_POINTER__ 8 #define __SIZEOF_PTRDIFF_T__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_SIZE_T__ 8 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZE_FMTX__ "lX" #define __SIZE_FMTo__ "lo" #define __SIZE_FMTu__ "lu" #define __SIZE_FMTx__ "lx" #define __SIZE_MAX__ 18446744073709551615UL #define __SIZE_TYPE__ long unsigned int #define __SIZE_WIDTH__ 64 #define __SSE2_MATH__ 1 #define __SSE2__ 1 #define __SSE3__ 1 #define __SSE4_1__ 1 #define __SSE_MATH__ 1 #define __SSE__ 1 #define __SSP__ 1 #define __SSSE3__ 1 #define __STDC_HOSTED__ 1 #define __STDC_NO_THREADS__ 1 #define __STDC_UTF_16__ 1 #define __STDC_UTF_32__ 1 #define __STDC_VERSION__ 201112L #define __STDC__ 1 #define __UINT16_C_SUFFIX__ #define __UINT16_FMTX__ "hX" #define __UINT16_FMTo__ "ho" #define __UINT16_FMTu__ "hu" #define __UINT16_FMTx__ "hx" #define __UINT16_MAX__ 65535 #define __UINT16_TYPE__ unsigned short #define __UINT32_C_SUFFIX__ U #define __UINT32_FMTX__ "X" #define __UINT32_FMTo__ "o" #define __UINT32_FMTu__ "u" #define __UINT32_FMTx__ "x" #define __UINT32_MAX__ 4294967295U #define __UINT32_TYPE__ unsigned int #define __UINT64_C_SUFFIX__ ULL #define __UINT64_FMTX__ "llX" #define __UINT64_FMTo__ "llo" #define __UINT64_FMTu__ "llu" #define __UINT64_FMTx__ "llx" #define __UINT64_MAX__ 18446744073709551615ULL #define __UINT64_TYPE__ long long unsigned int #define __UINT8_C_SUFFIX__ #define __UINT8_FMTX__ "hhX" #define __UINT8_FMTo__ "hho" #define __UINT8_FMTu__ "hhu" #define __UINT8_FMTx__ "hhx" #define __UINT8_MAX__ 255 #define __UINT8_TYPE__ unsigned char #define __UINTMAX_C_SUFFIX__ UL #define __UINTMAX_FMTX__ "lX" #define __UINTMAX_FMTo__ "lo" #define __UINTMAX_FMTu__ "lu" #define __UINTMAX_FMTx__ "lx" #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_TYPE__ long unsigned int #define __UINTMAX_WIDTH__ 64 #define __UINTPTR_FMTX__ "lX" #define __UINTPTR_FMTo__ "lo" #define __UINTPTR_FMTu__ "lu" #define __UINTPTR_FMTx__ "lx" #define __UINTPTR_MAX__ 18446744073709551615UL #define __UINTPTR_TYPE__ long unsigned int #define __UINTPTR_WIDTH__ 64 #define __UINT_FAST16_FMTX__ "hX" #define __UINT_FAST16_FMTo__ "ho" #define __UINT_FAST16_FMTu__ "hu" #define __UINT_FAST16_FMTx__ "hx" #define __UINT_FAST16_MAX__ 65535 #define __UINT_FAST16_TYPE__ unsigned short #define __UINT_FAST32_FMTX__ "X" #define __UINT_FAST32_FMTo__ "o" #define __UINT_FAST32_FMTu__ "u" #define __UINT_FAST32_FMTx__ "x" #define __UINT_FAST32_MAX__ 4294967295U #define __UINT_FAST32_TYPE__ unsigned int #define __UINT_FAST64_FMTX__ "llX" #define __UINT_FAST64_FMTo__ "llo" #define __UINT_FAST64_FMTu__ "llu" #define __UINT_FAST64_FMTx__ "llx" #define __UINT_FAST64_MAX__ 18446744073709551615ULL #define __UINT_FAST64_TYPE__ long long unsigned int #define __UINT_FAST8_FMTX__ "hhX" #define __UINT_FAST8_FMTo__ "hho" #define __UINT_FAST8_FMTu__ "hhu" #define __UINT_FAST8_FMTx__ "hhx" #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_LEAST16_FMTX__ "hX" #define __UINT_LEAST16_FMTo__ "ho" #define __UINT_LEAST16_FMTu__ "hu" #define __UINT_LEAST16_FMTx__ "hx" #define __UINT_LEAST16_MAX__ 65535 #define __UINT_LEAST16_TYPE__ unsigned short #define __UINT_LEAST32_FMTX__ "X" #define __UINT_LEAST32_FMTo__ "o" #define __UINT_LEAST32_FMTu__ "u" #define __UINT_LEAST32_FMTx__ "x" #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_FMTX__ "llX" #define __UINT_LEAST64_FMTo__ "llo" #define __UINT_LEAST64_FMTu__ "llu" #define __UINT_LEAST64_FMTx__ "llx" #define __UINT_LEAST64_MAX__ 18446744073709551615ULL #define __UINT_LEAST64_TYPE__ long long unsigned int #define __UINT_LEAST8_FMTX__ "hhX" #define __UINT_LEAST8_FMTo__ "hho" #define __UINT_LEAST8_FMTu__ "hhu" #define __UINT_LEAST8_FMTx__ "hhx" #define __UINT_LEAST8_MAX__ 255 #define __UINT_LEAST8_TYPE__ unsigned char #define __USER_LABEL_PREFIX__ _ #define __VERSION__ "4.2.1 Compatible Apple LLVM 11.0.3 (clang-1103.0.32.59)" #define __WCHAR_MAX__ 2147483647 #define __WCHAR_TYPE__ int #define __WCHAR_WIDTH__ 32 #define __WINT_MAX__ 2147483647 #define __WINT_TYPE__ int #define __WINT_WIDTH__ 32 #define __amd64 1 #define __amd64__ 1 #define __apple_build_version__ 11030032 #define __block __attribute__((__blocks__(byref))) #define __clang__ 1 #define __clang_major__ 11 #define __clang_minor__ 0 #define __clang_patchlevel__ 3 #define __clang_version__ "11.0.3 (clang-1103.0.32.59)" #define __code_model_small_ 1 #define __core2 1 #define __core2__ 1 #define __llvm__ 1 #define __nonnull _Nonnull #define __null_unspecified _Null_unspecified #define __nullable _Nullable #define __pic__ 2 #define __strong #define __tune_core2__ 1 #define __unsafe_unretained #define __weak __attribute__((objc_gc(weak))) #define __x86_64 1 #define __x86_64__ 1 Executing: /PETSc3/petsc/apple/bin/mpicxx -c -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags/conftest.cc -E -dM stdout: #define OBJC_NEW_PROPERTIES 1 #define _LP64 1 #define __APPLE_CC__ 6000 #define __APPLE__ 1 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __ATOMIC_RELAXED 0 #define __ATOMIC_RELEASE 3 #define __ATOMIC_SEQ_CST 5 #define __BIGGEST_ALIGNMENT__ 16 #define __BLOCKS__ 1 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __CHAR16_TYPE__ unsigned short #define __CHAR32_TYPE__ unsigned int #define __CHAR_BIT__ 8 #define __CLANG_ATOMIC_BOOL_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR_LOCK_FREE 2 #define __CLANG_ATOMIC_INT_LOCK_FREE 2 #define __CLANG_ATOMIC_LLONG_LOCK_FREE 2 #define __CLANG_ATOMIC_LONG_LOCK_FREE 2 #define __CLANG_ATOMIC_POINTER_LOCK_FREE 2 #define __CLANG_ATOMIC_SHORT_LOCK_FREE 2 #define __CLANG_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __CONSTANT_CFSTRINGS__ 1 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_DENORM_MIN__ 4.9406564584124654e-324 #define __DBL_DIG__ 15 #define __DBL_EPSILON__ 2.2204460492503131e-16 #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_MAX_10_EXP__ 308 #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX__ 1.7976931348623157e+308 #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN__ 2.2250738585072014e-308 #define __DECIMAL_DIG__ __LDBL_DECIMAL_DIG__ #define __DEPRECATED 1 #define __DYNAMIC__ 1 #define __ENVIRONMENT_MAC_OS_X_VERSION_MIN_REQUIRED__ 101500 #define __EXCEPTIONS 1 #define __FINITE_MATH_ONLY__ 0 #define __FLT16_DECIMAL_DIG__ 5 #define __FLT16_DENORM_MIN__ 5.9604644775390625e-8F16 #define __FLT16_DIG__ 3 #define __FLT16_EPSILON__ 9.765625e-4F16 #define __FLT16_HAS_DENORM__ 1 #define __FLT16_HAS_INFINITY__ 1 #define __FLT16_HAS_QUIET_NAN__ 1 #define __FLT16_MANT_DIG__ 11 #define __FLT16_MAX_10_EXP__ 4 #define __FLT16_MAX_EXP__ 16 #define __FLT16_MAX__ 6.5504e+4F16 #define __FLT16_MIN_10_EXP__ (-4) #define __FLT16_MIN_EXP__ (-13) #define __FLT16_MIN__ 6.103515625e-5F16 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_DENORM_MIN__ 1.40129846e-45F #define __FLT_DIG__ 6 #define __FLT_EPSILON__ 1.19209290e-7F #define __FLT_EVAL_METHOD__ 0 #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __FLT_MANT_DIG__ 24 #define __FLT_MAX_10_EXP__ 38 #define __FLT_MAX_EXP__ 128 #define __FLT_MAX__ 3.40282347e+38F #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN__ 1.17549435e-38F #define __FLT_RADIX__ 2 #define __FXSR__ 1 #define __GCC_ASM_FLAG_OUTPUTS__ 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_16 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GLIBCXX_BITSIZE_INT_N_0 128 #define __GLIBCXX_TYPE_INT_N_0 __int128 #define __GNUC_GNU_INLINE__ 1 #define __GNUC_MINOR__ 2 #define __GNUC_PATCHLEVEL__ 1 #define __GNUC__ 4 #define __GNUG__ 4 #define __GXX_ABI_VERSION 1002 #define __GXX_RTTI 1 #define __GXX_WEAK__ 1 #define __INT16_C_SUFFIX__ #define __INT16_FMTd__ "hd" #define __INT16_FMTi__ "hi" #define __INT16_MAX__ 32767 #define __INT16_TYPE__ short #define __INT32_C_SUFFIX__ #define __INT32_FMTd__ "d" #define __INT32_FMTi__ "i" #define __INT32_MAX__ 2147483647 #define __INT32_TYPE__ int #define __INT64_C_SUFFIX__ LL #define __INT64_FMTd__ "lld" #define __INT64_FMTi__ "lli" #define __INT64_MAX__ 9223372036854775807LL #define __INT64_TYPE__ long long int #define __INT8_C_SUFFIX__ #define __INT8_FMTd__ "hhd" #define __INT8_FMTi__ "hhi" #define __INT8_MAX__ 127 #define __INT8_TYPE__ signed char #define __INTMAX_C_SUFFIX__ L #define __INTMAX_FMTd__ "ld" #define __INTMAX_FMTi__ "li" #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_TYPE__ long int #define __INTMAX_WIDTH__ 64 #define __INTPTR_FMTd__ "ld" #define __INTPTR_FMTi__ "li" #define __INTPTR_MAX__ 9223372036854775807L #define __INTPTR_TYPE__ long int #define __INTPTR_WIDTH__ 64 #define __INT_FAST16_FMTd__ "hd" #define __INT_FAST16_FMTi__ "hi" #define __INT_FAST16_MAX__ 32767 #define __INT_FAST16_TYPE__ short #define __INT_FAST32_FMTd__ "d" #define __INT_FAST32_FMTi__ "i" #define __INT_FAST32_MAX__ 2147483647 #define __INT_FAST32_TYPE__ int #define __INT_FAST64_FMTd__ "lld" #define __INT_FAST64_FMTi__ "lli" #define __INT_FAST64_MAX__ 9223372036854775807LL #define __INT_FAST64_TYPE__ long long int #define __INT_FAST8_FMTd__ "hhd" #define __INT_FAST8_FMTi__ "hhi" #define __INT_FAST8_MAX__ 127 #define __INT_FAST8_TYPE__ signed char #define __INT_LEAST16_FMTd__ "hd" #define __INT_LEAST16_FMTi__ "hi" #define __INT_LEAST16_MAX__ 32767 #define __INT_LEAST16_TYPE__ short #define __INT_LEAST32_FMTd__ "d" #define __INT_LEAST32_FMTi__ "i" #define __INT_LEAST32_MAX__ 2147483647 #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_FMTd__ "lld" #define __INT_LEAST64_FMTi__ "lli" #define __INT_LEAST64_MAX__ 9223372036854775807LL #define __INT_LEAST64_TYPE__ long long int #define __INT_LEAST8_FMTd__ "hhd" #define __INT_LEAST8_FMTi__ "hhi" #define __INT_LEAST8_MAX__ 127 #define __INT_LEAST8_TYPE__ signed char #define __INT_MAX__ 2147483647 #define __LDBL_DECIMAL_DIG__ 21 #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_DIG__ 18 #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_MAX_10_EXP__ 4932 #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LITTLE_ENDIAN__ 1 #define __LONG_LONG_MAX__ 9223372036854775807LL #define __LONG_MAX__ 9223372036854775807L #define __LP64__ 1 #define __MACH__ 1 #define __MMX__ 1 #define __NO_INLINE__ 1 #define __NO_MATH_INLINES 1 #define __OBJC_BOOL_IS_BOOL 0 #define __OPENCL_MEMORY_SCOPE_ALL_SVM_DEVICES 3 #define __OPENCL_MEMORY_SCOPE_DEVICE 2 #define __OPENCL_MEMORY_SCOPE_SUB_GROUP 4 #define __OPENCL_MEMORY_SCOPE_WORK_GROUP 1 #define __OPENCL_MEMORY_SCOPE_WORK_ITEM 0 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_PDP_ENDIAN__ 3412 #define __PIC__ 2 #define __POINTER_WIDTH__ 64 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __PTRDIFF_FMTd__ "ld" #define __PTRDIFF_FMTi__ "li" #define __PTRDIFF_MAX__ 9223372036854775807L #define __PTRDIFF_TYPE__ long int #define __PTRDIFF_WIDTH__ 64 #define __REGISTER_PREFIX__ #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_WIDTH__ 32 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_INT128__ 16 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_LONG__ 8 #define __SIZEOF_POINTER__ 8 #define __SIZEOF_PTRDIFF_T__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_SIZE_T__ 8 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZE_FMTX__ "lX" #define __SIZE_FMTo__ "lo" #define __SIZE_FMTu__ "lu" #define __SIZE_FMTx__ "lx" #define __SIZE_MAX__ 18446744073709551615UL #define __SIZE_TYPE__ long unsigned int #define __SIZE_WIDTH__ 64 #define __SSE2_MATH__ 1 #define __SSE2__ 1 #define __SSE3__ 1 #define __SSE4_1__ 1 #define __SSE_MATH__ 1 #define __SSE__ 1 #define __SSP__ 1 #define __SSSE3__ 1 #define __STDCPP_DEFAULT_NEW_ALIGNMENT__ 16UL #define __STDC_HOSTED__ 1 #define __STDC_NO_THREADS__ 1 #define __STDC_UTF_16__ 1 #define __STDC_UTF_32__ 1 #define __STDC__ 1 #define __UINT16_C_SUFFIX__ #define __UINT16_FMTX__ "hX" #define __UINT16_FMTo__ "ho" #define __UINT16_FMTu__ "hu" #define __UINT16_FMTx__ "hx" #define __UINT16_MAX__ 65535 #define __UINT16_TYPE__ unsigned short #define __UINT32_C_SUFFIX__ U #define __UINT32_FMTX__ "X" #define __UINT32_FMTo__ "o" #define __UINT32_FMTu__ "u" #define __UINT32_FMTx__ "x" #define __UINT32_MAX__ 4294967295U #define __UINT32_TYPE__ unsigned int #define __UINT64_C_SUFFIX__ ULL #define __UINT64_FMTX__ "llX" #define __UINT64_FMTo__ "llo" #define __UINT64_FMTu__ "llu" #define __UINT64_FMTx__ "llx" #define __UINT64_MAX__ 18446744073709551615ULL #define __UINT64_TYPE__ long long unsigned int #define __UINT8_C_SUFFIX__ #define __UINT8_FMTX__ "hhX" #define __UINT8_FMTo__ "hho" #define __UINT8_FMTu__ "hhu" #define __UINT8_FMTx__ "hhx" #define __UINT8_MAX__ 255 #define __UINT8_TYPE__ unsigned char #define __UINTMAX_C_SUFFIX__ UL #define __UINTMAX_FMTX__ "lX" #define __UINTMAX_FMTo__ "lo" #define __UINTMAX_FMTu__ "lu" #define __UINTMAX_FMTx__ "lx" #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_TYPE__ long unsigned int #define __UINTMAX_WIDTH__ 64 #define __UINTPTR_FMTX__ "lX" #define __UINTPTR_FMTo__ "lo" #define __UINTPTR_FMTu__ "lu" #define __UINTPTR_FMTx__ "lx" #define __UINTPTR_MAX__ 18446744073709551615UL #define __UINTPTR_TYPE__ long unsigned int #define __UINTPTR_WIDTH__ 64 #define __UINT_FAST16_FMTX__ "hX" #define __UINT_FAST16_FMTo__ "ho" #define __UINT_FAST16_FMTu__ "hu" #define __UINT_FAST16_FMTx__ "hx" #define __UINT_FAST16_MAX__ 65535 #define __UINT_FAST16_TYPE__ unsigned short #define __UINT_FAST32_FMTX__ "X" #define __UINT_FAST32_FMTo__ "o" #define __UINT_FAST32_FMTu__ "u" #define __UINT_FAST32_FMTx__ "x" #define __UINT_FAST32_MAX__ 4294967295U #define __UINT_FAST32_TYPE__ unsigned int #define __UINT_FAST64_FMTX__ "llX" #define __UINT_FAST64_FMTo__ "llo" #define __UINT_FAST64_FMTu__ "llu" #define __UINT_FAST64_FMTx__ "llx" #define __UINT_FAST64_MAX__ 18446744073709551615ULL #define __UINT_FAST64_TYPE__ long long unsigned int #define __UINT_FAST8_FMTX__ "hhX" #define __UINT_FAST8_FMTo__ "hho" #define __UINT_FAST8_FMTu__ "hhu" #define __UINT_FAST8_FMTx__ "hhx" #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_LEAST16_FMTX__ "hX" #define __UINT_LEAST16_FMTo__ "ho" #define __UINT_LEAST16_FMTu__ "hu" #define __UINT_LEAST16_FMTx__ "hx" #define __UINT_LEAST16_MAX__ 65535 #define __UINT_LEAST16_TYPE__ unsigned short #define __UINT_LEAST32_FMTX__ "X" #define __UINT_LEAST32_FMTo__ "o" #define __UINT_LEAST32_FMTu__ "u" #define __UINT_LEAST32_FMTx__ "x" #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_FMTX__ "llX" #define __UINT_LEAST64_FMTo__ "llo" #define __UINT_LEAST64_FMTu__ "llu" #define __UINT_LEAST64_FMTx__ "llx" #define __UINT_LEAST64_MAX__ 18446744073709551615ULL #define __UINT_LEAST64_TYPE__ long long unsigned int #define __UINT_LEAST8_FMTX__ "hhX" #define __UINT_LEAST8_FMTo__ "hho" #define __UINT_LEAST8_FMTu__ "hhu" #define __UINT_LEAST8_FMTx__ "hhx" #define __UINT_LEAST8_MAX__ 255 #define __UINT_LEAST8_TYPE__ unsigned char #define __USER_LABEL_PREFIX__ _ #define __VERSION__ "4.2.1 Compatible Apple LLVM 11.0.3 (clang-1103.0.32.59)" #define __WCHAR_MAX__ 2147483647 #define __WCHAR_TYPE__ int #define __WCHAR_WIDTH__ 32 #define __WINT_MAX__ 2147483647 #define __WINT_TYPE__ int #define __WINT_WIDTH__ 32 #define __amd64 1 #define __amd64__ 1 #define __apple_build_version__ 11030032 #define __block __attribute__((__blocks__(byref))) #define __clang__ 1 #define __clang_major__ 11 #define __clang_minor__ 0 #define __clang_patchlevel__ 3 #define __clang_version__ "11.0.3 (clang-1103.0.32.59)" #define __code_model_small_ 1 #define __core2 1 #define __core2__ 1 #define __cplusplus 199711L #define __cpp_exceptions 199711L #define __cpp_impl_destroying_delete 201806L #define __cpp_rtti 199711L #define __cpp_threadsafe_static_init 200806L #define __llvm__ 1 #define __nonnull _Nonnull #define __null_unspecified _Null_unspecified #define __nullable _Nullable #define __pic__ 2 #define __private_extern__ extern #define __strong #define __tune_core2__ 1 #define __unsafe_unretained #define __weak __attribute__((objc_gc(weak))) #define __x86_64 1 #define __x86_64__ 1 child config.compilerFlags 7.597913 Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt ============================================================================================= TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1831) Check for -std=c99 or equivalent flag Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 Accepted C99 compile flag: ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:186) Check for the C/CXX restrict keyword Executing: /PETSc3/petsc/apple/bin/mpicc -V ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.c:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:447) Activate format string checking if using the GNU compilers ============================================================================================= TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:156) Check for C inline keyword ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ============================================================================================= TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:458) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ============================================================================================= TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:250) Determines the libraries needed to link with C compiled code ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1782) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -MMD -MP /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Trying Cxx compiler flag -MMD -MP Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC -MMD -MP /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Executing: /PETSc3/petsc/apple/bin/mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:186) Check for the C/CXX restrict keyword Executing: /PETSc3/petsc/apple/bin/mpicc -V ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.cc:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" Executing: /PETSc3/petsc/apple/bin/mpicxx --help | head -n 500 Detected CLANG compiler ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:527) Determine the CXX dialect supported by the compiler(language) [and correspoding compiler option - if any]. isGNUish indicates if the compiler is gnu compliant (i.e. clang). -with--dialect can take options: auto: use highest supported dialect configure can determine [[c|gnu][xx|++]]20: not yet supported [[c|gnu][xx|++]]17: gnu++17 or c++17 [[c|gnu][xx|++]]14: gnu++14 or c++14 [[c|gnu][xx|++]]11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default On return this function sets the following values: - if needed, appends the relevant CXX dialect flag to compiler flags - self.cxxDialectRange = (minSupportedDialect,maxSupportedDialect) (e.g. ('c++03','c++14')) - self.addDefine('HAVE_{LANG}_DIALECT_CXX{DIALECT_NUM}',1) for every supported dialect - self.lang+'dialect' = 'c++'+maxDialectNumber (e.g. 'c++14') but ONLY if the user specifically requests a dialect version, otherwise this is not set or raises a RuntimeException if either: - The user has set both the --with-dialect=[...] configure options and -std=[...] in their compiler flags - The combination of specifically requested packages cannnot all be compiled with the same flag - The compiler does not support at minimum -std=c++03 checkCxxDialect: checking C++ dialect version for language "CXX" using compiler "/PETSc3/petsc/apple/bin/mpicxx" checkCxxDialect: PETSc believes compiler (/PETSc3/petsc/apple/bin/mpicxx) IS gnu-ish checkCxxDialect: configure option after sanitization: --with-cxx-dialect=AUTO checkCxxDialect: user has NOT explicitly selected dialect AUTO for CXX checkCxxDialect: Have potential flag pool: - -std=gnu++17 - -std=c++17 - -std=gnu++14 - -std=c++14 - -std=gnu++11 - -std=c++11 - -std=gnu++03 - -std=c++03 checkCxxDialect: checking CXX 17 for Cxx with -std=gnu++17 Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC -std=gnu++17 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" // c++03 includes #include template void ignore(const T&) { } // silence unused variable warnings class valClass { public: int i; valClass() { i = 3; } valClass(int x) : i(x) { } }; // c++11 includes #include #include #include class MoveSemantics { std::unique_ptr _member; public: MoveSemantics(int val = 4) : _member(new valClass(val)) { } MoveSemantics& operator=(MoveSemantics &&other) noexcept = default; }; template constexpr T Cubed( T x ) { return x*x*x; } auto trailing(int x) -> int { return x+2; } enum class Shapes : int {SQUARE,CIRCLE}; template struct Tuple { }; using PetscErrorCode = int; // c++14 includes #include template constexpr T pi = T(3.1415926535897932385L); // variable template // c++17 includes #include #include #include #include [[nodiscard]] int nodiscardFunc() { return 0; } struct S2 { // static inline member variables since c++17 static inline int var = 8675309; void f(int i); }; void S2::f(int i) { // until c++17: Error: invalid syntax // since c++17: OK: captures the enclosing S2 by copy auto lmbd = [=, *this] { std::cout << i << " " << this->var << std::endl; }; lmbd(); } int main() { // c++03 body valClass cls = valClass(); // value initialization int i = cls.i; // i is not declared const const int& rci = i; // but rci is const_cast(rci) = 4; // c++11 body constexpr int big_value = 1234; decltype(big_value) ierr = big_value; auto ret = trailing(ierr); MoveSemantics bob; MoveSemantics alice; alice = std::move(bob);ignore(alice); Tuple<> t0;ignore(t0); Tuple t1;ignore(t1); Tuple t2;ignore(t2); std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x << ret << std::endl; // c++14 body auto ptr = std::make_unique(); *ptr = 1; std::cout << pi << std::endl; constexpr const std::complex const_i(0.0,1.0); auto lambda = [](auto x, auto y) { return x + y; }; std::cout << lambda(3,4) << std::real(const_i) << std::endl; // c++17 body std::variant v,w; v = 42; // v contains int int ivar = std::get(v); w = std::get<0>(v); // same effect as the previous line w = v; // same effect as the previous line S2 foo; foo.f(ivar); if constexpr (std::is_arithmetic_v) std::cout << "c++17" << std::endl; typedef std::integral_constant squareShape; // static_assert with no message since c++17 static_assert(std::is_same_v); auto val = nodiscardFunc();ignore(val); ; return 0; } Output from compiling with -fPIC -std=gnu++17 Added Cxx compiler flag -std=gnu++17 checkCxxDialect: success using -std=gnu++17 for Cxx dialect c++17, set new cxxDialectRange: ('c++03', 'c++17') Defined "HAVE_CXX_DIALECT_CXX03" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX17" to "1" ============================================================================================= TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:477) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC -std=gnu++17 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c:5:22: warning: private field 'i' is not used [-Wunused-private-field] class somename { int i; };; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers/conftest.c:5:22: warning: private field 'i' is not used [-Wunused-private-field] class somename { int i; };; ^ 1 warning generated. ============================================================================================= TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:171) Check for C++ inline keyword ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC -std=gnu++17 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ============================================================================================= TESTING: checkCxxComplexFix from config.compilers(config/BuildSystem/config/compilers.py:875) Determine if the CXX compiler supports utilities provided by petsccxxcomplexfix.h ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC -std=gnu++17 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define Type int #define PetscReal double #define PetscComplex std::complex /* The two lines, from petsccxxcomplexfix.h, can cause the combination "C++14 + GCC-4.x libstdc++ library" to fail, complaining imag() is not marked const. If the compiler can compile these two lines, it should be able to compile other lines. */ static inline PetscComplex operator-(const Type& lhs, const PetscComplex& rhs) { return PetscReal(lhs) - const_cast(rhs); } static inline PetscComplex operator/(const Type& lhs, const PetscComplex& rhs) { return PetscReal(lhs) / const_cast(rhs); } int main() { Type x = 2; PetscComplex y(1.0,1.0),z,w; z = x - y; w = x / y; std::cout << z << w; ; return 0; } the CXX compiler supports petsccxxcomplexfix.h Defined "HAVE_CXX_COMPLEX_FIX" to "1" ============================================================================================= TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:904) Determines the libraries needed to link with C++ from C and Fortran ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC -std=gnu++17 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "std::__1::locale::use_facet(std::__1::locale::id&) const", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::ios_base::getloc() const", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)", referenced from: std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char) in confc.o "std::__1::basic_string, std::__1::allocator >::~basic_string()", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::~sentry()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::cout", referenced from: asub() in confc.o "std::__1::ctype::id", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::locale::~locale()", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::ios_base::__set_badbit_and_consider_rethrow()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::clear(unsigned int)", referenced from: std::__1::ios_base::setstate(unsigned int) in confc.o "std::terminate()", referenced from: ___clang_call_terminate in confc.o "typeinfo for int", referenced from: asub() in confc.o GCC_except_table0 in confc.o "operator delete(void*)", referenced from: std::__1::_DeallocateCaller::__do_call(void*) in confc.o "operator delete(void*, std::align_val_t)", referenced from: void std::__1::_DeallocateCaller::__do_call(void*, std::align_val_t) in confc.o "___cxa_allocate_exception", referenced from: asub() in confc.o "___cxa_begin_catch", referenced from: asub() in confc.o ___clang_call_terminate in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_end_catch", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_throw", referenced from: asub() in confc.o "___gxx_personality_v0", referenced from: asub() in confc.o std::__1::__vector_base >::__vector_base() in confc.o std::__1::vector >::~vector() in confc.o std::__1::__vector_base >::__destruct_at_end(int*) in confc.o std::__1::allocator::deallocate(int*, unsigned long) in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o ... ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "std::__1::locale::use_facet(std::__1::locale::id&) const", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::ios_base::getloc() const", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)", referenced from: std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char) in confc.o "std::__1::basic_string, std::__1::allocator >::~basic_string()", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::~sentry()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::cout", referenced from: asub() in confc.o "std::__1::ctype::id", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::locale::~locale()", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::ios_base::__set_badbit_and_consider_rethrow()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::clear(unsigned int)", referenced from: std::__1::ios_base::setstate(unsigned int) in confc.o "std::terminate()", referenced from: ___clang_call_terminate in confc.o "typeinfo for int", referenced from: asub() in confc.o GCC_except_table0 in confc.o "operator delete(void*)", referenced from: std::__1::_DeallocateCaller::__do_call(void*) in confc.o "operator delete(void*, std::align_val_t)", referenced from: void std::__1::_DeallocateCaller::__do_call(void*, std::align_val_t) in confc.o "___cxa_allocate_exception", referenced from: asub() in confc.o "___cxa_begin_catch", referenced from: asub() in confc.o ___clang_call_terminate in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_end_catch", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_throw", referenced from: asub() in confc.o "___gxx_personality_v0", referenced from: asub() in confc.o std::__1::__vector_base >::__vector_base() in confc.o std::__1::vector >::~vector() in confc.o std::__1::__vector_base >::__destruct_at_end(int*) in confc.o std::__1::allocator::deallocate(int*, unsigned long) in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o ... ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "std::__1::locale::use_facet(std::__1::locale::id&) const", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::ios_base::getloc() const", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)", referenced from: std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char) in confc.o "std::__1::basic_string, std::__1::allocator >::~basic_string()", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::~sentry()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::cout", referenced from: asub() in confc.o "std::__1::ctype::id", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::locale::~locale()", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::ios_base::__set_badbit_and_consider_rethrow()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::clear(unsigned int)", referenced from: std::__1::ios_base::setstate(unsigned int) in confc.o "std::terminate()", referenced from: ___clang_call_terminate in confc.o "typeinfo for int", referenced from: asub() in confc.o GCC_except_table0 in confc.o "operator delete(void*)", referenced from: std::__1::_DeallocateCaller::__do_call(void*) in confc.o "operator delete(void*, std::align_val_t)", referenced from: void std::__1::_DeallocateCaller::__do_call(void*, std::align_val_t) in confc.o "___cxa_allocate_exception", referenced from: asub() in confc.o "___cxa_begin_catch", referenced from: asub() in confc.o ___clang_call_terminate in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_end_catch", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_throw", referenced from: asub() in confc.o "___gxx_personality_v0", referenced from: asub() in confc.o std::__1::__vector_base >::__vector_base() in confc.o std::__1::vector >::~vector() in confc.o std::__1::__vector_base >::__destruct_at_end(int*) in confc.o std::__1::allocator::deallocate(int*, unsigned long) in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o ... ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 500 Detected CLANG compiler ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC -std=gnu++17 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/conftest.o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers/confc.o -lc++ -ldl compilers: C++ requires -lc++ to link with C compiler Executing: /PETSc3/petsc/apple/bin/mpicc --version stdout: Apple clang version 11.0.3 (clang-1103.0.32.59) Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin Executing: /PETSc3/petsc/apple/bin/mpicxx -V ============================================================================================= TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1913) child config.compilers 8.935189 ============================================================================================= TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure/conftest.c:6:7: warning: unused variable 'closure' [-Wunused-variable] int (^closure)(int);; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure/conftest.o -lc++ -ldl Defined "HAVE_CLOSURE" to "1" child config.utilities.closure 0.635817 child config.compilersFortran 0.000053 ============================================================================================= TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:107) ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c ======== Checking running linked program ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.o -lc++ -ldl Testing executable /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest to see if it can be run Executing: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest ============================================================================================= TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:140) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c ============================================================================================= TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:175) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:197) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ============================================================================================= TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:8:8: warning: if statement has empty body [-Wempty-body] if (pi); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:8:8: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_MACHINE_ENDIAN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_MACHINE_ENDIAN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 11.838252 ============================================================================================= TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails/conftest.c:4:60: error: use of undeclared identifier '_SC_LEVEL1_DCACHE_LINESIZE'; did you mean 'getconf_LEVEL1_DCACHE_LINESIZE'? long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } ^~~~~~~~~~~~~~~~~~~~~~~~~~ getconf_LEVEL1_DCACHE_LINESIZE /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails/conftest.c:4:6: note: 'getconf_LEVEL1_DCACHE_LINESIZE' declared here long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ======== Checking running linked program ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails/conftest.o -lc++ -ldl Testing executable /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails/conftest to see if it can be run Executing: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "32" child config.utilities.cacheDetails 1.508082 ============================================================================================= TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:11:18: warning: unused variable 'a' [-Wunused-variable] struct sigaction a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ============================================================================================= TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:11:1: error: unknown type name '__int64'; did you mean '__int64_t'? __int64 a;; ^~~~~~~ __int64_t /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/i386/_types.h:46:33: note: '__int64_t' declared here typedef long long __int64_t; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ============================================================================================= TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] size_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ============================================================================================= TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] mode_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] off_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ============================================================================================= TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:11:9: warning: unused variable 'a' [-Wunused-variable] int32_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ============================================================================================= TESTING: checkPID from config.types(config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] pid_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ============================================================================================= TESTING: checkUID from config.types(config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c ============================================================================================= TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -lc++ -ldl ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { double _Complex x; x = I; ; return 0; } Defined "HAVE_C99_COMPLEX" to "1" ============================================================================================= TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:95) Check for complex numbers in namespace std ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC -std=gnu++17 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.cc:6:22: warning: unused variable 'x' [-Wunused-variable] std::complex x; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -lc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ============================================================================================= TESTING: checkConst from config.types(config/BuildSystem/config/types.py:106) Checks for working const, and if not found defines it to empty string ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:24:16: warning: if statement has empty body [-Wempty-body] if (zero.x); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:24:16: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:25:14: warning: if statement has empty body [-Wempty-body] if (x[0]); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:25:14: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:31:14: warning: if statement has empty body [-Wempty-body] if (*s); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:31:14: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:52:15: warning: if statement has empty body [-Wempty-body] if (foo); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:52:15: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:46:20: warning: variable 'b' is uninitialized when used here [-Wuninitialized] struct s *b; b->j = 5; ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:46:18: note: initialize the variable 'b' to silence this warning struct s *b; b->j = 5; ^ = 0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:30:8: warning: variable 't' is uninitialized when used here [-Wuninitialized] *t++ = 0; ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c:27:14: note: initialize the variable 't' to silence this warning char *t; ^ = 0 6 warnings generated. Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:162) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" Defined "USING_64BIT_PTR" to "1" ============================================================================================= TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:196) ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC -std=gnu++17 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ============================================================================================= TESTING: checkMaxPathLen from config.types(config/BuildSystem/config/types.py:218) Determining PETSC_MAX_PATH_LEN ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types/conftest.c Defined "MAX_PATH_LEN" to "1024" child config.types 9.079444 ============================================================================================= TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.001818 ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lfpe -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lsocket -lnsl -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lfpe -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lsocket -lnsl -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:296) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lc++ -ldl CheckMath: using math library [] ============================================================================================= TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:315) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lc++ -ldl erf() found Defined "HAVE_ERF" to "1" ============================================================================================= TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:324) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library [] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lc++ -ldl tgamma() found Defined "HAVE_TGAMMA" to "1" ============================================================================================= TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:333) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library [] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lc++ -ldl lgamma() found Defined "HAVE_LGAMMA" to "1" ============================================================================================= TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:346) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lc++ -ldl Defined "HAVE_FENV_H" to "1" ============================================================================================= TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:354) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c:5:81: warning: unused variable 'y' [-Wunused-variable] static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lc++ -ldl log2() found Defined "HAVE_LOG2" to "1" ============================================================================================= TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:363) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lc++ -ldl realtime functions are linked in by default ============================================================================================= TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:379) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -ldl -lc++ -ldl Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 7.020958 ============================================================================================= TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:38) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: __check_bgl_perfctr_void in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: __check_bgl_perfctr_void in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: __check_bgl_perfctr_void in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [ADIOI_BGL_Open] in library [''] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: __check_ADIOI_BGL_Open in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: __check_ADIOI_BGL_Open in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: __check_ADIOI_BGL_Open in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): *********BGL/IBM test failure Defined "USE_BACKWARD_LOOP" to "1" Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ============================================================================================= TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:99) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 1.164194 child config.atomics 0.000009 ============================================================================================= TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl ============================================================================================= TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl ============================================================================================= TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ============================================================================================= TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ============================================================================================= TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_MEMMOVE" to "1" ============================================================================================= TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC -std=gnu++17 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Defined "SIGNAL_CAST" to " " ============================================================================================= TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c:6:25: error: assigning to 'int' from incompatible type 'void' int ierr; void *p; ierr = free(p); return 0; ^ ~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_VA_COPY" to "1" ============================================================================================= TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _access snprintf realpath dlsym bzero _getcwd _pipe getwd uname _lseek sleep _sleep lseek usleep dlclose gethostname clock access _snprintf dlerror fork getpagesize sbreak memalign getcwd gethostbyname readlink _set_output_format PXFGETARG strcasecmp dlopen fpresetsticky drand48 socket popen getrusage _mkdir time fpsetsticky stricmp] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c:16:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c:16:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c:19:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c:19:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c:44:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c:44:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _access(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char _pipe(); char getwd(); char uname(); char _lseek(); char sleep(); char _sleep(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char access(); char _snprintf(); char dlerror(); char fork(); char getpagesize(); char sbreak(); char memalign(); char getcwd(); char gethostbyname(); char readlink(); char _set_output_format(); char PXFGETARG(); char strcasecmp(); char dlopen(); char fpresetsticky(); char drand48(); char socket(); char popen(); char getrusage(); char _mkdir(); char time(); char fpsetsticky(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o "__access", referenced from: _main in conftest.o "__getcwd", referenced from: _main in conftest.o "__lseek", referenced from: _main in conftest.o "__mkdir", referenced from: _main in conftest.o "__pipe", referenced from: _main in conftest.o "__set_output_format", referenced from: _main in conftest.o "__sleep", referenced from: _main in conftest.o "__snprintf", referenced from: _main in conftest.o "_fpresetsticky", referenced from: _main in conftest.o "_fpsetsticky", referenced from: _main in conftest.o "_memalign", referenced from: _main in conftest.o "_sbreak", referenced from: _main in conftest.o "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o "__access", referenced from: _main in conftest.o "__getcwd", referenced from: _main in conftest.o "__lseek", referenced from: _main in conftest.o "__mkdir", referenced from: _main in conftest.o "__pipe", referenced from: _main in conftest.o "__set_output_format", referenced from: _main in conftest.o "__sleep", referenced from: _main in conftest.o "__snprintf", referenced from: _main in conftest.o "_fpresetsticky", referenced from: _main in conftest.o "_fpsetsticky", referenced from: _main in conftest.o "_memalign", referenced from: _main in conftest.o "_sbreak", referenced from: _main in conftest.o "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o "__access", referenced from: _main in conftest.o "__getcwd", referenced from: _main in conftest.o "__lseek", referenced from: _main in conftest.o "__mkdir", referenced from: _main in conftest.o "__pipe", referenced from: _main in conftest.o "__set_output_format", referenced from: _main in conftest.o "__sleep", referenced from: _main in conftest.o "__snprintf", referenced from: _main in conftest.o "_fpresetsticky", referenced from: _main in conftest.o "_fpsetsticky", referenced from: _main in conftest.o "_memalign", referenced from: _main in conftest.o "_sbreak", referenced from: _main in conftest.o "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [rand getdomainname realpath dlsym bzero getwd uname usleep dlclose gethostname clock] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c:17:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c:17:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char getwd(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_GETWD" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Checking for functions [dlerror fork getpagesize gethostbyname readlink strcasecmp dlopen drand48 socket popen getrusage time] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c:18:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c:18:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlerror(); char fork(); char getpagesize(); char gethostbyname(); char readlink(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char popen(); char getrusage(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_DLERROR" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_access] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [snprintf] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c:13:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c:13:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [_pipe] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__pipe", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__pipe", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__pipe", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [_lseek] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [sleep] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_sleep] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [lseek] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [sbreak] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [memalign] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [getcwd] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__set_output_format", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__set_output_format", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__set_output_format", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [PXFGETARG] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [fpresetsticky] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_fpresetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_fpresetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_fpresetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [_mkdir] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__mkdir", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__mkdir", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__mkdir", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [fpsetsticky] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_fpsetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_fpsetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_fpsetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [stricmp] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 18.655735 ============================================================================================= TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize/conftest.c:38:18: warning: implicit declaration of function 'getpagesize' is invalid in C99 [-Wimplicit-function-declaration] f2 = getpagesize() * ((double)(temp2.ru_maxrss-temp1.ru_maxrss))/(4.0*ARRAYSIZE); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize/conftest.c:59:1: error: expected '}' ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize/conftest.c:12:12: note: to match this '{' int main() { ^ 1 warning and 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include #include #include #include int main() { #define ARRAYSIZE 10000000 int i,*m; struct rusage temp1,temp2; double f0,f1,f2; if (getrusage(RUSAGE_SELF,&temp1)) { printf("Error calling getrusage()\n"); return -1; } m = malloc(ARRAYSIZE*sizeof(int)); if (!m) { printf("Error calling malloc()\n"); return -3; } for (i=0; i .90 && f0 < 1.1) { printf("uses bytes in getrusage()\n"); return 1; if (f1 > .90 && f1 < 1.1) { printf("uses 1024 size chunks in getrusage()\n"); return 2; } else if (f2 > .9 && f2 < 1.1) { printf("uses getpagesize() chunks in getrusage()\n"); return 3; } printf("unable to determine if uses bytes, 1024 or getpagesize() chunks in getrusage()\n"); return -2;; return 0; } Compile failed inside link output from getrusage() child config.utilities.getResidentSetSize 0.358905 child config.utilities.fortranCommandLine 0.000011 ============================================================================================= TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated.: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated.: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/confdefs.h" 1 # 2 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 # 1 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conffix.h" 1 # 3 "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c" 2 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated.: child config.utilities.FPTrap 0.369572 ============================================================================================= TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros/conftest.c:4:10: fatal error: 'sysctl.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros/conftest.c:7:1: error: use of undeclared identifier 'cpu_set_t' cpu_set_t mset; ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros/conftest.c:8:1: warning: implicit declaration of function 'CPU_ZERO' is invalid in C99 [-Wimplicit-function-declaration] CPU_ZERO(&mset);; ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros/conftest.c:8:11: error: use of undeclared identifier 'mset' CPU_ZERO(&mset);; ^ 1 warning and 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info)) return 0;; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 1.641952 ============================================================================================= TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:6:9: warning: unused variable 'foo' [-Wunused-variable] u_short foo; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ============================================================================================= TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ============================================================================================= TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ============================================================================================= TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c:25:7: warning: incompatible pointer types initializing 'int (*)(char *, size_t)' (aka 'int (*)(char *, unsigned long)') with an expression of type 'int (char *, int)' [-Wincompatible-pointer-types] int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ ~~~~~~~~~~~~~ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC -std=gnu++17 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.cc:25:7: error: cannot initialize a variable of type 'int (*)(char *, size_t)' (aka 'int (*)(char *, unsigned long)') with an lvalue of type 'int (char *, int)': type mismatch at 2nd parameter ('size_t' (aka 'unsigned long') vs 'int') int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ ~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Compile failed inside link ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC -std=gnu++17 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,int) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -lc++ -ldl ============================================================================================= TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC -std=gnu++17 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing/conftest.o -lc++ -ldl child config.utilities.missing 9.950904 ============================================================================================= TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:34) ============================================================================================= TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:49) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Defined make rule "shared_arch" with dependencies "shared_darwin" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).$(2).dylib" Defined make macro "SL_LINKER_FUNCTION" to "-dynamiclib -install_name $(call SONAME_FUNCTION,$(1),$(2)) -compatibility_version $(2) -current_version $(3) -single_module -multiply_defined suppress -undefined dynamic_lookup" Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ============================================================================================= TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:93) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ============================================================================================= TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:99) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ============================================================================================= TESTING: checkSymbolResolution from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:108) Checks that dladdr() works ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info)) return 0; ; return 0; } Defined "HAVE_DLADDR" to "1" Checking for header: cxxabi.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_CXXABI_H" to "1" child PETSc.options.sharedLibraries 0.530951 ============================================================================================= TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:39) Choose between real and complex numbers Scalar type is real ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISNORMAL" to "1" ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISNAN" to "1" ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISINF" to "1" ============================================================================================= TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:80) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c:4:10: fatal error: 'quadmath.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 2.528321 ============================================================================================= TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /PETSc3/cig/bin/mkdir...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/mkdir...not found Checking for program /PETSc3/petsc/apple/bin/mkdir...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/mkdir...not found Checking for program /opt/local/bin/mkdir...not found Checking for program /opt/local/sbin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /bin/mkdir...found Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ============================================================================================= TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /PETSc3/cig/bin/autoreconf...found Executing: ['/PETSc3/cig/bin/autoreconf'] autoreconf test successful! Checking for program /PETSc3/cig/bin/libtoolize...found ============================================================================================= TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /PETSc3/cig/bin/bash...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/bash...not found Checking for program /PETSc3/petsc/apple/bin/bash...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/bash...not found Checking for program /opt/local/bin/bash...not found Checking for program /opt/local/sbin/bash...not found Checking for program /usr/local/bin/bash...not found Checking for program /usr/bin/bash...not found Checking for program /bin/bash...found Defined make macro "SHELL" to "/bin/bash" Checking for program /PETSc3/cig/bin/sed...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/sed...not found Checking for program /PETSc3/petsc/apple/bin/sed...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/sed...not found Checking for program /opt/local/bin/sed...not found Checking for program /opt/local/sbin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Executing: /usr/bin/sed -i s/sed/sd/g "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.programs/sed1" Rejected SEDINPLACE cmd: /usr/bin/sed -i Executing: /usr/bin/sed -i "" s/sed/sd/g "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i "" Defined make macro "SEDINPLACE" to "/usr/bin/sed -i """ Checking for program /PETSc3/cig/bin/mv...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/mv...not found Checking for program /PETSc3/petsc/apple/bin/mv...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/mv...not found Checking for program /opt/local/bin/mv...not found Checking for program /opt/local/sbin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /PETSc3/cig/bin/cp...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/cp...not found Checking for program /PETSc3/petsc/apple/bin/cp...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/cp...not found Checking for program /opt/local/bin/cp...not found Checking for program /opt/local/sbin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /PETSc3/cig/bin/grep...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/grep...not found Checking for program /PETSc3/petsc/apple/bin/grep...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/grep...not found Checking for program /opt/local/bin/grep...not found Checking for program /opt/local/sbin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /PETSc3/cig/bin/rm...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/rm...not found Checking for program /PETSc3/petsc/apple/bin/rm...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/rm...not found Checking for program /opt/local/bin/rm...not found Checking for program /opt/local/sbin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /PETSc3/cig/bin/diff...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/diff...not found Checking for program /PETSc3/petsc/apple/bin/diff...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/diff...not found Checking for program /opt/local/bin/diff...not found Checking for program /opt/local/sbin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.programs/diff1" "/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /PETSc3/petsc/petsc-pylith/lib/petsc/bin/win32fe/ps...not found Unable to find programs: ['ps'] in listing of the specific search path: ['/usr/ucb', '/usr/usb'] Warning accessing /usr/ucb gives errors: [Errno 2] No such file or directory: '/usr/ucb' Warning accessing /usr/usb gives errors: [Errno 2] No such file or directory: '/usr/usb' Defined make macro "PYTHON" to "/System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python" Checking for program /PETSc3/cig/bin/m4...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/m4...not found Checking for program /PETSc3/petsc/apple/bin/m4...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/m4...not found Checking for program /opt/local/bin/m4...not found Checking for program /opt/local/sbin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 2.598720 ============================================================================================= TESTING: consistencyChecks from config.packages.make(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.make(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default ============================================================================================= TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:96) Check Guesses for GNU make Executing: gmake --version GNUMake check failed: Could not execute "['gmake --version']": /bin/sh: gmake: command not found Executing: make --version stdout: GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for i386-apple-darwin11.3.0 Checking for program /PETSc3/cig/bin/make...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/make...not found Checking for program /PETSc3/petsc/apple/bin/make...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/make...not found Checking for program /opt/local/bin/make...not found Checking for program /opt/local/sbin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" Checking for program /PETSc3/cig/bin/make...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/make...not found Checking for program /PETSc3/petsc/apple/bin/make...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/make...not found Checking for program /opt/local/bin/make...not found Checking for program /opt/local/sbin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE_USER" to "make" ============================================================================================= ***** WARNING: You have a version of GNU make older than 4.0. It will work, but may not support all the parallel testing options. You can install the latest GNU make with your package manager, such as brew or macports, or use the --download-make option to get the latest GNU make ***** ============================================================================================= ============================================================================================= TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:150) Setup other GNU make stuff Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ============================================================================================= TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:197) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 16 cores: using make_np = 13 Defined make macro "MAKE_NP" to "13" Defined make macro "MAKE_TEST_NP" to "8" Defined make macro "MAKE_LOAD" to "24.0" Defined make macro "NPMAX" to "16" child config.packages.make 0.133535 ============================================================================================= TESTING: consistencyChecks from config.packages.hip(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hip(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.hip 0.001001 ============================================================================================= TESTING: consistencyChecks from config.packages.X(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.X(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.X(config/BuildSystem/config/package.py:930) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Compiler specific search X: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library [] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_XSetWMName", referenced from: __check_XSetWMName in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_XSetWMName", referenced from: __check_XSetWMName in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_XSetWMName", referenced from: __check_XSetWMName in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for library in Compiler specific search X: ['libX11.a'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['libX11.a'] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lX11 -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lX11 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lX11 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lX11 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for library in Package specific search directory X: ['/opt/X11/lib/libX11.a'] Contents of /opt/X11: ['bin', 'libexec', 'include', 'etc', 'var', 'lib', 'share'] Contents /opt/X11/lib: ['libglut.dylib', 'libxcb-xinput.dylib', 'libXi.6.dylib', 'libXaw3d.8.dylib', 'libxcb.1.dylib', 'libXtst.6.dylib', 'libXinerama.dylib', 'libxcb-image.0.dylib', 'libxcb-dpms.0.dylib', 'libXcomposite.1.dylib', 'libXfont2.dylib', 'libGLESv1_CM.1.dylib', 'libGL.dylib', 'libXfont.dylib', 'libxcb-shm.0.dylib', 'libfreetype.dylib', 'libfontenc.dylib', 'libXss.dylib', 'pkgconfig', 'libICE.dylib', 'libxcb-res.dylib', 'libxcb-xv.dylib', 'libGLESv1_CM.dylib', 'libxcb-util.1.dylib', 'libfontconfig.dylib', 'libXaw7.7.dylib', 'libXt.6.dylib', 'libxcb-dri2.dylib', 'libXinerama.1.dylib', 'flat_namespace', 'libxcb-util.dylib', 'libcairo.2.dylib', 'libxcb-shape.dylib', 'libxcb-sync.1.dylib', 'libxcb-screensaver.0.dylib', 'libXxf86vm.dylib', 'libxcb-present.dylib', 'libxcb-xtest.dylib', 'libxcb-xf86dri.dylib', 'libXss.1.dylib', 'libXv.1.dylib', 'libX11.dylib', 'libXxf86misc.1.dylib', 'libxcb-keysyms.dylib', 'libxcb-damage.dylib', 'libXaw6.6.dylib', 'libxcb-cursor.dylib', 'libxcb-record.dylib', 'libSM.dylib', 'libICE.6.dylib', 'libXrender.1.dylib', 'libxcb-dpms.dylib', 'libxcb-render.dylib', 'libxcb-ewmh.2.dylib', 'libX11.6.dylib', 'libxcb-errors.dylib', 'libxcb-screensaver.dylib', 'libxshmfence.1.dylib', 'libXRes.1.dylib', 'libpng16.16.dylib', 'libXvMCW.dylib', 'xorg', 'libAppleWM.7.dylib', 'libxcb-res.0.dylib', 'libAppleWM.dylib', 'libXRes.dylib', 'libpixman-1.dylib', 'libXmuu.dylib', 'libglapi.0.dylib', 'libcairo.dylib', 'libxkbui.1.dylib', 'libxcb-glx.dylib', 'libXau.dylib', 'libpng.3.dylib', 'libXdmcp.dylib', 'libxcb-randr.0.dylib', 'libfreetype.6.dylib', 'libxcb-record.0.dylib', 'libOSMesa.dylib', 'libXmu.dylib', 'libXcursor.1.dylib', 'libcairo-script-interpreter.dylib', 'libXmuu.1.dylib', 'libXfontcache.1.dylib', 'libxcb-errors.0.dylib', 'libXvMC.dylib', 'libXaw.dylib', 'libxkbfile.1.dylib', 'libpng.dylib', 'libxcb-dri3.dylib', 'libxcb-damage.0.dylib', 'libxcb-xkb.1.dylib', 'libxcb-xfixes.0.dylib', 'libXt.7.dylib', 'dri', 'libXv.dylib', 'libglapi.dylib', 'libxcb-glx.0.dylib', 'libxcb-render-util.dylib', 'libxcb-xvmc.0.dylib', 'libXfixes.3.dylib', 'libxcb-shape.0.dylib', 'libxcb-keysyms.1.dylib', 'libOSMesa.8.dylib', 'libxcb-render.0.dylib', 'libxcb-dri2.0.dylib', 'libFS.6.dylib', 'libcairo-script-interpreter.2.dylib', 'libXpresent.dylib', 'libXTrap.6.dylib', 'libXpm.4.dylib', 'libxcb-randr.dylib', 'libX11-xcb.1.dylib', 'libXt.dylib', 'libXaw3d.dylib', 'libXaw.7.dylib', 'libxcb.dylib', 'libxcb-xinerama.dylib', 'libXdmcp.6.dylib', 'libfontconfig.1.dylib', 'libXaw7.dylib', 'libXcomposite.dylib', 'libXfont.1.dylib', 'libXau.6.dylib', 'libpng15.15.dylib', 'libXvMC.1.dylib', 'libGLESv2.2.dylib', 'libxcb-cursor.0.dylib', 'libxcb-icccm.4.dylib', 'libXrender.dylib', 'libXfixes.dylib', 'libglut.3.dylib', 'libXext.dylib', 'libXevie.1.dylib', 'libxcb-render-util.0.dylib', 'libXext.6.dylib', 'libGLU.dylib', 'libXxf86vm.1.dylib', 'libxcb-xkb.dylib', 'libXi.dylib', 'libGL.1.dylib', 'libXtst.dylib', 'X11', 'libXcursor.dylib', 'libXdamage.1.dylib', 'libFS.dylib', 'libxcb-dri3.0.dylib', 'libXdamage.dylib', 'python2.7', 'libGLESv2.dylib', 'libxcb-composite.0.dylib', 'libpng12.0.dylib', 'libXrandr.dylib', 'libXft.2.dylib', 'libXaw.6.dylib', 'libpng16.dylib', 'libxcb-xtest.0.dylib', 'libxcb-xfixes.dylib', 'libdmx.1.dylib', 'libxcb-xinput.0.dylib', 'libxshmfence.dylib', 'libxcb-xf86dri.0.dylib', 'libxcb-ewmh.dylib', 'libdmx.dylib', 'libSM.6.dylib', 'libpixman-1.0.dylib', 'libxcb-image.dylib', 'libxkbfile.dylib', 'libXmu.6.dylib', 'libXrandr.2.dylib', 'libGLU.1.dylib', 'libxcb-icccm.dylib', 'libxcb-composite.dylib', 'libXpm.dylib', 'libxcb-shm.dylib', 'libxcb-present.0.dylib', 'libXp.6.dylib', 'libfontenc.1.dylib', 'libxcb-sync.dylib', 'libxcb-xvmc.dylib', 'libxcb-xinerama.0.dylib', 'libXvMCW.1.dylib', 'libXpresent.1.dylib', 'libXaw6.dylib', 'libXfont2.2.dylib', 'libxcb-xv.0.dylib', 'libpng14.14.dylib', 'libXft.dylib', 'libX11-xcb.dylib'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['/opt/X11/lib/libX11.a'] [] Checking directory of requested libraries:/opt/X11/lib for first library:libX11. Files in directory:['libglut.dylib', 'libxcb-xinput.dylib', 'libXi.6.dylib', 'libXaw3d.8.dylib', 'libxcb.1.dylib', 'libXtst.6.dylib', 'libXinerama.dylib', 'libxcb-image.0.dylib', 'libxcb-dpms.0.dylib', 'libXcomposite.1.dylib', 'libXfont2.dylib', 'libGLESv1_CM.1.dylib', 'libGL.dylib', 'libXfont.dylib', 'libxcb-shm.0.dylib', 'libfreetype.dylib', 'libfontenc.dylib', 'libXss.dylib', 'pkgconfig', 'libICE.dylib', 'libxcb-res.dylib', 'libxcb-xv.dylib', 'libGLESv1_CM.dylib', 'libxcb-util.1.dylib', 'libfontconfig.dylib', 'libXaw7.7.dylib', 'libXt.6.dylib', 'libxcb-dri2.dylib', 'libXinerama.1.dylib', 'flat_namespace', 'libxcb-util.dylib', 'libcairo.2.dylib', 'libxcb-shape.dylib', 'libxcb-sync.1.dylib', 'libxcb-screensaver.0.dylib', 'libXxf86vm.dylib', 'libxcb-present.dylib', 'libxcb-xtest.dylib', 'libxcb-xf86dri.dylib', 'libXss.1.dylib', 'libXv.1.dylib', 'libX11.dylib', 'libXxf86misc.1.dylib', 'libxcb-keysyms.dylib', 'libxcb-damage.dylib', 'libXaw6.6.dylib', 'libxcb-cursor.dylib', 'libxcb-record.dylib', 'libSM.dylib', 'libICE.6.dylib', 'libXrender.1.dylib', 'libxcb-dpms.dylib', 'libxcb-render.dylib', 'libxcb-ewmh.2.dylib', 'libX11.6.dylib', 'libxcb-errors.dylib', 'libxcb-screensaver.dylib', 'libxshmfence.1.dylib', 'libXRes.1.dylib', 'libpng16.16.dylib', 'libXvMCW.dylib', 'xorg', 'libAppleWM.7.dylib', 'libxcb-res.0.dylib', 'libAppleWM.dylib', 'libXRes.dylib', 'libpixman-1.dylib', 'libXmuu.dylib', 'libglapi.0.dylib', 'libcairo.dylib', 'libxkbui.1.dylib', 'libxcb-glx.dylib', 'libXau.dylib', 'libpng.3.dylib', 'libXdmcp.dylib', 'libxcb-randr.0.dylib', 'libfreetype.6.dylib', 'libxcb-record.0.dylib', 'libOSMesa.dylib', 'libXmu.dylib', 'libXcursor.1.dylib', 'libcairo-script-interpreter.dylib', 'libXmuu.1.dylib', 'libXfontcache.1.dylib', 'libxcb-errors.0.dylib', 'libXvMC.dylib', 'libXaw.dylib', 'libxkbfile.1.dylib', 'libpng.dylib', 'libxcb-dri3.dylib', 'libxcb-damage.0.dylib', 'libxcb-xkb.1.dylib', 'libxcb-xfixes.0.dylib', 'libXt.7.dylib', 'dri', 'libXv.dylib', 'libglapi.dylib', 'libxcb-glx.0.dylib', 'libxcb-render-util.dylib', 'libxcb-xvmc.0.dylib', 'libXfixes.3.dylib', 'libxcb-shape.0.dylib', 'libxcb-keysyms.1.dylib', 'libOSMesa.8.dylib', 'libxcb-render.0.dylib', 'libxcb-dri2.0.dylib', 'libFS.6.dylib', 'libcairo-script-interpreter.2.dylib', 'libXpresent.dylib', 'libXTrap.6.dylib', 'libXpm.4.dylib', 'libxcb-randr.dylib', 'libX11-xcb.1.dylib', 'libXt.dylib', 'libXaw3d.dylib', 'libXaw.7.dylib', 'libxcb.dylib', 'libxcb-xinerama.dylib', 'libXdmcp.6.dylib', 'libfontconfig.1.dylib', 'libXaw7.dylib', 'libXcomposite.dylib', 'libXfont.1.dylib', 'libXau.6.dylib', 'libpng15.15.dylib', 'libXvMC.1.dylib', 'libGLESv2.2.dylib', 'libxcb-cursor.0.dylib', 'libxcb-icccm.4.dylib', 'libXrender.dylib', 'libXfixes.dylib', 'libglut.3.dylib', 'libXext.dylib', 'libXevie.1.dylib', 'libxcb-render-util.0.dylib', 'libXext.6.dylib', 'libGLU.dylib', 'libXxf86vm.1.dylib', 'libxcb-xkb.dylib', 'libXi.dylib', 'libGL.1.dylib', 'libXtst.dylib', 'X11', 'libXcursor.dylib', 'libXdamage.1.dylib', 'libFS.dylib', 'libxcb-dri3.0.dylib', 'libXdamage.dylib', 'python2.7', 'libGLESv2.dylib', 'libxcb-composite.0.dylib', 'libpng12.0.dylib', 'libXrandr.dylib', 'libXft.2.dylib', 'libXaw.6.dylib', 'libpng16.dylib', 'libxcb-xtest.0.dylib', 'libxcb-xfixes.dylib', 'libdmx.1.dylib', 'libxcb-xinput.0.dylib', 'libxshmfence.dylib', 'libxcb-xf86dri.0.dylib', 'libxcb-ewmh.dylib', 'libdmx.dylib', 'libSM.6.dylib', 'libpixman-1.0.dylib', 'libxcb-image.dylib', 'libxkbfile.dylib', 'libXmu.6.dylib', 'libXrandr.2.dylib', 'libGLU.1.dylib', 'libxcb-icccm.dylib', 'libxcb-composite.dylib', 'libXpm.dylib', 'libxcb-shm.dylib', 'libxcb-present.0.dylib', 'libXp.6.dylib', 'libfontenc.1.dylib', 'libxcb-sync.dylib', 'libxcb-xvmc.dylib', 'libxcb-xinerama.0.dylib', 'libXvMCW.1.dylib', 'libXpresent.1.dylib', 'libXaw6.dylib', 'libXfont2.2.dylib', 'libxcb-xv.0.dylib', 'libpng14.14.dylib', 'libXft.dylib', 'libX11-xcb.dylib'] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11 -lc++ -ldl Checking for optional headers [] in Package specific search directory X: ['/opt/X11/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/opt/X11/include'] Found header files [] in ['/opt/X11/include'] Checking for headers ['X11/Xlib.h'] in Package specific search directory X: ['/opt/X11/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['X11/Xlib.h'] in ['/opt/X11/include'] Checking include with compiler flags var CPPFLAGS ['/opt/X11/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/opt/X11/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['X11/Xlib.h'] in ['/opt/X11/include'] ============================================================================================= TESTING: checkVersion from config.packages.X(config/BuildSystem/config/package.py:1071) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version For x unable to run preprocessor to obtain version information, skipping version check ============================================================================================= TESTING: checkSharedLibrary from config.packages.X(config/BuildSystem/config/package.py:996) By default we don't care about checking if the library is shared child config.packages.X 1.946181 ============================================================================================= TESTING: consistencyChecks from config.packages.hwloc(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.hwloc 0.001879 ============================================================================================= TESTING: consistencyChecks from config.packages.thrust(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.thrust 0.001053 ============================================================================================= TESTING: consistencyChecks from config.packages.cuda(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.cuda 0.000911 ============================================================================================= TESTING: consistencyChecks from config.packages.OpenMPI(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.000997 ============================================================================================= TESTING: consistencyChecks from config.packages.MPICH(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.001512 ============================================================================================= TESTING: consistencyChecks from config.packages.MPI(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:785) ================================================================================== Checking for a functional MPI Checking for library in User specified root directory MPI: [] Contents of /PETSc3/petsc/apple: ['bin', 'include', 'lib', 'doc', 'share'] Contents /PETSc3/petsc/apple/: ['bin', 'include', 'lib', 'doc', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lc++ -ldl Checking for optional headers [] in User specified root directory MPI: ['/PETSc3/petsc/apple/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/PETSc3/petsc/apple/include'] Found header files [] in ['/PETSc3/petsc/apple/include'] Checking for headers ['mpi.h'] in User specified root directory MPI: ['/PETSc3/petsc/apple/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/PETSc3/petsc/apple/include'] Checking include with compiler flags var CPPFLAGS ['/PETSc3/petsc/apple/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['mpi.h'] in ['/PETSc3/petsc/apple/include'] Defined "HAVE_MPI_F90MODULE_VISIBILITY" to "1" ============================================================================================= TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:602) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:4:25: error: use of undeclared identifier 'I_MPI_VERSION' const char *mpich_ver = I_MPI_VERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'I_MPI_NUMVERSION' int mpich_ver = I_MPI_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'MVAPICH2_NUMVERSION' int mpich_ver = MVAPICH2_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Defined "HAVE_MPICH_NUMVERSION" to "30300101" Executing: uname -s stdout: Darwin ============================================================================================= TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:379) Check for functions added to the interface in MPI-2 ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:35: warning: if statement has empty body [-Wempty-body] int flag;if (MPI_Finalized(&flag)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:35: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:71: warning: if statement has empty body [-Wempty-body] if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:71: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:7:121: warning: if statement has empty body [-Wempty-body] if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:7:121: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={MPI_INT,MPI_DOUBLE}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -lc++ -ldl ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:131: warning: if statement has empty body [-Wempty-body] MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:131: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -lc++ -ldl ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:63: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:63: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -lc++ -ldl ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:49: warning: if statement has empty body [-Wempty-body] if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:49: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:102: warning: if statement has empty body [-Wempty-body] char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:102: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:90: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:90: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:85: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ^~~ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ^ = 0 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_ONE_SIDED" to "1" ============================================================================================= TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:426) Check for functions added to the interface in MPI-3 ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:7:112: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:7:112: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:8:111: warning: if statement has empty body [-Wempty-body] if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:8:111: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:9:82: warning: if statement has empty body [-Wempty-body] if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:9:82: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:7:104: warning: if statement has empty body [-Wempty-body] if (MPI_Win_allocate(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:7:104: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:8:61: warning: if statement has empty body [-Wempty-body] if (MPI_Win_attach(win,baseptr,size)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:8:61: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:9:86: warning: if statement has empty body [-Wempty-body] if (MPI_Win_create_dynamic(MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:9:86: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Win_allocate(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_attach(win,baseptr,size)); if (MPI_Win_create_dynamic(MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_FEATURE_DYNAMIC_WINDOW" to "1" ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:7:96: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:7:96: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:8:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:8:110: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:9:96: warning: if statement has empty body [-Wempty-body] if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:9:96: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:10:109: warning: if statement has empty body [-Wempty-body] if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:10:109: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:11:97: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:11:97: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:12:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:12:110: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:13:96: warning: if statement has empty body [-Wempty-body] if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:13:96: note: put the semicolon on a separate line to silence this warning 7 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:8:145: warning: if statement has empty body [-Wempty-body] if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:8:145: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:9:89: warning: if statement has empty body [-Wempty-body] if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:9:89: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:10:95: warning: if statement has empty body [-Wempty-body] if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:10:95: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:104: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:104: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:99: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^~~ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ = 0 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:84: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^~~ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ = 0 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_RGET" to "1" ============================================================================================= TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:188) Checking for location of mpiexec Checking for program /PETSc3/petsc/apple/bin/mpiexec...found Checking for program /PETSc3/petsc/apple/bin/mpiexec...found Running Executable with threads to time it out at 120 Executing: /PETSc3/petsc/apple/bin/mpiexec -n 1 printenv stdout: BIBINPUTS=.:/PETSc3/papers/BarbaGroup/bibTex HDF5_DIR=/usr/local/hdf5 TERM_PROGRAM=atom-ide-terminal SHELL=/bin/bash TERM=xterm-256color PETSC_ARCH=arch-master-debug TMPDIR=/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/ USER=knepley SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.MUczxjE7PL/Listeners __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0 PATH=/PETSc3/cig/bin:/PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin:/PETSc3/petsc/apple/bin:/Library/Frameworks/Python.framework/Versions/3.8/bin:/opt/local/bin:/opt/local/sbin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/texbin:/opt/X11/bin:/usr/local/git/bin:/Library/Frameworks/Python.framework/Versions/3.8/bin:/opt/local/bin:/opt/local/sbin:/usr/X11/bin:/usr/local/texlive/2019/bin/x86_64-darwin:/usr/local/cuda/bin:/usr/local/gmt/bin:/usr/local/bin:/usr/X11/bin:/usr/local/texlive/2019/bin/x86_64-darwin:/usr/local/cuda/bin:/usr/local/gmt/bin VERSIONER_PYTHON_VERSION=2.7 _=/PETSc3/petsc/apple/bin/mpiexec PWD=/PETSc3/petsc/petsc-pylith LANG=en_US.UTF-8 XPC_FLAGS=0x0 HISTCONTROL=ignoreboth XPC_SERVICE_NAME=0 SHLVL=3 HOME=/Users/knepley DYLD_LIBRARY_PATH=:/usr/local/boost/lib:/usr/local/cuda/lib:/usr/local/boost/lib:/usr/local/cuda/lib SLEPC_DIR=/PETSc3/petsc/slepc-dev PYTHONPATH=/PETSc3/cig/lib/python3.8/site-packages::/usr/local/lib/python2.6/site-packages:/PETSc3/petsc/petsc-dev/arch-master-debug/lib:/PETSc3/petsc/petsc-dev/arch-master-debug/lib/python2.6/site-packages:/usr/local/lib/python2.6/site-packages:/PETSc3/petsc/petsc-dev/arch-master-debug/lib:/PETSc3/petsc/petsc-dev/arch-master-debug/lib/python2.6/site-packages MACOSX_DEPLOYMENT_TARGET=10.15 LOGNAME=knepley CIG_DIR=/PETSc3/cig PETSC_OPTIONS=-malloc_debug DISPLAY=/private/tmp/com.apple.launchd.SJt6rFWL2G/org.xquartz:0 CUDA_SDK_DIR=/PETSc3/multicore/NVIDIA_CUDA_SDK TAO_DIR=/PETSc3/fem/tao-lite PETSC_DIR=/PETSc3/petsc/petsc-pylith MPIEXEC=/PETSc3/petsc/apple/bin/mpiexec HYDI_CONTROL_FD=9 GFORTRAN_UNBUFFERED_PRECONNECTED=y MPIR_CVAR_CH3_INTERFACE_HOSTNAME=MacBook-Pro.fios-router.home MPI_LOCALNRANKS=1 MPI_LOCALRANKID=0 PMI_RANK=0 PMI_FD=8 PMI_SIZE=1 Defined "HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE" to "MPIR_CVAR_CH3" Defined make macro "MPIEXEC" to "/PETSc3/petsc/apple/bin/mpiexec" Checking for program /usr/libexec/ApplicationFirewall/socketfilterfw...found Defined make macro "SOCKETFILTERFW" to "/usr/libexec/ApplicationFirewall/socketfilterfw" Running Executable with threads to time it out at 60 Executing: /usr/libexec/ApplicationFirewall/socketfilterfw --getglobalstate stdout: Firewall is disabled. (State = 0) Checking for program /PETSc3/cig/bin/hostname...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/hostname...not found Checking for program /PETSc3/petsc/apple/bin/hostname...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/hostname...not found Checking for program /opt/local/bin/hostname...not found Checking for program /opt/local/sbin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/bin/hostname...not found Checking for program /bin/hostname...found Defined make macro "HOSTNAME" to "hostname" Running Executable with threads to time it out at 60 Executing: hostname stdout: MacBook-Pro.fios-router.home Return code from hostname: 0 Hostname works, running network checks Checking for program /sbin/ping...found Defined make macro "PING" to "/sbin/ping" Executing: uname -s stdout: Darwin Running Executable with threads to time it out at 60 Executing: /sbin/ping -c 2 MacBook-Pro.fios-router.home stdout: PING macbook-pro.fios-router.home (192.168.1.222): 56 data bytes 64 bytes from 192.168.1.222: icmp_seq=0 ttl=64 time=0.109 ms 64 bytes from 192.168.1.222: icmp_seq=1 ttl=64 time=0.099 ms --- macbook-pro.fios-router.home ping statistics --- 2 packets transmitted, 2 packets received, 0.0% packet loss round-trip min/avg/max/stddev = 0.099/0.104/0.109/0.005 ms Return code from ping: 0 ============================================================================================= ======== Checking running linked program ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -lc++ -ldl Testing executable /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest to see if it can be run Executing: /PETSc3/petsc/apple/bin/mpiexec -n 1 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest Running Executable with threads to time it out at 120 Executing: /PETSc3/petsc/apple/bin/mpiexec -n 1 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest ============================================================================================= TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:483) Checking for MPI Datatype handles ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_LONG_DOUBLE" to "1" ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_INT64_T" to "1" ============================================================================================= TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:530) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_MPI_SGI_barrier", referenced from: __check_MPI_SGI_barrier in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_MPI_SGI_barrier", referenced from: __check_MPI_SGI_barrier in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_MPI_SGI_barrier", referenced from: __check_MPI_SGI_barrier in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): SGI MPI test failure ============================================================================================= TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:540) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC -std=gnu++17 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lc++ -ldl ============================================================================================= TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:556) Make sure fortran include [mpif.h] and library symbols are found ============================================================================================= TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:578) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:7:48: warning: if statement has empty body [-Wempty-body] if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:7:48: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:12:54: warning: if statement has empty body [-Wempty-body] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:12:54: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:14:102: warning: if statement has empty body [-Wempty-body] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:14:102: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:18:61: warning: if statement has empty body [-Wempty-body] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:18:61: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:20:101: warning: if statement has empty body [-Wempty-body] if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:20:101: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:22:74: warning: if statement has empty body [-Wempty-body] if (MPI_File_close(&fh)); ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:22:74: note: put the semicolon on a separate line to silence this warning /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:18:55: warning: variable 'info' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:17:14: note: initialize the variable 'info' to silence this warning MPI_Info info; ^ = 0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:12:24: warning: variable 'fh' is uninitialized when used here [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^~ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:9:61: note: initialize the variable 'fh' to silence this warning MPI_File fh; ^ = 0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:18:27: warning: variable 'disp' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:16:65: note: initialize the variable 'disp' to silence this warning MPI_Offset disp; ^ = 0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:14:76: warning: variable 'buf' is uninitialized when used here [-Wuninitialized] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^~~ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:10:10: note: initialize the variable 'buf' to silence this warning void *buf; ^ = 0 10 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPIIO" to "1" ============================================================================================= TESTING: findMPIIncludeAndLib from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:690) Find MPI include paths and libraries from "mpicc -show" or Cray "cc --cray-print-opts=cflags/libs" and save. ============================================================================================= TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:760) Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lc++ -ldl Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_DUP;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_CONTIGUOUS;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_NAMED;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ============================================================================================= TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:1071) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" petscpkgver(MPI_VERSION); Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:996) By default we don't care about checking if the library is shared child config.packages.MPI 19.237996 ============================================================================================= TESTING: consistencyChecks from config.packages.zstd(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.001327 ============================================================================================= TESTING: consistencyChecks from config.packages.yaml(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.001042 ============================================================================================= TESTING: consistencyChecks from config.packages.sycl(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sycl(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.sycl 0.000834 ============================================================================================= TESTING: consistencyChecks from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:31) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.001862 ============================================================================================= TESTING: consistencyChecks from config.packages.sprng(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.001018 Not a clone of PETSc or no Fortran compiler or fortran-bindings disabled, don't need Sowing child config.packages.sowing 0.000545 ============================================================================================= TESTING: consistencyChecks from config.packages.revolve(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.000973 ============================================================================================= TESTING: consistencyChecks from config.packages.radau5(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.000929 ============================================================================================= TESTING: consistencyChecks from config.packages.pami(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.000825 ============================================================================================= TESTING: consistencyChecks from config.packages.opengles(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.000859 ============================================================================================= TESTING: consistencyChecks from config.packages.opencl(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.001106 ============================================================================================= TESTING: consistencyChecks from config.packages.muparser(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.000925 ============================================================================================= TESTING: consistencyChecks from config.packages.mpe(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.003612 ============================================================================================= TESTING: consistencyChecks from config.packages.memkind(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.000902 ============================================================================================= TESTING: consistencyChecks from config.packages.libmesh(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:69) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.001236 ============================================================================================= TESTING: consistencyChecks from config.packages.moose(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.000816 ============================================================================================= TESTING: consistencyChecks from config.packages.libjpeg(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.000837 Checking for program /PETSc3/cig/bin/lgrind...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/lgrind...not found Checking for program /PETSc3/petsc/apple/bin/lgrind...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/lgrind...not found Checking for program /opt/local/bin/lgrind...not found Checking for program /opt/local/sbin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /bin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /sbin/lgrind...not found Checking for program /usr/texbin/lgrind...not found Checking for program /opt/X11/bin/lgrind...not found Checking for program /usr/local/git/bin/lgrind...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/lgrind...not found Checking for program /opt/local/bin/lgrind...not found Checking for program /opt/local/sbin/lgrind...not found Checking for program /usr/X11/bin/lgrind...not found Checking for program /usr/local/texlive/2019/bin/x86_64-darwin/lgrind...not found Checking for program /usr/local/cuda/bin/lgrind...not found Checking for program /usr/local/gmt/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/X11/bin/lgrind...not found Checking for program /usr/local/texlive/2019/bin/x86_64-darwin/lgrind...not found Checking for program /usr/local/cuda/bin/lgrind...not found Checking for program /usr/local/gmt/bin/lgrind...not found Checking for program /PETSc3/petsc/petsc-pylith/lib/petsc/bin/win32fe/lgrind...not found child config.packages.lgrind 0.008075 ============================================================================================= TESTING: consistencyChecks from config.packages.gsl(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.gsl(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.gsl 0.001030 child config.packages.gmsh 0.000171 ============================================================================================= TESTING: consistencyChecks from config.packages.gmp(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.001018 ============================================================================================= TESTING: consistencyChecks from config.packages.mpfr(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.001021 ============================================================================================= TESTING: consistencyChecks from config.packages.giflib(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.001031 ============================================================================================= TESTING: consistencyChecks from config.packages.cub(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cub(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.cub 0.001018 ============================================================================================= TESTING: consistencyChecks from config.packages.ctetgen(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.ctetgen(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.ctetgen(config/BuildSystem/config/packages/ctetgen.py:24) Since ctetgen cannot be built until after PETSc configure is complete we need to just assume the downloaded library will work Looking for CTETGEN at git.ctetgen, hg.ctetgen or a directory starting with ['ctetgen', 'petsc-ctetgen'] Found a copy of CTETGEN in git.ctetgen Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'ctetgen-0.9^{commit}'] Executing: ['git', 'rev-parse', 'ctetgen-0.9'] stdout: d14ecd68b4372a10c717fefc37d3c3ff457c2871 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing ctetgen.o Removing libctetgen.a Removing pkg.gitcommit Removing predicates.o Executing: ['git', 'checkout', '-f', 'd14ecd68b4372a10c717fefc37d3c3ff457c2871'] ============================================================================================= TESTING: checkVersion from config.packages.ctetgen(config/BuildSystem/config/package.py:1071) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:996) By default we don't care about checking if the library is shared child config.packages.ctetgen 0.269494 ============================================================================================= TESTING: consistencyChecks from config.packages.concurrencykit(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.003256 ============================================================================================= TESTING: consistencyChecks from config.packages.cams(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cams(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.cams 0.002969 ============================================================================================= TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:30) Looking for default C2html executable Checking for program /PETSc3/cig/bin/c2html...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/c2html...not found Checking for program /PETSc3/petsc/apple/bin/c2html...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/c2html...not found Checking for program /opt/local/bin/c2html...not found Checking for program /opt/local/sbin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /sbin/c2html...not found Checking for program /usr/texbin/c2html...not found Checking for program /opt/X11/bin/c2html...not found Checking for program /usr/local/git/bin/c2html...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/c2html...not found Checking for program /opt/local/bin/c2html...not found Checking for program /opt/local/sbin/c2html...not found Checking for program /usr/X11/bin/c2html...not found Checking for program /usr/local/texlive/2019/bin/x86_64-darwin/c2html...not found Checking for program /usr/local/cuda/bin/c2html...not found Checking for program /usr/local/gmt/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/X11/bin/c2html...not found Checking for program /usr/local/texlive/2019/bin/x86_64-darwin/c2html...not found Checking for program /usr/local/cuda/bin/c2html...not found Checking for program /usr/local/gmt/bin/c2html...not found Checking for program /PETSc3/petsc/petsc-pylith/lib/petsc/bin/win32fe/c2html...not found child config.packages.c2html 0.005189 ============================================================================================= TESTING: consistencyChecks from config.packages.boost(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.003128 ============================================================================================= TESTING: consistencyChecks from config.packages.silo(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.002912 ============================================================================================= TESTING: consistencyChecks from config.packages.Random123(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.002934 ============================================================================================= TESTING: consistencyChecks from config.packages.PARTY(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.003173 ============================================================================================= TESTING: consistencyChecks from config.packages.NVSHMEM(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.NVSHMEM(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.NVSHMEM 0.001982 ============================================================================================= TESTING: consistencyChecks from config.packages.Matlab(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.002132 ============================================================================================= TESTING: consistencyChecks from config.packages.MatlabEngine(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.001085 ============================================================================================= TESTING: consistencyChecks from config.packages.Mathematica(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.001045 ============================================================================================= TESTING: consistencyChecks from config.packages.regex(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:930) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lc++ -ldl Checking for optional headers [] in Compiler specific search REGEX: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['regex.h'] in Compiler specific search REGEX: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['regex.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:1071) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:996) By default we don't care about checking if the library is shared child config.packages.regex 0.854027 ============================================================================================= TESTING: consistencyChecks from config.packages.libceed(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.001336 Defined "PYTHON_EXE" to ""/System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python"" Executing: /System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import Cython" Executing: /System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import numpy" child config.packages.python 0.152653 ============================================================================================= TESTING: consistencyChecks from config.packages.petsc4py(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:129) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] Defined make rule "petsc4pytest" with dependencies "" and code [] child config.packages.petsc4py 0.001957 ============================================================================================= TESTING: consistencyChecks from config.packages.mpi4py(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.mpi4py 0.001095 ============================================================================================= TESTING: consistencyChecks from config.packages.slepc(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:95) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.001676 ============================================================================================= TESTING: consistencyChecks from config.packages.opengl(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.001019 ============================================================================================= TESTING: consistencyChecks from config.packages.glut(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.000963 ============================================================================================= TESTING: consistencyChecks from config.packages.GLVis(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.GLVis(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.GLVis 0.001103 ============================================================================================= TESTING: consistencyChecks from config.packages.CoDiPack(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.001039 ============================================================================================= TESTING: consistencyChecks from config.packages.adblaslapack(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.001137 child config.packages.cxxlibs 0.000017 ============================================================================================= TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:51) Looking for specified CMake executable /PETSc3/petsc/apple/bin/cmake Checking for program /PETSc3/petsc/apple/bin/cmake...found Defined make macro "CMAKE" to "/PETSc3/petsc/apple/bin/cmake" Looking for specified Ctest executable /PETSc3/petsc/apple/bin/ctest Checking for program /PETSc3/petsc/apple/bin/ctest...found Defined make macro "CTEST" to "/PETSc3/petsc/apple/bin/ctest" Executing: /PETSc3/petsc/apple/bin/cmake --version stdout: cmake version 3.20.1 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.20.1 child config.packages.cmake 0.069587 ============================================================================================= TESTING: consistencyChecks from config.packages.unittestcpp(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.001473 ============================================================================================= TESTING: consistencyChecks from config.packages.googletest(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.002890 ============================================================================================= TESTING: consistencyChecks from config.packages.opencascade(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.opencascade(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.opencascade(config/BuildSystem/config/package.py:930) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional opencascade Looking for OPENCASCADE at git.opencascade, hg.opencascade or a directory starting with ['opencascade'] Found a copy of OPENCASCADE in git.opencascade Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'f136d2a3ac89b3203affef1f04da6fde9d60bf7e^{commit}'] Executing: ['git', 'rev-parse', 'f136d2a3ac89b3203affef1f04da6fde9d60bf7e'] stdout: f136d2a3ac89b3203affef1f04da6fde9d60bf7e Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: Saved working directory and index state WIP on (no branch): f136d2a3a [OCE-PATCH] Fix private linkng of external libs in opencascade Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing opencascade.petscconf Removing petsc-build/ Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', 'f136d2a3ac89b3203affef1f04da6fde9d60bf7e'] Detected Darwin/MacOSX Catalina OS Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 500 Detected CLANG compiler Makefile /PETSc3/petsc/petsc-pylith/arch-master-debug/lib/petsc/conf/pkg.conf.opencascade has correct checksum Commit file /PETSc3/petsc/petsc-pylith/arch-master-debug/lib/petsc/conf/pkg.gitcommit.opencascade has correct checksum Do not need to rebuild OPENCASCADE Not checking for library in Download OPENCASCADE: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libTKXSBase.a', 'libTKSTEPBase.a', 'libTKSTEPAttr.a', 'libTKSTEP209.a', 'libTKSTEP.a', 'libTKIGES.a', 'libTKGeomAlgo.a', 'libTKTopAlgo.a', 'libTKPrim.a', 'libTKBO.a', 'libTKBool.a', 'libTKHLR.a', 'libTKFillet.a', 'libTKOffset.a', 'libTKFeat.a', 'libTKMesh.a', 'libTKXMesh.a', 'libTKShHealing.a', 'libTKG2d.a', 'libTKG3d.a', 'libTKGeomBase.a', 'libTKBRep.a', 'libTKernel.a', 'libTKMath.a'] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libTKXSBase.a', 'libTKSTEPBase.a', 'libTKSTEPAttr.a', 'libTKSTEP209.a', 'libTKSTEP.a', 'libTKIGES.a', 'libTKGeomAlgo.a', 'libTKTopAlgo.a', 'libTKPrim.a', 'libTKBO.a', 'libTKBool.a', 'libTKHLR.a', 'libTKFillet.a', 'libTKOffset.a', 'libTKFeat.a', 'libTKMesh.a', 'libTKXMesh.a', 'libTKShHealing.a', 'libTKG2d.a', 'libTKG3d.a', 'libTKGeomBase.a', 'libTKBRep.a', 'libTKernel.a', 'libTKMath.a'] [] Checking for optional headers [] in Download OPENCASCADE: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Found header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking for headers ['opencascade/Standard_Version.hxx'] in Download OPENCASCADE: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['opencascade/Standard_Version.hxx'] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking include with compiler flags var CXXPPFLAGS ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicxx -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.cc Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['opencascade/Standard_Version.hxx'] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkVersion from config.packages.opencascade(config/BuildSystem/config/package.py:1071) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "opencascade/Standard_Version.hxx" petscpkgver(OCC_VERSION_COMPLETE); Executing: /PETSc3/petsc/apple/bin/mpicxx -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.opencascade -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.opencascade/conftest.cc For opencascade need 7.5.0 <= 7.5.0 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.opencascade(config/BuildSystem/config/package.py:996) By default we don't care about checking if the library is shared child config.packages.opencascade 3.909319 ============================================================================================= TESTING: consistencyChecks from config.packages.eigen(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.001486 ============================================================================================= TESTING: consistencyChecks from config.packages.szlib(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.001070 ============================================================================================= TESTING: consistencyChecks from config.packages.zlib(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.zlib(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:930) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional zlib Checking for library in Compiler specific search ZLIB: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [compress uncompress] in library [] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } int main() { _check_compress(); _check_uncompress();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_compress", referenced from: __check_compress in conftest.o "_uncompress", referenced from: __check_uncompress in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_compress", referenced from: __check_compress in conftest.o "_uncompress", referenced from: __check_uncompress in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_compress", referenced from: __check_compress in conftest.o "_uncompress", referenced from: __check_uncompress in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation): Checking for library in Compiler specific search ZLIB: ['libz.a'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [compress uncompress] in library ['libz.a'] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } int main() { _check_compress(); _check_uncompress();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lz -lc++ -ldl Checking for optional headers [] in Compiler specific search ZLIB: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['zlib.h'] in Compiler specific search ZLIB: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['zlib.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['zlib.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.zlib(config/BuildSystem/config/package.py:1071) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "zlib.h" petscpkgver(ZLIB_VERSION); Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.zlib -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.zlib/conftest.c For zlib need <= 1.2.11 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.zlib(config/BuildSystem/config/package.py:996) By default we don't care about checking if the library is shared child config.packages.zlib 1.658038 child config.packages.mathlib 0.000047 ============================================================================================= TESTING: consistencyChecks from config.packages.tetgen(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.tetgen(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.tetgen(config/BuildSystem/config/packages/tetgen.py:82) ================================================================================== Checking for a functional tetgen Looking for TETGEN at git.tetgen, hg.tetgen or a directory starting with ['tetgen'] Found a copy of TETGEN in tetgen1.5.1 Detected Darwin/MacOSX Catalina OS Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 500 Detected CLANG compiler Makefile /PETSc3/petsc/petsc-pylith/arch-master-debug/lib/petsc/conf/pkg.conf.tetgen has correct checksum Do not need to rebuild TETGEN Not checking for library in Download TETGEN: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libtet.a'] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libtet.a'] [] Checking for optional headers [] in Download TETGEN: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Found header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking for headers ['tetgen.h'] in Download TETGEN: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['tetgen.h'] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking include with compiler flags var CXXPPFLAGS ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicxx -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.opencascade -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.cc Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['tetgen.h'] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.tetgen/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.tetgen -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC -std=gnu++17 -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.tetgen/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.tetgen/conftest.cc:9:3: error: no matching function for call to 'tetrahedralize' tetrahedralize(args, &in, &out); ^~~~~~~~~~~~~~ /PETSc3/petsc/petsc-pylith/arch-master-debug/include/tetgen.h:2301:6: note: candidate function not viable: no known conversion from 'char [1]' to 'tetgenbehavior *' for 1st argument void tetrahedralize(tetgenbehavior *b, tetgenio *in, tetgenio *out, ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { char args[] = ""; tetgenio in,out; tetrahedralize(args, &in, &out); ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.tetgen/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.tetgen -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC -std=gnu++17 -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include -DTETLIBRARY /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.tetgen/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char args[] = ""; tetgenio in,out; tetrahedralize(args, &in, &out); ; return 0; } Defined "HAVE_TETGEN_TETLIBRARY_NEEDED" to "1" ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicxx -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.tetgen/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.tetgen -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -fPIC -std=gnu++17 -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include -DTETLIBRARY /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.tetgen/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char args[] = ""; tetgenio in,out; tetrahedralize(args, &in, &out); ; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.tetgen/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.tetgen/conftest.o -Wl,-rpath,/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -L/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -ltet -lc++ -ldl ============================================================================================= TESTING: checkVersion from config.packages.tetgen(config/BuildSystem/config/package.py:1071) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:996) By default we don't care about checking if the library is shared child config.packages.tetgen 1.745779 ============================================================================================= TESTING: consistencyChecks from config.packages.tchem(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.001050 ============================================================================================= TESTING: consistencyChecks from config.packages.saws(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.001024 ============================================================================================= TESTING: consistencyChecks from config.packages.libpng(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.001021 ============================================================================================= TESTING: consistencyChecks from config.packages.hcephes(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hcephes(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.hcephes 0.001024 ============================================================================================= TESTING: consistencyChecks from config.packages.combblas(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.001034 ============================================================================================= TESTING: consistencyChecks from config.packages.Triangle(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.Triangle(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.Triangle(config/BuildSystem/config/packages/Triangle.py:126) ================================================================================== Checking for a functional Triangle Looking for TRIANGLE at git.triangle, hg.triangle or a directory starting with ['petsc-pkg-triangle', 'Triangle'] Found a copy of TRIANGLE in git.triangle Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v1.3-p2^{commit}'] Executing: ['git', 'rev-parse', 'v1.3-p2'] stdout: 83097fb451da7944460445a6f55008c3de0fae8b Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing make.inc Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '83097fb451da7944460445a6f55008c3de0fae8b'] Detected Darwin/MacOSX Catalina OS Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 500 Detected CLANG compiler Executing: uname -s stdout: Darwin Makefile /PETSc3/petsc/petsc-pylith/arch-master-debug/lib/petsc/conf/pkg.conf.triangle has correct checksum Commit file /PETSc3/petsc/petsc-pylith/arch-master-debug/lib/petsc/conf/pkg.gitcommit.triangle has correct checksum Do not need to rebuild TRIANGLE Checking for library in Download TRIANGLE: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libtriangle.a'] Contents of /PETSc3/petsc/petsc-pylith/arch-master-debug: ['obj', 'bin', 'SEACASProjRepoVersion.txt', 'include', 'tests', 'etc', 'lib', 'externalpackages', 'share'] Contents /PETSc3/petsc/petsc-pylith/arch-master-debug/lib: ['libTKBool.dylib', 'libml.a', 'libTKSTEPBase.7.dylib', 'libpetsc.3.014.4.dylib', 'libTKOffset.7.5.0.dylib', 'libTKIGES.7.dylib', 'libpnetcdf.dylib', 'libsuplib_c.dylib', 'libpetsc.3.015.0.dylib', 'libpetsc.3.016.1.dylib', 'libTKBRep.dylib', 'libpetsc.3.014.4.dylib.dSYM', 'libTKSTEP209.7.dylib', 'libpetsc.3.013.4.dylib.dSYM', 'libexodus.2.dylib', 'libTKMesh.7.dylib', 'libpetsc.3.015.1.dylib.dSYM', 'libsc.a', 'libpetsc.3.015.2.dylib', 'libTKSTEP.7.5.0.dylib', 'libTKG2d.7.dylib', 'libTKG3d.7.dylib', 'libnetcdf.la', 'libTKPrim.7.5.0.dylib', 'pkgconfig', 'libTKG3d.dylib', 'libTKSTEP209.7.5.0.dylib', 'libpetsc.3.014.dylib', 'libsc-2.0.dylib', 'libpetsc.3.014.2.dylib', 'libpetsc.3.015.4.dylib.dSYM', 'libnetcdf.dylib', 'libexoIIv2c.a', 'libpetsc.3.015.4.dylib', 'cmake', 'libpetsc.3.014.0.dylib', 'libTKXSBase.7.dylib', 'libpetsc.3.014.1.dylib.dSYM', 'libnetcdf.13.dylib.dSYM', 'libpetsc.3.013.1.dylib.dSYM', 'libp4est.dylib', 'libpetsc.3.016.dylib', 'libTKernel.dylib', 'libpetsc.3.015.3.dylib', 'libTKShHealing.dylib', 'libTKGeomBase.7.5.0.dylib', 'libTKTopAlgo.7.dylib', 'libpnetcdf.4.dylib.dSYM', 'libTKSTEP209.dylib', 'libsuplib_cpp.2.dylib', 'libpetsc.3.013.dylib', 'libTKIGES.dylib', 'libTKGeomBase.7.dylib', 'libpetsc.3.014.5.dylib', 'libpetsc.3.015.3.dylib.dSYM', 'libTKBRep.7.5.0.dylib', 'libpetsc.3.015.1.dylib', 'exodus2.py', 'libTKGeomBase.dylib', 'libpetsc.3.016.0.dylib', 'libTKSTEP.dylib', 'libTKGeomAlgo.7.5.0.dylib', 'libTKPrim.dylib', 'libtriangle.a', 'libexodus.a', 'libp4est-2.0.7-1727.dylib', 'libTKSTEPBase.dylib', 'exodus3.py', 'libTKBool.7.dylib', 'libpetsc.3.014.1.dylib', 'libTKOffset.7.dylib', 'libpetsc.3.014.3.dylib.dSYM', 'libpetsc.3.014.3.dylib', 'libpetsc.3.013.3.dylib.dSYM', 'libexodus.dylib', 'libTKBO.dylib', 'libpetsc.3.015.dylib', 'libTKSTEPAttr.7.5.0.dylib', 'libTKShHealing.7.dylib', 'libpetsc.3.016.0.dylib.dSYM', 'libTKIGES.7.5.0.dylib', 'libTKPrim.7.dylib', 'libTKFillet.7.dylib', 'libpnetcdf.la', 'libTKSTEPBase.7.5.0.dylib', 'libTKFeat.7.5.0.dylib', 'libnetcdf.settings', '.DIR', 'libTKFillet.7.5.0.dylib', 'exomerge2.py', 'libTKXMesh.7.5.0.dylib', 'libnetcdf.13.dylib', 'libTKTopAlgo.dylib', 'libTKHLR.7.5.0.dylib', 'libTKBRep.7.dylib', 'libpnetcdf.4.dylib', 'libTKFeat.7.dylib', 'libpetsc.3.014.0.dylib.dSYM', 'libTKTopAlgo.7.5.0.dylib', 'libpetsc.3.013.4.dylib', 'libpetsc.3.013.0.dylib.dSYM', 'libTKFillet.dylib', 'libmetis.dylib', 'libpetsc.3.013.0.dylib', 'libsc.dylib', 'libTKBO.7.5.0.dylib', 'libpetsc.3.014.5.dylib.dSYM', 'libctetgen.a', 'libnetcdf.a', 'libTKernel.7.5.0.dylib', 'libp4est.a', 'libegadslite.a', 'libTKHLR.dylib', 'libpetsc.3.015.0.dylib.dSYM', 'libTKernel.7.dylib', 'libpetsc.3.013.2.dylib', 'libTKG2d.dylib', 'libpnetcdf.a', 'exomerge3.py', 'libTKXMesh.7.dylib', 'petsc', 'libTKGeomAlgo.7.dylib', 'libsc.la', 'libsuplib_c.2.0.dylib', 'libTKHLR.7.dylib', 'libsuplib_c.2.dylib', 'libp4est.la', 'libTKMath.7.dylib', 'libTKOffset.dylib', 'libsuplib_cpp.2.0.dylib', 'libTKMath.7.5.0.dylib', 'libpetsc.3.014.2.dylib.dSYM', 'libTKMath.dylib', 'libTKShHealing.7.5.0.dylib', 'libpetsc.dylib', 'libpetsc.3.013.2.dylib.dSYM', 'libTKMesh.7.5.0.dylib', 'libchaco.a', 'libTKG2d.7.5.0.dylib', 'libTKMesh.dylib', 'libpetsc.3.016.1.dylib.dSYM', 'libegads.a', 'libmetis.dylib.dSYM', 'libTKGeomAlgo.dylib', 'libTKSTEPAttr.7.dylib', 'libparmetis.dylib.dSYM', 'libTKFeat.dylib', 'libexodus.2.0.dylib', 'libTKBool.7.5.0.dylib', 'exodus.py', 'libTKSTEPAttr.dylib', 'libTKBO.7.dylib', 'libpetsc.3.013.3.dylib', 'libTKXSBase.7.5.0.dylib', 'libTKSTEP.7.dylib', 'libparmetis.dylib', 'libpetsc.3.013.1.dylib', 'libTKXMesh.dylib', 'libsuplib_cpp.dylib', 'libtet.a', 'libTKG3d.7.5.0.dylib', 'exomerge.py', 'libexodus.2.0.dylib.dSYM', 'libpetsc.3.015.2.dylib.dSYM', 'libTKXSBase.dylib'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [triangulate] in library ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libtriangle.a'] [] Checking directory of requested libraries:/PETSc3/petsc/petsc-pylith/arch-master-debug/lib for first library:libtriangle. Files in directory:['libTKBool.dylib', 'libml.a', 'libTKSTEPBase.7.dylib', 'libpetsc.3.014.4.dylib', 'libTKOffset.7.5.0.dylib', 'libTKIGES.7.dylib', 'libpnetcdf.dylib', 'libsuplib_c.dylib', 'libpetsc.3.015.0.dylib', 'libpetsc.3.016.1.dylib', 'libTKBRep.dylib', 'libpetsc.3.014.4.dylib.dSYM', 'libTKSTEP209.7.dylib', 'libpetsc.3.013.4.dylib.dSYM', 'libexodus.2.dylib', 'libTKMesh.7.dylib', 'libpetsc.3.015.1.dylib.dSYM', 'libsc.a', 'libpetsc.3.015.2.dylib', 'libTKSTEP.7.5.0.dylib', 'libTKG2d.7.dylib', 'libTKG3d.7.dylib', 'libnetcdf.la', 'libTKPrim.7.5.0.dylib', 'pkgconfig', 'libTKG3d.dylib', 'libTKSTEP209.7.5.0.dylib', 'libpetsc.3.014.dylib', 'libsc-2.0.dylib', 'libpetsc.3.014.2.dylib', 'libpetsc.3.015.4.dylib.dSYM', 'libnetcdf.dylib', 'libexoIIv2c.a', 'libpetsc.3.015.4.dylib', 'cmake', 'libpetsc.3.014.0.dylib', 'libTKXSBase.7.dylib', 'libpetsc.3.014.1.dylib.dSYM', 'libnetcdf.13.dylib.dSYM', 'libpetsc.3.013.1.dylib.dSYM', 'libp4est.dylib', 'libpetsc.3.016.dylib', 'libTKernel.dylib', 'libpetsc.3.015.3.dylib', 'libTKShHealing.dylib', 'libTKGeomBase.7.5.0.dylib', 'libTKTopAlgo.7.dylib', 'libpnetcdf.4.dylib.dSYM', 'libTKSTEP209.dylib', 'libsuplib_cpp.2.dylib', 'libpetsc.3.013.dylib', 'libTKIGES.dylib', 'libTKGeomBase.7.dylib', 'libpetsc.3.014.5.dylib', 'libpetsc.3.015.3.dylib.dSYM', 'libTKBRep.7.5.0.dylib', 'libpetsc.3.015.1.dylib', 'exodus2.py', 'libTKGeomBase.dylib', 'libpetsc.3.016.0.dylib', 'libTKSTEP.dylib', 'libTKGeomAlgo.7.5.0.dylib', 'libTKPrim.dylib', 'libtriangle.a', 'libexodus.a', 'libp4est-2.0.7-1727.dylib', 'libTKSTEPBase.dylib', 'exodus3.py', 'libTKBool.7.dylib', 'libpetsc.3.014.1.dylib', 'libTKOffset.7.dylib', 'libpetsc.3.014.3.dylib.dSYM', 'libpetsc.3.014.3.dylib', 'libpetsc.3.013.3.dylib.dSYM', 'libexodus.dylib', 'libTKBO.dylib', 'libpetsc.3.015.dylib', 'libTKSTEPAttr.7.5.0.dylib', 'libTKShHealing.7.dylib', 'libpetsc.3.016.0.dylib.dSYM', 'libTKIGES.7.5.0.dylib', 'libTKPrim.7.dylib', 'libTKFillet.7.dylib', 'libpnetcdf.la', 'libTKSTEPBase.7.5.0.dylib', 'libTKFeat.7.5.0.dylib', 'libnetcdf.settings', '.DIR', 'libTKFillet.7.5.0.dylib', 'exomerge2.py', 'libTKXMesh.7.5.0.dylib', 'libnetcdf.13.dylib', 'libTKTopAlgo.dylib', 'libTKHLR.7.5.0.dylib', 'libTKBRep.7.dylib', 'libpnetcdf.4.dylib', 'libTKFeat.7.dylib', 'libpetsc.3.014.0.dylib.dSYM', 'libTKTopAlgo.7.5.0.dylib', 'libpetsc.3.013.4.dylib', 'libpetsc.3.013.0.dylib.dSYM', 'libTKFillet.dylib', 'libmetis.dylib', 'libpetsc.3.013.0.dylib', 'libsc.dylib', 'libTKBO.7.5.0.dylib', 'libpetsc.3.014.5.dylib.dSYM', 'libctetgen.a', 'libnetcdf.a', 'libTKernel.7.5.0.dylib', 'libp4est.a', 'libegadslite.a', 'libTKHLR.dylib', 'libpetsc.3.015.0.dylib.dSYM', 'libTKernel.7.dylib', 'libpetsc.3.013.2.dylib', 'libTKG2d.dylib', 'libpnetcdf.a', 'exomerge3.py', 'libTKXMesh.7.dylib', 'petsc', 'libTKGeomAlgo.7.dylib', 'libsc.la', 'libsuplib_c.2.0.dylib', 'libTKHLR.7.dylib', 'libsuplib_c.2.dylib', 'libp4est.la', 'libTKMath.7.dylib', 'libTKOffset.dylib', 'libsuplib_cpp.2.0.dylib', 'libTKMath.7.5.0.dylib', 'libpetsc.3.014.2.dylib.dSYM', 'libTKMath.dylib', 'libTKShHealing.7.5.0.dylib', 'libpetsc.dylib', 'libpetsc.3.013.2.dylib.dSYM', 'libTKMesh.7.5.0.dylib', 'libchaco.a', 'libTKG2d.7.5.0.dylib', 'libTKMesh.dylib', 'libpetsc.3.016.1.dylib.dSYM', 'libegads.a', 'libmetis.dylib.dSYM', 'libTKGeomAlgo.dylib', 'libTKSTEPAttr.7.dylib', 'libparmetis.dylib.dSYM', 'libTKFeat.dylib', 'libexodus.2.0.dylib', 'libTKBool.7.5.0.dylib', 'exodus.py', 'libTKSTEPAttr.dylib', 'libTKBO.7.dylib', 'libpetsc.3.013.3.dylib', 'libTKXSBase.7.5.0.dylib', 'libTKSTEP.7.dylib', 'libparmetis.dylib', 'libpetsc.3.013.1.dylib', 'libTKXMesh.dylib', 'libsuplib_cpp.dylib', 'libtet.a', 'libTKG3d.7.5.0.dylib', 'exomerge.py', 'libexodus.2.0.dylib.dSYM', 'libpetsc.3.015.2.dylib.dSYM', 'libTKXSBase.dylib'] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char triangulate(); static void _check_triangulate() { triangulate(); } int main() { _check_triangulate();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -Wl,-rpath,/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -L/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -ltriangle -lc++ -ldl Checking for optional headers [] in Download TRIANGLE: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Found header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking for headers ['triangle.h'] in Download TRIANGLE: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['triangle.h'] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking include with compiler flags var CPPFLAGS ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.zlib -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['triangle.h'] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkVersion from config.packages.Triangle(config/BuildSystem/config/package.py:1071) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:996) By default we don't care about checking if the library is shared child config.packages.Triangle 1.224568 ============================================================================================= TESTING: consistencyChecks from config.packages.metis(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.metis(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.metis(config/BuildSystem/config/packages/metis.py:46) ================================================================================== Checking for a functional metis Looking for METIS at git.metis, hg.metis or a directory starting with ['petsc-pkg-metis'] Found a copy of METIS in git.metis Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v5.1.0-p10^{commit}'] Executing: ['git', 'rev-parse', 'v5.1.0-p10'] stdout: c8d2dc1e751ef7ebe5e221156d7572d7cea26990 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing metis.petscconf Removing petsc-build/ Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', 'c8d2dc1e751ef7ebe5e221156d7572d7cea26990'] Detected Darwin/MacOSX Catalina OS Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 500 Detected CLANG compiler Makefile /PETSc3/petsc/petsc-pylith/arch-master-debug/lib/petsc/conf/pkg.conf.metis has correct checksum Commit file /PETSc3/petsc/petsc-pylith/arch-master-debug/lib/petsc/conf/pkg.gitcommit.metis has correct checksum Do not need to rebuild METIS Checking for library in Download METIS: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libmetis.a'] Contents of /PETSc3/petsc/petsc-pylith/arch-master-debug: ['obj', 'bin', 'SEACASProjRepoVersion.txt', 'include', 'tests', 'etc', 'lib', 'externalpackages', 'share'] Contents /PETSc3/petsc/petsc-pylith/arch-master-debug/lib: ['libTKBool.dylib', 'libml.a', 'libTKSTEPBase.7.dylib', 'libpetsc.3.014.4.dylib', 'libTKOffset.7.5.0.dylib', 'libTKIGES.7.dylib', 'libpnetcdf.dylib', 'libsuplib_c.dylib', 'libpetsc.3.015.0.dylib', 'libpetsc.3.016.1.dylib', 'libTKBRep.dylib', 'libpetsc.3.014.4.dylib.dSYM', 'libTKSTEP209.7.dylib', 'libpetsc.3.013.4.dylib.dSYM', 'libexodus.2.dylib', 'libTKMesh.7.dylib', 'libpetsc.3.015.1.dylib.dSYM', 'libsc.a', 'libpetsc.3.015.2.dylib', 'libTKSTEP.7.5.0.dylib', 'libTKG2d.7.dylib', 'libTKG3d.7.dylib', 'libnetcdf.la', 'libTKPrim.7.5.0.dylib', 'pkgconfig', 'libTKG3d.dylib', 'libTKSTEP209.7.5.0.dylib', 'libpetsc.3.014.dylib', 'libsc-2.0.dylib', 'libpetsc.3.014.2.dylib', 'libpetsc.3.015.4.dylib.dSYM', 'libnetcdf.dylib', 'libexoIIv2c.a', 'libpetsc.3.015.4.dylib', 'cmake', 'libpetsc.3.014.0.dylib', 'libTKXSBase.7.dylib', 'libpetsc.3.014.1.dylib.dSYM', 'libnetcdf.13.dylib.dSYM', 'libpetsc.3.013.1.dylib.dSYM', 'libp4est.dylib', 'libpetsc.3.016.dylib', 'libTKernel.dylib', 'libpetsc.3.015.3.dylib', 'libTKShHealing.dylib', 'libTKGeomBase.7.5.0.dylib', 'libTKTopAlgo.7.dylib', 'libpnetcdf.4.dylib.dSYM', 'libTKSTEP209.dylib', 'libsuplib_cpp.2.dylib', 'libpetsc.3.013.dylib', 'libTKIGES.dylib', 'libTKGeomBase.7.dylib', 'libpetsc.3.014.5.dylib', 'libpetsc.3.015.3.dylib.dSYM', 'libTKBRep.7.5.0.dylib', 'libpetsc.3.015.1.dylib', 'exodus2.py', 'libTKGeomBase.dylib', 'libpetsc.3.016.0.dylib', 'libTKSTEP.dylib', 'libTKGeomAlgo.7.5.0.dylib', 'libTKPrim.dylib', 'libtriangle.a', 'libexodus.a', 'libp4est-2.0.7-1727.dylib', 'libTKSTEPBase.dylib', 'exodus3.py', 'libTKBool.7.dylib', 'libpetsc.3.014.1.dylib', 'libTKOffset.7.dylib', 'libpetsc.3.014.3.dylib.dSYM', 'libpetsc.3.014.3.dylib', 'libpetsc.3.013.3.dylib.dSYM', 'libexodus.dylib', 'libTKBO.dylib', 'libpetsc.3.015.dylib', 'libTKSTEPAttr.7.5.0.dylib', 'libTKShHealing.7.dylib', 'libpetsc.3.016.0.dylib.dSYM', 'libTKIGES.7.5.0.dylib', 'libTKPrim.7.dylib', 'libTKFillet.7.dylib', 'libpnetcdf.la', 'libTKSTEPBase.7.5.0.dylib', 'libTKFeat.7.5.0.dylib', 'libnetcdf.settings', '.DIR', 'libTKFillet.7.5.0.dylib', 'exomerge2.py', 'libTKXMesh.7.5.0.dylib', 'libnetcdf.13.dylib', 'libTKTopAlgo.dylib', 'libTKHLR.7.5.0.dylib', 'libTKBRep.7.dylib', 'libpnetcdf.4.dylib', 'libTKFeat.7.dylib', 'libpetsc.3.014.0.dylib.dSYM', 'libTKTopAlgo.7.5.0.dylib', 'libpetsc.3.013.4.dylib', 'libpetsc.3.013.0.dylib.dSYM', 'libTKFillet.dylib', 'libmetis.dylib', 'libpetsc.3.013.0.dylib', 'libsc.dylib', 'libTKBO.7.5.0.dylib', 'libpetsc.3.014.5.dylib.dSYM', 'libctetgen.a', 'libnetcdf.a', 'libTKernel.7.5.0.dylib', 'libp4est.a', 'libegadslite.a', 'libTKHLR.dylib', 'libpetsc.3.015.0.dylib.dSYM', 'libTKernel.7.dylib', 'libpetsc.3.013.2.dylib', 'libTKG2d.dylib', 'libpnetcdf.a', 'exomerge3.py', 'libTKXMesh.7.dylib', 'petsc', 'libTKGeomAlgo.7.dylib', 'libsc.la', 'libsuplib_c.2.0.dylib', 'libTKHLR.7.dylib', 'libsuplib_c.2.dylib', 'libp4est.la', 'libTKMath.7.dylib', 'libTKOffset.dylib', 'libsuplib_cpp.2.0.dylib', 'libTKMath.7.5.0.dylib', 'libpetsc.3.014.2.dylib.dSYM', 'libTKMath.dylib', 'libTKShHealing.7.5.0.dylib', 'libpetsc.dylib', 'libpetsc.3.013.2.dylib.dSYM', 'libTKMesh.7.5.0.dylib', 'libchaco.a', 'libTKG2d.7.5.0.dylib', 'libTKMesh.dylib', 'libpetsc.3.016.1.dylib.dSYM', 'libegads.a', 'libmetis.dylib.dSYM', 'libTKGeomAlgo.dylib', 'libTKSTEPAttr.7.dylib', 'libparmetis.dylib.dSYM', 'libTKFeat.dylib', 'libexodus.2.0.dylib', 'libTKBool.7.5.0.dylib', 'exodus.py', 'libTKSTEPAttr.dylib', 'libTKBO.7.dylib', 'libpetsc.3.013.3.dylib', 'libTKXSBase.7.5.0.dylib', 'libTKSTEP.7.dylib', 'libparmetis.dylib', 'libpetsc.3.013.1.dylib', 'libTKXMesh.dylib', 'libsuplib_cpp.dylib', 'libtet.a', 'libTKG3d.7.5.0.dylib', 'exomerge.py', 'libexodus.2.0.dylib.dSYM', 'libpetsc.3.015.2.dylib.dSYM', 'libTKXSBase.dylib'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [METIS_PartGraphKway] in library ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libmetis.a'] [] Checking directory of requested libraries:/PETSc3/petsc/petsc-pylith/arch-master-debug/lib for first library:libmetis. Files in directory:['libTKBool.dylib', 'libml.a', 'libTKSTEPBase.7.dylib', 'libpetsc.3.014.4.dylib', 'libTKOffset.7.5.0.dylib', 'libTKIGES.7.dylib', 'libpnetcdf.dylib', 'libsuplib_c.dylib', 'libpetsc.3.015.0.dylib', 'libpetsc.3.016.1.dylib', 'libTKBRep.dylib', 'libpetsc.3.014.4.dylib.dSYM', 'libTKSTEP209.7.dylib', 'libpetsc.3.013.4.dylib.dSYM', 'libexodus.2.dylib', 'libTKMesh.7.dylib', 'libpetsc.3.015.1.dylib.dSYM', 'libsc.a', 'libpetsc.3.015.2.dylib', 'libTKSTEP.7.5.0.dylib', 'libTKG2d.7.dylib', 'libTKG3d.7.dylib', 'libnetcdf.la', 'libTKPrim.7.5.0.dylib', 'pkgconfig', 'libTKG3d.dylib', 'libTKSTEP209.7.5.0.dylib', 'libpetsc.3.014.dylib', 'libsc-2.0.dylib', 'libpetsc.3.014.2.dylib', 'libpetsc.3.015.4.dylib.dSYM', 'libnetcdf.dylib', 'libexoIIv2c.a', 'libpetsc.3.015.4.dylib', 'cmake', 'libpetsc.3.014.0.dylib', 'libTKXSBase.7.dylib', 'libpetsc.3.014.1.dylib.dSYM', 'libnetcdf.13.dylib.dSYM', 'libpetsc.3.013.1.dylib.dSYM', 'libp4est.dylib', 'libpetsc.3.016.dylib', 'libTKernel.dylib', 'libpetsc.3.015.3.dylib', 'libTKShHealing.dylib', 'libTKGeomBase.7.5.0.dylib', 'libTKTopAlgo.7.dylib', 'libpnetcdf.4.dylib.dSYM', 'libTKSTEP209.dylib', 'libsuplib_cpp.2.dylib', 'libpetsc.3.013.dylib', 'libTKIGES.dylib', 'libTKGeomBase.7.dylib', 'libpetsc.3.014.5.dylib', 'libpetsc.3.015.3.dylib.dSYM', 'libTKBRep.7.5.0.dylib', 'libpetsc.3.015.1.dylib', 'exodus2.py', 'libTKGeomBase.dylib', 'libpetsc.3.016.0.dylib', 'libTKSTEP.dylib', 'libTKGeomAlgo.7.5.0.dylib', 'libTKPrim.dylib', 'libtriangle.a', 'libexodus.a', 'libp4est-2.0.7-1727.dylib', 'libTKSTEPBase.dylib', 'exodus3.py', 'libTKBool.7.dylib', 'libpetsc.3.014.1.dylib', 'libTKOffset.7.dylib', 'libpetsc.3.014.3.dylib.dSYM', 'libpetsc.3.014.3.dylib', 'libpetsc.3.013.3.dylib.dSYM', 'libexodus.dylib', 'libTKBO.dylib', 'libpetsc.3.015.dylib', 'libTKSTEPAttr.7.5.0.dylib', 'libTKShHealing.7.dylib', 'libpetsc.3.016.0.dylib.dSYM', 'libTKIGES.7.5.0.dylib', 'libTKPrim.7.dylib', 'libTKFillet.7.dylib', 'libpnetcdf.la', 'libTKSTEPBase.7.5.0.dylib', 'libTKFeat.7.5.0.dylib', 'libnetcdf.settings', '.DIR', 'libTKFillet.7.5.0.dylib', 'exomerge2.py', 'libTKXMesh.7.5.0.dylib', 'libnetcdf.13.dylib', 'libTKTopAlgo.dylib', 'libTKHLR.7.5.0.dylib', 'libTKBRep.7.dylib', 'libpnetcdf.4.dylib', 'libTKFeat.7.dylib', 'libpetsc.3.014.0.dylib.dSYM', 'libTKTopAlgo.7.5.0.dylib', 'libpetsc.3.013.4.dylib', 'libpetsc.3.013.0.dylib.dSYM', 'libTKFillet.dylib', 'libmetis.dylib', 'libpetsc.3.013.0.dylib', 'libsc.dylib', 'libTKBO.7.5.0.dylib', 'libpetsc.3.014.5.dylib.dSYM', 'libctetgen.a', 'libnetcdf.a', 'libTKernel.7.5.0.dylib', 'libp4est.a', 'libegadslite.a', 'libTKHLR.dylib', 'libpetsc.3.015.0.dylib.dSYM', 'libTKernel.7.dylib', 'libpetsc.3.013.2.dylib', 'libTKG2d.dylib', 'libpnetcdf.a', 'exomerge3.py', 'libTKXMesh.7.dylib', 'petsc', 'libTKGeomAlgo.7.dylib', 'libsc.la', 'libsuplib_c.2.0.dylib', 'libTKHLR.7.dylib', 'libsuplib_c.2.dylib', 'libp4est.la', 'libTKMath.7.dylib', 'libTKOffset.dylib', 'libsuplib_cpp.2.0.dylib', 'libTKMath.7.5.0.dylib', 'libpetsc.3.014.2.dylib.dSYM', 'libTKMath.dylib', 'libTKShHealing.7.5.0.dylib', 'libpetsc.dylib', 'libpetsc.3.013.2.dylib.dSYM', 'libTKMesh.7.5.0.dylib', 'libchaco.a', 'libTKG2d.7.5.0.dylib', 'libTKMesh.dylib', 'libpetsc.3.016.1.dylib.dSYM', 'libegads.a', 'libmetis.dylib.dSYM', 'libTKGeomAlgo.dylib', 'libTKSTEPAttr.7.dylib', 'libparmetis.dylib.dSYM', 'libTKFeat.dylib', 'libexodus.2.0.dylib', 'libTKBool.7.5.0.dylib', 'exodus.py', 'libTKSTEPAttr.dylib', 'libTKBO.7.dylib', 'libpetsc.3.013.3.dylib', 'libTKXSBase.7.5.0.dylib', 'libTKSTEP.7.dylib', 'libparmetis.dylib', 'libpetsc.3.013.1.dylib', 'libTKXMesh.dylib', 'libsuplib_cpp.dylib', 'libtet.a', 'libTKG3d.7.5.0.dylib', 'exomerge.py', 'libexodus.2.0.dylib.dSYM', 'libpetsc.3.015.2.dylib.dSYM', 'libTKXSBase.dylib'] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char METIS_PartGraphKway(); static void _check_METIS_PartGraphKway() { METIS_PartGraphKway(); } int main() { _check_METIS_PartGraphKway();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -Wl,-rpath,/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -L/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -lmetis -lc++ -ldl Checking for optional headers [] in Download METIS: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Found header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking for headers ['metis.h'] in Download METIS: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['metis.h'] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking include with compiler flags var CPPFLAGS ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.zlib -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['metis.h'] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis/conftest.c:8:7: warning: extra tokens at end of #endif directive [-Wextra-tokens] #endif; ^ // 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include "metis.h" int main() { #if (IDXTYPEWIDTH != 32) #error incompatible IDXTYPEWIDTH #endif; return 0; } ============================================================================================= TESTING: checkVersion from config.packages.metis(config/BuildSystem/config/package.py:1071) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "metis.h" petscpkgver(METIS_VER_MAJOR.METIS_VER_MINOR.METIS_VER_SUBMINOR); Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.zlib -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis/conftest.c For metis need <= 5.1.0 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.metis(config/BuildSystem/config/package.py:996) By default we don't care about checking if the library is shared child config.packages.metis 1.791470 ============================================================================================= TESTING: consistencyChecks from config.packages.pragmatic(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic 0.001532 ============================================================================================= TESTING: consistencyChecks from config.packages.parmetis(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.parmetis(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.parmetis(config/BuildSystem/config/packages/parmetis.py:41) ================================================================================== Checking for a functional parmetis Looking for PARMETIS at git.parmetis, hg.parmetis or a directory starting with ['petsc-pkg-parmetis'] Found a copy of PARMETIS in git.parmetis Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v4.0.3-p6^{commit}'] Executing: ['git', 'rev-parse', 'v4.0.3-p6'] stdout: 475d8facbb324527c205f1f78a7c90bd160bddcd Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing parmetis.petscconf Removing petsc-build/ Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '475d8facbb324527c205f1f78a7c90bd160bddcd'] Detected Darwin/MacOSX Catalina OS Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 500 Detected CLANG compiler Makefile /PETSc3/petsc/petsc-pylith/arch-master-debug/lib/petsc/conf/pkg.conf.parmetis has correct checksum Commit file /PETSc3/petsc/petsc-pylith/arch-master-debug/lib/petsc/conf/pkg.gitcommit.parmetis has correct checksum Do not need to rebuild PARMETIS Checking for library in Download PARMETIS: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libparmetis.a'] Contents of /PETSc3/petsc/petsc-pylith/arch-master-debug: ['obj', 'bin', 'SEACASProjRepoVersion.txt', 'include', 'tests', 'etc', 'lib', 'externalpackages', 'share'] Contents /PETSc3/petsc/petsc-pylith/arch-master-debug/lib: ['libTKBool.dylib', 'libml.a', 'libTKSTEPBase.7.dylib', 'libpetsc.3.014.4.dylib', 'libTKOffset.7.5.0.dylib', 'libTKIGES.7.dylib', 'libpnetcdf.dylib', 'libsuplib_c.dylib', 'libpetsc.3.015.0.dylib', 'libpetsc.3.016.1.dylib', 'libTKBRep.dylib', 'libpetsc.3.014.4.dylib.dSYM', 'libTKSTEP209.7.dylib', 'libpetsc.3.013.4.dylib.dSYM', 'libexodus.2.dylib', 'libTKMesh.7.dylib', 'libpetsc.3.015.1.dylib.dSYM', 'libsc.a', 'libpetsc.3.015.2.dylib', 'libTKSTEP.7.5.0.dylib', 'libTKG2d.7.dylib', 'libTKG3d.7.dylib', 'libnetcdf.la', 'libTKPrim.7.5.0.dylib', 'pkgconfig', 'libTKG3d.dylib', 'libTKSTEP209.7.5.0.dylib', 'libpetsc.3.014.dylib', 'libsc-2.0.dylib', 'libpetsc.3.014.2.dylib', 'libpetsc.3.015.4.dylib.dSYM', 'libnetcdf.dylib', 'libexoIIv2c.a', 'libpetsc.3.015.4.dylib', 'cmake', 'libpetsc.3.014.0.dylib', 'libTKXSBase.7.dylib', 'libpetsc.3.014.1.dylib.dSYM', 'libnetcdf.13.dylib.dSYM', 'libpetsc.3.013.1.dylib.dSYM', 'libp4est.dylib', 'libpetsc.3.016.dylib', 'libTKernel.dylib', 'libpetsc.3.015.3.dylib', 'libTKShHealing.dylib', 'libTKGeomBase.7.5.0.dylib', 'libTKTopAlgo.7.dylib', 'libpnetcdf.4.dylib.dSYM', 'libTKSTEP209.dylib', 'libsuplib_cpp.2.dylib', 'libpetsc.3.013.dylib', 'libTKIGES.dylib', 'libTKGeomBase.7.dylib', 'libpetsc.3.014.5.dylib', 'libpetsc.3.015.3.dylib.dSYM', 'libTKBRep.7.5.0.dylib', 'libpetsc.3.015.1.dylib', 'exodus2.py', 'libTKGeomBase.dylib', 'libpetsc.3.016.0.dylib', 'libTKSTEP.dylib', 'libTKGeomAlgo.7.5.0.dylib', 'libTKPrim.dylib', 'libtriangle.a', 'libexodus.a', 'libp4est-2.0.7-1727.dylib', 'libTKSTEPBase.dylib', 'exodus3.py', 'libTKBool.7.dylib', 'libpetsc.3.014.1.dylib', 'libTKOffset.7.dylib', 'libpetsc.3.014.3.dylib.dSYM', 'libpetsc.3.014.3.dylib', 'libpetsc.3.013.3.dylib.dSYM', 'libexodus.dylib', 'libTKBO.dylib', 'libpetsc.3.015.dylib', 'libTKSTEPAttr.7.5.0.dylib', 'libTKShHealing.7.dylib', 'libpetsc.3.016.0.dylib.dSYM', 'libTKIGES.7.5.0.dylib', 'libTKPrim.7.dylib', 'libTKFillet.7.dylib', 'libpnetcdf.la', 'libTKSTEPBase.7.5.0.dylib', 'libTKFeat.7.5.0.dylib', 'libnetcdf.settings', '.DIR', 'libTKFillet.7.5.0.dylib', 'exomerge2.py', 'libTKXMesh.7.5.0.dylib', 'libnetcdf.13.dylib', 'libTKTopAlgo.dylib', 'libTKHLR.7.5.0.dylib', 'libTKBRep.7.dylib', 'libpnetcdf.4.dylib', 'libTKFeat.7.dylib', 'libpetsc.3.014.0.dylib.dSYM', 'libTKTopAlgo.7.5.0.dylib', 'libpetsc.3.013.4.dylib', 'libpetsc.3.013.0.dylib.dSYM', 'libTKFillet.dylib', 'libmetis.dylib', 'libpetsc.3.013.0.dylib', 'libsc.dylib', 'libTKBO.7.5.0.dylib', 'libpetsc.3.014.5.dylib.dSYM', 'libctetgen.a', 'libnetcdf.a', 'libTKernel.7.5.0.dylib', 'libp4est.a', 'libegadslite.a', 'libTKHLR.dylib', 'libpetsc.3.015.0.dylib.dSYM', 'libTKernel.7.dylib', 'libpetsc.3.013.2.dylib', 'libTKG2d.dylib', 'libpnetcdf.a', 'exomerge3.py', 'libTKXMesh.7.dylib', 'petsc', 'libTKGeomAlgo.7.dylib', 'libsc.la', 'libsuplib_c.2.0.dylib', 'libTKHLR.7.dylib', 'libsuplib_c.2.dylib', 'libp4est.la', 'libTKMath.7.dylib', 'libTKOffset.dylib', 'libsuplib_cpp.2.0.dylib', 'libTKMath.7.5.0.dylib', 'libpetsc.3.014.2.dylib.dSYM', 'libTKMath.dylib', 'libTKShHealing.7.5.0.dylib', 'libpetsc.dylib', 'libpetsc.3.013.2.dylib.dSYM', 'libTKMesh.7.5.0.dylib', 'libchaco.a', 'libTKG2d.7.5.0.dylib', 'libTKMesh.dylib', 'libpetsc.3.016.1.dylib.dSYM', 'libegads.a', 'libmetis.dylib.dSYM', 'libTKGeomAlgo.dylib', 'libTKSTEPAttr.7.dylib', 'libparmetis.dylib.dSYM', 'libTKFeat.dylib', 'libexodus.2.0.dylib', 'libTKBool.7.5.0.dylib', 'exodus.py', 'libTKSTEPAttr.dylib', 'libTKBO.7.dylib', 'libpetsc.3.013.3.dylib', 'libTKXSBase.7.5.0.dylib', 'libTKSTEP.7.dylib', 'libparmetis.dylib', 'libpetsc.3.013.1.dylib', 'libTKXMesh.dylib', 'libsuplib_cpp.dylib', 'libtet.a', 'libTKG3d.7.5.0.dylib', 'exomerge.py', 'libexodus.2.0.dylib.dSYM', 'libpetsc.3.015.2.dylib.dSYM', 'libTKXSBase.dylib'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ParMETIS_V3_PartKway] in library ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libparmetis.a'] ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libmetis.a'] Checking directory of requested libraries:/PETSc3/petsc/petsc-pylith/arch-master-debug/lib for first library:libparmetis. Files in directory:['libTKBool.dylib', 'libml.a', 'libTKSTEPBase.7.dylib', 'libpetsc.3.014.4.dylib', 'libTKOffset.7.5.0.dylib', 'libTKIGES.7.dylib', 'libpnetcdf.dylib', 'libsuplib_c.dylib', 'libpetsc.3.015.0.dylib', 'libpetsc.3.016.1.dylib', 'libTKBRep.dylib', 'libpetsc.3.014.4.dylib.dSYM', 'libTKSTEP209.7.dylib', 'libpetsc.3.013.4.dylib.dSYM', 'libexodus.2.dylib', 'libTKMesh.7.dylib', 'libpetsc.3.015.1.dylib.dSYM', 'libsc.a', 'libpetsc.3.015.2.dylib', 'libTKSTEP.7.5.0.dylib', 'libTKG2d.7.dylib', 'libTKG3d.7.dylib', 'libnetcdf.la', 'libTKPrim.7.5.0.dylib', 'pkgconfig', 'libTKG3d.dylib', 'libTKSTEP209.7.5.0.dylib', 'libpetsc.3.014.dylib', 'libsc-2.0.dylib', 'libpetsc.3.014.2.dylib', 'libpetsc.3.015.4.dylib.dSYM', 'libnetcdf.dylib', 'libexoIIv2c.a', 'libpetsc.3.015.4.dylib', 'cmake', 'libpetsc.3.014.0.dylib', 'libTKXSBase.7.dylib', 'libpetsc.3.014.1.dylib.dSYM', 'libnetcdf.13.dylib.dSYM', 'libpetsc.3.013.1.dylib.dSYM', 'libp4est.dylib', 'libpetsc.3.016.dylib', 'libTKernel.dylib', 'libpetsc.3.015.3.dylib', 'libTKShHealing.dylib', 'libTKGeomBase.7.5.0.dylib', 'libTKTopAlgo.7.dylib', 'libpnetcdf.4.dylib.dSYM', 'libTKSTEP209.dylib', 'libsuplib_cpp.2.dylib', 'libpetsc.3.013.dylib', 'libTKIGES.dylib', 'libTKGeomBase.7.dylib', 'libpetsc.3.014.5.dylib', 'libpetsc.3.015.3.dylib.dSYM', 'libTKBRep.7.5.0.dylib', 'libpetsc.3.015.1.dylib', 'exodus2.py', 'libTKGeomBase.dylib', 'libpetsc.3.016.0.dylib', 'libTKSTEP.dylib', 'libTKGeomAlgo.7.5.0.dylib', 'libTKPrim.dylib', 'libtriangle.a', 'libexodus.a', 'libp4est-2.0.7-1727.dylib', 'libTKSTEPBase.dylib', 'exodus3.py', 'libTKBool.7.dylib', 'libpetsc.3.014.1.dylib', 'libTKOffset.7.dylib', 'libpetsc.3.014.3.dylib.dSYM', 'libpetsc.3.014.3.dylib', 'libpetsc.3.013.3.dylib.dSYM', 'libexodus.dylib', 'libTKBO.dylib', 'libpetsc.3.015.dylib', 'libTKSTEPAttr.7.5.0.dylib', 'libTKShHealing.7.dylib', 'libpetsc.3.016.0.dylib.dSYM', 'libTKIGES.7.5.0.dylib', 'libTKPrim.7.dylib', 'libTKFillet.7.dylib', 'libpnetcdf.la', 'libTKSTEPBase.7.5.0.dylib', 'libTKFeat.7.5.0.dylib', 'libnetcdf.settings', '.DIR', 'libTKFillet.7.5.0.dylib', 'exomerge2.py', 'libTKXMesh.7.5.0.dylib', 'libnetcdf.13.dylib', 'libTKTopAlgo.dylib', 'libTKHLR.7.5.0.dylib', 'libTKBRep.7.dylib', 'libpnetcdf.4.dylib', 'libTKFeat.7.dylib', 'libpetsc.3.014.0.dylib.dSYM', 'libTKTopAlgo.7.5.0.dylib', 'libpetsc.3.013.4.dylib', 'libpetsc.3.013.0.dylib.dSYM', 'libTKFillet.dylib', 'libmetis.dylib', 'libpetsc.3.013.0.dylib', 'libsc.dylib', 'libTKBO.7.5.0.dylib', 'libpetsc.3.014.5.dylib.dSYM', 'libctetgen.a', 'libnetcdf.a', 'libTKernel.7.5.0.dylib', 'libp4est.a', 'libegadslite.a', 'libTKHLR.dylib', 'libpetsc.3.015.0.dylib.dSYM', 'libTKernel.7.dylib', 'libpetsc.3.013.2.dylib', 'libTKG2d.dylib', 'libpnetcdf.a', 'exomerge3.py', 'libTKXMesh.7.dylib', 'petsc', 'libTKGeomAlgo.7.dylib', 'libsc.la', 'libsuplib_c.2.0.dylib', 'libTKHLR.7.dylib', 'libsuplib_c.2.dylib', 'libp4est.la', 'libTKMath.7.dylib', 'libTKOffset.dylib', 'libsuplib_cpp.2.0.dylib', 'libTKMath.7.5.0.dylib', 'libpetsc.3.014.2.dylib.dSYM', 'libTKMath.dylib', 'libTKShHealing.7.5.0.dylib', 'libpetsc.dylib', 'libpetsc.3.013.2.dylib.dSYM', 'libTKMesh.7.5.0.dylib', 'libchaco.a', 'libTKG2d.7.5.0.dylib', 'libTKMesh.dylib', 'libpetsc.3.016.1.dylib.dSYM', 'libegads.a', 'libmetis.dylib.dSYM', 'libTKGeomAlgo.dylib', 'libTKSTEPAttr.7.dylib', 'libparmetis.dylib.dSYM', 'libTKFeat.dylib', 'libexodus.2.0.dylib', 'libTKBool.7.5.0.dylib', 'exodus.py', 'libTKSTEPAttr.dylib', 'libTKBO.7.dylib', 'libpetsc.3.013.3.dylib', 'libTKXSBase.7.5.0.dylib', 'libTKSTEP.7.dylib', 'libparmetis.dylib', 'libpetsc.3.013.1.dylib', 'libTKXMesh.dylib', 'libsuplib_cpp.dylib', 'libtet.a', 'libTKG3d.7.5.0.dylib', 'exomerge.py', 'libexodus.2.0.dylib.dSYM', 'libpetsc.3.015.2.dylib.dSYM', 'libTKXSBase.dylib'] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_V3_PartKway(); static void _check_ParMETIS_V3_PartKway() { ParMETIS_V3_PartKway(); } int main() { _check_ParMETIS_V3_PartKway();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -Wl,-rpath,/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -L/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -lparmetis -Wl,-rpath,/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -L/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -lmetis -lc++ -ldl Checking for optional headers [] in Download PARMETIS: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Found header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking for headers ['parmetis.h'] in Download PARMETIS: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['parmetis.h'] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking include with compiler flags var CPPFLAGS ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include', '/PETSc3/petsc/petsc-pylith/arch-master-debug/include', '/PETSc3/petsc/apple/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.zlib -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['parmetis.h'] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking for functions [ParMETIS_ComputeVertexSeparator] in library ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libparmetis.a'] ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libmetis.a'] Checking directory of requested libraries:/PETSc3/petsc/petsc-pylith/arch-master-debug/lib for first library:libparmetis. Files in directory:['libTKBool.dylib', 'libml.a', 'libTKSTEPBase.7.dylib', 'libpetsc.3.014.4.dylib', 'libTKOffset.7.5.0.dylib', 'libTKIGES.7.dylib', 'libpnetcdf.dylib', 'libsuplib_c.dylib', 'libpetsc.3.015.0.dylib', 'libpetsc.3.016.1.dylib', 'libTKBRep.dylib', 'libpetsc.3.014.4.dylib.dSYM', 'libTKSTEP209.7.dylib', 'libpetsc.3.013.4.dylib.dSYM', 'libexodus.2.dylib', 'libTKMesh.7.dylib', 'libpetsc.3.015.1.dylib.dSYM', 'libsc.a', 'libpetsc.3.015.2.dylib', 'libTKSTEP.7.5.0.dylib', 'libTKG2d.7.dylib', 'libTKG3d.7.dylib', 'libnetcdf.la', 'libTKPrim.7.5.0.dylib', 'pkgconfig', 'libTKG3d.dylib', 'libTKSTEP209.7.5.0.dylib', 'libpetsc.3.014.dylib', 'libsc-2.0.dylib', 'libpetsc.3.014.2.dylib', 'libpetsc.3.015.4.dylib.dSYM', 'libnetcdf.dylib', 'libexoIIv2c.a', 'libpetsc.3.015.4.dylib', 'cmake', 'libpetsc.3.014.0.dylib', 'libTKXSBase.7.dylib', 'libpetsc.3.014.1.dylib.dSYM', 'libnetcdf.13.dylib.dSYM', 'libpetsc.3.013.1.dylib.dSYM', 'libp4est.dylib', 'libpetsc.3.016.dylib', 'libTKernel.dylib', 'libpetsc.3.015.3.dylib', 'libTKShHealing.dylib', 'libTKGeomBase.7.5.0.dylib', 'libTKTopAlgo.7.dylib', 'libpnetcdf.4.dylib.dSYM', 'libTKSTEP209.dylib', 'libsuplib_cpp.2.dylib', 'libpetsc.3.013.dylib', 'libTKIGES.dylib', 'libTKGeomBase.7.dylib', 'libpetsc.3.014.5.dylib', 'libpetsc.3.015.3.dylib.dSYM', 'libTKBRep.7.5.0.dylib', 'libpetsc.3.015.1.dylib', 'exodus2.py', 'libTKGeomBase.dylib', 'libpetsc.3.016.0.dylib', 'libTKSTEP.dylib', 'libTKGeomAlgo.7.5.0.dylib', 'libTKPrim.dylib', 'libtriangle.a', 'libexodus.a', 'libp4est-2.0.7-1727.dylib', 'libTKSTEPBase.dylib', 'exodus3.py', 'libTKBool.7.dylib', 'libpetsc.3.014.1.dylib', 'libTKOffset.7.dylib', 'libpetsc.3.014.3.dylib.dSYM', 'libpetsc.3.014.3.dylib', 'libpetsc.3.013.3.dylib.dSYM', 'libexodus.dylib', 'libTKBO.dylib', 'libpetsc.3.015.dylib', 'libTKSTEPAttr.7.5.0.dylib', 'libTKShHealing.7.dylib', 'libpetsc.3.016.0.dylib.dSYM', 'libTKIGES.7.5.0.dylib', 'libTKPrim.7.dylib', 'libTKFillet.7.dylib', 'libpnetcdf.la', 'libTKSTEPBase.7.5.0.dylib', 'libTKFeat.7.5.0.dylib', 'libnetcdf.settings', '.DIR', 'libTKFillet.7.5.0.dylib', 'exomerge2.py', 'libTKXMesh.7.5.0.dylib', 'libnetcdf.13.dylib', 'libTKTopAlgo.dylib', 'libTKHLR.7.5.0.dylib', 'libTKBRep.7.dylib', 'libpnetcdf.4.dylib', 'libTKFeat.7.dylib', 'libpetsc.3.014.0.dylib.dSYM', 'libTKTopAlgo.7.5.0.dylib', 'libpetsc.3.013.4.dylib', 'libpetsc.3.013.0.dylib.dSYM', 'libTKFillet.dylib', 'libmetis.dylib', 'libpetsc.3.013.0.dylib', 'libsc.dylib', 'libTKBO.7.5.0.dylib', 'libpetsc.3.014.5.dylib.dSYM', 'libctetgen.a', 'libnetcdf.a', 'libTKernel.7.5.0.dylib', 'libp4est.a', 'libegadslite.a', 'libTKHLR.dylib', 'libpetsc.3.015.0.dylib.dSYM', 'libTKernel.7.dylib', 'libpetsc.3.013.2.dylib', 'libTKG2d.dylib', 'libpnetcdf.a', 'exomerge3.py', 'libTKXMesh.7.dylib', 'petsc', 'libTKGeomAlgo.7.dylib', 'libsc.la', 'libsuplib_c.2.0.dylib', 'libTKHLR.7.dylib', 'libsuplib_c.2.dylib', 'libp4est.la', 'libTKMath.7.dylib', 'libTKOffset.dylib', 'libsuplib_cpp.2.0.dylib', 'libTKMath.7.5.0.dylib', 'libpetsc.3.014.2.dylib.dSYM', 'libTKMath.dylib', 'libTKShHealing.7.5.0.dylib', 'libpetsc.dylib', 'libpetsc.3.013.2.dylib.dSYM', 'libTKMesh.7.5.0.dylib', 'libchaco.a', 'libTKG2d.7.5.0.dylib', 'libTKMesh.dylib', 'libpetsc.3.016.1.dylib.dSYM', 'libegads.a', 'libmetis.dylib.dSYM', 'libTKGeomAlgo.dylib', 'libTKSTEPAttr.7.dylib', 'libparmetis.dylib.dSYM', 'libTKFeat.dylib', 'libexodus.2.0.dylib', 'libTKBool.7.5.0.dylib', 'exodus.py', 'libTKSTEPAttr.dylib', 'libTKBO.7.dylib', 'libpetsc.3.013.3.dylib', 'libTKXSBase.7.5.0.dylib', 'libTKSTEP.7.dylib', 'libparmetis.dylib', 'libpetsc.3.013.1.dylib', 'libTKXMesh.dylib', 'libsuplib_cpp.dylib', 'libtet.a', 'libTKG3d.7.5.0.dylib', 'exomerge.py', 'libexodus.2.0.dylib.dSYM', 'libpetsc.3.015.2.dylib.dSYM', 'libTKXSBase.dylib'] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_ComputeVertexSeparator(); static void _check_ParMETIS_ComputeVertexSeparator() { ParMETIS_ComputeVertexSeparator(); } int main() { _check_ParMETIS_ComputeVertexSeparator();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -Wl,-rpath,/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -L/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -lparmetis -Wl,-rpath,/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -L/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -lmetis -lc++ -ldl ============================================================================================= TESTING: checkVersion from config.packages.parmetis(config/BuildSystem/config/package.py:1071) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "parmetis.h" petscpkgver(PARMETIS_MAJOR_VERSION.PARMETIS_MINOR_VERSION.PARMETIS_SUBMINOR_VERSION); Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.zlib -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.parmetis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.parmetis/conftest.c For parmetis need <= 4.0.3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:996) By default we don't care about checking if the library is shared child config.packages.parmetis 2.209674 ============================================================================================= TESTING: consistencyChecks from config.packages.Chaco(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.Chaco(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.Chaco(config/BuildSystem/config/packages/Chaco.py:56) ================================================================================== Checking for a functional Chaco Looking for CHACO at git.chaco, hg.chaco or a directory starting with ['petsc-pkg-chaco', 'Chaco'] Found a copy of CHACO in Chaco-2.2-p2 chacoDir = /PETSc3/petsc/petsc-pylith/arch-master-debug/externalpackages/Chaco-2.2-p2 installDir /PETSc3/petsc/petsc-pylith/arch-master-debug Detected Darwin/MacOSX Catalina OS Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 500 Detected CLANG compiler Detected Darwin/MacOSX Catalina OS Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 500 Detected CLANG compiler Makefile /PETSc3/petsc/petsc-pylith/arch-master-debug/lib/petsc/conf/pkg.conf.chaco has correct checksum Do not need to rebuild CHACO Checking for library in Download CHACO: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libchaco.a'] Contents of /PETSc3/petsc/petsc-pylith/arch-master-debug: ['obj', 'bin', 'SEACASProjRepoVersion.txt', 'include', 'tests', 'etc', 'lib', 'externalpackages', 'share'] Contents /PETSc3/petsc/petsc-pylith/arch-master-debug/lib: ['libTKBool.dylib', 'libml.a', 'libTKSTEPBase.7.dylib', 'libpetsc.3.014.4.dylib', 'libTKOffset.7.5.0.dylib', 'libTKIGES.7.dylib', 'libpnetcdf.dylib', 'libsuplib_c.dylib', 'libpetsc.3.015.0.dylib', 'libpetsc.3.016.1.dylib', 'libTKBRep.dylib', 'libpetsc.3.014.4.dylib.dSYM', 'libTKSTEP209.7.dylib', 'libpetsc.3.013.4.dylib.dSYM', 'libexodus.2.dylib', 'libTKMesh.7.dylib', 'libpetsc.3.015.1.dylib.dSYM', 'libsc.a', 'libpetsc.3.015.2.dylib', 'libTKSTEP.7.5.0.dylib', 'libTKG2d.7.dylib', 'libTKG3d.7.dylib', 'libnetcdf.la', 'libTKPrim.7.5.0.dylib', 'pkgconfig', 'libTKG3d.dylib', 'libTKSTEP209.7.5.0.dylib', 'libpetsc.3.014.dylib', 'libsc-2.0.dylib', 'libpetsc.3.014.2.dylib', 'libpetsc.3.015.4.dylib.dSYM', 'libnetcdf.dylib', 'libexoIIv2c.a', 'libpetsc.3.015.4.dylib', 'cmake', 'libpetsc.3.014.0.dylib', 'libTKXSBase.7.dylib', 'libpetsc.3.014.1.dylib.dSYM', 'libnetcdf.13.dylib.dSYM', 'libpetsc.3.013.1.dylib.dSYM', 'libp4est.dylib', 'libpetsc.3.016.dylib', 'libTKernel.dylib', 'libpetsc.3.015.3.dylib', 'libTKShHealing.dylib', 'libTKGeomBase.7.5.0.dylib', 'libTKTopAlgo.7.dylib', 'libpnetcdf.4.dylib.dSYM', 'libTKSTEP209.dylib', 'libsuplib_cpp.2.dylib', 'libpetsc.3.013.dylib', 'libTKIGES.dylib', 'libTKGeomBase.7.dylib', 'libpetsc.3.014.5.dylib', 'libpetsc.3.015.3.dylib.dSYM', 'libTKBRep.7.5.0.dylib', 'libpetsc.3.015.1.dylib', 'exodus2.py', 'libTKGeomBase.dylib', 'libpetsc.3.016.0.dylib', 'libTKSTEP.dylib', 'libTKGeomAlgo.7.5.0.dylib', 'libTKPrim.dylib', 'libtriangle.a', 'libexodus.a', 'libp4est-2.0.7-1727.dylib', 'libTKSTEPBase.dylib', 'exodus3.py', 'libTKBool.7.dylib', 'libpetsc.3.014.1.dylib', 'libTKOffset.7.dylib', 'libpetsc.3.014.3.dylib.dSYM', 'libpetsc.3.014.3.dylib', 'libpetsc.3.013.3.dylib.dSYM', 'libexodus.dylib', 'libTKBO.dylib', 'libpetsc.3.015.dylib', 'libTKSTEPAttr.7.5.0.dylib', 'libTKShHealing.7.dylib', 'libpetsc.3.016.0.dylib.dSYM', 'libTKIGES.7.5.0.dylib', 'libTKPrim.7.dylib', 'libTKFillet.7.dylib', 'libpnetcdf.la', 'libTKSTEPBase.7.5.0.dylib', 'libTKFeat.7.5.0.dylib', 'libnetcdf.settings', '.DIR', 'libTKFillet.7.5.0.dylib', 'exomerge2.py', 'libTKXMesh.7.5.0.dylib', 'libnetcdf.13.dylib', 'libTKTopAlgo.dylib', 'libTKHLR.7.5.0.dylib', 'libTKBRep.7.dylib', 'libpnetcdf.4.dylib', 'libTKFeat.7.dylib', 'libpetsc.3.014.0.dylib.dSYM', 'libTKTopAlgo.7.5.0.dylib', 'libpetsc.3.013.4.dylib', 'libpetsc.3.013.0.dylib.dSYM', 'libTKFillet.dylib', 'libmetis.dylib', 'libpetsc.3.013.0.dylib', 'libsc.dylib', 'libTKBO.7.5.0.dylib', 'libpetsc.3.014.5.dylib.dSYM', 'libctetgen.a', 'libnetcdf.a', 'libTKernel.7.5.0.dylib', 'libp4est.a', 'libegadslite.a', 'libTKHLR.dylib', 'libpetsc.3.015.0.dylib.dSYM', 'libTKernel.7.dylib', 'libpetsc.3.013.2.dylib', 'libTKG2d.dylib', 'libpnetcdf.a', 'exomerge3.py', 'libTKXMesh.7.dylib', 'petsc', 'libTKGeomAlgo.7.dylib', 'libsc.la', 'libsuplib_c.2.0.dylib', 'libTKHLR.7.dylib', 'libsuplib_c.2.dylib', 'libp4est.la', 'libTKMath.7.dylib', 'libTKOffset.dylib', 'libsuplib_cpp.2.0.dylib', 'libTKMath.7.5.0.dylib', 'libpetsc.3.014.2.dylib.dSYM', 'libTKMath.dylib', 'libTKShHealing.7.5.0.dylib', 'libpetsc.dylib', 'libpetsc.3.013.2.dylib.dSYM', 'libTKMesh.7.5.0.dylib', 'libchaco.a', 'libTKG2d.7.5.0.dylib', 'libTKMesh.dylib', 'libpetsc.3.016.1.dylib.dSYM', 'libegads.a', 'libmetis.dylib.dSYM', 'libTKGeomAlgo.dylib', 'libTKSTEPAttr.7.dylib', 'libparmetis.dylib.dSYM', 'libTKFeat.dylib', 'libexodus.2.0.dylib', 'libTKBool.7.5.0.dylib', 'exodus.py', 'libTKSTEPAttr.dylib', 'libTKBO.7.dylib', 'libpetsc.3.013.3.dylib', 'libTKXSBase.7.5.0.dylib', 'libTKSTEP.7.dylib', 'libparmetis.dylib', 'libpetsc.3.013.1.dylib', 'libTKXMesh.dylib', 'libsuplib_cpp.dylib', 'libtet.a', 'libTKG3d.7.5.0.dylib', 'exomerge.py', 'libexodus.2.0.dylib.dSYM', 'libpetsc.3.015.2.dylib.dSYM', 'libTKXSBase.dylib'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [interface] in library ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libchaco.a'] [] Checking directory of requested libraries:/PETSc3/petsc/petsc-pylith/arch-master-debug/lib for first library:libchaco. Files in directory:['libTKBool.dylib', 'libml.a', 'libTKSTEPBase.7.dylib', 'libpetsc.3.014.4.dylib', 'libTKOffset.7.5.0.dylib', 'libTKIGES.7.dylib', 'libpnetcdf.dylib', 'libsuplib_c.dylib', 'libpetsc.3.015.0.dylib', 'libpetsc.3.016.1.dylib', 'libTKBRep.dylib', 'libpetsc.3.014.4.dylib.dSYM', 'libTKSTEP209.7.dylib', 'libpetsc.3.013.4.dylib.dSYM', 'libexodus.2.dylib', 'libTKMesh.7.dylib', 'libpetsc.3.015.1.dylib.dSYM', 'libsc.a', 'libpetsc.3.015.2.dylib', 'libTKSTEP.7.5.0.dylib', 'libTKG2d.7.dylib', 'libTKG3d.7.dylib', 'libnetcdf.la', 'libTKPrim.7.5.0.dylib', 'pkgconfig', 'libTKG3d.dylib', 'libTKSTEP209.7.5.0.dylib', 'libpetsc.3.014.dylib', 'libsc-2.0.dylib', 'libpetsc.3.014.2.dylib', 'libpetsc.3.015.4.dylib.dSYM', 'libnetcdf.dylib', 'libexoIIv2c.a', 'libpetsc.3.015.4.dylib', 'cmake', 'libpetsc.3.014.0.dylib', 'libTKXSBase.7.dylib', 'libpetsc.3.014.1.dylib.dSYM', 'libnetcdf.13.dylib.dSYM', 'libpetsc.3.013.1.dylib.dSYM', 'libp4est.dylib', 'libpetsc.3.016.dylib', 'libTKernel.dylib', 'libpetsc.3.015.3.dylib', 'libTKShHealing.dylib', 'libTKGeomBase.7.5.0.dylib', 'libTKTopAlgo.7.dylib', 'libpnetcdf.4.dylib.dSYM', 'libTKSTEP209.dylib', 'libsuplib_cpp.2.dylib', 'libpetsc.3.013.dylib', 'libTKIGES.dylib', 'libTKGeomBase.7.dylib', 'libpetsc.3.014.5.dylib', 'libpetsc.3.015.3.dylib.dSYM', 'libTKBRep.7.5.0.dylib', 'libpetsc.3.015.1.dylib', 'exodus2.py', 'libTKGeomBase.dylib', 'libpetsc.3.016.0.dylib', 'libTKSTEP.dylib', 'libTKGeomAlgo.7.5.0.dylib', 'libTKPrim.dylib', 'libtriangle.a', 'libexodus.a', 'libp4est-2.0.7-1727.dylib', 'libTKSTEPBase.dylib', 'exodus3.py', 'libTKBool.7.dylib', 'libpetsc.3.014.1.dylib', 'libTKOffset.7.dylib', 'libpetsc.3.014.3.dylib.dSYM', 'libpetsc.3.014.3.dylib', 'libpetsc.3.013.3.dylib.dSYM', 'libexodus.dylib', 'libTKBO.dylib', 'libpetsc.3.015.dylib', 'libTKSTEPAttr.7.5.0.dylib', 'libTKShHealing.7.dylib', 'libpetsc.3.016.0.dylib.dSYM', 'libTKIGES.7.5.0.dylib', 'libTKPrim.7.dylib', 'libTKFillet.7.dylib', 'libpnetcdf.la', 'libTKSTEPBase.7.5.0.dylib', 'libTKFeat.7.5.0.dylib', 'libnetcdf.settings', '.DIR', 'libTKFillet.7.5.0.dylib', 'exomerge2.py', 'libTKXMesh.7.5.0.dylib', 'libnetcdf.13.dylib', 'libTKTopAlgo.dylib', 'libTKHLR.7.5.0.dylib', 'libTKBRep.7.dylib', 'libpnetcdf.4.dylib', 'libTKFeat.7.dylib', 'libpetsc.3.014.0.dylib.dSYM', 'libTKTopAlgo.7.5.0.dylib', 'libpetsc.3.013.4.dylib', 'libpetsc.3.013.0.dylib.dSYM', 'libTKFillet.dylib', 'libmetis.dylib', 'libpetsc.3.013.0.dylib', 'libsc.dylib', 'libTKBO.7.5.0.dylib', 'libpetsc.3.014.5.dylib.dSYM', 'libctetgen.a', 'libnetcdf.a', 'libTKernel.7.5.0.dylib', 'libp4est.a', 'libegadslite.a', 'libTKHLR.dylib', 'libpetsc.3.015.0.dylib.dSYM', 'libTKernel.7.dylib', 'libpetsc.3.013.2.dylib', 'libTKG2d.dylib', 'libpnetcdf.a', 'exomerge3.py', 'libTKXMesh.7.dylib', 'petsc', 'libTKGeomAlgo.7.dylib', 'libsc.la', 'libsuplib_c.2.0.dylib', 'libTKHLR.7.dylib', 'libsuplib_c.2.dylib', 'libp4est.la', 'libTKMath.7.dylib', 'libTKOffset.dylib', 'libsuplib_cpp.2.0.dylib', 'libTKMath.7.5.0.dylib', 'libpetsc.3.014.2.dylib.dSYM', 'libTKMath.dylib', 'libTKShHealing.7.5.0.dylib', 'libpetsc.dylib', 'libpetsc.3.013.2.dylib.dSYM', 'libTKMesh.7.5.0.dylib', 'libchaco.a', 'libTKG2d.7.5.0.dylib', 'libTKMesh.dylib', 'libpetsc.3.016.1.dylib.dSYM', 'libegads.a', 'libmetis.dylib.dSYM', 'libTKGeomAlgo.dylib', 'libTKSTEPAttr.7.dylib', 'libparmetis.dylib.dSYM', 'libTKFeat.dylib', 'libexodus.2.0.dylib', 'libTKBool.7.5.0.dylib', 'exodus.py', 'libTKSTEPAttr.dylib', 'libTKBO.7.dylib', 'libpetsc.3.013.3.dylib', 'libTKXSBase.7.5.0.dylib', 'libTKSTEP.7.dylib', 'libparmetis.dylib', 'libpetsc.3.013.1.dylib', 'libTKXMesh.dylib', 'libsuplib_cpp.dylib', 'libtet.a', 'libTKG3d.7.5.0.dylib', 'exomerge.py', 'libexodus.2.0.dylib.dSYM', 'libpetsc.3.015.2.dylib.dSYM', 'libTKXSBase.dylib'] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char interface(); static void _check_interface() { interface(); } int main() { _check_interface();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -Wl,-rpath,/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -L/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -lchaco -lc++ -ldl Checking for optional headers [] in Download CHACO: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Found header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking for headers [] in Download CHACO: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking for functions [ddot_chaco] in library ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libchaco.a'] [] Checking directory of requested libraries:/PETSc3/petsc/petsc-pylith/arch-master-debug/lib for first library:libchaco. Files in directory:['libTKBool.dylib', 'libml.a', 'libTKSTEPBase.7.dylib', 'libpetsc.3.014.4.dylib', 'libTKOffset.7.5.0.dylib', 'libTKIGES.7.dylib', 'libpnetcdf.dylib', 'libsuplib_c.dylib', 'libpetsc.3.015.0.dylib', 'libpetsc.3.016.1.dylib', 'libTKBRep.dylib', 'libpetsc.3.014.4.dylib.dSYM', 'libTKSTEP209.7.dylib', 'libpetsc.3.013.4.dylib.dSYM', 'libexodus.2.dylib', 'libTKMesh.7.dylib', 'libpetsc.3.015.1.dylib.dSYM', 'libsc.a', 'libpetsc.3.015.2.dylib', 'libTKSTEP.7.5.0.dylib', 'libTKG2d.7.dylib', 'libTKG3d.7.dylib', 'libnetcdf.la', 'libTKPrim.7.5.0.dylib', 'pkgconfig', 'libTKG3d.dylib', 'libTKSTEP209.7.5.0.dylib', 'libpetsc.3.014.dylib', 'libsc-2.0.dylib', 'libpetsc.3.014.2.dylib', 'libpetsc.3.015.4.dylib.dSYM', 'libnetcdf.dylib', 'libexoIIv2c.a', 'libpetsc.3.015.4.dylib', 'cmake', 'libpetsc.3.014.0.dylib', 'libTKXSBase.7.dylib', 'libpetsc.3.014.1.dylib.dSYM', 'libnetcdf.13.dylib.dSYM', 'libpetsc.3.013.1.dylib.dSYM', 'libp4est.dylib', 'libpetsc.3.016.dylib', 'libTKernel.dylib', 'libpetsc.3.015.3.dylib', 'libTKShHealing.dylib', 'libTKGeomBase.7.5.0.dylib', 'libTKTopAlgo.7.dylib', 'libpnetcdf.4.dylib.dSYM', 'libTKSTEP209.dylib', 'libsuplib_cpp.2.dylib', 'libpetsc.3.013.dylib', 'libTKIGES.dylib', 'libTKGeomBase.7.dylib', 'libpetsc.3.014.5.dylib', 'libpetsc.3.015.3.dylib.dSYM', 'libTKBRep.7.5.0.dylib', 'libpetsc.3.015.1.dylib', 'exodus2.py', 'libTKGeomBase.dylib', 'libpetsc.3.016.0.dylib', 'libTKSTEP.dylib', 'libTKGeomAlgo.7.5.0.dylib', 'libTKPrim.dylib', 'libtriangle.a', 'libexodus.a', 'libp4est-2.0.7-1727.dylib', 'libTKSTEPBase.dylib', 'exodus3.py', 'libTKBool.7.dylib', 'libpetsc.3.014.1.dylib', 'libTKOffset.7.dylib', 'libpetsc.3.014.3.dylib.dSYM', 'libpetsc.3.014.3.dylib', 'libpetsc.3.013.3.dylib.dSYM', 'libexodus.dylib', 'libTKBO.dylib', 'libpetsc.3.015.dylib', 'libTKSTEPAttr.7.5.0.dylib', 'libTKShHealing.7.dylib', 'libpetsc.3.016.0.dylib.dSYM', 'libTKIGES.7.5.0.dylib', 'libTKPrim.7.dylib', 'libTKFillet.7.dylib', 'libpnetcdf.la', 'libTKSTEPBase.7.5.0.dylib', 'libTKFeat.7.5.0.dylib', 'libnetcdf.settings', '.DIR', 'libTKFillet.7.5.0.dylib', 'exomerge2.py', 'libTKXMesh.7.5.0.dylib', 'libnetcdf.13.dylib', 'libTKTopAlgo.dylib', 'libTKHLR.7.5.0.dylib', 'libTKBRep.7.dylib', 'libpnetcdf.4.dylib', 'libTKFeat.7.dylib', 'libpetsc.3.014.0.dylib.dSYM', 'libTKTopAlgo.7.5.0.dylib', 'libpetsc.3.013.4.dylib', 'libpetsc.3.013.0.dylib.dSYM', 'libTKFillet.dylib', 'libmetis.dylib', 'libpetsc.3.013.0.dylib', 'libsc.dylib', 'libTKBO.7.5.0.dylib', 'libpetsc.3.014.5.dylib.dSYM', 'libctetgen.a', 'libnetcdf.a', 'libTKernel.7.5.0.dylib', 'libp4est.a', 'libegadslite.a', 'libTKHLR.dylib', 'libpetsc.3.015.0.dylib.dSYM', 'libTKernel.7.dylib', 'libpetsc.3.013.2.dylib', 'libTKG2d.dylib', 'libpnetcdf.a', 'exomerge3.py', 'libTKXMesh.7.dylib', 'petsc', 'libTKGeomAlgo.7.dylib', 'libsc.la', 'libsuplib_c.2.0.dylib', 'libTKHLR.7.dylib', 'libsuplib_c.2.dylib', 'libp4est.la', 'libTKMath.7.dylib', 'libTKOffset.dylib', 'libsuplib_cpp.2.0.dylib', 'libTKMath.7.5.0.dylib', 'libpetsc.3.014.2.dylib.dSYM', 'libTKMath.dylib', 'libTKShHealing.7.5.0.dylib', 'libpetsc.dylib', 'libpetsc.3.013.2.dylib.dSYM', 'libTKMesh.7.5.0.dylib', 'libchaco.a', 'libTKG2d.7.5.0.dylib', 'libTKMesh.dylib', 'libpetsc.3.016.1.dylib.dSYM', 'libegads.a', 'libmetis.dylib.dSYM', 'libTKGeomAlgo.dylib', 'libTKSTEPAttr.7.dylib', 'libparmetis.dylib.dSYM', 'libTKFeat.dylib', 'libexodus.2.0.dylib', 'libTKBool.7.5.0.dylib', 'exodus.py', 'libTKSTEPAttr.dylib', 'libTKBO.7.dylib', 'libpetsc.3.013.3.dylib', 'libTKXSBase.7.5.0.dylib', 'libTKSTEP.7.dylib', 'libparmetis.dylib', 'libpetsc.3.013.1.dylib', 'libTKXMesh.dylib', 'libsuplib_cpp.dylib', 'libtet.a', 'libTKG3d.7.5.0.dylib', 'exomerge.py', 'libexodus.2.0.dylib.dSYM', 'libpetsc.3.015.2.dylib.dSYM', 'libTKXSBase.dylib'] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_chaco(); static void _check_ddot_chaco() { ddot_chaco(); } int main() { _check_ddot_chaco();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -Wl,-rpath,/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -L/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -lchaco -lc++ -ldl ============================================================================================= TESTING: checkVersion from config.packages.Chaco(config/BuildSystem/config/package.py:1071) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:996) By default we don't care about checking if the library is shared child config.packages.Chaco 1.685658 Executing: uname -s stdout: Darwin ============================================================================================= TESTING: consistencyChecks from config.packages.hdf5(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.hdf5(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.hdf5(config/BuildSystem/config/packages/hdf5.py:88) ================================================================================== Checking for a functional hdf5 Checking for library in User specified root directory HDF5: ['/PETSc3/petsc/apple/lib/libhdf5_hl.a', 'libhdf5.a'] Contents of /PETSc3/petsc/apple: ['bin', 'include', 'lib', 'doc', 'share'] Contents /PETSc3/petsc/apple/lib: ['libhdf5hl_fortran.200.dylib.dSYM', 'libhdf5_fortran.dylib', 'libhdf5hl_fortran.a', 'libhdf5_fortran.200.dylib.dSYM', 'pkgconfig', 'libmpi.la', 'libhdf5_hl.200.dylib', 'libhdf5.dylib', 'libopa.dylib', 'libhdf5.settings', 'libhdf5_hl.dylib', 'libfmpich.dylib', 'libmpicxx.dylib', 'libhdf5hl_fortran.la', 'libmpi.a', 'libhdf5.a', 'libpmpi.la', 'libmpichcxx.dylib', 'libhdf5hl_fortran.200.dylib', 'libmpi.0.dylib', 'libhdf5_fortran.a', 'libpmpi.a', 'libhdf5hl_fortran.dylib', 'libhdf5.200.dylib.dSYM', 'libpmpi.dylib', 'libmpl.dylib', 'libhdf5_fortran.200.dylib', 'libhdf5_fortran.la', 'libmpifort.0.dylib.dSYM', 'libhdf5_hl_fortran.a', 'libhdf5_hl.200.dylib.dSYM', 'libmpicxx.0.dylib', 'libmpifort.dylib', 'libhdf5_hl.a', 'libmpicxx.0.dylib.dSYM', 'libpmpi.0.dylib.dSYM', 'libmpichf90.dylib', 'libhdf5_hl.la', 'libmpifort.la', 'libmpicxx.a', 'libpmpi.0.dylib', 'libmpich.dylib', 'libmpifort.a', 'libhdf5.200.dylib', 'libmpi.dylib', 'libmpifort.0.dylib', 'libhdf5.la', 'libmpi.0.dylib.dSYM', 'libmpicxx.la'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [H5T_init] in library ['/PETSc3/petsc/apple/lib/libhdf5_hl.a', 'libhdf5.a'] ['libz.a'] Checking directory of requested libraries:/PETSc3/petsc/apple/lib for first library:libhdf5_hl. Files in directory:['libhdf5hl_fortran.200.dylib.dSYM', 'libhdf5_fortran.dylib', 'libhdf5hl_fortran.a', 'libhdf5_fortran.200.dylib.dSYM', 'pkgconfig', 'libmpi.la', 'libhdf5_hl.200.dylib', 'libhdf5.dylib', 'libopa.dylib', 'libhdf5.settings', 'libhdf5_hl.dylib', 'libfmpich.dylib', 'libmpicxx.dylib', 'libhdf5hl_fortran.la', 'libmpi.a', 'libhdf5.a', 'libpmpi.la', 'libmpichcxx.dylib', 'libhdf5hl_fortran.200.dylib', 'libmpi.0.dylib', 'libhdf5_fortran.a', 'libpmpi.a', 'libhdf5hl_fortran.dylib', 'libhdf5.200.dylib.dSYM', 'libpmpi.dylib', 'libmpl.dylib', 'libhdf5_fortran.200.dylib', 'libhdf5_fortran.la', 'libmpifort.0.dylib.dSYM', 'libhdf5_hl_fortran.a', 'libhdf5_hl.200.dylib.dSYM', 'libmpicxx.0.dylib', 'libmpifort.dylib', 'libhdf5_hl.a', 'libmpicxx.0.dylib.dSYM', 'libpmpi.0.dylib.dSYM', 'libmpichf90.dylib', 'libhdf5_hl.la', 'libmpifort.la', 'libmpicxx.a', 'libpmpi.0.dylib', 'libmpich.dylib', 'libmpifort.a', 'libhdf5.200.dylib', 'libmpi.dylib', 'libmpifort.0.dylib', 'libhdf5.la', 'libmpi.0.dylib.dSYM', 'libmpicxx.la'] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char H5T_init(); static void _check_H5T_init() { H5T_init(); } int main() { _check_H5T_init();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -Wl,-rpath,/PETSc3/petsc/apple/lib -L/PETSc3/petsc/apple/lib -lhdf5_hl -lhdf5 -lz -lc++ -ldl Checking for optional headers [] in User specified root directory HDF5: ['/PETSc3/petsc/apple/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/PETSc3/petsc/apple/include'] Found header files [] in ['/PETSc3/petsc/apple/include'] Checking for headers ['hdf5.h'] in User specified root directory HDF5: ['/PETSc3/petsc/apple/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['hdf5.h'] in ['/PETSc3/petsc/apple/include'] Checking include with compiler flags var CPPFLAGS ['/PETSc3/petsc/apple/include', '/PETSc3/petsc/apple/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.zlib -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.parmetis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/PETSc3/petsc/apple/include -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['hdf5.h'] in ['/PETSc3/petsc/apple/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "H5pubconf.h" #if defined(H5_HAVE_ZLIB_H) foundbeast #endif Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.zlib -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.parmetis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.hdf5 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.hdf5/conftest.c Defined "HDF5_HAVE_ZLIB" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "H5pubconf.h" #if defined(H5_HAVE_SZLIB_H) foundbeast #endif Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.zlib -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.parmetis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.hdf5 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.hdf5/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "H5pubconf.h" #if defined(H5_HAVE_PARALLEL) foundbeast #endif Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.zlib -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.parmetis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.hdf5 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.hdf5/conftest.c Defined "HDF5_HAVE_PARALLEL" to "1" ============================================================================================= TESTING: checkVersion from config.packages.hdf5(config/BuildSystem/config/package.py:1071) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "hdf5.h" petscpkgver(H5_VERSION); Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.zlib -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.parmetis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.hdf5 -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.hdf5/conftest.c For hdf5 need 1.8 <= 1.12.0 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:996) By default we don't care about checking if the library is shared child config.packages.hdf5 1.654116 ============================================================================================= TESTING: consistencyChecks from config.packages.med(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.med(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.med 0.001553 ============================================================================================= TESTING: consistencyChecks from config.packages.cgns(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.cgns 0.000831 ============================================================================================= TESTING: consistencyChecks from config.packages.ascem-io(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io 0.000898 ============================================================================================= TESTING: consistencyChecks from config.packages.pflotran(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.pflotran 0.001019 ============================================================================================= TESTING: consistencyChecks from config.packages.alquimia(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.alquimia 0.001020 ============================================================================================= TESTING: consistencyChecks from config.packages.SAMRAI(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SAMRAI(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI 0.000986 child config.packages.flibs 0.000010 ============================================================================================= TESTING: consistencyChecks from config.packages.pnetcdf(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.pnetcdf(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:930) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional pnetcdf Looking for PNETCDF at git.pnetcdf, hg.pnetcdf or a directory starting with ['pnetcdf'] Found a copy of PNETCDF in git.pnetcdf Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'checkpoint.1.12.2^{commit}'] Executing: ['git', 'rev-parse', 'checkpoint.1.12.2'] stdout: c92bf499655397a25505cf6f07275eecb147cbf9 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing pkg.gitcommit Removing pnetcdf.petscconf Executing: ['git', 'checkout', '-f', 'c92bf499655397a25505cf6f07275eecb147cbf9'] Detected Darwin/MacOSX Catalina OS Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 500 Detected CLANG compiler Makefile /PETSc3/petsc/petsc-pylith/arch-master-debug/lib/petsc/conf/pkg.conf.pnetcdf has correct checksum Commit file /PETSc3/petsc/petsc-pylith/arch-master-debug/lib/petsc/conf/pkg.gitcommit.pnetcdf has correct checksum Do not need to rebuild PNETCDF Checking for library in Download PNETCDF: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libpnetcdf.a'] Contents of /PETSc3/petsc/petsc-pylith/arch-master-debug: ['obj', 'bin', 'SEACASProjRepoVersion.txt', 'include', 'tests', 'etc', 'lib', 'externalpackages', 'share'] Contents /PETSc3/petsc/petsc-pylith/arch-master-debug/lib: ['libTKBool.dylib', 'libml.a', 'libTKSTEPBase.7.dylib', 'libpetsc.3.014.4.dylib', 'libTKOffset.7.5.0.dylib', 'libTKIGES.7.dylib', 'libpnetcdf.dylib', 'libsuplib_c.dylib', 'libpetsc.3.015.0.dylib', 'libpetsc.3.016.1.dylib', 'libTKBRep.dylib', 'libpetsc.3.014.4.dylib.dSYM', 'libTKSTEP209.7.dylib', 'libpetsc.3.013.4.dylib.dSYM', 'libexodus.2.dylib', 'libTKMesh.7.dylib', 'libpetsc.3.015.1.dylib.dSYM', 'libsc.a', 'libpetsc.3.015.2.dylib', 'libTKSTEP.7.5.0.dylib', 'libTKG2d.7.dylib', 'libTKG3d.7.dylib', 'libnetcdf.la', 'libTKPrim.7.5.0.dylib', 'pkgconfig', 'libTKG3d.dylib', 'libTKSTEP209.7.5.0.dylib', 'libpetsc.3.014.dylib', 'libsc-2.0.dylib', 'libpetsc.3.014.2.dylib', 'libpetsc.3.015.4.dylib.dSYM', 'libnetcdf.dylib', 'libexoIIv2c.a', 'libpetsc.3.015.4.dylib', 'cmake', 'libpetsc.3.014.0.dylib', 'libTKXSBase.7.dylib', 'libpetsc.3.014.1.dylib.dSYM', 'libnetcdf.13.dylib.dSYM', 'libpetsc.3.013.1.dylib.dSYM', 'libp4est.dylib', 'libpetsc.3.016.dylib', 'libTKernel.dylib', 'libpetsc.3.015.3.dylib', 'libTKShHealing.dylib', 'libTKGeomBase.7.5.0.dylib', 'libTKTopAlgo.7.dylib', 'libpnetcdf.4.dylib.dSYM', 'libTKSTEP209.dylib', 'libsuplib_cpp.2.dylib', 'libpetsc.3.013.dylib', 'libTKIGES.dylib', 'libTKGeomBase.7.dylib', 'libpetsc.3.014.5.dylib', 'libpetsc.3.015.3.dylib.dSYM', 'libTKBRep.7.5.0.dylib', 'libpetsc.3.015.1.dylib', 'exodus2.py', 'libTKGeomBase.dylib', 'libpetsc.3.016.0.dylib', 'libTKSTEP.dylib', 'libTKGeomAlgo.7.5.0.dylib', 'libTKPrim.dylib', 'libtriangle.a', 'libexodus.a', 'libp4est-2.0.7-1727.dylib', 'libTKSTEPBase.dylib', 'exodus3.py', 'libTKBool.7.dylib', 'libpetsc.3.014.1.dylib', 'libTKOffset.7.dylib', 'libpetsc.3.014.3.dylib.dSYM', 'libpetsc.3.014.3.dylib', 'libpetsc.3.013.3.dylib.dSYM', 'libexodus.dylib', 'libTKBO.dylib', 'libpetsc.3.015.dylib', 'libTKSTEPAttr.7.5.0.dylib', 'libTKShHealing.7.dylib', 'libpetsc.3.016.0.dylib.dSYM', 'libTKIGES.7.5.0.dylib', 'libTKPrim.7.dylib', 'libTKFillet.7.dylib', 'libpnetcdf.la', 'libTKSTEPBase.7.5.0.dylib', 'libTKFeat.7.5.0.dylib', 'libnetcdf.settings', '.DIR', 'libTKFillet.7.5.0.dylib', 'exomerge2.py', 'libTKXMesh.7.5.0.dylib', 'libnetcdf.13.dylib', 'libTKTopAlgo.dylib', 'libTKHLR.7.5.0.dylib', 'libTKBRep.7.dylib', 'libpnetcdf.4.dylib', 'libTKFeat.7.dylib', 'libpetsc.3.014.0.dylib.dSYM', 'libTKTopAlgo.7.5.0.dylib', 'libpetsc.3.013.4.dylib', 'libpetsc.3.013.0.dylib.dSYM', 'libTKFillet.dylib', 'libmetis.dylib', 'libpetsc.3.013.0.dylib', 'libsc.dylib', 'libTKBO.7.5.0.dylib', 'libpetsc.3.014.5.dylib.dSYM', 'libctetgen.a', 'libnetcdf.a', 'libTKernel.7.5.0.dylib', 'libp4est.a', 'libegadslite.a', 'libTKHLR.dylib', 'libpetsc.3.015.0.dylib.dSYM', 'libTKernel.7.dylib', 'libpetsc.3.013.2.dylib', 'libTKG2d.dylib', 'libpnetcdf.a', 'exomerge3.py', 'libTKXMesh.7.dylib', 'petsc', 'libTKGeomAlgo.7.dylib', 'libsc.la', 'libsuplib_c.2.0.dylib', 'libTKHLR.7.dylib', 'libsuplib_c.2.dylib', 'libp4est.la', 'libTKMath.7.dylib', 'libTKOffset.dylib', 'libsuplib_cpp.2.0.dylib', 'libTKMath.7.5.0.dylib', 'libpetsc.3.014.2.dylib.dSYM', 'libTKMath.dylib', 'libTKShHealing.7.5.0.dylib', 'libpetsc.dylib', 'libpetsc.3.013.2.dylib.dSYM', 'libTKMesh.7.5.0.dylib', 'libchaco.a', 'libTKG2d.7.5.0.dylib', 'libTKMesh.dylib', 'libpetsc.3.016.1.dylib.dSYM', 'libegads.a', 'libmetis.dylib.dSYM', 'libTKGeomAlgo.dylib', 'libTKSTEPAttr.7.dylib', 'libparmetis.dylib.dSYM', 'libTKFeat.dylib', 'libexodus.2.0.dylib', 'libTKBool.7.5.0.dylib', 'exodus.py', 'libTKSTEPAttr.dylib', 'libTKBO.7.dylib', 'libpetsc.3.013.3.dylib', 'libTKXSBase.7.5.0.dylib', 'libTKSTEP.7.dylib', 'libparmetis.dylib', 'libpetsc.3.013.1.dylib', 'libTKXMesh.dylib', 'libsuplib_cpp.dylib', 'libtet.a', 'libTKG3d.7.5.0.dylib', 'exomerge.py', 'libexodus.2.0.dylib.dSYM', 'libpetsc.3.015.2.dylib.dSYM', 'libTKXSBase.dylib'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ncmpi_create] in library ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libpnetcdf.a'] [] Checking directory of requested libraries:/PETSc3/petsc/petsc-pylith/arch-master-debug/lib for first library:libpnetcdf. Files in directory:['libTKBool.dylib', 'libml.a', 'libTKSTEPBase.7.dylib', 'libpetsc.3.014.4.dylib', 'libTKOffset.7.5.0.dylib', 'libTKIGES.7.dylib', 'libpnetcdf.dylib', 'libsuplib_c.dylib', 'libpetsc.3.015.0.dylib', 'libpetsc.3.016.1.dylib', 'libTKBRep.dylib', 'libpetsc.3.014.4.dylib.dSYM', 'libTKSTEP209.7.dylib', 'libpetsc.3.013.4.dylib.dSYM', 'libexodus.2.dylib', 'libTKMesh.7.dylib', 'libpetsc.3.015.1.dylib.dSYM', 'libsc.a', 'libpetsc.3.015.2.dylib', 'libTKSTEP.7.5.0.dylib', 'libTKG2d.7.dylib', 'libTKG3d.7.dylib', 'libnetcdf.la', 'libTKPrim.7.5.0.dylib', 'pkgconfig', 'libTKG3d.dylib', 'libTKSTEP209.7.5.0.dylib', 'libpetsc.3.014.dylib', 'libsc-2.0.dylib', 'libpetsc.3.014.2.dylib', 'libpetsc.3.015.4.dylib.dSYM', 'libnetcdf.dylib', 'libexoIIv2c.a', 'libpetsc.3.015.4.dylib', 'cmake', 'libpetsc.3.014.0.dylib', 'libTKXSBase.7.dylib', 'libpetsc.3.014.1.dylib.dSYM', 'libnetcdf.13.dylib.dSYM', 'libpetsc.3.013.1.dylib.dSYM', 'libp4est.dylib', 'libpetsc.3.016.dylib', 'libTKernel.dylib', 'libpetsc.3.015.3.dylib', 'libTKShHealing.dylib', 'libTKGeomBase.7.5.0.dylib', 'libTKTopAlgo.7.dylib', 'libpnetcdf.4.dylib.dSYM', 'libTKSTEP209.dylib', 'libsuplib_cpp.2.dylib', 'libpetsc.3.013.dylib', 'libTKIGES.dylib', 'libTKGeomBase.7.dylib', 'libpetsc.3.014.5.dylib', 'libpetsc.3.015.3.dylib.dSYM', 'libTKBRep.7.5.0.dylib', 'libpetsc.3.015.1.dylib', 'exodus2.py', 'libTKGeomBase.dylib', 'libpetsc.3.016.0.dylib', 'libTKSTEP.dylib', 'libTKGeomAlgo.7.5.0.dylib', 'libTKPrim.dylib', 'libtriangle.a', 'libexodus.a', 'libp4est-2.0.7-1727.dylib', 'libTKSTEPBase.dylib', 'exodus3.py', 'libTKBool.7.dylib', 'libpetsc.3.014.1.dylib', 'libTKOffset.7.dylib', 'libpetsc.3.014.3.dylib.dSYM', 'libpetsc.3.014.3.dylib', 'libpetsc.3.013.3.dylib.dSYM', 'libexodus.dylib', 'libTKBO.dylib', 'libpetsc.3.015.dylib', 'libTKSTEPAttr.7.5.0.dylib', 'libTKShHealing.7.dylib', 'libpetsc.3.016.0.dylib.dSYM', 'libTKIGES.7.5.0.dylib', 'libTKPrim.7.dylib', 'libTKFillet.7.dylib', 'libpnetcdf.la', 'libTKSTEPBase.7.5.0.dylib', 'libTKFeat.7.5.0.dylib', 'libnetcdf.settings', '.DIR', 'libTKFillet.7.5.0.dylib', 'exomerge2.py', 'libTKXMesh.7.5.0.dylib', 'libnetcdf.13.dylib', 'libTKTopAlgo.dylib', 'libTKHLR.7.5.0.dylib', 'libTKBRep.7.dylib', 'libpnetcdf.4.dylib', 'libTKFeat.7.dylib', 'libpetsc.3.014.0.dylib.dSYM', 'libTKTopAlgo.7.5.0.dylib', 'libpetsc.3.013.4.dylib', 'libpetsc.3.013.0.dylib.dSYM', 'libTKFillet.dylib', 'libmetis.dylib', 'libpetsc.3.013.0.dylib', 'libsc.dylib', 'libTKBO.7.5.0.dylib', 'libpetsc.3.014.5.dylib.dSYM', 'libctetgen.a', 'libnetcdf.a', 'libTKernel.7.5.0.dylib', 'libp4est.a', 'libegadslite.a', 'libTKHLR.dylib', 'libpetsc.3.015.0.dylib.dSYM', 'libTKernel.7.dylib', 'libpetsc.3.013.2.dylib', 'libTKG2d.dylib', 'libpnetcdf.a', 'exomerge3.py', 'libTKXMesh.7.dylib', 'petsc', 'libTKGeomAlgo.7.dylib', 'libsc.la', 'libsuplib_c.2.0.dylib', 'libTKHLR.7.dylib', 'libsuplib_c.2.dylib', 'libp4est.la', 'libTKMath.7.dylib', 'libTKOffset.dylib', 'libsuplib_cpp.2.0.dylib', 'libTKMath.7.5.0.dylib', 'libpetsc.3.014.2.dylib.dSYM', 'libTKMath.dylib', 'libTKShHealing.7.5.0.dylib', 'libpetsc.dylib', 'libpetsc.3.013.2.dylib.dSYM', 'libTKMesh.7.5.0.dylib', 'libchaco.a', 'libTKG2d.7.5.0.dylib', 'libTKMesh.dylib', 'libpetsc.3.016.1.dylib.dSYM', 'libegads.a', 'libmetis.dylib.dSYM', 'libTKGeomAlgo.dylib', 'libTKSTEPAttr.7.dylib', 'libparmetis.dylib.dSYM', 'libTKFeat.dylib', 'libexodus.2.0.dylib', 'libTKBool.7.5.0.dylib', 'exodus.py', 'libTKSTEPAttr.dylib', 'libTKBO.7.dylib', 'libpetsc.3.013.3.dylib', 'libTKXSBase.7.5.0.dylib', 'libTKSTEP.7.dylib', 'libparmetis.dylib', 'libpetsc.3.013.1.dylib', 'libTKXMesh.dylib', 'libsuplib_cpp.dylib', 'libtet.a', 'libTKG3d.7.5.0.dylib', 'exomerge.py', 'libexodus.2.0.dylib.dSYM', 'libpetsc.3.015.2.dylib.dSYM', 'libTKXSBase.dylib'] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ncmpi_create(); static void _check_ncmpi_create() { ncmpi_create(); } int main() { _check_ncmpi_create();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -Wl,-rpath,/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -L/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -lpnetcdf -lc++ -ldl Checking for optional headers [] in Download PNETCDF: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Found header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking for headers ['pnetcdf.h'] in Download PNETCDF: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pnetcdf.h'] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking include with compiler flags var CPPFLAGS ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include', '/PETSc3/petsc/apple/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.zlib -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.parmetis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.hdf5 -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['pnetcdf.h'] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkVersion from config.packages.pnetcdf(config/BuildSystem/config/package.py:1071) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "pnetcdf.h" petscpkgver(PNETCDF_VERSION); Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.zlib -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.parmetis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.hdf5 -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pnetcdf -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pnetcdf/conftest.c For pnetcdf need <= 1.12.2 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:996) By default we don't care about checking if the library is shared child config.packages.pnetcdf 1.536178 ============================================================================================= TESTING: consistencyChecks from config.packages.netcdf(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.netcdf(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:930) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional netcdf Looking for NETCDF at git.netcdf, hg.netcdf or a directory starting with ['netcdf'] Found a copy of NETCDF in netcdf-4.5.0 Detected Darwin/MacOSX Catalina OS Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 500 Detected CLANG compiler Makefile /PETSc3/petsc/petsc-pylith/arch-master-debug/lib/petsc/conf/pkg.conf.netcdf has correct checksum Do not need to rebuild NETCDF Checking for library in Download NETCDF: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libnetcdf.a'] Contents of /PETSc3/petsc/petsc-pylith/arch-master-debug: ['obj', 'bin', 'SEACASProjRepoVersion.txt', 'include', 'tests', 'etc', 'lib', 'externalpackages', 'share'] Contents /PETSc3/petsc/petsc-pylith/arch-master-debug/lib: ['libTKBool.dylib', 'libml.a', 'libTKSTEPBase.7.dylib', 'libpetsc.3.014.4.dylib', 'libTKOffset.7.5.0.dylib', 'libTKIGES.7.dylib', 'libpnetcdf.dylib', 'libsuplib_c.dylib', 'libpetsc.3.015.0.dylib', 'libpetsc.3.016.1.dylib', 'libTKBRep.dylib', 'libpetsc.3.014.4.dylib.dSYM', 'libTKSTEP209.7.dylib', 'libpetsc.3.013.4.dylib.dSYM', 'libexodus.2.dylib', 'libTKMesh.7.dylib', 'libpetsc.3.015.1.dylib.dSYM', 'libsc.a', 'libpetsc.3.015.2.dylib', 'libTKSTEP.7.5.0.dylib', 'libTKG2d.7.dylib', 'libTKG3d.7.dylib', 'libnetcdf.la', 'libTKPrim.7.5.0.dylib', 'pkgconfig', 'libTKG3d.dylib', 'libTKSTEP209.7.5.0.dylib', 'libpetsc.3.014.dylib', 'libsc-2.0.dylib', 'libpetsc.3.014.2.dylib', 'libpetsc.3.015.4.dylib.dSYM', 'libnetcdf.dylib', 'libexoIIv2c.a', 'libpetsc.3.015.4.dylib', 'cmake', 'libpetsc.3.014.0.dylib', 'libTKXSBase.7.dylib', 'libpetsc.3.014.1.dylib.dSYM', 'libnetcdf.13.dylib.dSYM', 'libpetsc.3.013.1.dylib.dSYM', 'libp4est.dylib', 'libpetsc.3.016.dylib', 'libTKernel.dylib', 'libpetsc.3.015.3.dylib', 'libTKShHealing.dylib', 'libTKGeomBase.7.5.0.dylib', 'libTKTopAlgo.7.dylib', 'libpnetcdf.4.dylib.dSYM', 'libTKSTEP209.dylib', 'libsuplib_cpp.2.dylib', 'libpetsc.3.013.dylib', 'libTKIGES.dylib', 'libTKGeomBase.7.dylib', 'libpetsc.3.014.5.dylib', 'libpetsc.3.015.3.dylib.dSYM', 'libTKBRep.7.5.0.dylib', 'libpetsc.3.015.1.dylib', 'exodus2.py', 'libTKGeomBase.dylib', 'libpetsc.3.016.0.dylib', 'libTKSTEP.dylib', 'libTKGeomAlgo.7.5.0.dylib', 'libTKPrim.dylib', 'libtriangle.a', 'libexodus.a', 'libp4est-2.0.7-1727.dylib', 'libTKSTEPBase.dylib', 'exodus3.py', 'libTKBool.7.dylib', 'libpetsc.3.014.1.dylib', 'libTKOffset.7.dylib', 'libpetsc.3.014.3.dylib.dSYM', 'libpetsc.3.014.3.dylib', 'libpetsc.3.013.3.dylib.dSYM', 'libexodus.dylib', 'libTKBO.dylib', 'libpetsc.3.015.dylib', 'libTKSTEPAttr.7.5.0.dylib', 'libTKShHealing.7.dylib', 'libpetsc.3.016.0.dylib.dSYM', 'libTKIGES.7.5.0.dylib', 'libTKPrim.7.dylib', 'libTKFillet.7.dylib', 'libpnetcdf.la', 'libTKSTEPBase.7.5.0.dylib', 'libTKFeat.7.5.0.dylib', 'libnetcdf.settings', '.DIR', 'libTKFillet.7.5.0.dylib', 'exomerge2.py', 'libTKXMesh.7.5.0.dylib', 'libnetcdf.13.dylib', 'libTKTopAlgo.dylib', 'libTKHLR.7.5.0.dylib', 'libTKBRep.7.dylib', 'libpnetcdf.4.dylib', 'libTKFeat.7.dylib', 'libpetsc.3.014.0.dylib.dSYM', 'libTKTopAlgo.7.5.0.dylib', 'libpetsc.3.013.4.dylib', 'libpetsc.3.013.0.dylib.dSYM', 'libTKFillet.dylib', 'libmetis.dylib', 'libpetsc.3.013.0.dylib', 'libsc.dylib', 'libTKBO.7.5.0.dylib', 'libpetsc.3.014.5.dylib.dSYM', 'libctetgen.a', 'libnetcdf.a', 'libTKernel.7.5.0.dylib', 'libp4est.a', 'libegadslite.a', 'libTKHLR.dylib', 'libpetsc.3.015.0.dylib.dSYM', 'libTKernel.7.dylib', 'libpetsc.3.013.2.dylib', 'libTKG2d.dylib', 'libpnetcdf.a', 'exomerge3.py', 'libTKXMesh.7.dylib', 'petsc', 'libTKGeomAlgo.7.dylib', 'libsc.la', 'libsuplib_c.2.0.dylib', 'libTKHLR.7.dylib', 'libsuplib_c.2.dylib', 'libp4est.la', 'libTKMath.7.dylib', 'libTKOffset.dylib', 'libsuplib_cpp.2.0.dylib', 'libTKMath.7.5.0.dylib', 'libpetsc.3.014.2.dylib.dSYM', 'libTKMath.dylib', 'libTKShHealing.7.5.0.dylib', 'libpetsc.dylib', 'libpetsc.3.013.2.dylib.dSYM', 'libTKMesh.7.5.0.dylib', 'libchaco.a', 'libTKG2d.7.5.0.dylib', 'libTKMesh.dylib', 'libpetsc.3.016.1.dylib.dSYM', 'libegads.a', 'libmetis.dylib.dSYM', 'libTKGeomAlgo.dylib', 'libTKSTEPAttr.7.dylib', 'libparmetis.dylib.dSYM', 'libTKFeat.dylib', 'libexodus.2.0.dylib', 'libTKBool.7.5.0.dylib', 'exodus.py', 'libTKSTEPAttr.dylib', 'libTKBO.7.dylib', 'libpetsc.3.013.3.dylib', 'libTKXSBase.7.5.0.dylib', 'libTKSTEP.7.dylib', 'libparmetis.dylib', 'libpetsc.3.013.1.dylib', 'libTKXMesh.dylib', 'libsuplib_cpp.dylib', 'libtet.a', 'libTKG3d.7.5.0.dylib', 'exomerge.py', 'libexodus.2.0.dylib.dSYM', 'libpetsc.3.015.2.dylib.dSYM', 'libTKXSBase.dylib'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [nccreate] in library ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libnetcdf.a'] ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libpnetcdf.a', '/PETSc3/petsc/apple/lib/libhdf5_hl.a', 'libhdf5.a', 'libz.a'] Checking directory of requested libraries:/PETSc3/petsc/petsc-pylith/arch-master-debug/lib for first library:libnetcdf. Files in directory:['libTKBool.dylib', 'libml.a', 'libTKSTEPBase.7.dylib', 'libpetsc.3.014.4.dylib', 'libTKOffset.7.5.0.dylib', 'libTKIGES.7.dylib', 'libpnetcdf.dylib', 'libsuplib_c.dylib', 'libpetsc.3.015.0.dylib', 'libpetsc.3.016.1.dylib', 'libTKBRep.dylib', 'libpetsc.3.014.4.dylib.dSYM', 'libTKSTEP209.7.dylib', 'libpetsc.3.013.4.dylib.dSYM', 'libexodus.2.dylib', 'libTKMesh.7.dylib', 'libpetsc.3.015.1.dylib.dSYM', 'libsc.a', 'libpetsc.3.015.2.dylib', 'libTKSTEP.7.5.0.dylib', 'libTKG2d.7.dylib', 'libTKG3d.7.dylib', 'libnetcdf.la', 'libTKPrim.7.5.0.dylib', 'pkgconfig', 'libTKG3d.dylib', 'libTKSTEP209.7.5.0.dylib', 'libpetsc.3.014.dylib', 'libsc-2.0.dylib', 'libpetsc.3.014.2.dylib', 'libpetsc.3.015.4.dylib.dSYM', 'libnetcdf.dylib', 'libexoIIv2c.a', 'libpetsc.3.015.4.dylib', 'cmake', 'libpetsc.3.014.0.dylib', 'libTKXSBase.7.dylib', 'libpetsc.3.014.1.dylib.dSYM', 'libnetcdf.13.dylib.dSYM', 'libpetsc.3.013.1.dylib.dSYM', 'libp4est.dylib', 'libpetsc.3.016.dylib', 'libTKernel.dylib', 'libpetsc.3.015.3.dylib', 'libTKShHealing.dylib', 'libTKGeomBase.7.5.0.dylib', 'libTKTopAlgo.7.dylib', 'libpnetcdf.4.dylib.dSYM', 'libTKSTEP209.dylib', 'libsuplib_cpp.2.dylib', 'libpetsc.3.013.dylib', 'libTKIGES.dylib', 'libTKGeomBase.7.dylib', 'libpetsc.3.014.5.dylib', 'libpetsc.3.015.3.dylib.dSYM', 'libTKBRep.7.5.0.dylib', 'libpetsc.3.015.1.dylib', 'exodus2.py', 'libTKGeomBase.dylib', 'libpetsc.3.016.0.dylib', 'libTKSTEP.dylib', 'libTKGeomAlgo.7.5.0.dylib', 'libTKPrim.dylib', 'libtriangle.a', 'libexodus.a', 'libp4est-2.0.7-1727.dylib', 'libTKSTEPBase.dylib', 'exodus3.py', 'libTKBool.7.dylib', 'libpetsc.3.014.1.dylib', 'libTKOffset.7.dylib', 'libpetsc.3.014.3.dylib.dSYM', 'libpetsc.3.014.3.dylib', 'libpetsc.3.013.3.dylib.dSYM', 'libexodus.dylib', 'libTKBO.dylib', 'libpetsc.3.015.dylib', 'libTKSTEPAttr.7.5.0.dylib', 'libTKShHealing.7.dylib', 'libpetsc.3.016.0.dylib.dSYM', 'libTKIGES.7.5.0.dylib', 'libTKPrim.7.dylib', 'libTKFillet.7.dylib', 'libpnetcdf.la', 'libTKSTEPBase.7.5.0.dylib', 'libTKFeat.7.5.0.dylib', 'libnetcdf.settings', '.DIR', 'libTKFillet.7.5.0.dylib', 'exomerge2.py', 'libTKXMesh.7.5.0.dylib', 'libnetcdf.13.dylib', 'libTKTopAlgo.dylib', 'libTKHLR.7.5.0.dylib', 'libTKBRep.7.dylib', 'libpnetcdf.4.dylib', 'libTKFeat.7.dylib', 'libpetsc.3.014.0.dylib.dSYM', 'libTKTopAlgo.7.5.0.dylib', 'libpetsc.3.013.4.dylib', 'libpetsc.3.013.0.dylib.dSYM', 'libTKFillet.dylib', 'libmetis.dylib', 'libpetsc.3.013.0.dylib', 'libsc.dylib', 'libTKBO.7.5.0.dylib', 'libpetsc.3.014.5.dylib.dSYM', 'libctetgen.a', 'libnetcdf.a', 'libTKernel.7.5.0.dylib', 'libp4est.a', 'libegadslite.a', 'libTKHLR.dylib', 'libpetsc.3.015.0.dylib.dSYM', 'libTKernel.7.dylib', 'libpetsc.3.013.2.dylib', 'libTKG2d.dylib', 'libpnetcdf.a', 'exomerge3.py', 'libTKXMesh.7.dylib', 'petsc', 'libTKGeomAlgo.7.dylib', 'libsc.la', 'libsuplib_c.2.0.dylib', 'libTKHLR.7.dylib', 'libsuplib_c.2.dylib', 'libp4est.la', 'libTKMath.7.dylib', 'libTKOffset.dylib', 'libsuplib_cpp.2.0.dylib', 'libTKMath.7.5.0.dylib', 'libpetsc.3.014.2.dylib.dSYM', 'libTKMath.dylib', 'libTKShHealing.7.5.0.dylib', 'libpetsc.dylib', 'libpetsc.3.013.2.dylib.dSYM', 'libTKMesh.7.5.0.dylib', 'libchaco.a', 'libTKG2d.7.5.0.dylib', 'libTKMesh.dylib', 'libpetsc.3.016.1.dylib.dSYM', 'libegads.a', 'libmetis.dylib.dSYM', 'libTKGeomAlgo.dylib', 'libTKSTEPAttr.7.dylib', 'libparmetis.dylib.dSYM', 'libTKFeat.dylib', 'libexodus.2.0.dylib', 'libTKBool.7.5.0.dylib', 'exodus.py', 'libTKSTEPAttr.dylib', 'libTKBO.7.dylib', 'libpetsc.3.013.3.dylib', 'libTKXSBase.7.5.0.dylib', 'libTKSTEP.7.dylib', 'libparmetis.dylib', 'libpetsc.3.013.1.dylib', 'libTKXMesh.dylib', 'libsuplib_cpp.dylib', 'libtet.a', 'libTKG3d.7.5.0.dylib', 'exomerge.py', 'libexodus.2.0.dylib.dSYM', 'libpetsc.3.015.2.dylib.dSYM', 'libTKXSBase.dylib'] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char nccreate(); static void _check_nccreate() { nccreate(); } int main() { _check_nccreate();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicxx -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -Wl,-rpath,/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -L/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -lnetcdf -Wl,-rpath,/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -L/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -lpnetcdf -Wl,-rpath,/PETSc3/petsc/apple/lib -L/PETSc3/petsc/apple/lib -lhdf5_hl -lhdf5 -lz -lc++ -ldl Checking for optional headers [] in Download NETCDF: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Found header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking for headers ['netcdf.h'] in Download NETCDF: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['netcdf.h'] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking include with compiler flags var CXXPPFLAGS ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include', '/PETSc3/petsc/petsc-pylith/arch-master-debug/include', '/PETSc3/petsc/apple/include', '/PETSc3/petsc/apple/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicxx -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.opencascade -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include -I/PETSc3/petsc/apple/include -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.cc Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['netcdf.h'] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkVersion from config.packages.netcdf(config/BuildSystem/config/package.py:1071) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "netcdf_meta.h" petscpkgver(NC_VERSION_MAJOR.NC_VERSION_MINOR.NC_VERSION_PATCH); Executing: /PETSc3/petsc/apple/bin/mpicxx -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.opencascade -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.netcdf -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.netcdf/conftest.cc For netcdf need <= 4.5.0 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:996) By default we don't care about checking if the library is shared child config.packages.netcdf 1.171476 ============================================================================================= TESTING: consistencyChecks from config.packages.exodusii(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.exodusii(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:930) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional exodusii Looking for EXODUSII at git.exodusii, hg.exodusii or a directory starting with ['seacas'] Found a copy of EXODUSII in git.exodusii Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v2021-09-30^{commit}'] Executing: ['git', 'rev-parse', 'v2021-09-30'] stdout: cfb4dbb87957ad3f64efdeee105d43a9a701cde4 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing exodusii.petscconf Removing petsc-build/ Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', 'cfb4dbb87957ad3f64efdeee105d43a9a701cde4'] Detected Darwin/MacOSX Catalina OS Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 500 Detected CLANG compiler Makefile /PETSc3/petsc/petsc-pylith/arch-master-debug/lib/petsc/conf/pkg.conf.exodusii has correct checksum Commit file /PETSc3/petsc/petsc-pylith/arch-master-debug/lib/petsc/conf/pkg.gitcommit.exodusii has correct checksum Do not need to rebuild EXODUSII Checking for library in Download EXODUSII: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libexodus.a'] Contents of /PETSc3/petsc/petsc-pylith/arch-master-debug: ['obj', 'bin', 'SEACASProjRepoVersion.txt', 'include', 'tests', 'etc', 'lib', 'externalpackages', 'share'] Contents /PETSc3/petsc/petsc-pylith/arch-master-debug/lib: ['libTKBool.dylib', 'libml.a', 'libTKSTEPBase.7.dylib', 'libpetsc.3.014.4.dylib', 'libTKOffset.7.5.0.dylib', 'libTKIGES.7.dylib', 'libpnetcdf.dylib', 'libsuplib_c.dylib', 'libpetsc.3.015.0.dylib', 'libpetsc.3.016.1.dylib', 'libTKBRep.dylib', 'libpetsc.3.014.4.dylib.dSYM', 'libTKSTEP209.7.dylib', 'libpetsc.3.013.4.dylib.dSYM', 'libexodus.2.dylib', 'libTKMesh.7.dylib', 'libpetsc.3.015.1.dylib.dSYM', 'libsc.a', 'libpetsc.3.015.2.dylib', 'libTKSTEP.7.5.0.dylib', 'libTKG2d.7.dylib', 'libTKG3d.7.dylib', 'libnetcdf.la', 'libTKPrim.7.5.0.dylib', 'pkgconfig', 'libTKG3d.dylib', 'libTKSTEP209.7.5.0.dylib', 'libpetsc.3.014.dylib', 'libsc-2.0.dylib', 'libpetsc.3.014.2.dylib', 'libpetsc.3.015.4.dylib.dSYM', 'libnetcdf.dylib', 'libexoIIv2c.a', 'libpetsc.3.015.4.dylib', 'cmake', 'libpetsc.3.014.0.dylib', 'libTKXSBase.7.dylib', 'libpetsc.3.014.1.dylib.dSYM', 'libnetcdf.13.dylib.dSYM', 'libpetsc.3.013.1.dylib.dSYM', 'libp4est.dylib', 'libpetsc.3.016.dylib', 'libTKernel.dylib', 'libpetsc.3.015.3.dylib', 'libTKShHealing.dylib', 'libTKGeomBase.7.5.0.dylib', 'libTKTopAlgo.7.dylib', 'libpnetcdf.4.dylib.dSYM', 'libTKSTEP209.dylib', 'libsuplib_cpp.2.dylib', 'libpetsc.3.013.dylib', 'libTKIGES.dylib', 'libTKGeomBase.7.dylib', 'libpetsc.3.014.5.dylib', 'libpetsc.3.015.3.dylib.dSYM', 'libTKBRep.7.5.0.dylib', 'libpetsc.3.015.1.dylib', 'exodus2.py', 'libTKGeomBase.dylib', 'libpetsc.3.016.0.dylib', 'libTKSTEP.dylib', 'libTKGeomAlgo.7.5.0.dylib', 'libTKPrim.dylib', 'libtriangle.a', 'libexodus.a', 'libp4est-2.0.7-1727.dylib', 'libTKSTEPBase.dylib', 'exodus3.py', 'libTKBool.7.dylib', 'libpetsc.3.014.1.dylib', 'libTKOffset.7.dylib', 'libpetsc.3.014.3.dylib.dSYM', 'libpetsc.3.014.3.dylib', 'libpetsc.3.013.3.dylib.dSYM', 'libexodus.dylib', 'libTKBO.dylib', 'libpetsc.3.015.dylib', 'libTKSTEPAttr.7.5.0.dylib', 'libTKShHealing.7.dylib', 'libpetsc.3.016.0.dylib.dSYM', 'libTKIGES.7.5.0.dylib', 'libTKPrim.7.dylib', 'libTKFillet.7.dylib', 'libpnetcdf.la', 'libTKSTEPBase.7.5.0.dylib', 'libTKFeat.7.5.0.dylib', 'libnetcdf.settings', '.DIR', 'libTKFillet.7.5.0.dylib', 'exomerge2.py', 'libTKXMesh.7.5.0.dylib', 'libnetcdf.13.dylib', 'libTKTopAlgo.dylib', 'libTKHLR.7.5.0.dylib', 'libTKBRep.7.dylib', 'libpnetcdf.4.dylib', 'libTKFeat.7.dylib', 'libpetsc.3.014.0.dylib.dSYM', 'libTKTopAlgo.7.5.0.dylib', 'libpetsc.3.013.4.dylib', 'libpetsc.3.013.0.dylib.dSYM', 'libTKFillet.dylib', 'libmetis.dylib', 'libpetsc.3.013.0.dylib', 'libsc.dylib', 'libTKBO.7.5.0.dylib', 'libpetsc.3.014.5.dylib.dSYM', 'libctetgen.a', 'libnetcdf.a', 'libTKernel.7.5.0.dylib', 'libp4est.a', 'libegadslite.a', 'libTKHLR.dylib', 'libpetsc.3.015.0.dylib.dSYM', 'libTKernel.7.dylib', 'libpetsc.3.013.2.dylib', 'libTKG2d.dylib', 'libpnetcdf.a', 'exomerge3.py', 'libTKXMesh.7.dylib', 'petsc', 'libTKGeomAlgo.7.dylib', 'libsc.la', 'libsuplib_c.2.0.dylib', 'libTKHLR.7.dylib', 'libsuplib_c.2.dylib', 'libp4est.la', 'libTKMath.7.dylib', 'libTKOffset.dylib', 'libsuplib_cpp.2.0.dylib', 'libTKMath.7.5.0.dylib', 'libpetsc.3.014.2.dylib.dSYM', 'libTKMath.dylib', 'libTKShHealing.7.5.0.dylib', 'libpetsc.dylib', 'libpetsc.3.013.2.dylib.dSYM', 'libTKMesh.7.5.0.dylib', 'libchaco.a', 'libTKG2d.7.5.0.dylib', 'libTKMesh.dylib', 'libpetsc.3.016.1.dylib.dSYM', 'libegads.a', 'libmetis.dylib.dSYM', 'libTKGeomAlgo.dylib', 'libTKSTEPAttr.7.dylib', 'libparmetis.dylib.dSYM', 'libTKFeat.dylib', 'libexodus.2.0.dylib', 'libTKBool.7.5.0.dylib', 'exodus.py', 'libTKSTEPAttr.dylib', 'libTKBO.7.dylib', 'libpetsc.3.013.3.dylib', 'libTKXSBase.7.5.0.dylib', 'libTKSTEP.7.dylib', 'libparmetis.dylib', 'libpetsc.3.013.1.dylib', 'libTKXMesh.dylib', 'libsuplib_cpp.dylib', 'libtet.a', 'libTKG3d.7.5.0.dylib', 'exomerge.py', 'libexodus.2.0.dylib.dSYM', 'libpetsc.3.015.2.dylib.dSYM', 'libTKXSBase.dylib'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ex_close] in library ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libexodus.a'] ['/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libnetcdf.a', '/PETSc3/petsc/petsc-pylith/arch-master-debug/lib/libpnetcdf.a', '/PETSc3/petsc/apple/lib/libhdf5_hl.a', 'libhdf5.a', 'libz.a'] Checking directory of requested libraries:/PETSc3/petsc/petsc-pylith/arch-master-debug/lib for first library:libexodus. Files in directory:['libTKBool.dylib', 'libml.a', 'libTKSTEPBase.7.dylib', 'libpetsc.3.014.4.dylib', 'libTKOffset.7.5.0.dylib', 'libTKIGES.7.dylib', 'libpnetcdf.dylib', 'libsuplib_c.dylib', 'libpetsc.3.015.0.dylib', 'libpetsc.3.016.1.dylib', 'libTKBRep.dylib', 'libpetsc.3.014.4.dylib.dSYM', 'libTKSTEP209.7.dylib', 'libpetsc.3.013.4.dylib.dSYM', 'libexodus.2.dylib', 'libTKMesh.7.dylib', 'libpetsc.3.015.1.dylib.dSYM', 'libsc.a', 'libpetsc.3.015.2.dylib', 'libTKSTEP.7.5.0.dylib', 'libTKG2d.7.dylib', 'libTKG3d.7.dylib', 'libnetcdf.la', 'libTKPrim.7.5.0.dylib', 'pkgconfig', 'libTKG3d.dylib', 'libTKSTEP209.7.5.0.dylib', 'libpetsc.3.014.dylib', 'libsc-2.0.dylib', 'libpetsc.3.014.2.dylib', 'libpetsc.3.015.4.dylib.dSYM', 'libnetcdf.dylib', 'libexoIIv2c.a', 'libpetsc.3.015.4.dylib', 'cmake', 'libpetsc.3.014.0.dylib', 'libTKXSBase.7.dylib', 'libpetsc.3.014.1.dylib.dSYM', 'libnetcdf.13.dylib.dSYM', 'libpetsc.3.013.1.dylib.dSYM', 'libp4est.dylib', 'libpetsc.3.016.dylib', 'libTKernel.dylib', 'libpetsc.3.015.3.dylib', 'libTKShHealing.dylib', 'libTKGeomBase.7.5.0.dylib', 'libTKTopAlgo.7.dylib', 'libpnetcdf.4.dylib.dSYM', 'libTKSTEP209.dylib', 'libsuplib_cpp.2.dylib', 'libpetsc.3.013.dylib', 'libTKIGES.dylib', 'libTKGeomBase.7.dylib', 'libpetsc.3.014.5.dylib', 'libpetsc.3.015.3.dylib.dSYM', 'libTKBRep.7.5.0.dylib', 'libpetsc.3.015.1.dylib', 'exodus2.py', 'libTKGeomBase.dylib', 'libpetsc.3.016.0.dylib', 'libTKSTEP.dylib', 'libTKGeomAlgo.7.5.0.dylib', 'libTKPrim.dylib', 'libtriangle.a', 'libexodus.a', 'libp4est-2.0.7-1727.dylib', 'libTKSTEPBase.dylib', 'exodus3.py', 'libTKBool.7.dylib', 'libpetsc.3.014.1.dylib', 'libTKOffset.7.dylib', 'libpetsc.3.014.3.dylib.dSYM', 'libpetsc.3.014.3.dylib', 'libpetsc.3.013.3.dylib.dSYM', 'libexodus.dylib', 'libTKBO.dylib', 'libpetsc.3.015.dylib', 'libTKSTEPAttr.7.5.0.dylib', 'libTKShHealing.7.dylib', 'libpetsc.3.016.0.dylib.dSYM', 'libTKIGES.7.5.0.dylib', 'libTKPrim.7.dylib', 'libTKFillet.7.dylib', 'libpnetcdf.la', 'libTKSTEPBase.7.5.0.dylib', 'libTKFeat.7.5.0.dylib', 'libnetcdf.settings', '.DIR', 'libTKFillet.7.5.0.dylib', 'exomerge2.py', 'libTKXMesh.7.5.0.dylib', 'libnetcdf.13.dylib', 'libTKTopAlgo.dylib', 'libTKHLR.7.5.0.dylib', 'libTKBRep.7.dylib', 'libpnetcdf.4.dylib', 'libTKFeat.7.dylib', 'libpetsc.3.014.0.dylib.dSYM', 'libTKTopAlgo.7.5.0.dylib', 'libpetsc.3.013.4.dylib', 'libpetsc.3.013.0.dylib.dSYM', 'libTKFillet.dylib', 'libmetis.dylib', 'libpetsc.3.013.0.dylib', 'libsc.dylib', 'libTKBO.7.5.0.dylib', 'libpetsc.3.014.5.dylib.dSYM', 'libctetgen.a', 'libnetcdf.a', 'libTKernel.7.5.0.dylib', 'libp4est.a', 'libegadslite.a', 'libTKHLR.dylib', 'libpetsc.3.015.0.dylib.dSYM', 'libTKernel.7.dylib', 'libpetsc.3.013.2.dylib', 'libTKG2d.dylib', 'libpnetcdf.a', 'exomerge3.py', 'libTKXMesh.7.dylib', 'petsc', 'libTKGeomAlgo.7.dylib', 'libsc.la', 'libsuplib_c.2.0.dylib', 'libTKHLR.7.dylib', 'libsuplib_c.2.dylib', 'libp4est.la', 'libTKMath.7.dylib', 'libTKOffset.dylib', 'libsuplib_cpp.2.0.dylib', 'libTKMath.7.5.0.dylib', 'libpetsc.3.014.2.dylib.dSYM', 'libTKMath.dylib', 'libTKShHealing.7.5.0.dylib', 'libpetsc.dylib', 'libpetsc.3.013.2.dylib.dSYM', 'libTKMesh.7.5.0.dylib', 'libchaco.a', 'libTKG2d.7.5.0.dylib', 'libTKMesh.dylib', 'libpetsc.3.016.1.dylib.dSYM', 'libegads.a', 'libmetis.dylib.dSYM', 'libTKGeomAlgo.dylib', 'libTKSTEPAttr.7.dylib', 'libparmetis.dylib.dSYM', 'libTKFeat.dylib', 'libexodus.2.0.dylib', 'libTKBool.7.5.0.dylib', 'exodus.py', 'libTKSTEPAttr.dylib', 'libTKBO.7.dylib', 'libpetsc.3.013.3.dylib', 'libTKXSBase.7.5.0.dylib', 'libTKSTEP.7.dylib', 'libparmetis.dylib', 'libpetsc.3.013.1.dylib', 'libTKXMesh.dylib', 'libsuplib_cpp.dylib', 'libtet.a', 'libTKG3d.7.5.0.dylib', 'exomerge.py', 'libexodus.2.0.dylib.dSYM', 'libpetsc.3.015.2.dylib.dSYM', 'libTKXSBase.dylib'] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ex_close(); static void _check_ex_close() { ex_close(); } int main() { _check_ex_close();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -Wl,-rpath,/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -L/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -lexodus -Wl,-rpath,/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -L/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -lnetcdf -Wl,-rpath,/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -L/PETSc3/petsc/petsc-pylith/arch-master-debug/lib -lpnetcdf -Wl,-rpath,/PETSc3/petsc/apple/lib -L/PETSc3/petsc/apple/lib -lhdf5_hl -lhdf5 -lz -lc++ -ldl Checking for optional headers [] in Download EXODUSII: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Found header files [] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking for headers ['exodusII.h'] in Download EXODUSII: ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['exodusII.h'] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] Checking include with compiler flags var CPPFLAGS ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include', '/PETSc3/petsc/petsc-pylith/arch-master-debug/include', '/PETSc3/petsc/petsc-pylith/arch-master-debug/include', '/PETSc3/petsc/apple/include', '/PETSc3/petsc/apple/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.zlib -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.parmetis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.hdf5 -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pnetcdf -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include -I/PETSc3/petsc/petsc-pylith/arch-master-debug/include -I/PETSc3/petsc/apple/include -I/PETSc3/petsc/apple/include /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['exodusII.h'] in ['/PETSc3/petsc/petsc-pylith/arch-master-debug/include'] ============================================================================================= TESTING: checkVersion from config.packages.exodusii(config/BuildSystem/config/package.py:1071) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:996) By default we don't care about checking if the library is shared child config.packages.exodusii 2.068109 ============================================================================================= TESTING: consistencyChecks from config.packages.fblaslapack(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:1000) Called if --with-packagename=0; does nothing by default child config.packages.fblaslapack 0.001372 ============================================================================================= TESTING: consistencyChecks from config.packages.pthread(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.pthread(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:20) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:167) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c:4:6: warning: declaration of built-in function 'pthread_create' requires inclusion of the header [-Wbuiltin-requires-header] char pthread_create(); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lc++ -ldl Checking for optional headers [] in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.zlib -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.parmetis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.hdf5 -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pnetcdf -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['pthread.h'] in [] ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pthread/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pthread/conftest.c:6:1: error: use of undeclared identifier 'pthread_barrier_t' pthread_barrier_t *a; ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pthread/conftest.c:6:20: error: use of undeclared identifier 'a' pthread_barrier_t *a; ^ 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } ===== Checking compiler Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pthread/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pthread/conftest.c:6:1: error: use of undeclared identifier 'cpu_set_t' cpu_set_t *a; ^ /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pthread/conftest.c:6:12: error: use of undeclared identifier 'a' cpu_set_t *a; ^ 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /PETSc3/petsc/apple/bin/mpicc -E -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.zlib -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.parmetis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.hdf5 -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pnetcdf -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pthread /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pthread/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSCTL_H" to "1" ============================================================================================= TESTING: checkVersion from config.packages.pthread(config/BuildSystem/config/package.py:1071) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:996) By default we don't care about checking if the library is shared child config.packages.pthread 1.797261 ============================================================================================= TESTING: consistencyChecks from config.packages.egads(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.egads(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.egads(config/BuildSystem/config/packages/egads.py:183) Since egads cannot be built until after PETSc configure is complete we need to just assume the downloaded library will work Looking for EGADS at git.egads, hg.egads or a directory starting with ['egads'] Found a copy of EGADS in git.egads Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', '77798aeb67bf38054bfa7b3065e308d1b2914445^{commit}'] Executing: ['git', 'rev-parse', '77798aeb67bf38054bfa7b3065e308d1b2914445'] stdout: 77798aeb67bf38054bfa7b3065e308d1b2914445 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing EGADS/src/egadsAttrs.o Removing EGADS/src/egadsBase.o Removing EGADS/src/egadsCopy.o Removing EGADS/src/egadsExport.o Removing EGADS/src/egadsFit.o Removing EGADS/src/egadsGeom.o Removing EGADS/src/egadsHLevel.o Removing EGADS/src/egadsIO.o Removing EGADS/src/egadsMemory.o Removing EGADS/src/egadsQuads.o Removing EGADS/src/egadsRobust.o Removing EGADS/src/egadsSBO.o Removing EGADS/src/egadsSkinning.o Removing EGADS/src/egadsSolids.o Removing EGADS/src/egadsSpline.o Removing EGADS/src/egadsSplineFit.o Removing EGADS/src/egadsTess.o Removing EGADS/src/egadsTessInp.o Removing EGADS/src/egadsTessSens.o Removing EGADS/src/egadsTopo.o Removing EGADS/src/egadsTris.o Removing EGADS/src/prmCfit.o Removing EGADS/src/prmGrid.o Removing EGADS/src/prmUV.o Removing EGADS/util/emp.o Removing EGADS/util/evaluate.o Removing EGADS/util/rational.o Removing EGADS/util/regQuads.o Removing EGADSlite/src/egadsQuads_lite.o Removing EGADSlite/src/egadsRobust_lite.o Removing EGADSlite/src/egadsTessInp_lite.o Removing EGADSlite/src/egadsTess_lite.o Removing EGADSlite/src/egadsTris_lite.o Removing EGADSlite/src/emp_lite.o Removing EGADSlite/src/evaluate_lite.o Removing EGADSlite/src/limitTessBody_lite.o Removing EGADSlite/src/liteAttrs.o Removing EGADSlite/src/liteBase.o Removing EGADSlite/src/liteGeom.o Removing EGADSlite/src/liteImport.o Removing EGADSlite/src/liteMemory.o Removing EGADSlite/src/liteString.o Removing EGADSlite/src/liteTest.o Removing EGADSlite/src/liteTopo.o Removing EGADSlite/src/rational_lite.o Removing EGADSlite/src/regQuads_lite.o Removing EGADSlite/src/retessFaces_lite.o Removing libegads.a Removing libegadslite.a Removing make.inc Removing make_lite.inc Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '77798aeb67bf38054bfa7b3065e308d1b2914445'] ============================================================================================= TESTING: checkVersion from config.packages.egads(config/BuildSystem/config/package.py:1071) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.egads(config/BuildSystem/config/package.py:996) By default we don't care about checking if the library is shared child config.packages.egads 0.185617 ============================================================================================= TESTING: consistencyChecks from config.packages.PTScotch(config/BuildSystem/config/package.py:1004) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.PTScotch(config/BuildSystem/config/package.py:905) ============================================================================================= TESTING: configureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:930) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional PTScotch Looking for PTSCOTCH at git.ptscotch, hg.ptscotch or a directory starting with ['scotch', 'petsc-pkg-scotch'] Could not locate an existing copy of PTSCOTCH: ['netcdf-4.5.0', 'git.egads', 'git.metis', 'git.ctetgen', 'git.opencascade', 'git.p4est', 'git.ml', 'git.parmetis', 'git.exodusii', 'git.triangle', 'Chaco-2.2-p2', 'tetgen1.5.1', 'git.pnetcdf'] Downloading PTScotch ============================================================================================= Trying to download git://https://gitlab.inria.fr/scotch/scotch.git for PTSCOTCH ============================================================================================= install: Retrieving git://https://gitlab.inria.fr/scotch/scotch.git as git repo Executing: git clone --recursive https://gitlab.inria.fr/scotch/scotch.git /PETSc3/petsc/petsc-pylith/arch-master-debug/externalpackages/git.ptscotch Looking for PTSCOTCH at git.ptscotch, hg.ptscotch or a directory starting with ['scotch', 'petsc-pkg-scotch'] Found a copy of PTSCOTCH in git.ptscotch Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v6.1.1^{commit}'] Executing: ['git', 'rev-parse', 'v6.1.1'] stdout: 1603edaecec7baa809b583f4c0c21d94df6c44e2 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] Executing: ['git', 'checkout', '-f', '1603edaecec7baa809b583f4c0c21d94df6c44e2'] Creating PTScotch /PETSc3/petsc/petsc-pylith/arch-master-debug/externalpackages/git.ptscotch/src/Makefile.inc Checking for program /PETSc3/cig/bin/bison...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/bison...not found Checking for program /PETSc3/petsc/apple/bin/bison...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/bison...not found Checking for program /opt/local/bin/bison...not found Checking for program /opt/local/sbin/bison...not found Checking for program /usr/local/bin/bison...not found Checking for program /usr/bin/bison...found Defined make macro "BISON" to "/usr/bin/bison" Checking for program /PETSc3/cig/bin/flex...not found Checking for program /PETSc3/petsc/petsc-pylith/arch-pylith-debug/bin/flex...not found Checking for program /PETSc3/petsc/apple/bin/flex...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.8/bin/flex...not found Checking for program /opt/local/bin/flex...not found Checking for program /opt/local/sbin/flex...not found Checking for program /usr/local/bin/flex...not found Checking for program /usr/bin/flex...found Defined make macro "FLEX" to "/usr/bin/flex" Detected Darwin/MacOSX Catalina OS Executing: /PETSc3/petsc/apple/bin/mpicc --help | head -n 500 Detected CLANG compiler Checking for functions [timer_create] in library ['-lrt'] [] ===== Checking linker Executing: /PETSc3/petsc/apple/bin/mpicc -c -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilerFlags -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.setCompilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.closure -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.compilers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.headers -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.cacheDetails -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.types -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.getResidentSetSize -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.functions -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.featureTestMacros -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.utilities.missing -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.sharedLibraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/PETSc.options.scalarTypes -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.metis -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.MPI -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries -I/var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char timer_create(); static void _check_timer_create() { timer_create(); } int main() { _check_timer_create();; return 0; } Executing: /PETSc3/petsc/apple/bin/mpicc -o /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/config.libraries/conftest.o -lrt -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lrt clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lrt clang: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lrt clang: error: linker command failed with exit code 1 (use -v to see invocation): Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS PTSCOTCH was just downloaded, forcing a rebuild because cannot determine if package has changed ============================================================================================= Compiling PTScotch; this may take several minutes ============================================================================================= Executing: cd /PETSc3/petsc/petsc-pylith/arch-master-debug/externalpackages/git.ptscotch/src && make clean ptesmumps esmumps stdout: /bin/mkdir -p ../bin /bin/mkdir -p ../include /bin/mkdir -p ../lib (cd libscotch ; make clean) rm -f *~ *.o lib*.a parser_yy.c parser_ly.h parser_ll.c *scotch.h *scotchf.h y.output *dummysizes (cd scotch ; make clean) rm -f *~ *.o acpl amk_ccc amk_fft2 amk_grf amk_hy amk_m2 amk_p2 atst gbase gcv gdump *ggath *gmap gmk_hy gmk_m2 gmk_m3 gmk_msh gmk_ub2 gmtst *gord gotst gout *gpart *gscat *gtst mcv mmk_m2 mmk_m3 mord mtst (cd libscotchmetis ; make clean) rm -f *~ *.o lib*.a metis.h metisf.h parmetis.h (cd check ; make clean) rm -f *~ *.o (cd esmumps ; make clean) rm -f *~ common.h *.o lib*.a main_esmumps (cd libscotch ; make VERSION=6 RELEASE=1 PATCHLEVEL=1 scotch && make install) make \ CC="/PETSc3/petsc/apple/bin/mpicc" \ CCD="/PETSc3/petsc/apple/bin/mpicc" \ scotch.h \ scotchf.h \ libscotch.a \ libscotcherr.a \ libscotcherrexit.a /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch.c -o arch.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 dummysizes.c -o dummysizes -lz ./dummysizes "-s" library.h scotch.h ./dummysizes "-s" library_f.h scotchf.h /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_build.c -o arch_build.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_build2.c -o arch_build2.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_cmplt.c -o arch_cmplt.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_cmpltw.c -o arch_cmpltw.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_deco.c -o arch_deco.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_deco2.c -o arch_deco2.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_dist.c -o arch_dist.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_hcub.c -o arch_hcub.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_mesh.c -o arch_mesh.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_sub.c -o arch_sub.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_tleaf.c -o arch_tleaf.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_torus.c -o arch_torus.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_vcmplt.c -o arch_vcmplt.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_vhcub.c -o arch_vhcub.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph.c -o bgraph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_bd.c -o bgraph_bipart_bd.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_df.c -o bgraph_bipart_df.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_ex.c -o bgraph_bipart_ex.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_fm.c -o bgraph_bipart_fm.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_gg.c -o bgraph_bipart_gg.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_gp.c -o bgraph_bipart_gp.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_ml.c -o bgraph_bipart_ml.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_st.c -o bgraph_bipart_st.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_zr.c -o bgraph_bipart_zr.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_check.c -o bgraph_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_store.c -o bgraph_store.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common.c -DSCOTCH_COMMON_RENAME -o common.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common_file.c -DSCOTCH_COMMON_RENAME -o common_file.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common_file_compress.c -DSCOTCH_COMMON_RENAME -o common_file_compress.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common_file_decompress.c -DSCOTCH_COMMON_RENAME -o common_file_decompress.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common_integer.c -DSCOTCH_COMMON_RENAME -o common_integer.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common_memory.c -DSCOTCH_COMMON_RENAME -o common_memory.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common_string.c -DSCOTCH_COMMON_RENAME -o common_string.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common_stub.c -DSCOTCH_COMMON_RENAME -o common_stub.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common_thread.c -DSCOTCH_COMMON_RENAME -o common_thread.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c fibo.c -o fibo.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c gain.c -o gain.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c geom.c -o geom.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph.c -o graph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_base.c -o graph_base.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_band.c -o graph_band.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_check.c -o graph_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_clone.c -o graph_clone.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_coarsen.c -o graph_coarsen.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_diam.c -o graph_diam.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_dump.c -o graph_dump.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_ielo.c -o graph_ielo.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_induce.c -o graph_induce.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_io.c -o graph_io.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_io_chac.c -o graph_io_chac.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_io_habo.c -o graph_io_habo.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_io_mmkt.c -o graph_io_mmkt.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_io_scot.c -o graph_io_scot.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_list.c -o graph_list.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_match.c -o graph_match.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hall_order_hd.c -o hall_order_hd.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hall_order_hf.c -o hall_order_hf.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hall_order_hx.c -o hall_order_hx.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph.c -o hgraph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_check.c -o hgraph_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_dump.c -o hgraph_dump.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_induce.c -o hgraph_induce.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_bl.c -o hgraph_order_bl.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_cc.c -o hgraph_order_cc.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_cp.c -o hgraph_order_cp.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_gp.c -o hgraph_order_gp.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_hd.c -o hgraph_order_hd.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_hf.c -o hgraph_order_hf.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_hx.c -o hgraph_order_hx.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_kp.c -o hgraph_order_kp.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_nd.c -o hgraph_order_nd.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_si.c -o hgraph_order_si.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_st.c -o hgraph_order_st.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh.c -o hmesh.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_check.c -o hmesh_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_hgraph.c -o hmesh_hgraph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_induce.c -o hmesh_induce.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_mesh.c -o hmesh_mesh.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_bl.c -o hmesh_order_bl.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_cp.c -o hmesh_order_cp.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_gr.c -o hmesh_order_gr.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_gp.c -o hmesh_order_gp.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_hd.c -o hmesh_order_hd.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_hf.c -o hmesh_order_hf.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_hx.c -o hmesh_order_hx.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_nd.c -o hmesh_order_nd.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_si.c -o hmesh_order_si.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_st.c -o hmesh_order_st.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph.c -o kgraph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_band.c -o kgraph_band.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_check.c -o kgraph_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_bd.c -o kgraph_map_bd.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_cp.c -o kgraph_map_cp.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_df.c -o kgraph_map_df.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_ex.c -o kgraph_map_ex.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_fm.c -o kgraph_map_fm.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_ml.c -o kgraph_map_ml.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_rb.c -o kgraph_map_rb.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_rb_map.c -o kgraph_map_rb_map.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_rb_part.c -o kgraph_map_rb_part.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_st.c -o kgraph_map_st.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_store.c -o kgraph_store.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_arch.c -o library_arch.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_arch_f.c -o library_arch_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_arch_build.c -o library_arch_build.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_arch_build_f.c -o library_arch_build_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_arch_dom.c -o library_arch_dom.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_arch_dom_f.c -o library_arch_dom_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_common_f.c -o library_common_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_geom.c -o library_geom.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_geom_f.c -o library_geom_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph.c -o library_graph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_f.c -o library_graph_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_base.c -o library_graph_base.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_base_f.c -o library_graph_base_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_check.c -o library_graph_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_check_f.c -o library_graph_check_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_coarsen.c -o library_graph_coarsen.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_coarsen_f.c -o library_graph_coarsen_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_color.c -o library_graph_color.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_color_f.c -o library_graph_color_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_diam.c -o library_graph_diam.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_diam_f.c -o library_graph_diam_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_dump.c -o library_graph_dump.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_induce.c -o library_graph_induce.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_induce_f.c -o library_graph_induce_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_io_chac.c -o library_graph_io_chac.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_io_chac_f.c -o library_graph_io_chac_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_io_habo.c -o library_graph_io_habo.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_io_habo_f.c -o library_graph_io_habo_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_io_mmkt.c -o library_graph_io_mmkt.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_io_mmkt_f.c -o library_graph_io_mmkt_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_io_scot.c -o library_graph_io_scot.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_io_scot_f.c -o library_graph_io_scot_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_map.c -o library_graph_map.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_map_f.c -o library_graph_map_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_map_io.c -o library_graph_map_io.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_map_io_f.c -o library_graph_map_io_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_map_view.c -o library_graph_map_view.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_map_view_f.c -o library_graph_map_view_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_order.c -o library_graph_order.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_order_f.c -o library_graph_order_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_part_ovl.c -o library_graph_part_ovl.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_part_ovl_f.c -o library_graph_part_ovl_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mapping.c -o library_mapping.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_memory.c -o library_memory.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_memory_f.c -o library_memory_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh.c -o library_mesh.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_f.c -o library_mesh_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_graph.c -o library_mesh_graph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_graph_f.c -o library_mesh_graph_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_io_habo.c -o library_mesh_io_habo.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_io_habo_f.c -o library_mesh_io_habo_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_io_scot.c -o library_mesh_io_scot.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_io_scot_f.c -o library_mesh_io_scot_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_order.c -o library_mesh_order.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_order_f.c -o library_mesh_order_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_order.c -o library_order.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_parser.c -o library_parser.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_parser_f.c -o library_parser_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_random.c -o library_random.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_random_f.c -o library_random_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_strat.c -o library_strat.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_version.c -o library_version.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_version_f.c -o library_version_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mapping.c -o mapping.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mapping_io.c -o mapping_io.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mesh.c -o mesh.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mesh_check.c -o mesh_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mesh_coarsen.c -o mesh_coarsen.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mesh_graph.c -o mesh_graph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mesh_induce_sepa.c -o mesh_induce_sepa.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mesh_io.c -o mesh_io.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mesh_io_habo.c -o mesh_io_habo.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mesh_io_scot.c -o mesh_io_scot.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c order.c -o order.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c order_check.c -o order_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c order_io.c -o order_io.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 (/usr/bin/bison -y -d -v parser_yy.y && \ /bin/mv y.tab.c parser_yy.c && \ /bin/mv y.tab.h parser_ly.h) || \ /bin/cp last_resort/parser_ly.h last_resort/parser_yy.c . /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c parser.c -o parser.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 (/usr/bin/flex parser_ll.l && \ /bin/mv lex.yy.c parser_ll.c) || \ /bin/cp last_resort/parser_ll.c . /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c parser_ll.c -o parser_ll.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c parser_yy.c -o parser_yy.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph.c -o vgraph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_check.c -o vgraph_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_bd.c -o vgraph_separate_bd.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_df.c -o vgraph_separate_df.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_es.c -o vgraph_separate_es.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_fm.c -o vgraph_separate_fm.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_gg.c -o vgraph_separate_gg.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_gp.c -o vgraph_separate_gp.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_ml.c -o vgraph_separate_ml.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_st.c -o vgraph_separate_st.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_th.c -o vgraph_separate_th.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_vw.c -o vgraph_separate_vw.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_zr.c -o vgraph_separate_zr.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_store.c -o vgraph_store.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh.c -o vmesh.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh_check.c -o vmesh_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh_separate_fm.c -o vmesh_separate_fm.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh_separate_gg.c -o vmesh_separate_gg.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh_separate_gr.c -o vmesh_separate_gr.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh_separate_ml.c -o vmesh_separate_ml.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh_separate_zr.c -o vmesh_separate_zr.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh_separate_st.c -o vmesh_separate_st.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh_store.c -o vmesh_store.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph.c -o wgraph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_check.c -o wgraph_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_part_es.c -o wgraph_part_es.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_part_fm.c -o wgraph_part_fm.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_part_gg.c -o wgraph_part_gg.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_part_ml.c -o wgraph_part_ml.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_part_rb.c -o wgraph_part_rb.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_part_st.c -o wgraph_part_st.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_part_zr.c -o wgraph_part_zr.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_store.c -o wgraph_store.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /usr/bin/ar cr libscotch.a arch.o arch_build.o arch_build2.o arch_cmplt.o arch_cmpltw.o arch_deco.o arch_deco2.o arch_dist.o arch_hcub.o arch_mesh.o arch_sub.o arch_tleaf.o arch_torus.o arch_vcmplt.o arch_vhcub.o bgraph.o bgraph_bipart_bd.o bgraph_bipart_df.o bgraph_bipart_ex.o bgraph_bipart_fm.o bgraph_bipart_gg.o bgraph_bipart_gp.o bgraph_bipart_ml.o bgraph_bipart_st.o bgraph_bipart_zr.o bgraph_check.o bgraph_store.o common.o common_file.o common_file_compress.o common_file_decompress.o common_integer.o common_memory.o common_string.o common_stub.o common_thread.o fibo.o gain.o geom.o graph.o graph_base.o graph_band.o graph_check.o graph_clone.o graph_coarsen.o graph_diam.o graph_dump.o graph_ielo.o graph_induce.o graph_io.o graph_io_chac.o graph_io_habo.o graph_io_mmkt.o graph_io_scot.o graph_list.o graph_match.o hall_order_hd.o hall_order_hf.o hall_order_hx.o hgraph.o hgraph_check.o hgraph_dump.o hgraph_induce.o hgraph_order_bl.o hgraph_order_cc.o hgraph_order_cp.o hgraph_order_gp.o hgraph_order_hd.o hgraph_order_hf.o hgraph_order_hx.o hgraph_order_kp.o hgraph_order_nd.o hgraph_order_si.o hgraph_order_st.o hmesh.o hmesh_check.o hmesh_hgraph.o hmesh_induce.o hmesh_mesh.o hmesh_order_bl.o hmesh_order_cp.o hmesh_order_gr.o hmesh_order_gp.o hmesh_order_hd.o hmesh_order_hf.o hmesh_order_hx.o hmesh_order_nd.o hmesh_order_si.o hmesh_order_st.o kgraph.o kgraph_band.o kgraph_check.o kgraph_map_bd.o kgraph_map_cp.o kgraph_map_df.o kgraph_map_ex.o kgraph_map_fm.o kgraph_map_ml.o kgraph_map_rb.o kgraph_map_rb_map.o kgraph_map_rb_part.o kgraph_map_st.o kgraph_store.o library_arch.o library_arch_f.o library_arch_build.o library_arch_build_f.o library_arch_dom.o library_arch_dom_f.o library_common_f.o library_geom.o library_geom_f.o library_graph.o library_graph_f.o library_graph_base.o library_graph_base_f.o library_graph_check.o library_graph_check_f.o library_graph_coarsen.o library_graph_coarsen_f.o library_graph_color.o library_graph_color_f.o library_graph_diam.o library_graph_diam_f.o library_graph_dump.o library_graph_induce.o library_graph_induce_f.o library_graph_io_chac.o library_graph_io_chac_f.o library_graph_io_habo.o library_graph_io_habo_f.o library_graph_io_mmkt.o library_graph_io_mmkt_f.o library_graph_io_scot.o library_graph_io_scot_f.o library_graph_map.o library_graph_map_f.o library_graph_map_io.o library_graph_map_io_f.o library_graph_map_view.o library_graph_map_view_f.o library_graph_order.o library_graph_order_f.o library_graph_part_ovl.o library_graph_part_ovl_f.o library_mapping.o library_memory.o library_memory_f.o library_mesh.o library_mesh_f.o library_mesh_graph.o library_mesh_graph_f.o library_mesh_io_habo.o library_mesh_io_habo_f.o library_mesh_io_scot.o library_mesh_io_scot_f.o library_mesh_order.o library_mesh_order_f.o library_order.o library_parser.o library_parser_f.o library_random.o library_random_f.o library_strat.o library_version.o library_version_f.o mapping.o mapping_io.o mesh.o mesh_check.o mesh_coarsen.o mesh_graph.o mesh_induce_sepa.o mesh_io.o mesh_io_habo.o mesh_io_scot.o order.o order_check.o order_io.o parser.o parser_ll.o parser_yy.o vgraph.o vgraph_check.o vgraph_separate_bd.o vgraph_separate_df.o vgraph_separate_es.o vgraph_separate_fm.o vgraph_separate_gg.o vgraph_separate_gp.o vgraph_separate_ml.o vgraph_separate_st.o vgraph_separate_th.o vgraph_separate_vw.o vgraph_separate_zr.o vgraph_store.o vmesh.o vmesh_check.o vmesh_separate_fm.o vmesh_separate_gg.o vmesh_separate_gr.o vmesh_separate_ml.o vmesh_separate_zr.o vmesh_separate_st.o vmesh_store.o wgraph.o wgraph_check.o wgraph_part_es.o wgraph_part_fm.o wgraph_part_gg.o wgraph_part_ml.o wgraph_part_rb.o wgraph_part_st.o wgraph_part_zr.o wgraph_store.o /usr/bin/ranlib -c libscotch.a /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_error.c -o library_error.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /usr/bin/ar cr libscotcherr.a library_error.o /usr/bin/ranlib -c libscotcherr.a /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_error_exit.c -o library_error_exit.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /usr/bin/ar cr libscotcherrexit.a library_error_exit.o /usr/bin/ranlib -c libscotcherrexit.a /bin/cp scotch.h ../../include /bin/cp scotchf.h ../../include /bin/cp libscotch.a libscotcherr*.a ../../lib (cd scotch ; make VERSION=6 RELEASE=1 PATCHLEVEL=1 scotch && make install) make CC="/PETSc3/petsc/apple/bin/mpicc" SCOTCHLIB=scotch \ acpl \ amk_ccc \ amk_fft2 \ amk_grf \ amk_hy \ amk_m2 \ amk_p2 \ atst \ gbase \ gcv \ gdump \ gmap \ gmk_hy \ gmk_m2 \ gmk_m3 \ gmk_msh \ gmk_ub2 \ gmtst \ gord \ gotst \ gout \ gpart \ gscat \ gtst \ mcv \ mmk_m2 \ mmk_m3 \ mord \ mtst /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -I../../include -I../libscotch acpl.c -o acpl -L../../lib -lscotch -lscotch -lscotcherrexit -lz /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -I../../include -I../libscotch amk_ccc.c -o amk_ccc -L../../lib -lscotch -lscotch -lscotcherrexit -lz /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -I../../include -I../libscotch amk_fft2.c -o amk_fft2 -L../../lib -lscotch -lscotch -lscotcherrexit -lz /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -I../../include -I../libscotch amk_grf.c -o amk_grf -L../../lib -lscotch -lscotch -lscotcherrexit -lz **** Configure header /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_Alignx(a,b) #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_DO_NOT_SWAP_CHILD_FOR_DEBUGGER 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CLOSURE 1 #define PETSC_HAVE_CXXABI_H 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX_FIX 1 #define PETSC_HAVE_CXX_DIALECT_CXX03 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_CXX_DIALECT_CXX17 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPICH_NUMVERSION 30300101 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE MPIR_CVAR_CH3 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TETGEN_TETLIBRARY_NEEDED 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HDF5_HAVE_PARALLEL 1 #define PETSC_HDF5_HAVE_ZLIB 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_MAX_PATH_LEN 1024 #define PETSC_MEMALIGN 16 #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_PYTHON_EXE "/System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python" #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_DEBUGGER "lldb" #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_USING_DARWIN 1 #define PETSC_VERSION_BRANCH_GIT "knepley/feature-plex-multiple-hybrid" #define PETSC_VERSION_DATE_GIT "2021-11-18 15:56:44 -0500" #define PETSC_VERSION_GIT "v3.16.0-473-g546643b376b" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #endif **** C specific Configure header /var/folders/hk/tc1pd0g57l78rpt0lttc1sfh0000gn/T/petsc-8400lx/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Error running make on PTScotch: Could not execute "['cd /PETSc3/petsc/petsc-pylith/arch-master-debug/externalpackages/git.ptscotch/src && make clean ptesmumps esmumps']": /bin/mkdir -p ../bin /bin/mkdir -p ../include /bin/mkdir -p ../lib (cd libscotch ; make clean) rm -f *~ *.o lib*.a parser_yy.c parser_ly.h parser_ll.c *scotch.h *scotchf.h y.output *dummysizes (cd scotch ; make clean) rm -f *~ *.o acpl amk_ccc amk_fft2 amk_grf amk_hy amk_m2 amk_p2 atst gbase gcv gdump *ggath *gmap gmk_hy gmk_m2 gmk_m3 gmk_msh gmk_ub2 gmtst *gord gotst gout *gpart *gscat *gtst mcv mmk_m2 mmk_m3 mord mtst (cd libscotchmetis ; make clean) rm -f *~ *.o lib*.a metis.h metisf.h parmetis.h (cd check ; make clean) rm -f *~ *.o (cd esmumps ; make clean) rm -f *~ common.h *.o lib*.a main_esmumps (cd libscotch ; make VERSION=6 RELEASE=1 PATCHLEVEL=1 scotch && make install) make \ CC="/PETSc3/petsc/apple/bin/mpicc" \ CCD="/PETSc3/petsc/apple/bin/mpicc" \ scotch.h \ scotchf.h \ libscotch.a \ libscotcherr.a \ libscotcherrexit.a /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch.c -o arch.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 dummysizes.c -o dummysizes -lz ./dummysizes "-s" library.h scotch.h ./dummysizes "-s" library_f.h scotchf.h /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_build.c -o arch_build.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_build2.c -o arch_build2.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_cmplt.c -o arch_cmplt.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_cmpltw.c -o arch_cmpltw.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_deco.c -o arch_deco.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_deco2.c -o arch_deco2.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_dist.c -o arch_dist.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_hcub.c -o arch_hcub.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_mesh.c -o arch_mesh.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_sub.c -o arch_sub.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_tleaf.c -o arch_tleaf.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_torus.c -o arch_torus.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_vcmplt.c -o arch_vcmplt.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c arch_vhcub.c -o arch_vhcub.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph.c -o bgraph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_bd.c -o bgraph_bipart_bd.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_df.c -o bgraph_bipart_df.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_ex.c -o bgraph_bipart_ex.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_fm.c -o bgraph_bipart_fm.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_gg.c -o bgraph_bipart_gg.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_gp.c -o bgraph_bipart_gp.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_ml.c -o bgraph_bipart_ml.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_st.c -o bgraph_bipart_st.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_bipart_zr.c -o bgraph_bipart_zr.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_check.c -o bgraph_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c bgraph_store.c -o bgraph_store.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common.c -DSCOTCH_COMMON_RENAME -o common.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common_file.c -DSCOTCH_COMMON_RENAME -o common_file.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common_file_compress.c -DSCOTCH_COMMON_RENAME -o common_file_compress.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common_file_decompress.c -DSCOTCH_COMMON_RENAME -o common_file_decompress.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common_integer.c -DSCOTCH_COMMON_RENAME -o common_integer.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common_memory.c -DSCOTCH_COMMON_RENAME -o common_memory.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common_string.c -DSCOTCH_COMMON_RENAME -o common_string.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common_stub.c -DSCOTCH_COMMON_RENAME -o common_stub.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c common_thread.c -DSCOTCH_COMMON_RENAME -o common_thread.o /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c fibo.c -o fibo.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c gain.c -o gain.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c geom.c -o geom.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph.c -o graph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_base.c -o graph_base.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_band.c -o graph_band.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_check.c -o graph_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_clone.c -o graph_clone.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_coarsen.c -o graph_coarsen.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_diam.c -o graph_diam.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_dump.c -o graph_dump.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_ielo.c -o graph_ielo.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_induce.c -o graph_induce.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_io.c -o graph_io.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_io_chac.c -o graph_io_chac.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_io_habo.c -o graph_io_habo.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_io_mmkt.c -o graph_io_mmkt.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_io_scot.c -o graph_io_scot.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_list.c -o graph_list.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c graph_match.c -o graph_match.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hall_order_hd.c -o hall_order_hd.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hall_order_hf.c -o hall_order_hf.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hall_order_hx.c -o hall_order_hx.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph.c -o hgraph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_check.c -o hgraph_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_dump.c -o hgraph_dump.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_induce.c -o hgraph_induce.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_bl.c -o hgraph_order_bl.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_cc.c -o hgraph_order_cc.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_cp.c -o hgraph_order_cp.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_gp.c -o hgraph_order_gp.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_hd.c -o hgraph_order_hd.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_hf.c -o hgraph_order_hf.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_hx.c -o hgraph_order_hx.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_kp.c -o hgraph_order_kp.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_nd.c -o hgraph_order_nd.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_si.c -o hgraph_order_si.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hgraph_order_st.c -o hgraph_order_st.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh.c -o hmesh.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_check.c -o hmesh_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_hgraph.c -o hmesh_hgraph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_induce.c -o hmesh_induce.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_mesh.c -o hmesh_mesh.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_bl.c -o hmesh_order_bl.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_cp.c -o hmesh_order_cp.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_gr.c -o hmesh_order_gr.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_gp.c -o hmesh_order_gp.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_hd.c -o hmesh_order_hd.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_hf.c -o hmesh_order_hf.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_hx.c -o hmesh_order_hx.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_nd.c -o hmesh_order_nd.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_si.c -o hmesh_order_si.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c hmesh_order_st.c -o hmesh_order_st.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph.c -o kgraph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_band.c -o kgraph_band.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_check.c -o kgraph_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_bd.c -o kgraph_map_bd.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_cp.c -o kgraph_map_cp.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_df.c -o kgraph_map_df.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_ex.c -o kgraph_map_ex.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_fm.c -o kgraph_map_fm.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_ml.c -o kgraph_map_ml.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_rb.c -o kgraph_map_rb.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_rb_map.c -o kgraph_map_rb_map.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_rb_part.c -o kgraph_map_rb_part.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_map_st.c -o kgraph_map_st.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c kgraph_store.c -o kgraph_store.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_arch.c -o library_arch.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_arch_f.c -o library_arch_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_arch_build.c -o library_arch_build.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_arch_build_f.c -o library_arch_build_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_arch_dom.c -o library_arch_dom.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_arch_dom_f.c -o library_arch_dom_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_common_f.c -o library_common_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_geom.c -o library_geom.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_geom_f.c -o library_geom_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph.c -o library_graph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_f.c -o library_graph_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_base.c -o library_graph_base.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_base_f.c -o library_graph_base_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_check.c -o library_graph_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_check_f.c -o library_graph_check_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_coarsen.c -o library_graph_coarsen.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_coarsen_f.c -o library_graph_coarsen_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_color.c -o library_graph_color.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_color_f.c -o library_graph_color_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_diam.c -o library_graph_diam.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_diam_f.c -o library_graph_diam_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_dump.c -o library_graph_dump.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_induce.c -o library_graph_induce.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_induce_f.c -o library_graph_induce_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_io_chac.c -o library_graph_io_chac.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_io_chac_f.c -o library_graph_io_chac_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_io_habo.c -o library_graph_io_habo.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_io_habo_f.c -o library_graph_io_habo_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_io_mmkt.c -o library_graph_io_mmkt.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_io_mmkt_f.c -o library_graph_io_mmkt_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_io_scot.c -o library_graph_io_scot.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_io_scot_f.c -o library_graph_io_scot_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_map.c -o library_graph_map.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_map_f.c -o library_graph_map_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_map_io.c -o library_graph_map_io.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_map_io_f.c -o library_graph_map_io_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_map_view.c -o library_graph_map_view.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_map_view_f.c -o library_graph_map_view_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_order.c -o library_graph_order.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_order_f.c -o library_graph_order_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_part_ovl.c -o library_graph_part_ovl.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_graph_part_ovl_f.c -o library_graph_part_ovl_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mapping.c -o library_mapping.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_memory.c -o library_memory.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_memory_f.c -o library_memory_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh.c -o library_mesh.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_f.c -o library_mesh_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_graph.c -o library_mesh_graph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_graph_f.c -o library_mesh_graph_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_io_habo.c -o library_mesh_io_habo.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_io_habo_f.c -o library_mesh_io_habo_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_io_scot.c -o library_mesh_io_scot.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_io_scot_f.c -o library_mesh_io_scot_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_order.c -o library_mesh_order.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_mesh_order_f.c -o library_mesh_order_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_order.c -o library_order.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_parser.c -o library_parser.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_parser_f.c -o library_parser_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_random.c -o library_random.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_random_f.c -o library_random_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_strat.c -o library_strat.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_version.c -o library_version.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_version_f.c -o library_version_f.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mapping.c -o mapping.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mapping_io.c -o mapping_io.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mesh.c -o mesh.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mesh_check.c -o mesh_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mesh_coarsen.c -o mesh_coarsen.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mesh_graph.c -o mesh_graph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mesh_induce_sepa.c -o mesh_induce_sepa.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mesh_io.c -o mesh_io.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mesh_io_habo.c -o mesh_io_habo.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c mesh_io_scot.c -o mesh_io_scot.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c order.c -o order.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c order_check.c -o order_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c order_io.c -o order_io.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 (/usr/bin/bison -y -d -v parser_yy.y && \ /bin/mv y.tab.c parser_yy.c && \ /bin/mv y.tab.h parser_ly.h) || \ /bin/cp last_resort/parser_ly.h last_resort/parser_yy.c . /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c parser.c -o parser.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 (/usr/bin/flex parser_ll.l && \ /bin/mv lex.yy.c parser_ll.c) || \ /bin/cp last_resort/parser_ll.c . /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c parser_ll.c -o parser_ll.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c parser_yy.c -o parser_yy.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph.c -o vgraph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_check.c -o vgraph_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_bd.c -o vgraph_separate_bd.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_df.c -o vgraph_separate_df.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_es.c -o vgraph_separate_es.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_fm.c -o vgraph_separate_fm.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_gg.c -o vgraph_separate_gg.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_gp.c -o vgraph_separate_gp.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_ml.c -o vgraph_separate_ml.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_st.c -o vgraph_separate_st.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_th.c -o vgraph_separate_th.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_vw.c -o vgraph_separate_vw.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_separate_zr.c -o vgraph_separate_zr.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vgraph_store.c -o vgraph_store.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh.c -o vmesh.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh_check.c -o vmesh_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh_separate_fm.c -o vmesh_separate_fm.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh_separate_gg.c -o vmesh_separate_gg.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh_separate_gr.c -o vmesh_separate_gr.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh_separate_ml.c -o vmesh_separate_ml.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh_separate_zr.c -o vmesh_separate_zr.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh_separate_st.c -o vmesh_separate_st.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c vmesh_store.c -o vmesh_store.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph.c -o wgraph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_check.c -o wgraph_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_part_es.c -o wgraph_part_es.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_part_fm.c -o wgraph_part_fm.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_part_gg.c -o wgraph_part_gg.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_part_ml.c -o wgraph_part_ml.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_part_rb.c -o wgraph_part_rb.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_part_st.c -o wgraph_part_st.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_part_zr.c -o wgraph_part_zr.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c wgraph_store.c -o wgraph_store.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /usr/bin/ar cr libscotch.a arch.o arch_build.o arch_build2.o arch_cmplt.o arch_cmpltw.o arch_deco.o arch_deco2.o arch_dist.o arch_hcub.o arch_mesh.o arch_sub.o arch_tleaf.o arch_torus.o arch_vcmplt.o arch_vhcub.o bgraph.o bgraph_bipart_bd.o bgraph_bipart_df.o bgraph_bipart_ex.o bgraph_bipart_fm.o bgraph_bipart_gg.o bgraph_bipart_gp.o bgraph_bipart_ml.o bgraph_bipart_st.o bgraph_bipart_zr.o bgraph_check.o bgraph_store.o common.o common_file.o common_file_compress.o common_file_decompress.o common_integer.o common_memory.o common_string.o common_stub.o common_thread.o fibo.o gain.o geom.o graph.o graph_base.o graph_band.o graph_check.o graph_clone.o graph_coarsen.o graph_diam.o graph_dump.o graph_ielo.o graph_induce.o graph_io.o graph_io_chac.o graph_io_habo.o graph_io_mmkt.o graph_io_scot.o graph_list.o graph_match.o hall_order_hd.o hall_order_hf.o hall_order_hx.o hgraph.o hgraph_check.o hgraph_dump.o hgraph_induce.o hgraph_order_bl.o hgraph_order_cc.o hgraph_order_cp.o hgraph_order_gp.o hgraph_order_hd.o hgraph_order_hf.o hgraph_order_hx.o hgraph_order_kp.o hgraph_order_nd.o hgraph_order_si.o hgraph_order_st.o hmesh.o hmesh_check.o hmesh_hgraph.o hmesh_induce.o hmesh_mesh.o hmesh_order_bl.o hmesh_order_cp.o hmesh_order_gr.o hmesh_order_gp.o hmesh_order_hd.o hmesh_order_hf.o hmesh_order_hx.o hmesh_order_nd.o hmesh_order_si.o hmesh_order_st.o kgraph.o kgraph_band.o kgraph_check.o kgraph_map_bd.o kgraph_map_cp.o kgraph_map_df.o kgraph_map_ex.o kgraph_map_fm.o kgraph_map_ml.o kgraph_map_rb.o kgraph_map_rb_map.o kgraph_map_rb_part.o kgraph_map_st.o kgraph_store.o library_arch.o library_arch_f.o library_arch_build.o library_arch_build_f.o library_arch_dom.o library_arch_dom_f.o library_common_f.o library_geom.o library_geom_f.o library_graph.o library_graph_f.o library_graph_base.o library_graph_base_f.o library_graph_check.o library_graph_check_f.o library_graph_coarsen.o library_graph_coarsen_f.o library_graph_color.o library_graph_color_f.o library_graph_diam.o library_graph_diam_f.o library_graph_dump.o library_graph_induce.o library_graph_induce_f.o library_graph_io_chac.o library_graph_io_chac_f.o library_graph_io_habo.o library_graph_io_habo_f.o library_graph_io_mmkt.o library_graph_io_mmkt_f.o library_graph_io_scot.o library_graph_io_scot_f.o library_graph_map.o library_graph_map_f.o library_graph_map_io.o library_graph_map_io_f.o library_graph_map_view.o library_graph_map_view_f.o library_graph_order.o library_graph_order_f.o library_graph_part_ovl.o library_graph_part_ovl_f.o library_mapping.o library_memory.o library_memory_f.o library_mesh.o library_mesh_f.o library_mesh_graph.o library_mesh_graph_f.o library_mesh_io_habo.o library_mesh_io_habo_f.o library_mesh_io_scot.o library_mesh_io_scot_f.o library_mesh_order.o library_mesh_order_f.o library_order.o library_parser.o library_parser_f.o library_random.o library_random_f.o library_strat.o library_version.o library_version_f.o mapping.o mapping_io.o mesh.o mesh_check.o mesh_coarsen.o mesh_graph.o mesh_induce_sepa.o mesh_io.o mesh_io_habo.o mesh_io_scot.o order.o order_check.o order_io.o parser.o parser_ll.o parser_yy.o vgraph.o vgraph_check.o vgraph_separate_bd.o vgraph_separate_df.o vgraph_separate_es.o vgraph_separate_fm.o vgraph_separate_gg.o vgraph_separate_gp.o vgraph_separate_ml.o vgraph_separate_st.o vgraph_separate_th.o vgraph_separate_vw.o vgraph_separate_zr.o vgraph_store.o vmesh.o vmesh_check.o vmesh_separate_fm.o vmesh_separate_gg.o vmesh_separate_gr.o vmesh_separate_ml.o vmesh_separate_zr.o vmesh_separate_st.o vmesh_store.o wgraph.o wgraph_check.o wgraph_part_es.o wgraph_part_fm.o wgraph_part_gg.o wgraph_part_ml.o wgraph_part_rb.o wgraph_part_st.o wgraph_part_zr.o wgraph_store.o /usr/bin/ranlib -c libscotch.a /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_error.c -o library_error.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /usr/bin/ar cr libscotcherr.a library_error.o /usr/bin/ranlib -c libscotcherr.a /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -c library_error_exit.c -o library_error_exit.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=1 /usr/bin/ar cr libscotcherrexit.a library_error_exit.o /usr/bin/ranlib -c libscotcherrexit.a /bin/cp scotch.h ../../include /bin/cp scotchf.h ../../include /bin/cp libscotch.a libscotcherr*.a ../../lib (cd scotch ; make VERSION=6 RELEASE=1 PATCHLEVEL=1 scotch && make install) make CC="/PETSc3/petsc/apple/bin/mpicc" SCOTCHLIB=scotch \ acpl \ amk_ccc \ amk_fft2 \ amk_grf \ amk_hy \ amk_m2 \ amk_p2 \ atst \ gbase \ gcv \ gdump \ gmap \ gmk_hy \ gmk_m2 \ gmk_m3 \ gmk_msh \ gmk_ub2 \ gmtst \ gord \ gotst \ gout \ gpart \ gscat \ gtst \ mcv \ mmk_m2 \ mmk_m3 \ mord \ mtst /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -I../../include -I../libscotch acpl.c -o acpl -L../../lib -lscotch -lscotch -lscotcherrexit -lz /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -I../../include -I../libscotch amk_ccc.c -o amk_ccc -L../../lib -lscotch -lscotch -lscotcherrexit -lz /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -I../../include -I../libscotch amk_fft2.c -o amk_fft2 -L../../lib -lscotch -lscotch -lscotcherrexit -lz /PETSc3/petsc/apple/bin/mpicc -fPIC -fstack-protector -fno-stack-check -Qunused-arguments -g3 -O0 -Wno-implicit-function-declaration -I/PETSc3/petsc/apple/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_METIS_PREFIX -I../../include -I../libscotch amk_grf.c -o amk_grf -L../../lib -lscotch -lscotch -lscotcherrexit -lzparser.c:150:11: warning: enumeration value 'STRATNODENBR' not handled in switch [-Wswitch] switch (strat->type) { /* Recursively free sub-strategies */ ^ parser.c:150:11: note: add missing switch cases switch (strat->type) { /* Recursively free sub-strategies */ ^ parser.c:212:11: warning: enumeration value 'STRATNODENBR' not handled in switch [-Wswitch] switch (strat->type) { /* Recursively view sub-strategies */ ^ parser.c:212:11: note: add missing switch cases switch (strat->type) { /* Recursively view sub-strategies */ ^ parser.c:334:11: warning: enumeration value 'STRATTESTNBR' not handled in switch [-Wswitch] switch (test->typetest) { ^ parser.c:334:11: note: add missing switch cases switch (test->typetest) { ^ parser.c:543:11: warning: enumeration value 'STRATTESTNBR' not handled in switch [-Wswitch] switch (test->typetest) { ^ parser.c:543:11: note: add missing switch cases switch (test->typetest) { ^ parser.c:600:11: warning: enumeration value 'STRATTESTNBR' not handled in switch [-Wswitch] switch (test->typetest) { ^ parser.c:600:11: note: add missing switch cases switch (test->typetest) { ^ 5 warnings generated. vmesh_separate_fm.c:359:57: warning: for loop has empty body [-Wempty-body] for (hashmax = 256; hashmax < hashnbr; hashmax <<= 1) ; /* Get upper power of two */ ^ vmesh_separate_fm.c:359:57: note: put the semicolon on a separate line to silence this warning 1 warning generated. Undefined symbols for architecture x86_64: "__SCOTCHstratParserLex", referenced from: __SCOTCHstratParserParse2 in libscotch.a(parser_yy.o) "_scotchyylval", referenced from: _scotchyylex in libscotch.a(parser_ll.o) ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) make[2]: *** [amk_grf] Error 1 make[1]: *** [scotch] Error 2 make: *** [scotch] Error 2 ******************************************************************************* File "/PETSc3/petsc/petsc-pylith/config/configure.py", line 467, in petsc_configure framework.configure(out = sys.stdout) File "/PETSc3/petsc/petsc-pylith/config/BuildSystem/config/framework.py", line 1392, in configure self.processChildren() File "/PETSc3/petsc/petsc-pylith/config/BuildSystem/config/framework.py", line 1380, in processChildren self.serialEvaluation(self.childGraph) File "/PETSc3/petsc/petsc-pylith/config/BuildSystem/config/framework.py", line 1355, in serialEvaluation child.configure() File "/PETSc3/petsc/petsc-pylith/config/BuildSystem/config/package.py", line 1191, in configure self.executeTest(self.configureLibrary) File "/PETSc3/petsc/petsc-pylith/config/BuildSystem/config/base.py", line 138, in executeTest ret = test(*args,**kargs) File "/PETSc3/petsc/petsc-pylith/config/BuildSystem/config/package.py", line 937, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/PETSc3/petsc/petsc-pylith/config/BuildSystem/config/package.py", line 511, in generateGuesses d = self.checkDownload() File "/PETSc3/petsc/petsc-pylith/config/BuildSystem/config/package.py", line 645, in checkDownload return self.getInstallDir() File "/PETSc3/petsc/petsc-pylith/config/BuildSystem/config/package.py", line 407, in getInstallDir installDir = self.Install() File "/PETSc3/petsc/petsc-pylith/config/BuildSystem/config/packages/PTScotch.py", line 105, in Install raise RuntimeError('Error running make on PTScotch: '+str(e)) ================================================================================ Finishing configure run at Tue, 23 Nov 2021 11:56:52 -0500 ================================================================================