<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><br class=""><div><blockquote type="cite" class=""><div class="">On 12 Sep 2021, at 8:56 PM, Matthew Knepley <<a href="mailto:knepley@gmail.com" class="">knepley@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><div dir="ltr" class="">On Sun, Sep 12, 2021 at 2:49 PM Antonio T. sagitter <<a href="mailto:sagitter@fedoraproject.org" class="">sagitter@fedoraproject.org</a>> wrote:<br class=""></div><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Those attached are configure.log/make.log from a MPI build in Fedora 34 <br class="">
x86_64 where the error below occurred.<br class=""></blockquote><div class=""><br class=""></div><div class="">This is OpenMPI 4.1.0. Is that the only MPI you build? My first inclination is that this is an MPI implementation bug.</div><div class=""><br class=""></div><div class="">Junchao, do we have an OpenMPI build in the CI?</div></div></div></div></blockquote><div><br class=""></div><div>config/examples/arch-ci-linux-cuda-double-64idx.py: '--download-openmpi=1',</div><div><div>config/examples/arch-ci-linux-pkgs-dbg-ftn-interfaces.py: '--download-openmpi=1',</div><div>config/examples/arch-ci-linux-pkgs-opt.py: '--download-openmpi=1',</div></div><div><br class=""></div><div>config/BuildSystem/config/packages/OpenMPI.py uses version 4.1.0 as well.</div><div>I’m not sure PETSc is to blame here Antonio. You may want to try to ditch the OpenMPI shipped by your packet manager and try --download-openmpi as well, just for a quick sanity check.</div><div><br class=""></div><div>Thanks,</div><div>Pierre</div><br class=""><blockquote type="cite" class=""><div class=""><div dir="ltr" class=""><div class="gmail_quote"><div class=""> Thanks,</div><div class=""><br class=""></div><div class=""> Matt</div><div class=""> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
On 9/12/21 19:18, Antonio T. sagitter wrote:<br class="">
> Okay. I will try to set correctly the DATAFILESPATH options.<br class="">
> <br class="">
> I see even this error:<br class="">
> <br class="">
> not ok <br class="">
> vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create # <br class="">
> Error code: 68<br class="">
> <br class="">
> # PetscSF Object: 4 MPI processes<br class="">
> <br class="">
> # type: window<br class="">
> <br class="">
> # [0] Number of roots=3, leaves=2, remote ranks=2<br class="">
> <br class="">
> # [0] 0 <- (3,1)<br class="">
> <br class="">
> # [0] 1 <- (1,0)<br class="">
> <br class="">
> # [1] Number of roots=2, leaves=3, remote ranks=2<br class="">
> <br class="">
> # [1] 0 <- (0,1)<br class="">
> <br class="">
> # [1] 1 <- (2,0)<br class="">
> <br class="">
> # [1] 2 <- (0,2)<br class="">
> <br class="">
> # [2] Number of roots=2, leaves=3, remote ranks=3<br class="">
> <br class="">
> # [2] 0 <- (1,1)<br class="">
> <br class="">
> # [2] 1 <- (3,0)<br class="">
> <br class="">
> # [2] 2 <- (0,2)<br class="">
> <br class="">
> # [3] Number of roots=2, leaves=3, remote ranks=2<br class="">
> <br class="">
> # [3] 0 <- (2,1)<br class="">
> <br class="">
> # [3] 1 <- (0,0)<br class="">
> <br class="">
> # [3] 2 <- (0,2)<br class="">
> <br class="">
> # [0] Roots referenced by my leaves, by rank<br class="">
> <br class="">
> # [0] 1: 1 edges<br class="">
> <br class="">
> # [0] 1 <- 0<br class="">
> <br class="">
> # [0] 3: 1 edges<br class="">
> <br class="">
> # [0] 0 <- 1<br class="">
> <br class="">
> # [1] Roots referenced by my leaves, by rank<br class="">
> <br class="">
> # [1] 0: 2 edges<br class="">
> <br class="">
> # [1] 0 <- 1<br class="">
> <br class="">
> # [1] 2 <- 2<br class="">
> <br class="">
> # [1] 2: 1 edges<br class="">
> <br class="">
> # [1] 1 <- 0<br class="">
> <br class="">
> # [2] Roots referenced by my leaves, by rank<br class="">
> <br class="">
> # [2] 0: 1 edges<br class="">
> <br class="">
> # [2] 2 <- 2<br class="">
> <br class="">
> # [2] 1: 1 edges<br class="">
> <br class="">
> # [2] 0 <- 1<br class="">
> <br class="">
> # [2] 3: 1 edges<br class="">
> <br class="">
> # [2] 1 <- 0<br class="">
> <br class="">
> # [3] Roots referenced by my leaves, by rank<br class="">
> <br class="">
> # [3] 0: 2 edges<br class="">
> <br class="">
> # [3] 1 <- 0<br class="">
> <br class="">
> # [3] 2 <- 2<br class="">
> <br class="">
> # [3] 2: 1 edges<br class="">
> <br class="">
> # [3] 0 <- 1<br class="">
> <br class="">
> # current flavor=CREATE synchronization=FENCE MultiSF sort=rank-order<br class="">
> <br class="">
> # current info=MPI_INFO_NULL<br class="">
> <br class="">
> # [buildhw-x86-09:1135574] *** An error occurred in MPI_Accumulate<br class="">
> <br class="">
> # [buildhw-x86-09:1135574] *** reported by process [3562602497,3]<br class="">
> <br class="">
> # [buildhw-x86-09:1135574] *** on win rdma window 4<br class="">
> <br class="">
> # [buildhw-x86-09:1135574] *** MPI_ERR_RMA_RANGE: invalid RMA address <br class="">
> range<br class="">
> <br class="">
> # [buildhw-x86-09:1135574] *** MPI_ERRORS_ARE_FATAL (processes in <br class="">
> this win will now abort,<br class="">
> <br class="">
> # [buildhw-x86-09:1135574] *** and potentially your MPI job)<br class="">
> <br class="">
> # [<a href="http://buildhw-x86-09.iad2.fedoraproject.org:1135567" rel="noreferrer" target="_blank" class="">buildhw-x86-09.iad2.fedoraproject.org:1135567</a>] 3 more processes <br class="">
> have sent help message help-mpi-errors.txt / mpi_errors_are_fatal<br class="">
> <br class="">
> # [<a href="http://buildhw-x86-09.iad2.fedoraproject.org:1135567" rel="noreferrer" target="_blank" class="">buildhw-x86-09.iad2.fedoraproject.org:1135567</a>] Set MCA parameter <br class="">
> "orte_base_help_aggregate" to 0 to see all help / error messages<br class="">
> <br class="">
> Looks like an error related to OpenMPI-4*:<br class="">
> <a href="https://github.com/open-mpi/ompi/issues/6374" rel="noreferrer" target="_blank" class="">https://github.com/open-mpi/ompi/issues/6374</a><br class="">
> <br class="">
<br class="">
-- <br class="">
---<br class="">
Antonio Trande<br class="">
Fedora Project<br class="">
mailto: <a href="mailto:sagitter@fedoraproject.org" target="_blank" class="">sagitter@fedoraproject.org</a><br class="">
GPG key: 0x29FBC85D7A51CC2F<br class="">
GPG key server: <a href="https://keyserver1.pgp.com/" rel="noreferrer" target="_blank" class="">https://keyserver1.pgp.com/</a></blockquote></div><br clear="all" class=""><div class=""><br class=""></div>-- <br class=""><div dir="ltr" class="gmail_signature"><div dir="ltr" class=""><div class=""><div dir="ltr" class=""><div class=""><div dir="ltr" class=""><div class="">What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br class="">-- Norbert Wiener</div><div class=""><br class=""></div><div class=""><a href="http://www.cse.buffalo.edu/~knepley/" target="_blank" class="">https://www.cse.buffalo.edu/~knepley/</a><br class=""></div></div></div></div></div></div></div></div>
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