Executing: uname -s stdout: Linux ================================================================================ ================================================================================ Starting configure run at Mon, 07 Jun 2021 15:38:51 -0400 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-fc=mpifort --with-cc=mpicc --with-cxx=mpiCC --CFLAGS="-fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas" --CXXFLAGS="-fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas" --CUDAFLAGS="-g -Xcompiler -lineinfo" --FCFLAGS="-fPIC -g" --FCOPTFLAGS=-O0 --COPTFLAGS=-O0 --CXXOPTFLAGS=-O0 --with-ssl=0 --with-batch=0 --with-mpiexec="jsrun -g1" --with-cuda=1 --with-cudac=nvcc --with-cuda-gencodearch=70 --download-metis --download-parmetis --with-blaslapack-lib="-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack" --with-x=0 --with-64-bit-indices=0 --with-debugging=1 PETSC_ARCH=arch-summit-dbg-gnu-cuda Working directory: /gpfs/alpine/csc314/scratch/adams/petsc Machine platform: ('Linux', 'login1', '4.14.0-115.21.2.el7a.ppc64le', '#1 SMP Thu May 7 22:22:31 UTC 2020', 'ppc64le', 'ppc64le') Python version: 2.7.5 (default, Feb 26 2020, 09:25:01) [GCC 4.8.5 20150623 (Red Hat 4.8.5-36)] ================================================================================ Environmental variables LMOD_FAMILY_MPI=spectrum-mpi XL_LINKER=/sw/summit/xalt/1.2.1/bin/ld __LMOD_REF_COUNT_MODULEPATH=/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/spectrum-mpi/10.3.1.2-20200121-awz2q5b/gcc/6.4.0:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core:1;/sw/summit/modulefiles/core:1 LMOD_SETTARG_FULL_SUPPORT=no PAMI_IBV_ADAPTER_AFFINITY=1 CUDA_DIR=/sw/summit/cuda/10.1.243 SHELL=/bin/bash LMOD_MPI_VERSION=10.3.1.2-20200121-awz2q5b HISTSIZE=100 OLCF_FAMILY_MPI=spectrum-mpi MANPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/share/man:/sw/summit/gcc/6.4.0/share/man:/sw/summit/cuda/10.1.243/doc/man:/sw/sources/hpss/man:/sw/summit/lmod/8.2.10/share/man:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/man::/opt/puppetlabs/puppet/share/man XDG_RUNTIME_DIR=/run/user/62983 PYTHONPATH=/sw/summit/xalt/1.2.1/site:/sw/summit/xalt/1.2.1/libexec 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OMPI_MCA_io=romio321 __LMOD_REF_COUNT_MANPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/share/man:1;/sw/summit/gcc/6.4.0/share/man:1;/sw/summit/cuda/10.1.243/doc/man:1;/sw/sources/hpss/man:1;/sw/summit/lmod/8.2.10/share/man:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/man:1;/opt/puppetlabs/puppet/share/man:1 OLCF_NETLIB_LAPACK_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm OLCF_CUDA_ROOT=/sw/summit/cuda/10.1.243 LESSOPEN=||/usr/bin/lesspipe.sh %s LSF_BINDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin 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OLCF_SPECTRUM_MPI_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb CVS_RSH=ssh __LMOD_REF_COUNT_LD_LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib:1;/sw/summit/gcc/6.4.0/lib64:1;/sw/summit/cuda/10.1.243/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib:1 SHLVL=1 __LMOD_REF_COUNT_ACLOCAL_PATH=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/share/aclocal:1 DISPLAY=localhost:22.0 OLCF_FAMILY_COMPILER=gcc PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc OPAL_PREFIX=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb LMOD_FAMILY_MPI_VERSION=10.3.1.2-20200121 MODULESHOME=/sw/summit/lmod/8.2.10 XALT_ETC_DIR=/sw/summit/xalt/1.2.1/etc 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PKG_CONFIG_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/pkgconfig:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/pkgconfig BASH_ENV=/sw/summit/lmod/8.2.10/init/bash 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_LMFILES_=/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/hsi/5.0.2.p5.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/xalt/1.2.1.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/lsf-tools/2.0.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/darshan-runtime/3.1.7.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/DefApps.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cmake/3.20.2.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cuda/10.1.243:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/gcc/6.4.0.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0/spectrum-mpi/10.3.1.2-20200121.lua:/sw/summit/modulefiles/core/forge/20.0.1:/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/spectrum-mpi/10.3.1.2-20200121-awz2q5b/gcc/6.4.0/hdf5/1.10.4.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0/netlib-lapack/3.8.0.lua OMPI_CXX=g++ __LMOD_REF_COUNT_LOADEDMODULES=hsi/5.0.2.p5:1;xalt/1.2.1:1;lsf-tools/2.0:1;darshan-runtime/3.1.7:1;DefApps:1;cmake/3.20.2:1;cuda/10.1.243:1;gcc/6.4.0:1;spectrum-mpi/10.3.1.2-20200121:1;forge/20.0.1:1;hdf5/1.10.4:1;netlib-lapack/3.8.0:1 LMOD_DIR=/sw/summit/lmod/8.2.10/libexec GIT_PS1_SHOWDIRTYSTATE=1 PAMI_IBV_ENABLE_DCT=1 LMOD_PKG=/sw/summit/lmod/8.2.10 MODULEPATH_ROOT=/sw/summit/modulefiles HOME=/ccs/home/adams LD_LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib:/sw/summit/gcc/6.4.0/lib64:/sw/summit/cuda/10.1.243/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib LSF_SERVERDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc CUDAPATH=/sw/summit/cuda/10.1.243 LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib LMOD_SYSTEM_NAME=summit __LMOD_REF_COUNT__LMFILES_=/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/hsi/5.0.2.p5.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/xalt/1.2.1.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/lsf-tools/2.0.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/darshan-runtime/3.1.7.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/DefApps.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cmake/3.20.2.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cuda/10.1.243:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/gcc/6.4.0.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0/spectrum-mpi/10.3.1.2-20200121.lua:1;/sw/summit/modulefiles/core/forge/20.0.1:1;/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/spectrum-mpi/10.3.1.2-20200121-awz2q5b/gcc/6.4.0/hdf5/1.10.4.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0/netlib-lapack/3.8.0.lua:1 GIT_PS1_SHOWUPSTREAM=auto CUDA_TOOLKIT_ROOT_DIR=/sw/summit/cuda/10.1.243 _ModuleTable_Sz_=8 OLCF_MODULEPATH_ROOT=/sw/summit/modulefiles OMPI_CC=gcc __LMOD_REF_COUNT_CPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/include:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/include:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include:1;/sw/summit/cuda/10.1.243/include:1 LMOD_CMD=/sw/summit/lmod/8.2.10/libexec/lmod PROJWORK=/gpfs/alpine/proj-shared _ModuleTable005_=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 BASH_FUNC_module()=() { eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh) } XLSF_UIDDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib/uid OLCF_DARSHAN_RUNTIME_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43 OLCF_GCC_ROOT=/sw/summit/gcc/6.4.0 SSH_TTY=/dev/pts/66 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ACLOCAL_PATH=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/share/aclocal PATH=/sw/sources/lsf-tools/2.0/summit/bin:/sw/summit/xalt/1.2.1/bin:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin:/sw/summit/forge/20.0.1/bin:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin:/sw/summit/gcc/6.4.0/bin:/sw/summit/cuda/10.1.243/bin:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin:/sw/sources/hpss/bin:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin:/opt/ibm/csm/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibm/flightlog/bin:/opt/ibutils/bin:/opt/ibm/spectrum_mpi/jsm_pmix/bin:/opt/puppetlabs/bin:/usr/lpp/mmfs/bin TERM=xterm-256color CMAKE_PREFIX_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43 OPAL_LIBDIR=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib MEMBERWORK=/gpfs/alpine/scratch/adams LSF_LIBDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib OLCF_CMAKE_ROOT=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm _ModuleTable003_=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 XALT_OLCF=1 __LMOD_Priority_PATH=/sw/sources/lsf-tools/2.0/summit/bin:-9999;/sw/summit/xalt/1.2.1/bin:-9999 OMPI_DIR=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb OLCF_FAMILY_COMPILER_VERSION=6.4.0 BASH_FUNC_ml()=() { eval $($LMOD_DIR/ml_cmd "$@") } PAMI_IBV_QP_SERVICE_LEVEL=8 MPI_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb WORLDWORK=/gpfs/alpine/world-shared LMOD_sys=Linux LOADEDMODULES=hsi/5.0.2.p5:xalt/1.2.1:lsf-tools/2.0:darshan-runtime/3.1.7:DefApps:cmake/3.20.2:cuda/10.1.243:gcc/6.4.0:spectrum-mpi/10.3.1.2-20200121:forge/20.0.1:hdf5/1.10.4:netlib-lapack/3.8.0 LMOD_ROOT=/sw/summit/lmod HISTCONTROL=ignoredups PWD=/gpfs/alpine/csc314/scratch/adams/petsc _ModuleTable004_=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 BINARY_TYPE_HPC= OLCF_HSI_ROOT=/sw/sources/hpss Files in path provided by default path /sw/sources/lsf-tools/2.0/summit/bin: bsub bjob showusage test_bsub /sw/summit/xalt/1.2.1/bin: jsrun ld xalt_helper_functions.sh /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin: h5diff ph5diff h5ls h5dump h5pcc h5redeploy h5debug h5repart h5mkgrp h5clear h5import h5repack h5jam h5unjam h5copy h5format_convert h5stat h5perf_serial h5perf h5c++ h5pfc gif2h5 h52gif h5watch /sw/summit/forge/20.0.1/bin: ddt-debugger-mps ddt ddt-debugger allinea-client ddt-mpirun forge-probe forge make-profiler-libraries ddt-debugger-ll map ddt-client /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin: shmemrun profile2mat.pl oshrun oshmem_info orterun orted orte-server orte-info orte-clean ompi_info ompi-server ompi-clean mpitool mpirun mpijob mpiexec jumpshot get_nl_setting efix alias.pl aggregate_profile.pl stock shmemfort shmemcxx shmemcc shmemc++ shmemCC oshfort oshcxx oshcc oshc++ oshCC ortecc opal_wrapper mpixlf mpixlc mpixlC mpipgifort mpipgicc mpipgic++ mpifort mpif90 mpif77 mpicxx mpicc mpic++ mpiCC mpip-jsrun /sw/summit/gcc/6.4.0/bin: g++ c++ powerpc64le-none-linux-gnu-g++ powerpc64le-none-linux-gnu-c++ gfortran powerpc64le-none-linux-gnu-gfortran gcj powerpc64le-none-linux-gnu-gcj jcf-dump gcov gcov-tool gcov-dump cpp gcc powerpc64le-none-linux-gnu-gcc-6.4.0 gcc-ar powerpc64le-none-linux-gnu-gcc powerpc64le-none-linux-gnu-gcc-ar gcc-nm powerpc64le-none-linux-gnu-gcc-nm gcc-ranlib powerpc64le-none-linux-gnu-gcc-ranlib jv-convert gij grmic grmiregistry gcj-dbtool gappletviewer gjarsigner gkeytool gjar gcjh gjavah gnative2ascii gorbd grmid gserialver gtnameserv gc-analyze rebuild-gcj-db aot-compile /sw/summit/cuda/10.1.243/bin: cuobjdump cuda-gdb cuda-gdbserver gpu-library-advisor cuda-memcheck nsight nsight_ee_plugins_manage.sh nv-nsight-cu-cli bin2c crt cudafe++ fatbinary nvcc nvcc.profile nvlink ptxas nvdisasm nvprof nvprune computeprof nvvp cuda-install-samples-10.1.sh /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin: ccmake cmake ctest cpack /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin: darshan-mk-log-dirs.pl darshan-gen-cc.pl darshan-gen-cxx.pl darshan-gen-fortran.pl darshan-config /sw/sources/hpss/bin: htar 5.0.2.9 6.0.0.11 5.0.2.11 hsi 6.2.0.1 6.3 6.3.1 TA_Status test_TA /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc: esub esub.poe pim lsf_daemons rla elim.jsdl named esub.tv esub.openmp esub.mvapich esub.dprov sbatchd esub.bproc esub.openmpi esub.oldtvpoe esub.mpichp4 elim.frequency esub.tvlammpi esub.oldpoe lim esub.ls_dyna esub.tvmpich_gm esub.fluent nios esub.gold esub.mpich_gm esub.pvm esub.intelmpi esub.mpich_mx eauth.krb5 res tmp.elim.sa eauth esub.tvpoe mesub esub.mpich2 melim esub.lammpi /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin: brsvjob lspasswd bmgroup bpost btop bclusters lsplace bjdepinfo lsreghost brsvs bparams bgadd lsrun lsload breconfig lsfrestart bconf bmod bsub lsunlockhost bmodify bread bacct lsfrsv lsgrun bslots bapp bjobs lsmail lsfstartup lsmake4 lslockhost lsfshutdown bpeek lsrun.sh lslogin bimages bchkpnt bwait lsfhadoop.sh bsla brsvmod lsrtasks blimits busers bresources bqueues brequeue bmg lsrcp lseligible lshosts lsloadadj breboot lsacct lsclusters bugroup lsltasks lsadmin bstatus bgbroker bgdel bentags lsportcheck brsvsub lsf-start-spark.sh bqc bhpart lsf-spark-shell.sh lsmakerm lsf-spark-submit.sh brestart bswitch bjgroup lsreconfig lammpirun_wrapper lsf-stop-spark.sh badmin bbot bstop lsinfo brun bhist bhosts bgmod brsvadd bkill brlainfo brsvdel xagent bresize bmig lsmon lsid bgpinfo lsmake bresume blaunch lsacctmrg /opt/ibm/csm/bin: csm_bb_vg_create csm_node_find_job csm_cluster_query_state csm_allocation_create csm_ib_cable_update csm_allocation_query_active_all csm_bb_lv_delete csm_allocation_update_state csm_switch_attributes_update csm_soft_failure_recovery csm_diag_run_query csm_allocation_step_begin csm_bb_vg_delete csm_node_attributes_query_history csm_allocation_query_details csm_node_attributes_query_details csm_diag_run_query_details csm_ras_event_create csm_diag_run_begin csm_node_resources_query_all csm_allocation_query csm_ras_event_query_allocation csm_switch_attributes_query csm_node_attributes_query csm_switch_attributes_query_details csm_infrastructure_health_check csm_node_attributes_update csm_ras_msg_type_create csm_ras_msg_type_delete csm_ras_msg_type_query csm_node_query_state_history csm_switch_attributes_query_history csm_allocation_step_query_active_all csm_bb_lv_create csm_node_resources_query csm_allocation_delete csm_ras_event_query csm_allocation_resources_query csm_diag_result_create csm_node_delete csm_ras_msg_type_update csm_bb_vg_query csm_ib_cable_query_history csm_diag_run_end csm_allocation_step_query csm_allocation_step_query_details csm_allocation_update_history csm_allocation_step_end csm_ib_cable_query csm_jsrun_cmd csm_bb_lv_query /usr/local/bin: /usr/bin: sview strigger sstat sshare srun sreport squeue sprio smap sinfo sgather sdiag scontrol scancel sbcast sbatch sattach salloc sacctmgr sacct jobsub jobstat ctags diffstat rpmsign swig ccache-swig ocs cscope-indexer cscope doxygen unwrapdiff splitdiff rediff recountdiff lsdiff interdiff grepdiff flipdiff fixcvsdiff filterdiff espdiff editdiff dehtmldiff combinediff yacc byacc indent rlog rcsmerge rcsfreeze rcsdiff rcsclean rcs merge ident co ci svnversion svnsync svnserve svnrdump svnlook svndumpfilter svnadmin svn intltoolize intltool-update intltool-prepare intltool-merge intltool-extract gettextize autopoint stap-report stapsh staprun stap-merge stap-prep stap screen rhn_register whiptail subscription-manager rhsmcertd rhsm-debug rct consolehelper pyinotify easy_install-2.7 easy_install snmpwalk snmpvacm snmpusm snmptrap snmptranslate snmptls snmptest snmptable snmpstatus snmpset snmpnetstat snmpinform snmpgetnext snmpget snmpdf snmpdelta snmpbulkwalk snmpbulkget encode_keychange chardetect atopsar atopd atopconvert atop abrt-dump-oops abrt-action-save-kernel-data abrt-action-analyze-oops abrt-action-trim-files abrt-action-perform-ccpp-analysis abrt-action-list-dsos abrt-action-install-debuginfo abrt-action-generate-core-backtrace abrt-action-generate-backtrace abrt-action-analyze-vulnerability abrt-action-analyze-core abrt-action-analyze-ccpp-local abrt-action-analyze-c abrt-action-analyze-backtrace abrt-watch-log abrt-handle-upload abrt-action-save-package-data abrt-action-notify abrt-action-analyze-xorg reporter-ureport reporter-rhtsupport libtar satyr git git-receive-pack git-upload-archive git-upload-pack git-shell lex tset pk12util as lpr.cups speaker-test manpath hwloc-gather-topology hwloc-calc rev snmpconf sctp_darn trust nm fc-pattern ucs2any zforce groups gunzip tracepath rdma_xclient unalias db_upgrade dbus-uuidgen uuidgen uname df fc-match evim schemagen sessreg rdoc gdbus-codegen perl perl5.16.3 egrep mlxcables recode-sr-latin pkcheck GET rvim addr2line gsdj500 rpmbuild amixer unexpand ypchsh yppasswd ypchfn install cancel.cups msggrep mwm gcc-nm remunge ibgenperm thumbpdf nsenter clean-binary-files httpcfg mlnx_dump_parser ghci autoexpect ntpstat texluac dtestsrq lz4cat pkttyagent python2 pkla-admin-identities hpc tail size fc-query mkluatexfontdb dbus-cleanup-sockets nisdomainname ldapurl xsd startx crash mcdiff make gslp mktexfmt pmafm xdg-desktop-icon ldappasswd csh printenv vncconfig wqdump_ext gendiff mst_cable X mstvpd zmore db_hotbackup signver systemctl amsvis tbl xmessage servertool sn embedspu rview nohup grops geoipupdate xfd rm infotocap pwscore eu-objdump mysql mailq.postfix ptx systemd-loginctl mstop rxe_cfg ar ccrewrite diff-jars python pmsocks migspeed xmbind objcopy alias dos2unix ca-legacy tclsh ofed_rpm_info hwloc-assembler-remote vimtutor lprm pygtk-demo jjs prtstat seq col pdcp eu-strip ib_acme resourcedump dirname fc-cache-64 lesskey date basename grep geoiplookup6 ssh-copy-id xterm svcutil libpng-config dvilualatex db_load systemd-notify dracut texconfig haddock xrandr umount xdg-mime prlimit ucx_info infokey pstree.x11 mono-test-install write geqn xdg-screensaver glib-mkenums sudoedit mst ghc-pkg-7.6.3 wall dgawk ibv_polldcinfo ppc64le-redhat-linux-gcc gcc xzcat simpdftex cvsbug pdflatex mlxburn ping column fc-cache pinentry-curses pmlogextract scp stdbuf mlxcables_ext renice file raw_ethernet_bw msguniq appletviewer pdf2dsc mlxpci dig gem coredumpctl eu-size conjure mlnx_conf_mgr.sh alsaunmute command cd sha1sum xsltproc hp2ps erb update-desktop-database gtk-update-icon-cache crontab icewm mktexmf whoami ttmkfdir uxterm ucx_perftest ibcongest mlnx_perf funzip ghc pkg-config nvidia-persistenced unzipsfx bootctl fc-conflist pango-querymodules-64 splain curl arch xinit pfbtopfa mozroots setsid setterm gr2fonttest wqdump gzexe gtk-launch compare aseqdump cc nvidia-debugdump icesh udevadm lc icehelp gvimdiff taskset xml2-config pkill bzmore mogrify systemd-analyze mkdir lpq.cups libpng15-config mc repstopdf ld ld.bfd systemd-sysv-convert nproc dbpmda cksum psed s2p msghack tabs systemd-coredumpctl jmap libtoolize etags.emacs gtester pmie fg ps2pdfwr peekfd ib_atomic_bw preconv dtestx aria_dump_log gpg-error pmtrace allec post-grohtml tree net-snmp-create-v3-user bunzip2 zcat xzless lscpu xzmore udaddy alsamixer find2perl dtestcm iconv rpm2cpio desktop-file-edit ps2pdf13 ldapexop hwloc-assembler rpmquery ibv_umr chown pdsh gcc-ar pdb2mdb unshare db_replicate nsupdate cpio xmvn-builddep comm dbus-monitor automake-1.13 automake eu-stack runghc-7.6.3 xgettext chsh eqn gdb lualatex cpupower build-jar-repository gacutil2 gawk rftp kpsewhere c99 nvidia-smi reset xdg-open zip split mlx_fpga_ext catchsegv ghc-7.6.3 keytool aria_chk mlxreg mstregdump alsaucm mlxlink rename chktrust true db_recover mktexlsr xpr skill otflist gfortran gtroff uil jvmjar zgrep elfedit xclipboard passwd prove eu-nm openssl su kibitz kpsestat pgrep printf gtbl ib_read_lat zipdetails gtar jarsigner mysql_find_rows fold gconf-merge-tree munge ln tty uuclient stat chfn find-jar wish pmdiff mkocp lchsh jconsole luit diff rpmdb gcore rsync fc-list dmesg libtool mkfontscale zsoelim mstmcra pod2usage xjc uptime dump2slvl.pl ldapwhoami testrb alsatplg setarch dbus-test-tool msgfmt alsa-delay gview texconfig-dialog ps2pdf14 cairo-sphinx sctp_test ps2epsi pmlogconf dwz amidi updmap-sys compile_et man cmp hostnamectl dd tmon vdir pldd sctp_status iceauth getfacl xrdb runhaskell-ghc udpong hwloc-distances sh db_stat ib_write_bw fmt fc-validate mcs ibv_cc_pingpong base64 ibv_devinfo ibv_xsrq_pingpong mlxreg_ext sqlite3 ps2ps2 dapltest tar head ps2pdf ri serialver script pstree msgcomm finger fallocate xzdec whatis gencat perlthanks perlbug xconsole xclock wsdl mlxtrace aclocal aclocal-1.13 red readlink unix2mac vim zegrep certutil hwloc-info xinput hwloc-distrib gzip ypcat localedef emacs pmlogsummary mlnx_interface_mgr.sh mysql_config gpgsplit zipinfo unzip updatedb idn systemd-run pwd mailx xzdiff db_dump185 wish8.5 ibv_devices ls mcedit iptables-xml db_dump unlz4 xdg-icon-resource arecord kernel-install otftobdf sqlmetal mysqlslap lp dbus-run-session xcursorgen mremote gsbj ldapadd unpigz pigz ed gss-client ibdiagm.sh m4 systemd-path kpsetool cal raw_ethernet_burst_lat mpi-selector lprsetup.sh rvi mono xrefresh zipsplit lp.cups batch mysqladmin ib_write_lat ldapcompare lprm.cups which msginit oldfind toe unlink lz4c ppc64le-redhat-linux-g++ c++ g++ ppc64le-redhat-linux-c++ montage ghostscript diff3 run-singularity dcgmi ibdiagpath pmfind free ghc-doc-index gpg-zip tcsh mconfig gpgv2 jdb pmpython allneeded icewmhint pinky rmid ebrowse lsblk xmlwf memhog ruby eu-findtextrel dislocate vncviewer less ibdev2netdev lsmem systemd-ask-password kpsereadlink lstopo-no-graphics bzcat python2-config cat ngettext gtk-query-immodules-3.0-64 apropos dimax_init icewmtray linux64 mstcongestion gdb-add-index who dviluatex xwud pstack ldapmodrdn bzgrep ucx_read_profile ionice bison rmic mktexpk ppc32 ranlib jhat slabtop x11perf systemd-cgtop wait catman xauth systemd-cat cancel bg env xkill pmlc numactl tnameserv pmdbg at convert Xvnc flint_ext strings soapsuds gstack msgcmp mkofm ssh-keygen sdiff HEAD ib_send_lat mkfontdir pgawk mysqlbinlog lppasswd dbus-daemon emacs-24.3 nroff locate setup-nsssysinit.sh igawk mlx_fs_dump gsdj tic lsinitrd weather gcov mono-boehm patch sudo ib_read_bw info dump2psl.pl xsetmode jrunscript kdumpctl lslocks gnroff shuf vmstat latex lslogins lua flex++ ssh-keyscan mlxtrace_ext msgattrib signtool rpmverify getent pmieconf ssh-agent xdg-desktop-menu ibdmchk ibnetsplit link gpg-agent pmlogcheck mlxlink_ext dbus-update-activation-environment bc nice raw mlxgearbox pmevent riostream wftopfa aserver mget_temp javadoc unxz ib_send_bw cpp desktop-file-install checksctp ucmatose gpg jsadebugd kpsewhich aria_read_log whereis systemd-tty-ask-password-agent pmerr mysqldump mstfwtrace java dvi2fax ibv_intf tzselect ibv_dctgt fmtutil gsoelim chmem ssh mstmtserver wsdl2 pmdate modutil vncserver pmval pmstore systemd-stdio-bridge paste xdg-email POST pod2text gacutil setpriv mandb lsattr tracepath6 xwd rdma_server desktop-file-validate mget_temp_ext nvidia-modprobe truncate numfmt mlnx_qos xbiff ppc64 lwp-request xgamma rmail mkfifo luac hsc2hs-ghc texconfig-sys systemd-detect-virt secon rebuild-jar-repository sim_client h2ph pminfo f95 bashbug-64 mktemp gneqn sum unbuffer newgrp mlxfwmanager allcm usleep etags ikdasm mac2unix sha384sum wsimport hwloc-patch ofed_info cvtsudoers krb5-config mstfwreset pdfetex dir sprof run_perftest_multi_devices cp ypwhich xset jstack sxpm pmclient chattr run-parts mstconfig gapplication extcheck mlxvpd ghc-pkg eu-elfcompress fribidi fc x11perfcomp logger watchgnupg dtest xeyes csslint-0.6 timeout makedb ibdump chcon aconnect ib_atomic_lat stream icewm-xdg-menu runhaskell msgunfmt lexgrog lsipc expect bashbug xz fmtutil-sys gettext.sh glib-compile-schemas pmstat javah ipcmk pstruct c2ph mtserver luatex cert-sync mlxmdio rdma_xserver pmlogger mountpoint eu-ranlib rmdir hostname pmap ipcalc zipnote lwp-dump pdf2ps gpasswd animate zsh python-config db_deadlock vpi_tcpdump jcmd migratepages resize showrgb captoinfo pax rstream jps ps systemd-cgls db_tuner systemd-inhibit [ ul snice rpmspec wc pod2html timed-read ibdiagnet lwp-download haddock-ghc-7.6.3 cmsutil updmap xvidtune last mlxprivhost top pmdumplog scriptreplay urlgrabber mstprivhost quotasync chgrp touch neqn fc-cat xmag msgen pack200 mount md5sum sudoreplay ps2ps gmake autom4te dircolors sha256sum pre-grohtml tsort getconf eu-elflint texlua db_log_verify fc-scan getopt pmie2col vi tload ibv_task_pingpong atrm gettext dc db_archive rdma_client xorg-x11-fonts-update-dirs fonttosfnt etex pf2afm aplaymidi mcookie jar nslookup setxkbmap ipmitool mlxdump hwloc-ls realpath ps2ascii ksh mlxmcg pdftex lpstat read dbus-send perldoc pkcs1-conv jdeps jstatd kpsexpand lwp-mirror mailq gnuplot kpsepath sort grep-changelog fgrep eu-readelf numastat shcomp sync flock timed-run cvt rpm composite autoheader setfacl db_printlog db_verify zcmp expand kpseaccess xmllint csplit bdftopcf ypdomainname soelim podselect kmod mono-heapviz alsaloop pmlogmv cut nvidia-bug-report.sh xzgrep pinentry lpstat.cups eu-ar dvired nettle-lfib-stream jinfo c89 mono-service runghc hwloc-bind gtf journalctl dbus-binding-tool check-binary-files hwloc-compress-dir icewm-set-gnomewm perf lpoptions msgconv printafm lpr tput keyctl ex bzless sha512sum withsctp ssh-add mesg findmnt gpgconf host agentxtrap umask raw_ethernet_fs_rate fipshmac gdbus mono-sgen-gdb.py gtester-report ibv_dcini lesspipe.sh mysqlshow piconv xload gtk-query-immodules-2.0-64 rmail.postfix dshbak localectl ipcs gex locale db_checkpoint i2c ldd gs arecordmidi msql2mysql autoupdate find chmod amsstat eu-addr2line rpcgen c++filt sndfile-resample hwloc-ps look ibdmtr genpmda curl-config pmprobe rksh pod2man xzcmp mlxfwreset zipgrep utmpdump more gdk-pixbuf-query-loaders-64 tc_wrap.py rmiregistry gpg-connect-agent xfontsel gsnd xkbcomp mprof-report mktextfm namei gsettings numademo mpi-selector-menu view icewmbg gcc-ranlib hesinfo cvs pckt_drop gnuplot-wx objdump mckey chrt unix-lpr.sh nail mlnx_qcn sss_ssh_knownhostsproxy ibv_uc_pingpong envsubst ghci-7.6.3 mkinitrd autoconf eu-unstrip mysqlcheck ipcrm pango-list lsns loginctl otfdump hwloc-diff mysql_waitpid uniq nvidia-xconfig gvimtutor setup-nsssysinit dvipdf wdctl tee killall cabal mcview ldapsearch sg flex runcon xzegrep gpg2 identify tac colcrt pmgenmap font2c nvidia-cuda-mps-server unpack200 readelf mlxi2c hexdump ssltap ibtopodiff cxpm msgcat update-mime-database singularity pmloglabel mono-sgen xcutsel irb pmjson login factor linux32 machinectl lsb_release vimx gio wget troff busctl lastb pmclient_fg native2ascii mono-service2 ibv_srq_pingpong mknod strace sexp-conv time gio-querymodules-64 Mail du dconf mlnx_get_vfs.pl domainname alsabat systemd-tmpfiles strace-log-merge ibv_rc_pingpong python2.7 sleep cmtime pwdx lpunlock eject mdevices_info ifnames sha224sum koi8rxterm sed getopts xlogo mlxuptime newaliases.postfix aseqnet systemd-firstboot xargs nettle-hash python2.7-config ncursesw5-config pcre-config qperf eu-make-debug-archive newaliases chage build-classpath mysqlaccess bzdiff isosize mstmwrite expr pwmake systemd-escape ncurses5-config xsetroot ibnlparse lstopo lessecho autoreconf gslj orbd clear gctags vncpasswd icewm-session atq mysqlimport rpmkeys xxd xhost ibv_asyncwatch wsgen sotruss mstflint run_perftest_loopback watch net-snmp-config msgfilter systemd-hwdb lastlog slogin gconftool-2 ldapdelete test mst_ib_add pkexec zipcloak rsyslog-recover-qi.pl pkaction unix2dos groff shred itrace xmlcatalog texhash systemd-machine-id-setup flint ibdiagnet_csv2xml.py iecset hwloc-annotate eps2eps autoscan grotty colrm bash glib-gettextize yes lz4 epstopdf gpgparsemail spax pr kill bzcmp mlxdump_ext ypmatch ibv_ud_pingpong aria_ftdump w logname ksh93 od xmodmap gpic pmlogsize p11-kit systemd-nspawn m17n-conv bzip2 timedatectl gresource rping infocmp unmunge nl users minit idlj xstdcmap msgmerge a2p csharp mft_uninstall.sh testgdbm gdk-pixbuf-thumbnailer hsc2hs lpq glib-genmarshal tailf quota hca_self_test.ofed id stty update-ca-trust mlxconfig setreg xzfgrep mv fipscheck ftp-rfc disco sqlsharp join xsetpointer ppc rlogin-cwd vimdiff lchfn tr chacl echo netstat texlinks pkla-check-authorization display strip xdg-settings rpdcp mstdump mkpasswd ping6 mlxphyburn pydoc ps2pdf12 jstat gpgv eu-strings pphs eu-elfcmp jobs zfgrep systemd-delta update-gtk-immodules glib-compile-resources gsettings-data-convert pic mlx_fpga dotlockfile gobject-query redhat_lsb_init Xorg import sftp emacsclient raw_ethernet_lat zless aria_pack msgexec false crlutil nvidia-cuda-mps-control oclock dnsdomainname javac pcp mail fwtrace xdpr awk tclsh8.5 gprof xkibitz my_print_defaults rcopy passmass pod2latex freetype-config bzip2recover bdftruncate x0vncserver yum abs2rel geoiplookup pcp2csv build-classpath-directory otfview znew mstmread aplay gvim nvvs ldapmodify nv-hostengine pl2pm javap pango-view ibsim sss_ssh_authorizedkeys hostid create-jar-links mcra zdiff pathchk /usr/local/sbin: /usr/sbin: rhnsd rhn_check spacewalk-channel rhnreg_ks rhn_register rhn-channel rhn-profile-sync subscription-manager userhelper pifconfig pethtool virt-what abrt-install-ccpp-hook abrt-dbus abrt-configuration abrtd abrt-server abrt-auto-reporting vgcfgrestore selabel_digest resize2fs luserdel bootlist fdisk thin_trim e4defrag tracepath pwhistory_helper mkdumprd mke2fs mkfs.ext2 mkfs.ext3 mkfs.ext4 badblocks mii-diag lpc lgroupmod rpc.statd lsdevinfo ibfindnodesusing.pl ifup alsa-info ibdiscover.pl load_policy rtcwake thin_repair usermod xfs_freeze lvs xfs_mdrestore plipconfig groupmod fsck.xfs lsvpd unix_update readprofile vgreduce losetup sshd-keygen update-alternatives rtas_event_decode selabel_lookup_best_match cracklib-check ntptime partx agetty pvdisplay vmcore-dmesg show_irq_affinity_hints.sh mlnx_net_rules kexec cracklib-unpacker lsprop thin_dump alternatives vendor_pre_uninstall.sh yppoll swaplabel lvchange blockdev ibdatacounts dracut useradd zdump alsa-info.sh lparstat ctrlaltdel smpdump ss swapoff swapon zic ipmaddr sys-unconfig sldd.sh iconvconfig.ppc64le iconvconfig tcsd ibhosts dmsetup lid chcpu cache_dump ibchecknode ibroute depmod vgremove pseries_platform nvme getpcaps ppp-watch lscfg cache_repair xfs_logprint postlock serv_config dumpe2fs nvram udevadm parted lsmod tc ntpdate sestatus fsck.minix rpcinfo pmc groupmems srp_daemon.sh iptables-restore pwunconv routel postqueue ls-vdev lpasswd sysctl e2freefrag dmstats capsh sendmail xfs_db pam_timestamp_check chpasswd lvdisplay hwstamp_ctl lnewusers zramctl yptest quotacheck ibdatacounters lvcreate mkdict vgmknodes iptables-save fixfiles set_irq_affinity_cpulist.sh lspci xtables-multi blkdeactivate postlog fsck lsslot xfs_quota rdisc update_flash_nv srp_daemon bridge saquery ibswitches addpart smpquery sss_cache clockdiff ntpdc ypset runlevel sssd build-locale-archive ntpd nfsidmap ipmievd atrun postcat odp_stat.sh lvconvert e2fsck fsck.ext2 fsck.ext3 fsck.ext4 rtstat ibprintrt.pl ifconfig era_dump xfs_growfs sminfo lvmsadc ibclearcounters dmfilemapd restorecon thin_ls ldattach grpconv vendor_post_uninstall.sh ntpq nvsetenv era_check connectx_port_config postconf delpart try-from vpdupdate era_restore avcstat munged snmpd mountstats mklost+found lvmsar ls-veth snmptrapd route ibsrpdm ibstat phc2sys lvresize cracklib-packer new-kernel-pkg fsck.nfs irqbalance logrotate xfs_rtcp rpc.rquotad ibcacheedit genhomedircon genl exportfs xfs_bmap grpck alsactl cache_writeback newusers selabel_partial_match makedumpfile show_gids mlnx_affinity ofed_uninstall.sh vgexport lvmdump nslcd pvresize partprobe set_irq_affinity_bynode.sh show_irq_affinity.sh dump_fts errinjct hardlink matchpathcon fdformat vgextend fsfreeze ofpathname pwck dhclient postdrop sendmail.postfix vgcfgbackup sulogin hack-coff lpc.cups xfs_info ypbind nameif nstat mkfs.cramfs sim_server activate_firmware nfsstat opensm gssproxy ibaddr mkfs.xfs groupadd halt osmtest lvmpolld lsmcode pvs lvremove start-statd debugfs setpci selinuxexeccon ibportstate rtmon ibcheckerrors vgimportclone e2label tune2fs rtas_dump postfix lnstat dump_mfts.sh thin_restore check_lft_balance.pl ibidsverify.pl cma_roce_tos selabel_lookup ip6tables-save rmmod cache_metadata_size nsm run_srp_daemon runuser xfs_metadump getcap sefcontext_compile ip iptables glibc_post_upgrade.ppc64le fsadm iblinkinfo.pl ibqueryerrors.pl setfiles sys_ident dhclient-script tracepath6 findfs getsebool cbq e2image blkdiscard uuserver ifcfg shutdown smtp-source install-info set_nodedesc.sh xfs_repair rsyslogd rpcdebug lvm mkhomedir_helper pvscan logsave pwconv unsquashfs ntp-keygen e2undo blkmapd vgscan osd_login umount.nfs ibcheckerrs rpc.nfsd iblinkinfo ibtracert cfdisk common_irq_affinity.sh modinfo sasldblistusers2 rtpr selinuxconlist wrapper blkid ibclearerrors lvmconf xqmstats vgsplit postsuper thin_check filefrag adduser redhat_lsb_trigger.ppc64le dump_lfts.sh drmgr cache_check crond pvchange vendstat setenforce addgnupghome tcpdmatch reboot vipw rpc.gssd cracklib-format perfquery sln pivot_root create-cracklib-dict quotaon groupdel ptp4l mkfs xfs_estimate dmeventd gss-server usernetctl show_counters xfs_ncheck vgchange grpunconv quotastats iptunnel dkms resizepart sysctl_perf_tuning xfs_mkfile repquota ip6tables-restore lusermod wipefs sshd ifdown cache_restore arp pvremove clock tickadj ldconfig selinuxdefcon lvreduce vigr quot vgdisplay lchage arping ibacm ibcheckportstate smparquery insmod addnote lvmetad ibprintca.pl switch_root hwclock kpartx ifstat sysinfo-snapshot.py setsebool edquota killall5 pidof anacron service sfdisk vgimport vgrename sm-notify lvmdiskscan lvscan selinuxenabled nologin atd accessdb ibcheckstate userdel lsvio ibnodes weak-modules quotaoff setquota era_invalidate automount xfs_copy sosreport consoletype phc_ctl safe_finger ppc64_cpu mlnx_eswitch_set uesensor rpc.mountd ls-vscsi ibsysstat modprobe ibstatus lgroupadd vgs rtacct pdata_tools telinit setup_mr_cache.sh poweroff lsof slattach visudo ibcheckportwidth update-pciids nscd update_flash smtp-sink mkswap sushell lvmconfig mktree xfs_admin ctstat lvrename ibmirror pam_tally2 chkconfig pam_console_apply xfs_io ib2ib_setup nfsdcltrack mksquashfs umount.nfs4 arpd rtas_ibm_get_vpd setcap rtas_dbg chroot ibqueryerrors grubby timemaster ibchecknet installkernel vgmerge rpc.idmapd create-munge-key routef mount.nfs pvmove ip6tables postmulti ibnetdiscover key.dns_resolver request-key alsabat-test.sh genhostid ibswportwatch.pl postmap init ibprintswitch.pl ether-wake ifenslave selinux_restorecon fstrim xfs_fsr packer lgroupdel vgcreate mount.nfs4 ethtool fsck.cramfs postalias lvextend vgconvert saslpasswd2 netreport mkfs.minix cma_roce_mode ibcheckwidth thin_metadata_size faillock thin_rmap ibcheckport pvck postkick ibrouters pvcreate tcpd vgck rpcbind ping6 opal-prd thin_delta mii-tool showmount ibccquery devlink set_irq_affinity.sh ibping nfsiostat mlnx_tune hvcsadmin unix_chkpwd getenforce luseradd set_poweron_time semodule convertquota applygnupgdefaults fuser ibccconfig compat_gid_gen /opt/ibm/flightlog/bin: decoder /opt/ibutils/bin: ibmsquit ibis dump2slvl.pl ibdiagpath IBMgtSim dump2psl.pl ibdmchk mkSimNodeDir ibdiagui ibdiagnet RunSimTest ibdmtr ibtopodiff ibdmsh ibnlparse ibmssh /opt/ibm/spectrum_mpi/jsm_pmix/bin: jsrun jswait jskill query_env export_slurm_env jsm_simulator js_task_info admin jsproxy jslist export_smpi_env jsm stock /opt/puppetlabs/bin: hiera facter puppet facter-ng.bat /usr/lpp/mmfs/bin: mmtrace mmsysmon.py mmnfsfuncs mmcesnfsmonitor mmjob mmdelcallback tsdf tschfileset tslsdisk tslspolicy tslsfs tsdelsnapshot tslsfileset tsnsdaccess tscrsnapshot tslspool tssnapdir tsedquota tsusercmd tslssnapshot tsstatus mmcrnsd tsgetscsiinfo mmqosnice mmsetquota mmdelfileset tsprpreemptabort cleanupkeystonedb mmsdrfsdef.Linux mmcesuserauthcrservice mmdumpfilocks tschdisk tsaddpdisk tsctl tskafkaauth tsdbfs tscheckquota tsfsctl tsrpldisk tschpdisk tsrecgroupserver tscmd tsreclaimspace tscrrecgroup tschstoragepool tsrestripefs tsdefragfs tsfileid tsdsh tsdeldisk tsquotaon tschfs tsdefedquota tsunmount tsdelpdisk tsressnapshot tscrvdisk tsquotaoff tsexpelnode tslsvdisk tscrfs tschmgr tslsrecgroup tslsrecoverygroupevents tsdelvdisk tsnsddiscover tsdefquotaoff tscrfileset tsdelfs tsdbvdisk tsdelfileset tsadddisk tscachectl tsdefquotaon tschcarrier tsauth tslsqos tslspdisk tsnsdrediscover tsremount tsdelrecgroup tschpool tsrepquota tschqos tschrecgroup tsfsck tsdiag tssbrff mmlsfileset mmexectsmcmd mmgetkafkaspecinfo mmfs mmchconfig ces.snap.py mmperfmon tsgetacl clstrwatchcallbacks mmcessmblsconfig tslsattr mmcesmonitord .links mmnfsgrace mmhelp-apolicy mmpmon mmcesnfsdelexport mmchpolicy gui.snap.py tspcache perfmon.snap.py mmsdrquerydef mmlsqos mmxargs tschattr mmclidecode clstrwatchconsumermanager mmfsctl mmpsnap mmccrnv perf.snap.py mmcespnfsip mmnfsnodeback tsimgrestore mmcesuserauthckservice mmchnodeclass pymmcesnfslsexport.py mmdelacl mmumount mmcrnodeclass mmsysmonc tspcacheevict mmexecvfile sshwrap mmgetifconf mmfs-ppc64-rh4 sysmon.snap.py mmimgrestore mmcesobjaccesslinkfset mmchecksubsys mmcesop tspmon mmdefedquota mmdelsnapshot mmreclaimspace mmsysmoncontrol tsspectrumdiscover mmyfields mmchnode mmrestorefs mmcallhome mmexportfs mmcesnfsloadexport tslspool34 mmnfsmonitor mmsnmpagentd30 tsfindinode mmfsfuncs.Linux mmdumpperfdata mmcesobjcrbase mmdsh objmetric_count.py mmauditmount mmcessmblsexport mmdevdiscover mmlsnode mmautoload mmcesnfscrexport mmchnsd mmfileid mmcesnfsfuncs mmcesrecovernode mmsklmconfig mmlsfs mmcollectdebugdata tseditacl tsbuhelper tslinkfileset tspreparedisk mmrpldisk mmdelnode mmceslog mmcrfsc mmcesblockfuncs mmgensymtable mmfsd mmnfsinstall mmdspmsg mmclone mmchfs mmlsdisk mmnfstakeover tsyselect mmnfsup mmcessmbcrexport tsaddrmap mmnetverify mmchpool msgqueue.snap.py mmcesobjlscfg tsrestorefileset mmbuildgpl mmsmbman tsfindname mmcesloadmonitor mmcesobjaccess mmaddcallback mmcesobjpolicyfuncs mmcessmbdelexport msgqueueDaemonManager core.snap.py tsgskkm mmauth mmedquota mmshutdown tsdbmemleakparse mmadquery mmsdrcli mmccr mmcesobjchstoragepolicy mmcesnfschcfg tswatchmonitor mmmigratefs mmputacl mmlscluster commonsnap.py mmcesservice mmadddisk tslsmgr tssbrindex mmafmlocal mmlsperfdata mmnfsuninstall mmcmi mmcesobjs3 tspcachescan mmlsnsd mmchcluster mmunmount mmnfsquorumloss mmcesnetdeladdress mmlsquota mmces pymmcesnfsfuncs.py tsputacl mmchqos tsprshowfence gpfsrunlevel mmimgbackup mmsdrrestore tsqosnice mmsdrserv mmmsgqueue mmcesmmcdelexport mmlinkfileset mmrestoreconfig mmdelnodeclass mmsmbfuncs lxtrace-4.14.0-115.21.2.el7a.ppc64le mmcesobjcfgman mmfixcfg mmcesnfslsexport tsdbmemleak mmaudit mmcesnfslscfg mmsmbsupportedoptions mmafmconfig mmlscallback mmlsmgr tsbackup mmcesminfuncs mmfsmount mmcesmmcchexport tsrestripefile kdump mmimportfs mmcesobjcrring mmnfs mmcommon mmcesnetmvaddress mmsnmpagentd mmcesobjfuncs gui.callhome.py tsbackup33 lxtrace mmsdrfsdef mmsmb mmobj tsprclear mmceshdfsfuncs mmcesnetworkmonitor tspcacheutil mmqos mmlspolicy mmrestripefs mmcessmbfuncs mmaddnode mmblock mmcrfs mmmount tsprreadres tssklmconfig mmnsddiscover mmprotocoltrace mmglobfuncs tsprreadkeys mmnfsdown gpfs.snap object.snap.py mmcesnetaddaddress mmcesobjchcfg mmrsh mmcesobjmr mmeditacl auditConsumerManager mmlsconfig mmsync mmgetacl mmcesuserauthrmservice mmhealth tsdelacl mmremote mmpercentencode mmcloudfuncs daemonize mmcesnfschexport tsclone callhome.snap.py clstrwatchreplaymanager tsnetverify mmstartup mmcachectl mmgskkm mmdefragfs mmsnapdir tsapolicy mmrcmd mmexpelnode mmsdrquery ece.callhome.py mmchdisk mmcesnetdown mmlslicense mmrestripefile mmcrfileset mmnfscleanup kdump-4.14.0-115.21.2.el7a.ppc64le mmlogmsg mmcessmbexportacl mmchlicense mmsetrcmd tsclwatchrules mmdynamicmap tssetquota tsprreserve wftopics mmvaryonvg mmsnmpagentd10 mmbackupconfig mmdefquotaon mmlsattr mmcesfuncs mmfsadm mmcesmmccrexport runmmfs mmafmcmd ccrrestore mmunlinkfileset basicsnap.py mmafmhomeconfig auth.snap.py fab3.snap.py mmuserauth object.callhome.py mmlogsort mmdf mmcesobjcrstoragepolicy mmdefquotaoff mmtracectl mmdump tsprquery mmfsenv mmfsfuncs mmrepquota mmcesdr mmcesnode tslsquota mmdsm mmdelnsd mmnfsinit mmcrsnapshot mmlockf mmcesauthfuncs network.callhome.py mmglobfuncs.Linux tsprinquiry nfs.snap.py mmcesnetlsaddress mmapplypolicy mmdumpkthreads tswatchgpfsconduit mmcessmbchconfig perfmon.callhome.py mmauditpreunmount mmrcp scpwrap mmremotefs tsunlinkfileset mmcrcluster mmnfspreunmount mmcessmbchexport tsauditconsumer mmchattr mmdeldisk mmfsck smb.snap.py mmcesobjdepstoragepolicy mmcheckquota mmprodname mmdelfs mmcallhremote mmgetstate mmcesuserauthlsservice mmcesnetup mmremotecluster tsstarthelper mmcloudgateway mmgetconfdata tschpolicy mmchmgr tsloadikm mmcesnetchaddress mmsmbvalidoptions mmkeyserv mmchfileset mmwatch tsprregister mmstartpolicy hadoop.snap.py mmquotaoff mmcesmonitor mmquotaon msgqueueservicesmonitormanager mmlspool mmlsmount mmccrmonitor mmbackup mmlsnodeclass mmrefresh mmnfsrecovernode mmpercentdecode wftopichk tspcachesnapdiff mmdiag mmlssnapshot mmcesobjlsstoragepolicy mmafmctl mmstatdcallout mmksh sshscpwrap ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:1017) child config.utilities.macosFirewall 0.000005 ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Linux Checking for program /sw/sources/lsf-tools/2.0/summit/bin/gdb...not found Checking for program /sw/summit/xalt/1.2.1/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/gdb...not found Checking for program /sw/summit/forge/20.0.1/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/gdb...not found Checking for program /sw/summit/gcc/6.4.0/bin/gdb...not found Checking for program /sw/summit/cuda/10.1.243/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/gdb...not found Checking for program /sw/sources/hpss/bin/gdb...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/gdb...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/gdb...not found Checking for program /opt/ibm/csm/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Executing: uname -s stdout: Linux child config.utilities.debuggers 0.016337 ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 15 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.003111 ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000510 ============================================================================================= TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/git...not found Checking for program /sw/summit/xalt/1.2.1/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/git...not found Checking for program /sw/summit/forge/20.0.1/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/git...not found Checking for program /sw/summit/gcc/6.4.0/bin/git...not found Checking for program /sw/summit/cuda/10.1.243/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/git...not found Checking for program /sw/sources/hpss/bin/git...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/git...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/git...not found Checking for program /opt/ibm/csm/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 1.8.3.1 ============================================================================================= TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/hg...not found Checking for program /sw/summit/xalt/1.2.1/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/hg...not found Checking for program /sw/summit/forge/20.0.1/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/hg...not found Checking for program /sw/summit/gcc/6.4.0/bin/hg...not found Checking for program /sw/summit/cuda/10.1.243/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/hg...not found Checking for program /sw/sources/hpss/bin/hg...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hg...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hg...not found Checking for program /opt/ibm/csm/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /usr/local/sbin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /opt/ibm/flightlog/bin/hg...not found Checking for program /opt/ibutils/bin/hg...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/hg...not found Checking for program /opt/puppetlabs/bin/hg...not found Checking for program /usr/lpp/mmfs/bin/hg...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/hg...not found child config.sourceControl 0.008321 ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.15.0-734-gc2c1a54 Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: c2c1a5487541cc02bcf7e58ccdf632092835a51b Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2021-06-07 02:44:02 +0000 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: main Defined "VERSION_GIT" to ""v3.15.0-734-gc2c1a54"" Defined "VERSION_DATE_GIT" to ""2021-06-07 02:44:02 +0000"" Defined "VERSION_BRANCH_GIT" to ""main"" child PETSc.options.petscclone 0.081762 ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set ============================================================================================= Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-summit-dbg-gnu-cuda, ignoring environment: arch-summit-opt-gnu-kokkos-notpl-cuda ============================================================================================= No previous hashfile found Setting hashfile: arch-summit-dbg-gnu-cuda/lib/petsc/conf/configure-hash Deleting configure hash file: arch-summit-dbg-gnu-cuda/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-summit-dbg-gnu-cuda/lib/petsc/conf/configure-hash child PETSc.options.arch 0.043543 ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:39) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:85) ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:78) ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:98) child PETSc.options.installDir 0.003106 ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000662 ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000932 ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1990) ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:2020) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1960) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1981) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:542) Initialize the compiler and linker flags Initialized CFLAGS to -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas Initialized CFLAGS to -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas Initialized LDFLAGS to Initialized CUDAFLAGS to -g -Xcompiler -lineinfo Initialized CUDAFLAGS to -g -Xcompiler -lineinfo Initialized LDFLAGS to Initialized HIPFLAGS to Initialized HIPFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:717) Locate a functional C compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/mpicc...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc...found Defined make macro "CC" to "mpicc" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status: ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o Testing executable /tmp/petsc-EVLAuB/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-EVLAuB/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-EVLAuB/config.setCompilers/conftest Executing: mpicc --version stdout: gcc (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:756) Locate a functional C preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/mpicc...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:792) Locate a functional CUDA compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/nvcc...not found Checking for program /sw/summit/forge/20.0.1/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/nvcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/nvcc...found Defined make macro "CUDAC" to "nvcc" ===== Checking compiler Executing: nvcc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -g -Xcompiler -lineinfo -Wno-deprecated-gpu-targets /tmp/petsc-EVLAuB/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc --version stdout: nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2019 NVIDIA Corporation Built on Sun_Jul_28_19:07:52_PDT_2019 Cuda compilation tools, release 10.1, V10.1.243 ============================================================================================= TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:832) Locate a functional CUDA preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/nvcc...not found Checking for program /sw/summit/forge/20.0.1/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/nvcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/nvcc...found Defined make macro "CUDAPP" to "nvcc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include __global__ void testFunction() {return;}; Executing: nvcc -E -I/tmp/petsc-EVLAuB/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-EVLAuB/config.setCompilers/conftest.cu Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:866) Locate a functional HIP compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/hipcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/hipcc...not found Checking for program /sw/summit/forge/20.0.1/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/hipcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/hipcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/hipcc...not found Checking for program /sw/sources/hpss/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hipcc...not found Checking for program /opt/ibm/csm/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /usr/local/sbin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /opt/ibm/flightlog/bin/hipcc...not found Checking for program /opt/ibutils/bin/hipcc...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/hipcc...not found Checking for program /opt/puppetlabs/bin/hipcc...not found Checking for program /usr/lpp/mmfs/bin/hipcc...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/hipcc...not found Checking for program /sw/sources/lsf-tools/2.0/summit/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/opt/rocm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/forge/20.0.1/bin/opt/rocm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/opt/rocm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/opt/rocm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/sources/hpss/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/csm/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/flightlog/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibutils/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/puppetlabs/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/lpp/mmfs/bin/opt/rocm/bin/hipcc...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found ============================================================================================= TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:909) Locate a functional HIP preprocessor ============================================================================================= TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:940) Locate a functional SYCL compiler ============================================================================================= TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:966) Placeholder for now ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1053) Locate a functional Cxx compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpiCC...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpiCC...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/mpiCC...not found Checking for program /sw/summit/forge/20.0.1/bin/mpiCC...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpiCC...found Defined make macro "CXX" to "mpiCC" ===== Checking compiler Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiCC -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o ===== Checking linker Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiCC -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status: ======== Checking running linked program ===== Checking linker Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiCC -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o Testing executable /tmp/petsc-EVLAuB/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-EVLAuB/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-EVLAuB/config.setCompilers/conftest Executing: mpiCC --version stdout: g++ (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ============================================================================================= TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1094) Locate a functional Cxx preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpiCC...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpiCC...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/mpiCC...not found Checking for program /sw/summit/forge/20.0.1/bin/mpiCC...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpiCC...found Defined make macro "CXXPP" to "mpiCC -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpiCC -E -I/tmp/petsc-EVLAuB/config.setCompilers /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1193) Locate a functional Fortran compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpifort...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpifort...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/mpifort...not found Checking for program /sw/summit/forge/20.0.1/bin/mpifort...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpifort...found Defined make macro "FC" to "mpifort" ===== Checking compiler Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers /tmp/petsc-EVLAuB/config.setCompilers/conftest.F90 Successful compile: Source: program main end ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers /tmp/petsc-EVLAuB/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpifort -o /tmp/petsc-EVLAuB/config.setCompilers/conftest /tmp/petsc-EVLAuB/config.setCompilers/conftest.o ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers /tmp/petsc-EVLAuB/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpifort -o /tmp/petsc-EVLAuB/config.setCompilers/conftest /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status: ======== Checking running linked program ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers /tmp/petsc-EVLAuB/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpifort -o /tmp/petsc-EVLAuB/config.setCompilers/conftest /tmp/petsc-EVLAuB/config.setCompilers/conftest.o Testing executable /tmp/petsc-EVLAuB/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-EVLAuB/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-EVLAuB/config.setCompilers/conftest Executing: mpifort --version stdout: GNU Fortran (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ============================================================================================= TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1230) Locate a functional Fortran preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpifort...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpifort...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/mpifort...not found Checking for program /sw/summit/forge/20.0.1/bin/mpifort...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpifort...found Defined make macro "FPP" to "mpifort -E" Deleting "FPP" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpifort...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpifort...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/mpifort...not found Checking for program /sw/summit/forge/20.0.1/bin/mpifort...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpifort...found Defined make macro "FPP" to "mpifort --use cpp32" Deleting "FPP" ============================================================================================= TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1252) Make sure fortran comment "!" works ===== Checking compiler Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers /tmp/petsc-EVLAuB/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ============================================================================================= TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1399) ============================================================================================= TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1498) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ar...not found Checking for program /sw/summit/xalt/1.2.1/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/ar...not found Checking for program /sw/summit/forge/20.0.1/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ar...not found Checking for program /sw/summit/gcc/6.4.0/bin/ar...not found Checking for program /sw/summit/cuda/10.1.243/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ar...not found Checking for program /sw/sources/hpss/bin/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ar...not found Checking for program /opt/ibm/csm/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ranlib...not found Checking for program /sw/summit/xalt/1.2.1/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/ranlib...not found Checking for program /sw/summit/forge/20.0.1/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ranlib...not found Checking for program /sw/summit/gcc/6.4.0/bin/ranlib...not found Checking for program /sw/summit/cuda/10.1.243/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ranlib...not found Checking for program /sw/sources/hpss/bin/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ranlib...not found Checking for program /opt/ibm/csm/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-EVLAuB/config.setCompilers/libconf1.a /tmp/petsc-EVLAuB/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-EVLAuB/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ar...not found Checking for program /sw/summit/xalt/1.2.1/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/ar...not found Checking for program /sw/summit/forge/20.0.1/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ar...not found Checking for program /sw/summit/gcc/6.4.0/bin/ar...not found Checking for program /sw/summit/cuda/10.1.243/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ar...not found Checking for program /sw/sources/hpss/bin/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ar...not found Checking for program /opt/ibm/csm/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ranlib...not found Checking for program /sw/summit/xalt/1.2.1/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/ranlib...not found Checking for program /sw/summit/forge/20.0.1/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ranlib...not found Checking for program /sw/summit/gcc/6.4.0/bin/ranlib...not found Checking for program /sw/summit/cuda/10.1.243/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ranlib...not found Checking for program /sw/sources/hpss/bin/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ranlib...not found Checking for program /opt/ibm/csm/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-EVLAuB/config.setCompilers/libconf1.a /tmp/petsc-EVLAuB/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-EVLAuB/config.setCompilers/libconf1.a ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -L/tmp/petsc-EVLAuB/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ============================================================================================= TESTING: checkArchiverRecipeArgfile from config.setCompilers(config/BuildSystem/config/setCompilers.py:1562) Checks if AR handles @ notation Executing: /usr/bin/ar cr checkRecipeArgfile.a @checkRecipeArgfile.args Defined make macro "AR_ARGFILE" to "yes" ============================================================================================= TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1642) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker mpicc using flags ['-shared'] Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/mpicc...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc...found Defined make macro "LD_SHARED" to "mpicc" Executing: mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Executing: mpicc -show stdout: gcc -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -pthread -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm Trying no specific compiler flag for PIC code since MPI compiler or current flags seem to provide such a flag with -fPIC Trying C compiler flag Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -shared -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o Valid C linker flag -shared ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/libconftest.so -shared -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -L/tmp/petsc-EVLAuB/config.setCompilers -lconftest Using shared linker mpicc with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux ============================================================================================= TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1342) Determine the PIC option for each compiler Executing: mpiCC --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Executing: mpiCC -show stdout: g++ -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -pthread -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm Trying Cxx compiler flag -fPIC for PIC code Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -fPIC /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC Added Cxx compiler flag -fPIC ===== Checking linker Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -fPIC /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/libconftest.so -shared -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC for PIC code Executing: mpifort --help | head -n 20 stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Executing: mpifort -show stdout: gfortran -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -pthread -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm Trying FC compiler flag -fPIC for PIC code Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC /tmp/petsc-EVLAuB/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -fPIC Added FC compiler flag -fPIC ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC /tmp/petsc-EVLAuB/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/libconftest.so -shared -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o Accepted FC compiler flag -fPIC for PIC code Trying CUDA compiler flag -Xcompiler -fPIC for PIC code Executing: nvcc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -g -Xcompiler -lineinfo -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-EVLAuB/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -Xcompiler -lineinfo -Xcompiler -fPIC Added CUDA compiler flag -Xcompiler -fPIC ===== Checking linker Executing: nvcc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -g -Xcompiler -lineinfo -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-EVLAuB/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/libconftest.so -shared -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o Accepted CUDA compiler flag -Xcompiler -fPIC for PIC code ============================================================================================= TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1755) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: uname -s stdout: Linux Executing: mpicc -V Trying C linker flag -Wl,-rpath, Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc Executing: uname -s stdout: Linux Executing: mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -fPIC /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiCC -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc Executing: uname -s stdout: Linux Executing: mpicc -V Trying FC linker flag -Wl,-rpath, Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC /tmp/petsc-EVLAuB/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpifort -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc -fPIC /tmp/petsc-EVLAuB/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc Executing: uname -s stdout: Linux Executing: mpicc -V Trying CUDA linker flag -Wl,-rpath, Executing: nvcc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -g -Xcompiler -lineinfo -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-EVLAuB/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -g -Xcompiler -lineinfo -Xcompiler -fPIC /tmp/petsc-EVLAuB/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lineinfo collect2: error: ld returned 1 exit status Rejecting linker flag -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc due to nonzero status from link Linker output before filtering: /usr/bin/ld: cannot find -lineinfo collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lineinfo collect2: error: ld returned 1 exit status: Rejected CUDA linker flag -Wl,-rpath, Trying CUDA linker flag -R Executing: nvcc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -g -Xcompiler -lineinfo -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-EVLAuB/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -g -Xcompiler -lineinfo -Xcompiler -fPIC /tmp/petsc-EVLAuB/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lineinfo collect2: error: ld returned 1 exit status Rejecting linker flag -R/gpfs/alpine/csc314/scratch/adams/petsc due to nonzero status from link Linker output before filtering: /usr/bin/ld: cannot find -lineinfo collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lineinfo collect2: error: ld returned 1 exit status: Rejected CUDA linker flag -R Trying CUDA linker flag -rpath Executing: nvcc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -g -Xcompiler -lineinfo -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-EVLAuB/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -g -Xcompiler -lineinfo -Xcompiler -fPIC /tmp/petsc-EVLAuB/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lineinfo collect2: error: ld returned 1 exit status Rejecting linker flag -rpath /gpfs/alpine/csc314/scratch/adams/petsc due to nonzero status from link Linker output before filtering: /usr/bin/ld: cannot find -lineinfo collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lineinfo collect2: error: ld returned 1 exit status: Rejected CUDA linker flag -rpath Trying CUDA linker flag -Wl,-R, Executing: nvcc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -g -Xcompiler -lineinfo -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-EVLAuB/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -g -Xcompiler -lineinfo -Xcompiler -fPIC /tmp/petsc-EVLAuB/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lineinfo collect2: error: ld returned 1 exit status Rejecting linker flag -Wl,-R,/gpfs/alpine/csc314/scratch/adams/petsc due to nonzero status from link Linker output before filtering: /usr/bin/ld: cannot find -lineinfo collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lineinfo collect2: error: ld returned 1 exit status: Rejected CUDA linker flag -Wl,-R, ============================================================================================= TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1794) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/libconftest.so -shared -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ============================================================================================= TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1840) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker mpicc using flags ['-shared'] Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/mpicc...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "mpicc" Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -shared -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -ldl Valid C linker flag -shared ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/libconftest.so -shared -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -ldl ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-EVLAuB/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -ldl Using dynamic linker mpicc with flags ['-shared'] and library extension so ============================================================================================= TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1889) Output module data as defines and substitutions Substituting "CC" with "mpicc" Substituting "CFLAGS" with "-fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CUDAC" with "nvcc" Substituting "CUDAFLAGS" with "-g -Xcompiler -lineinfo -Xcompiler -fPIC" Substituting "CUDAPP" with "nvcc -E" Substituting "CUDAPPFLAGS" with "-Wno-deprecated-gpu-targets" Substituting "CXX" with "mpiCC" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "-fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "mpiCC -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "mpifort" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 16.493750 ============================================================================================= TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.000734 ============================================================================================= TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:82) Get the default compiler flags Defined make macro "C_VERSION" to "gcc (GCC) 6.4.0" Ignoring default options which were overridden using --CFLAGS -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas Trying C compiler flag -O0 Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Added C compiler flag -O0 Defined make macro "Cxx_VERSION" to "g++ (GCC) 6.4.0" Ignoring default options which were overridden using --CXXFLAGS -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas Trying Cxx compiler flag -O0 Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -fPIC /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 Added Cxx compiler flag -O0 Defined make macro "FC_VERSION" to "GNU Fortran (GCC) 6.4.0" Defined make macro "MPIFC_SHOW" to "gfortran -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -pthread -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm" Trying FC compiler flag -Wall Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -Wall /tmp/petsc-EVLAuB/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -fPIC -Wall Added FC compiler flag -Wall Trying FC compiler flag -ffree-line-length-0 Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -Wall -ffree-line-length-0 /tmp/petsc-EVLAuB/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -fPIC -Wall -ffree-line-length-0 Added FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument /tmp/petsc-EVLAuB/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument Added FC compiler flag -Wno-unused-dummy-argument Defined make macro "MPIFC_SHOW" to "gfortran -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -pthread -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm" Trying FC compiler flag -g Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-EVLAuB/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g Added FC compiler flag -g Trying FC compiler flag -O0 Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 Added FC compiler flag -O0 Defined make macro "CUDA_VERSION" to "nvcc: NVIDIA (R) Cuda compiler driver" Ignoring default options which were overridden using --CUDAFLAGS -g -Xcompiler -lineinfo Optimization options found in CUDAFLAGS. Skipping setting defaults ============================================================================================= TESTING: checkIntelHardwareSupport from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:173) Use Linux/MacOS commands to determine what operations the hardware supports Executing: lscpu stdout: Architecture: ppc64le Byte Order: Little Endian CPU(s): 128 On-line CPU(s) list: 0-127 Thread(s) per core: 4 Core(s) per socket: 16 Socket(s): 2 NUMA node(s): 6 Model: 2.1 (pvr 004e 1201) Model name: POWER9, altivec supported CPU max MHz: 3800.0000 CPU min MHz: 2300.0000 L1d cache: 32K L1i cache: 32K L2 cache: 512K L3 cache: 10240K NUMA node0 CPU(s): 0-63 NUMA node8 CPU(s): 64-127 NUMA node252 CPU(s): NUMA node253 CPU(s): NUMA node254 CPU(s): NUMA node255 CPU(s): ============================================================================================= TESTING: checkCompilerMacros from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:164) Save the list of CPP macros defined by the C and C++ compiler, does not work for all compilers Executing: mpicc -c -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilerFlags -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.compilerFlags/conftest.c -E -dM stdout: #define __DBL_MIN_EXP__ (-1021) #define __builtin_vsx_xvmsubmsp __builtin_vsx_xvmsubsp #define __UINT_LEAST16_MAX__ 0xffff #define __ATOMIC_ACQUIRE 2 #define __FLT_MIN__ 1.17549435082228750796873653722225e-38F #define __GCC_IEC_559_COMPLEX 2 #define __UINT_LEAST8_TYPE__ unsigned char #define __VEC__ 10206 #define __INTMAX_C(c) c ## L #define __CHAR_BIT__ 8 #define _ARCH_PPCGR 1 #define __UINT8_MAX__ 0xff #define __builtin_vsx_xvnmaddadp __builtin_vsx_xvnmadddp #define __WINT_MAX__ 0xffffffffU #define __PPC64__ 1 #define __RECIPF__ 1 #define __UPPER_REGS_SF__ 1 #define __builtin_vsx_xxlnor __builtin_vec_nor #define __ORDER_LITTLE_ENDIAN__ 1234 #define __SIZE_MAX__ 0xffffffffffffffffUL #define __WCHAR_MAX__ 0x7fffffff #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __DBL_DENORM_MIN__ ((double)4.94065645841246544176568792868221e-324L) #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __ALTIVEC__ 1 #define __GCC_IEC_559 2 #define _LITTLE_ENDIAN 1 #define __FLT_EVAL_METHOD__ 0 #define __unix__ 1 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define pixel pixel #define _ARCH_PPCSQ 1 #define bool bool #define __UINT_FAST64_MAX__ 0xffffffffffffffffUL #define __SIG_ATOMIC_TYPE__ int #define __DBL_MIN_10_EXP__ (-307) #define __FINITE_MATH_ONLY__ 0 #define __GNUC_PATCHLEVEL__ 0 #define __builtin_vsx_xvnmaddasp __builtin_vsx_xvnmaddsp #define __UINT_FAST8_MAX__ 0xff #define __has_include(STR) __has_include__(STR) #define __DEC64_MAX_EXP__ 385 #define __INT8_C(c) c #define __builtin_vsx_xvnmsubmdp __builtin_vsx_xvnmsubdp #define __UINT_LEAST64_MAX__ 0xffffffffffffffffUL #define __SHRT_MAX__ 0x7fff #define __LDBL_MAX__ 1.79769313486231580793728971405301e+308L #define __UINT_LEAST8_MAX__ 0xff #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define _ARCH_PPC 1 #define __UINTMAX_TYPE__ long unsigned int #define __linux 1 #define __DEC32_EPSILON__ 1E-6DF #define __HTM__ 1 #define __CHAR_UNSIGNED__ 1 #define __UINT32_MAX__ 0xffffffffU #define __RECIP_PRECISION__ 1 #define __LDBL_MAX_EXP__ 1024 #define __WINT_MIN__ 0U #define __builtin_vsx_xvmaddmdp __builtin_vsx_xvmadddp #define __linux__ 1 #define __builtin_vsx_vperm __builtin_vec_perm #define __SCHAR_MAX__ 0x7f #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define vector vector #define __builtin_vsx_xvnmsubmsp __builtin_vsx_xvnmsubsp #define __INT64_C(c) c ## L #define __DBL_DIG__ 15 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __SIZEOF_INT__ 4 #define __SIZEOF_POINTER__ 8 #define __USER_LABEL_PREFIX__ #define __STDC_HOSTED__ 1 #define __LDBL_HAS_INFINITY__ 1 #define _ARCH_PWR4 1 #define _ARCH_PWR5 1 #define _ARCH_PWR6 1 #define _ARCH_PWR7 1 #define _ARCH_PWR8 1 #define _ARCH_PWR9 1 #define __builtin_vsx_xvmaddmsp __builtin_vsx_xvmaddsp #define __CMODEL_MEDIUM__ 1 #define __FLT_EPSILON__ 1.19209289550781250000000000000000e-7F #define __LDBL_MIN__ 2.00416836000897277799610805135016e-292L #define __STDC_UTF_16__ 1 #define __DEC32_MAX__ 9.999999E96DF #define __INT32_MAX__ 0x7fffffff #define __SIZEOF_LONG__ 8 #define __STDC_IEC_559__ 1 #define __STDC_ISO_10646__ 201103L #define __UINT16_C(c) c #define __DECIMAL_DIG__ 33 #define __gnu_linux__ 1 #define __has_include_next(STR) __has_include_next__(STR) #define __LDBL_HAS_QUIET_NAN__ 1 #define _CALL_LINUX 1 #define __GNUC__ 6 #define __FLT_HAS_DENORM__ 1 #define __SIZEOF_LONG_DOUBLE__ 16 #define __powerpc64__ 1 #define __BIGGEST_ALIGNMENT__ 16 #define __QUAD_MEMORY_ATOMIC__ 1 #define __DBL_MAX__ ((double)1.79769313486231570814527423731704e+308L) #define __INT_FAST32_MAX__ 0x7fffffffffffffffL #define __DBL_HAS_INFINITY__ 1 #define __builtin_vsx_xvnmaddmdp __builtin_vsx_xvnmadddp #define __DEC32_MIN_EXP__ (-94) #define __builtin_vsx_xxlandc __builtin_vec_andc #define __INT_FAST16_TYPE__ long int #define __LDBL_HAS_DENORM__ 1 #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __INT_LEAST32_MAX__ 0x7fffffff #define __DEC32_MIN__ 1E-95DF #define __DBL_MAX_EXP__ 1024 #define __DEC128_EPSILON__ 1E-33DL #define __PTRDIFF_MAX__ 0x7fffffffffffffffL #define __STDC_NO_THREADS__ 1 #define __STRUCT_PARM_ALIGN__ 16 #define __TM_FENCE__ 1 #define __LONG_LONG_MAX__ 0x7fffffffffffffffLL #define __SIZEOF_SIZE_T__ 8 #define __builtin_vsx_xvnmaddmsp __builtin_vsx_xvnmaddsp #define __PPC__ 1 #define __SIZEOF_WINT_T__ 4 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __GXX_ABI_VERSION 1010 #define __RECIP__ 1 #define __FLT_MIN_EXP__ (-125) #define __INT_FAST64_TYPE__ long int #define __FP_FAST_FMAF 1 #define __DBL_MIN__ ((double)2.22507385850720138309023271733240e-308L) #define __LONGDOUBLE128 1 #define __LP64__ 1 #define __DEC128_MIN__ 1E-6143DL #define __REGISTER_PREFIX__ #define __UINT16_MAX__ 0xffff #define __DBL_HAS_DENORM__ 1 #define __builtin_vsx_xxland __builtin_vec_and #define __UINT8_TYPE__ unsigned char #define __NO_INLINE__ 1 #define __FLT_MANT_DIG__ 24 #define __VERSION__ "6.4.0" #define __UINT64_C(c) c ## UL #define _STDC_PREDEF_H 1 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __pixel __attribute__((altivec(pixel__))) unsigned short #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __STDC_IEC_559_COMPLEX__ 1 #define __INT32_C(c) c #define __DEC64_EPSILON__ 1E-15DD #define __ORDER_PDP_ENDIAN__ 3412 #define __DEC128_MIN_EXP__ (-6142) #define __INT_FAST32_TYPE__ long int #define __powerpc__ 1 #define __UINT_LEAST16_TYPE__ short unsigned int #define _ARCH_PWR5X 1 #define unix 1 #define __INT16_MAX__ 0x7fff #define __SIZE_TYPE__ long unsigned int #define __UINT64_MAX__ 0xffffffffffffffffUL #define __INT8_TYPE__ signed char #define __ELF__ 1 #define __HAVE_BSWAP__ 1 #define __FLT_RADIX__ 2 #define __INT_LEAST16_TYPE__ short int #define __LDBL_EPSILON__ 4.94065645841246544176568792868221e-324L #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 0x7fffffff #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __SIZEOF_PTRDIFF_T__ 8 #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __INT_FAST16_MAX__ 0x7fffffffffffffffL #define __vector __attribute__((altivec(vector__))) #define __UINT_FAST32_MAX__ 0xffffffffffffffffUL #define __UINT_LEAST64_TYPE__ long unsigned int #define __builtin_vsx_xvmsubadp __builtin_vsx_xvmsubdp #define __builtin_vsx_xxsel __builtin_vec_sel #define __FLT_HAS_QUIET_NAN__ 1 #define __bool __attribute__((altivec(bool__))) unsigned #define __FLT_MAX_10_EXP__ 38 #define __LONG_MAX__ 0x7fffffffffffffffL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __FLT_HAS_INFINITY__ 1 #define __unix 1 #define __CRYPTO__ 1 #define __UINT_FAST16_TYPE__ long unsigned int #define __DEC64_MAX__ 9.999999999999999E384DD #define __CHAR16_TYPE__ short unsigned int #define __PRAGMA_REDEFINE_EXTNAME 1 #define __INT_LEAST16_MAX__ 0x7fff #define __LONG_DOUBLE_IBM128__ 1 #define __DEC64_MANT_DIG__ 16 #define __INT64_MAX__ 0x7fffffffffffffffL #define __UINT_LEAST32_MAX__ 0xffffffffU #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __INT_LEAST64_TYPE__ long int #define __UPPER_REGS_DF__ 1 #define __INT16_TYPE__ short int #define __INT_LEAST8_TYPE__ signed char #define __STDC_VERSION__ 201112L #define __DEC32_MAX_EXP__ 97 #define __INT_FAST8_MAX__ 0x7f #define __INTPTR_MAX__ 0x7fffffffffffffffL #define linux 1 #define __LITTLE_ENDIAN__ 1 #define __builtin_vsx_xvmsubasp __builtin_vsx_xvmsubsp #define __LDBL_MANT_DIG__ 106 #define __DBL_HAS_QUIET_NAN__ 1 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INTPTR_TYPE__ long int #define __UINT16_TYPE__ short unsigned int #define __WCHAR_TYPE__ int #define __SIZEOF_FLOAT__ 4 #define __pic__ 2 #define __UINTPTR_MAX__ 0xffffffffffffffffUL #define __DEC64_MIN_EXP__ (-382) #define __INT_FAST64_MAX__ 0x7fffffffffffffffL #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __RSQRTE__ 1 #define __FLT_DIG__ 6 #define __UINT_FAST64_TYPE__ long unsigned int #define __INT_MAX__ 0x7fffffff #define __LONG_DOUBLE_128__ 1 #define __VSX__ 1 #define __INT64_TYPE__ long int #define __FLT_MAX_EXP__ 128 #define __builtin_vsx_xxlor __builtin_vec_or #define __ORDER_BIG_ENDIAN__ 4321 #define __DBL_MANT_DIG__ 53 #define __INT_LEAST64_MAX__ 0x7fffffffffffffffL #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __builtin_vsx_xxlxor __builtin_vec_xor #define __DEC64_MIN__ 1E-383DD #define __WINT_TYPE__ unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __SIZEOF_SHORT__ 2 #define __LDBL_MIN_EXP__ (-968) #define __INT_LEAST8_MAX__ 0x7f #define __RSQRTEF__ 1 #define __SIZEOF_INT128__ 16 #define __LDBL_MAX_10_EXP__ 308 #define __ATOMIC_RELAXED 0 #define __DBL_EPSILON__ ((double)2.22044604925031308084726333618164e-16L) #define _LP64 1 #define __UINT8_C(c) c #define __INT_LEAST32_TYPE__ int #define __SIZEOF_WCHAR_T__ 4 #define __UINT64_TYPE__ long unsigned int #define __builtin_vsx_xvnmsubadp __builtin_vsx_xvnmsubdp #define __INT_FAST8_TYPE__ signed char #define __GNUC_STDC_INLINE__ 1 #define __DBL_DECIMAL_DIG__ 17 #define __STDC_UTF_32__ 1 #define __DEC_EVAL_METHOD__ 2 #define __VEC_ELEMENT_REG_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __builtin_vsx_xvmaddadp __builtin_vsx_xvmadddp #define __APPLE_ALTIVEC__ 1 #define __UINT32_C(c) c ## U #define __INTMAX_MAX__ 0x7fffffffffffffffL #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLT_DENORM_MIN__ 1.40129846432481707092372958328992e-45F #define __builtin_vsx_xvnmsubasp __builtin_vsx_xvnmsubsp #define __INT8_MAX__ 0x7f #define __PIC__ 2 #define __UINT_FAST32_TYPE__ long unsigned int #define __CHAR32_TYPE__ unsigned int #define __FLT_MAX__ 3.40282346638528859811704183484517e+38F #define __FP_FAST_FMA 1 #define __INT32_TYPE__ int #define __SIZEOF_DOUBLE__ 8 #define __FLT_MIN_10_EXP__ (-37) #define __INTMAX_TYPE__ long int #define __DEC128_MAX_EXP__ 6145 #define __POWER8_VECTOR__ 1 #define __ATOMIC_CONSUME 1 #define __GNUC_MINOR__ 4 #define __UINTMAX_MAX__ 0xffffffffffffffffUL #define __DEC32_MANT_DIG__ 7 #define __builtin_vsx_xvmaddasp __builtin_vsx_xvmaddsp #define __DBL_MAX_10_EXP__ 308 #define __LDBL_DENORM_MIN__ 4.94065645841246544176568792868221e-324L #define __INT16_C(c) c #define __STDC__ 1 #define __builtin_vsx_xvmsubmdp __builtin_vsx_xvmsubdp #define __PTRDIFF_TYPE__ long int #define __ATOMIC_SEQ_CST 5 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_16 1 #define __UINT32_TYPE__ unsigned int #define __UINTPTR_TYPE__ long unsigned int #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define _ARCH_PPC64 1 #define __DEC128_MANT_DIG__ 34 #define __LDBL_MIN_10_EXP__ (-291) #define __SIZEOF_LONG_LONG__ 8 #define _Bool _Bool #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __LDBL_DIG__ 31 #define __FLT_DECIMAL_DIG__ 9 #define __UINT_FAST16_MAX__ 0xffffffffffffffffUL #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __UINT_FAST8_TYPE__ unsigned char #define _CALL_ELF 2 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_RELEASE 3 Executing: mpiCC -c -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilerFlags -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -fPIC /tmp/petsc-EVLAuB/config.compilerFlags/conftest.cc -E -dM stdout: #define __DBL_MIN_EXP__ (-1021) #define __cpp_attributes 200809 #define __builtin_vsx_xvmsubmsp __builtin_vsx_xvmsubsp #define __UINT_LEAST16_MAX__ 0xffff #define __ATOMIC_ACQUIRE 2 #define __FLT_MIN__ 1.17549435082228750796873653722225e-38F #define __GCC_IEC_559_COMPLEX 2 #define __UINT_LEAST8_TYPE__ unsigned char #define __INTMAX_C(c) c ## L #define __builtin_vsx_xxlandc __builtin_vec_andc #define __CHAR_BIT__ 8 #define _ARCH_PPCGR 1 #define __UINT8_MAX__ 0xff #define __builtin_vsx_xvmsubmdp __builtin_vsx_xvmsubdp #define __builtin_vsx_xvnmaddadp __builtin_vsx_xvnmadddp #define __WINT_MAX__ 0xffffffffU #define __PPC64__ 1 #define __RECIPF__ 1 #define __UPPER_REGS_SF__ 1 #define __cpp_static_assert 200410 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __SIZE_MAX__ 0xffffffffffffffffUL #define __WCHAR_MAX__ 0x7fffffff #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __DBL_DENORM_MIN__ double(4.94065645841246544176568792868221e-324L) #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __ALTIVEC__ 1 #define __GCC_IEC_559 2 #define _LITTLE_ENDIAN 1 #define __FLT_EVAL_METHOD__ 0 #define __unix__ 1 #define __cpp_binary_literals 201304 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __cpp_variadic_templates 200704 #define _ARCH_PPCSQ 1 #define __UINT_FAST64_MAX__ 0xffffffffffffffffUL #define __SIG_ATOMIC_TYPE__ int #define __DBL_MIN_10_EXP__ (-307) #define __FINITE_MATH_ONLY__ 0 #define __GNUC_PATCHLEVEL__ 0 #define __builtin_vsx_xvnmaddasp __builtin_vsx_xvnmaddsp #define __UINT_FAST8_MAX__ 0xff #define __has_include(STR) __has_include__(STR) #define __DEC64_MAX_EXP__ 385 #define __INT8_C(c) c #define __builtin_vsx_xvnmsubmdp __builtin_vsx_xvnmsubdp #define __UINT_LEAST64_MAX__ 0xffffffffffffffffUL #define __SHRT_MAX__ 0x7fff #define __LDBL_MAX__ 1.79769313486231580793728971405301e+308L #define __UINT_LEAST8_MAX__ 0xff #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define _ARCH_PPC 1 #define __UINTMAX_TYPE__ long unsigned int #define __DEC32_EPSILON__ 1E-6DF #define __HTM__ 1 #define __CHAR_UNSIGNED__ 1 #define __UINT32_MAX__ 0xffffffffU #define __GXX_EXPERIMENTAL_CXX0X__ 1 #define __RECIP_PRECISION__ 1 #define __LDBL_MAX_EXP__ 1024 #define __WINT_MIN__ 0U #define __builtin_vsx_xvmaddmdp __builtin_vsx_xvmadddp #define __linux__ 1 #define __builtin_vsx_vperm __builtin_vec_perm #define __SCHAR_MAX__ 0x7f #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define __builtin_vsx_xvnmsubmsp __builtin_vsx_xvnmsubsp #define __INT64_C(c) c ## L #define __DBL_DIG__ 15 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __SIZEOF_INT__ 4 #define __SIZEOF_POINTER__ 8 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __USER_LABEL_PREFIX__ #define __STDC_HOSTED__ 1 #define __LDBL_HAS_INFINITY__ 1 #define _ARCH_PWR4 1 #define _ARCH_PWR5 1 #define _ARCH_PWR6 1 #define _ARCH_PWR7 1 #define _ARCH_PWR8 1 #define _ARCH_PWR9 1 #define __builtin_vsx_xvmaddmsp __builtin_vsx_xvmaddsp #define __CMODEL_MEDIUM__ 1 #define __FLT_EPSILON__ 1.19209289550781250000000000000000e-7F #define __GXX_WEAK__ 1 #define __LDBL_MIN__ 2.00416836000897277799610805135016e-292L #define __DEC32_MAX__ 9.999999E96DF #define __INT32_MAX__ 0x7fffffff #define __SIZEOF_LONG__ 8 #define __STDC_IEC_559__ 1 #define __STDC_ISO_10646__ 201103L #define __UINT16_C(c) c #define __DECIMAL_DIG__ 33 #define __gnu_linux__ 1 #define __has_include_next(STR) __has_include_next__(STR) #define __LDBL_HAS_QUIET_NAN__ 1 #define _CALL_LINUX 1 #define __GNUC__ 6 #define __GXX_RTTI 1 #define __cpp_delegating_constructors 200604 #define __FLT_HAS_DENORM__ 1 #define __SIZEOF_LONG_DOUBLE__ 16 #define __powerpc64__ 1 #define __BIGGEST_ALIGNMENT__ 16 #define __STDC_UTF_16__ 1 #define __QUAD_MEMORY_ATOMIC__ 1 #define __DBL_MAX__ double(1.79769313486231570814527423731704e+308L) #define __cpp_raw_strings 200710 #define __INT_FAST32_MAX__ 0x7fffffffffffffffL #define __DBL_HAS_INFINITY__ 1 #define __INT64_MAX__ 0x7fffffffffffffffL #define __builtin_vsx_xvnmaddmdp __builtin_vsx_xvnmadddp #define __DEC32_MIN_EXP__ (-94) #define __INT_FAST16_TYPE__ long int #define __STRICT_ANSI__ 1 #define __LDBL_HAS_DENORM__ 1 #define __cplusplus 201103L #define __cpp_ref_qualifiers 200710 #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __INT_LEAST32_MAX__ 0x7fffffff #define __DEC32_MIN__ 1E-95DF #define __cpp_rvalue_references 200610 #define __DBL_MAX_EXP__ 1024 #define __DEC128_EPSILON__ 1E-33DL #define __PTRDIFF_MAX__ 0x7fffffffffffffffL #define __STDC_NO_THREADS__ 1 #define __STRUCT_PARM_ALIGN__ 16 #define __TM_FENCE__ 1 #define __GNUG__ 6 #define __LONG_LONG_MAX__ 0x7fffffffffffffffLL #define __SIZEOF_SIZE_T__ 8 #define __builtin_vsx_xvnmaddmsp __builtin_vsx_xvnmaddsp #define __PPC__ 1 #define __cpp_rvalue_reference 200610 #define __cpp_nsdmi 200809 #define __SIZEOF_WINT_T__ 4 #define __cpp_initializer_lists 200806 #define __cpp_hex_float 201603 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __GXX_ABI_VERSION 1010 #define __RECIP__ 1 #define __FLT_MIN_EXP__ (-125) #define __cpp_lambdas 200907 #define __INT_FAST64_TYPE__ long int #define __FP_FAST_FMAF 1 #define __DBL_MIN__ double(2.22507385850720138309023271733240e-308L) #define __LONGDOUBLE128 1 #define __LP64__ 1 #define __VEC__ 10206 #define __DEC128_MIN__ 1E-6143DL #define __REGISTER_PREFIX__ #define __UINT16_MAX__ 0xffff #define __DBL_HAS_DENORM__ 1 #define __builtin_vsx_xxland __builtin_vec_and #define __UINT8_TYPE__ unsigned char #define __NO_INLINE__ 1 #define __FLT_MANT_DIG__ 24 #define __VERSION__ "6.4.0" #define __UINT64_C(c) c ## UL #define __cpp_unicode_characters 200704 #define _STDC_PREDEF_H 1 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __pixel __attribute__((altivec(pixel__))) unsigned short #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __STDC_IEC_559_COMPLEX__ 1 #define __INT32_C(c) c #define __DEC64_EPSILON__ 1E-15DD #define __ORDER_PDP_ENDIAN__ 3412 #define __DEC128_MIN_EXP__ (-6142) #define __INT_FAST32_TYPE__ long int #define __powerpc__ 1 #define __UINT_LEAST16_TYPE__ short unsigned int #define _ARCH_PWR5X 1 #define __INT16_MAX__ 0x7fff #define __cpp_rtti 199711 #define __SIZE_TYPE__ long unsigned int #define __UINT64_MAX__ 0xffffffffffffffffUL #define __INT8_TYPE__ signed char #define __ELF__ 1 #define __HAVE_BSWAP__ 1 #define __FLT_RADIX__ 2 #define __INT_LEAST16_TYPE__ short int #define __LDBL_EPSILON__ 4.94065645841246544176568792868221e-324L #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 0x7fffffff #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __SIZEOF_PTRDIFF_T__ 8 #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __INT_FAST16_MAX__ 0x7fffffffffffffffL #define __vector __attribute__((altivec(vector__))) #define __UINT_FAST32_MAX__ 0xffffffffffffffffUL #define __UINT_LEAST64_TYPE__ long unsigned int #define __builtin_vsx_xvmsubadp __builtin_vsx_xvmsubdp #define __builtin_vsx_xxsel __builtin_vec_sel #define __FLT_HAS_QUIET_NAN__ 1 #define __bool __attribute__((altivec(bool__))) unsigned #define __FLT_MAX_10_EXP__ 38 #define __LONG_MAX__ 0x7fffffffffffffffL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __FLT_HAS_INFINITY__ 1 #define __cpp_unicode_literals 200710 #define __CRYPTO__ 1 #define __UINT_FAST16_TYPE__ long unsigned int #define __DEC64_MAX__ 9.999999999999999E384DD #define __CHAR16_TYPE__ short unsigned int #define __PRAGMA_REDEFINE_EXTNAME 1 #define __INT_LEAST16_MAX__ 0x7fff #define __LONG_DOUBLE_IBM128__ 1 #define __DEC64_MANT_DIG__ 16 #define __UINT_LEAST32_MAX__ 0xffffffffU #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __INT_LEAST64_TYPE__ long int #define __UPPER_REGS_DF__ 1 #define __INT16_TYPE__ short int #define __INT_LEAST8_TYPE__ signed char #define __DEC32_MAX_EXP__ 97 #define __INT_FAST8_MAX__ 0x7f #define __INTPTR_MAX__ 0x7fffffffffffffffL #define __cpp_range_based_for 200907 #define __LITTLE_ENDIAN__ 1 #define __EXCEPTIONS 1 #define __builtin_vsx_xvmsubasp __builtin_vsx_xvmsubsp #define __LDBL_MANT_DIG__ 106 #define __DBL_HAS_QUIET_NAN__ 1 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INTPTR_TYPE__ long int #define __UINT16_TYPE__ short unsigned int #define __WCHAR_TYPE__ int #define __SIZEOF_FLOAT__ 4 #define __pic__ 2 #define __UINTPTR_MAX__ 0xffffffffffffffffUL #define __DEC64_MIN_EXP__ (-382) #define __cpp_decltype 200707 #define __INT_FAST64_MAX__ 0x7fffffffffffffffL #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __RSQRTE__ 1 #define __FLT_DIG__ 6 #define __UINT_FAST64_TYPE__ long unsigned int #define __INT_MAX__ 0x7fffffff #define __LONG_DOUBLE_128__ 1 #define __VSX__ 1 #define __INT64_TYPE__ long int #define __FLT_MAX_EXP__ 128 #define __builtin_vsx_xxlor __builtin_vec_or #define __ORDER_BIG_ENDIAN__ 4321 #define __DBL_MANT_DIG__ 53 #define __cpp_inheriting_constructors 200802 #define __INT_LEAST64_MAX__ 0x7fffffffffffffffL #define __builtin_vsx_xxlxor __builtin_vec_xor #define __DEC64_MIN__ 1E-383DD #define __WINT_TYPE__ unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __SIZEOF_SHORT__ 2 #define __LDBL_MIN_EXP__ (-968) #define __INT_LEAST8_MAX__ 0x7f #define __RSQRTEF__ 1 #define __SIZEOF_INT128__ 16 #define __LDBL_MAX_10_EXP__ 308 #define __ATOMIC_RELAXED 0 #define __DBL_EPSILON__ double(2.22044604925031308084726333618164e-16L) #define _LP64 1 #define __UINT8_C(c) c #define __INT_LEAST32_TYPE__ int #define __SIZEOF_WCHAR_T__ 4 #define __UINT64_TYPE__ long unsigned int #define __builtin_vsx_xvnmsubadp __builtin_vsx_xvnmsubdp #define __INT_FAST8_TYPE__ signed char #define __GNUC_STDC_INLINE__ 1 #define __DBL_DECIMAL_DIG__ 17 #define __STDC_UTF_32__ 1 #define __DEC_EVAL_METHOD__ 2 #define __VEC_ELEMENT_REG_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __builtin_vsx_xvmaddadp __builtin_vsx_xvmadddp #define __cpp_runtime_arrays 198712 #define __UINT32_C(c) c ## U #define __INTMAX_MAX__ 0x7fffffffffffffffL #define __cpp_alias_templates 200704 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLT_DENORM_MIN__ 1.40129846432481707092372958328992e-45F #define __builtin_vsx_xvnmsubasp __builtin_vsx_xvnmsubsp #define __INT8_MAX__ 0x7f #define __PIC__ 2 #define __UINT_FAST32_TYPE__ long unsigned int #define __CHAR32_TYPE__ unsigned int #define __FLT_MAX__ 3.40282346638528859811704183484517e+38F #define __FP_FAST_FMA 1 #define __cpp_constexpr 200704 #define __builtin_vsx_xxlnor __builtin_vec_nor #define __INT32_TYPE__ int #define __SIZEOF_DOUBLE__ 8 #define __cpp_exceptions 199711 #define __INTMAX_TYPE__ long int #define __DEC128_MAX_EXP__ 6145 #define __POWER8_VECTOR__ 1 #define __ATOMIC_CONSUME 1 #define __GNUC_MINOR__ 4 #define __UINTMAX_MAX__ 0xffffffffffffffffUL #define __DEC32_MANT_DIG__ 7 #define __builtin_vsx_xvmaddasp __builtin_vsx_xvmaddsp #define __DBL_MAX_10_EXP__ 308 #define __LDBL_DENORM_MIN__ 4.94065645841246544176568792868221e-324L #define __INT16_C(c) c #define __STDC__ 1 #define __PTRDIFF_TYPE__ long int #define __ATOMIC_SEQ_CST 5 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_16 1 #define __UINT32_TYPE__ unsigned int #define __UINTPTR_TYPE__ long unsigned int #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define _ARCH_PPC64 1 #define __DEC128_MANT_DIG__ 34 #define __LDBL_MIN_10_EXP__ (-291) #define __SIZEOF_LONG_LONG__ 8 #define __cpp_user_defined_literals 200809 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __LDBL_DIG__ 31 #define __FLT_DECIMAL_DIG__ 9 #define __UINT_FAST16_MAX__ 0xffffffffffffffffUL #define __FLT_MIN_10_EXP__ (-37) #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __UINT_FAST8_TYPE__ unsigned char #define _GNU_SOURCE 1 #define _CALL_ELF 2 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_RELEASE 3 child config.compilerFlags 0.777676 Executing: mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler ============================================================================================= TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1459) Check for -std=c99 or equivalent flag Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Output from compiling with -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Accepted C99 compile flag: ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:158) Check for the C/CXX restrict keyword Executing: mpicc -V ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:413) Activate format string checking if using the GNU compilers ============================================================================================= TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:128) Check for C inline keyword ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ============================================================================================= TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:424) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.compilers/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ============================================================================================= TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:222) Determines the libraries needed to link with C compiled code ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: mpifort -o /tmp/petsc-EVLAuB/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.o /tmp/petsc-EVLAuB/config.compilers/confc.o -ldl C libraries are not needed when using Fortran linker ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -fPIC /tmp/petsc-EVLAuB/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpiCC -o /tmp/petsc-EVLAuB/config.compilers/conftest -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.o /tmp/petsc-EVLAuB/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1410) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -MMD -MP /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -MMD -MP cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -fPIC -MMD -MP /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -MMD -MP Trying CUDA compiler flag -MMD -MP Rejected CUDA compiler flag -MMD -MP Trying CUDA compiler flag -MMD Rejected CUDA compiler flag -MMD Trying CUDA compiler flag -xMMD Rejected CUDA compiler flag -xMMD Trying CUDA compiler flag -qmakedep=gcc Rejected CUDA compiler flag -qmakedep=gcc Trying CUDA compiler flag -MD Rejected CUDA compiler flag -MD Executing: nvcc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -g -Xcompiler -lineinfo -Xcompiler -fPIC -MMD -MP -Wno-deprecated-gpu-targets /tmp/petsc-EVLAuB/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -Xcompiler -lineinfo -Xcompiler -fPIC -MMD -MP nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Rejecting compiler flag -MMD -MP due to nonzero status from link Rejecting compiler flag -MMD -MP due to nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Executing: nvcc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -g -Xcompiler -lineinfo -Xcompiler -fPIC -MMD -Wno-deprecated-gpu-targets /tmp/petsc-EVLAuB/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -Xcompiler -lineinfo -Xcompiler -fPIC -MMD nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Rejecting compiler flag -MMD due to nonzero status from link Rejecting compiler flag -MMD due to nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Executing: nvcc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -g -Xcompiler -lineinfo -Xcompiler -fPIC -xMMD -Wno-deprecated-gpu-targets /tmp/petsc-EVLAuB/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'xMMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -Xcompiler -lineinfo -Xcompiler -fPIC -xMMD nvcc fatal : Unknown option 'xMMD' PETSc Error: No output file produced Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to nvcc fatal : Unknown option 'xMMD' PETSc Error: No output file produced Executing: nvcc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -g -Xcompiler -lineinfo -Xcompiler -fPIC -qmakedep=gcc -Wno-deprecated-gpu-targets /tmp/petsc-EVLAuB/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'qmakedep' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -Xcompiler -lineinfo -Xcompiler -fPIC -qmakedep=gcc nvcc fatal : Unknown option 'qmakedep' PETSc Error: No output file produced Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejecting compiler flag -qmakedep=gcc due to nvcc fatal : Unknown option 'qmakedep' PETSc Error: No output file produced Executing: nvcc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -g -Xcompiler -lineinfo -Xcompiler -fPIC -MD -Wno-deprecated-gpu-targets /tmp/petsc-EVLAuB/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -Xcompiler -lineinfo -Xcompiler -fPIC -MD nvcc fatal : Unknown option 'MD' PETSc Error: No output file produced Rejecting compiler flag -MD due to nonzero status from link Rejecting compiler flag -MD due to nvcc fatal : Unknown option 'MD' PETSc Error: No output file produced Executing: mpiCC --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:158) Check for the C/CXX restrict keyword Executing: mpicc -V ===== Checking compiler Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -fPIC /tmp/petsc-EVLAuB/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:471) Determine the CXX dialect supported by the compiler(language) [and correspoding compiler option - if any]. isGNU indicates if the compiler is g++. -with--dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 for Cxx with flag: Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -fPIC /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc: In function 'int main()': /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc:19:28: error: use of 'auto' in lambda parameter declaration only available with -std=c++14 or -std=gnu++14 auto lambda = [](auto x, auto y) {return x + y;}; ^~~~ /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc:19:36: error: use of 'auto' in lambda parameter declaration only available with -std=c++14 or -std=gnu++14 auto lambda = [](auto x, auto y) {return x + y;}; ^~~~ Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4) + (int)std::real(I); ; return 0; } Output from compiling with -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc: In function 'int main()': /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc:19:28: error: use of 'auto' in lambda parameter declaration only available with -std=c++14 or -std=gnu++14 auto lambda = [](auto x, auto y) {return x + y;}; ^~~~ /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc:19:36: error: use of 'auto' in lambda parameter declaration only available with -std=c++14 or -std=gnu++14 auto lambda = [](auto x, auto y) {return x + y;}; ^~~~ PETSc Error: No output file produced Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc: In function 'int main()': /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc:19:28: error: use of 'auto' in lambda parameter declaration only available with -std=c++14 or -std=gnu++14 auto lambda = [](auto x, auto y) {return x + y;}; ^~~~ /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc:19:36: error: use of 'auto' in lambda parameter declaration only available with -std=c++14 or -std=gnu++14 auto lambda = [](auto x, auto y) {return x + y;}; ^~~~ PETSc Error: No output file produced checkCxxDialect: checking CXX14 for Cxx with flag: -std=gnu++14 Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4) + (int)std::real(I); ; return 0; } Output from compiling with -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 ============================================================================================= TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:443) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Output from compiling with -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 ============================================================================================= TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:143) Check for C++ inline keyword ===== Checking compiler Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ============================================================================================= TESTING: checkCxxComplexFix from config.compilers(config/BuildSystem/config/compilers.py:566) Determine if the CXX compiler supports utilities provided by petsccxxcomplexfix.h ===== Checking compiler Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define Type int #define PetscReal double #define PetscComplex std::complex /* The two lines, from petsccxxcomplexfix.h, can cause the combination "C++14 + GCC-4.x libstdc++ library" to fail, complaining imag() is not marked const. If the compiler can compile these two lines, it should be able to compile other lines. */ static inline PetscComplex operator-(const Type& lhs, const PetscComplex& rhs) { return PetscReal(lhs) - const_cast(rhs); } static inline PetscComplex operator/(const Type& lhs, const PetscComplex& rhs) { return PetscReal(lhs) / const_cast(rhs); } int main() { Type x = 2; PetscComplex y(1.0,1.0),z,w; z = x - y; w = x / y; std::cout << z << w; ; return 0; } the CXX compiler supports petsccxxcomplexfix.h Defined "HAVE_CXX_COMPLEX_FIX" to "1" ============================================================================================= TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:595) Determines the libraries needed to link with C++ from C and Fortran ===== Checking compiler Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicc -o /tmp/petsc-EVLAuB/config.compilers/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.o /tmp/petsc-EVLAuB/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.compilers/confc.o: In function `asub()': /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-EVLAuB/config.compilers/confc.o: In function `__static_initialization_and_destruction_0(int, int)': /autofs/nccs-svm1_sw/summit/gcc/6.4.0/include/c++/6.4.0/iostream:74: undefined reference to `std::ios_base::Init::Init()' /tmp/petsc-EVLAuB/config.compilers/confc.o:(.toc+0x0): undefined reference to `typeinfo for int' /tmp/petsc-EVLAuB/config.compilers/confc.o:(.toc+0x8): undefined reference to `std::cout' /tmp/petsc-EVLAuB/config.compilers/confc.o:(.toc+0x10): undefined reference to `std::ios_base::Init::~Init()' /tmp/petsc-EVLAuB/config.compilers/confc.o: In function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /autofs/nccs-svm1_sw/summit/gcc/6.4.0/include/c++/6.4.0/ext/new_allocator.h:110: undefined reference to `operator delete(void*)' /tmp/petsc-EVLAuB/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /tmp/petsc-EVLAuB/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.compilers/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.compilers/confc.o: In function `asub()': /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-EVLAuB/config.compilers/confc.o: In function `__static_initialization_and_destruction_0(int, int)': /autofs/nccs-svm1_sw/summit/gcc/6.4.0/include/c++/6.4.0/iostream:74: undefined reference to `std::ios_base::Init::Init()' /tmp/petsc-EVLAuB/config.compilers/confc.o:(.toc+0x0): undefined reference to `typeinfo for int' /tmp/petsc-EVLAuB/config.compilers/confc.o:(.toc+0x8): undefined reference to `std::cout' /tmp/petsc-EVLAuB/config.compilers/confc.o:(.toc+0x10): undefined reference to `std::ios_base::Init::~Init()' /tmp/petsc-EVLAuB/config.compilers/confc.o: In function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /autofs/nccs-svm1_sw/summit/gcc/6.4.0/include/c++/6.4.0/ext/new_allocator.h:110: undefined reference to `operator delete(void*)' /tmp/petsc-EVLAuB/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /tmp/petsc-EVLAuB/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.compilers/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.compilers/confc.o: In function `asub()': /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-EVLAuB/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-EVLAuB/config.compilers/confc.o: In function `__static_initialization_and_destruction_0(int, int)': /autofs/nccs-svm1_sw/summit/gcc/6.4.0/include/c++/6.4.0/iostream:74: undefined reference to `std::ios_base::Init::Init()' /tmp/petsc-EVLAuB/config.compilers/confc.o:(.toc+0x0): undefined reference to `typeinfo for int' /tmp/petsc-EVLAuB/config.compilers/confc.o:(.toc+0x8): undefined reference to `std::cout' /tmp/petsc-EVLAuB/config.compilers/confc.o:(.toc+0x10): undefined reference to `std::ios_base::Init::~Init()' /tmp/petsc-EVLAuB/config.compilers/confc.o: In function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /autofs/nccs-svm1_sw/summit/gcc/6.4.0/include/c++/6.4.0/ext/new_allocator.h:110: undefined reference to `operator delete(void*)' /tmp/petsc-EVLAuB/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /tmp/petsc-EVLAuB/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.compilers/conftest' collect2: error: ld returned 1 exit status: Executing: uname -s stdout: Linux ===== Checking compiler Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicc -o /tmp/petsc-EVLAuB/config.compilers/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.o /tmp/petsc-EVLAuB/config.compilers/confc.o -lstdc++ -ldl compilers: C++ requires -lstdc++ to link with C compiler ===== Checking compiler Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: mpifort -o /tmp/petsc-EVLAuB/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.o /tmp/petsc-EVLAuB/config.compilers/confc.o -lstdc++ -ldl C++ libraries are not needed when using FC linker Executing: mpiCC -V ============================================================================================= TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:902) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: mpifort -o /tmp/petsc-EVLAuB/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.o /tmp/petsc-EVLAuB/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Executing: mpifort --version stdout: GNU Fortran (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Defined "FORTRAN_CHARLEN_T" to "int" ============================================================================================= TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:940) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Executing: mpifort -o /tmp/petsc-EVLAuB/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.o /tmp/petsc-EVLAuB/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.compilers/conftest.o: In function `MAIN__': /tmp/petsc-EVLAuB/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.compilers/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.compilers/conftest.o: In function `MAIN__': /tmp/petsc-EVLAuB/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.compilers/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.compilers/conftest.o: In function `MAIN__': /tmp/petsc-EVLAuB/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.compilers/conftest' collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:950) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.F90 Successful compile: Source: program main #include call MPI_Allreduce() end Executing: mpifort -o /tmp/petsc-EVLAuB/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.o -lstdc++ -ldl ===== Checking compiler Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' call MPI_Allreduce() return end ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.compilers/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.o /tmp/petsc-EVLAuB/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.compilers/confc.o: In function `asub_': /tmp/petsc-EVLAuB/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write' /tmp/petsc-EVLAuB/config.compilers/conftest.F90:2: undefined reference to `_gfortran_transfer_character_write' /tmp/petsc-EVLAuB/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write_done' /tmp/petsc-EVLAuB/config.compilers/conftest.F90:3: undefined reference to `mpi_allreduce_' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.compilers/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.compilers/confc.o: In function `asub_': /tmp/petsc-EVLAuB/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write' /tmp/petsc-EVLAuB/config.compilers/conftest.F90:2: undefined reference to `_gfortran_transfer_character_write' /tmp/petsc-EVLAuB/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write_done' /tmp/petsc-EVLAuB/config.compilers/conftest.F90:3: undefined reference to `mpi_allreduce_' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.compilers/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.compilers/confc.o: In function `asub_': /tmp/petsc-EVLAuB/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write' /tmp/petsc-EVLAuB/config.compilers/conftest.F90:2: undefined reference to `_gfortran_transfer_character_write' /tmp/petsc-EVLAuB/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write_done' /tmp/petsc-EVLAuB/config.compilers/conftest.F90:3: undefined reference to `mpi_allreduce_' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.compilers/conftest' collect2: error: ld returned 1 exit status: Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.F90 Successful compile: Source: program main end Executing: mpifort -o /tmp/petsc-EVLAuB/config.compilers/conftest -v -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: Driving: /sw/summit/gcc/6.4.0/bin/gfortran -o /tmp/petsc-EVLAuB/config.compilers/conftest -v -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.o -lstdc++ -ldl -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -pthread -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=/sw/summit/gcc/6.4.0/bin/gfortran COLLECT_LTO_WRAPPER=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none Target: powerpc64le-none-linux-gnu Configured with: /sw/summit/gcc/6.4.0/src/gcc-6.4.0/configure --prefix=/sw/summit/gcc/6.4.0 --build=powerpc64le-none-linux-gnu --host=powerpc64le-none-linux-gnu --target=powerpc64le-none-linux-gnu --enable-offload-targets=nvptx-none --with-cuda-driver=/sw/summit/cuda/9.0.184 --disable-multilib CFLAGS=-m64 Thread model: posix gcc version 6.4.0 (GCC) Reading specs from /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../../lib64/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-EVLAuB/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include' '-pthread' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-shared-libgcc' COMPILER_PATH=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/ LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/../lib64/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-EVLAuB/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include' '-pthread' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-shared-libgcc' /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/collect2 -plugin /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/liblto_plugin.so -plugin-opt=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/lto-wrapper -plugin-opt=-fresolution=/tmp/ccf17Zmx.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lpthread -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --eh-frame-hdr -V -m elf64lppc -dynamic-linker /lib64/ld64.so.2 -o /tmp/petsc-EVLAuB/config.compilers/conftest /lib/../lib64/crt1.o /lib/../lib64/crti.o /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/crtbegin.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/../lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../.. /tmp/petsc-EVLAuB/config.compilers/conftest.o -lstdc++ -ldl -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -lgcc_s -lgcc -lm -lgcc_s -lgcc -lpthread -lc -lgcc_s -lgcc /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/crtend.o /lib/../lib64/crtn.o COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-EVLAuB/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include' '-pthread' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-shared-libgcc' Linker output before filtering: Driving: /sw/summit/gcc/6.4.0/bin/gfortran -o /tmp/petsc-EVLAuB/config.compilers/conftest -v -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.o -lstdc++ -ldl -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -pthread -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=/sw/summit/gcc/6.4.0/bin/gfortran COLLECT_LTO_WRAPPER=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none Target: powerpc64le-none-linux-gnu Configured with: /sw/summit/gcc/6.4.0/src/gcc-6.4.0/configure --prefix=/sw/summit/gcc/6.4.0 --build=powerpc64le-none-linux-gnu --host=powerpc64le-none-linux-gnu --target=powerpc64le-none-linux-gnu --enable-offload-targets=nvptx-none --with-cuda-driver=/sw/summit/cuda/9.0.184 --disable-multilib CFLAGS=-m64 Thread model: posix gcc version 6.4.0 (GCC) Reading specs from /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../../lib64/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-EVLAuB/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include' '-pthread' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-shared-libgcc' COMPILER_PATH=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/ LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/../lib64/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-EVLAuB/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include' '-pthread' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-shared-libgcc' /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/collect2 -plugin /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/liblto_plugin.so -plugin-opt=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/lto-wrapper -plugin-opt=-fresolution=/tmp/ccf17Zmx.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lpthread -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --eh-frame-hdr -V -m elf64lppc -dynamic-linker /lib64/ld64.so.2 -o /tmp/petsc-EVLAuB/config.compilers/conftest /lib/../lib64/crt1.o /lib/../lib64/crti.o /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/crtbegin.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/../lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../.. /tmp/petsc-EVLAuB/config.compilers/conftest.o -lstdc++ -ldl -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -lgcc_s -lgcc -lm -lgcc_s -lgcc -lpthread -lc -lgcc_s -lgcc /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/crtend.o /lib/../lib64/crtn.o COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-EVLAuB/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include' '-pthread' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-shared-libgcc' : Linker output after filtering: Driving: /sw/summit/gcc/6.4.0/bin/gfortran -o /tmp/petsc-EVLAuB/config.compilers/conftest -v -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.o -lstdc++ -ldl -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -pthread -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=/sw/summit/gcc/6.4.0/bin/gfortran COLLECT_LTO_WRAPPER=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none Target: powerpc64le-none-linux-gnu Configured with: /sw/summit/gcc/6.4.0/src/gcc-6.4.0/configure --prefix=/sw/summit/gcc/6.4.0 --build=powerpc64le-none-linux-gnu --host=powerpc64le-none-linux-gnu --target=powerpc64le-none-linux-gnu --enable-offload-targets=nvptx-none --with-cuda-driver=/sw/summit/cuda/9.0.184 --disable-multilib CFLAGS=-m64 Thread model: posix gcc version 6.4.0 (GCC) Reading specs from /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../../lib64/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-EVLAuB/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include' '-pthread' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-shared-libgcc' COMPILER_PATH=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/ LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/../lib64/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-EVLAuB/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include' '-pthread' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-shared-libgcc' /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/collect2 -plugin /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/liblto_plugin.so -plugin-opt=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/lto-wrapper -plugin-opt=-fresolution=/tmp/ccf17Zmx.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lpthread -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --eh-frame-hdr -V -m elf64lppc -dynamic-linker /lib64/ld64.so.2 -o /tmp/petsc-EVLAuB/config.compilers/conftest /lib/../lib64/crt1.o /lib/../lib64/crti.o /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/crtbegin.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/../lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../.. /tmp/petsc-EVLAuB/config.compilers/conftest.o -lstdc++ -ldl -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -lgcc_s -lgcc -lm -lgcc_s -lgcc -lpthread -lc -lgcc_s -lgcc /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/crtend.o /lib/../lib64/crtn.o COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-EVLAuB/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include' '-pthread' '-I' '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib' '-shared-libgcc': compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg /sw/summit/gcc/6.4.0/bin/gfortran compilers: Unknown arg /sw/summit/gcc/6.4.0/bin/gfortran compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-EVLAuB/config.compilers/conftest compilers: Unknown arg /tmp/petsc-EVLAuB/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg -O0 compilers: Unknown arg -O0 compilers: Checking arg /tmp/petsc-EVLAuB/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-EVLAuB/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include compilers: Found include directory: /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include compilers: Checking arg -pthread compilers: Unknown arg -pthread compilers: Checking arg -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib compilers: Found include directory: /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib compilers: Checking arg -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib compilers: Found library directory: -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib compilers: Checking arg -lmpiprofilesupport compilers: Found library: -lmpiprofilesupport compilers: Checking arg -lmpi_ibm_usempi compilers: Found library: -lmpi_ibm_usempi compilers: Checking arg -lmpi_ibm_mpifh compilers: Found library: -lmpi_ibm_mpifh compilers: Checking arg -lmpi_ibm compilers: Found library: -lmpi_ibm compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -l compilers: Found canonical library: -lm compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=/sw/summit/gcc/6.4.0/bin/gfortran compilers: Unknown arg COLLECT_GCC=/sw/summit/gcc/6.4.0/bin/gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/lto-wrapper compilers: Checking arg OFFLOAD_TARGET_NAMES=nvptx-none compilers: Unknown arg OFFLOAD_TARGET_NAMES=nvptx-none compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg powerpc64le-none-linux-gnu compilers: Unknown arg powerpc64le-none-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg /sw/summit/gcc/6.4.0/src/gcc-6.4.0/configure compilers: Unknown arg /sw/summit/gcc/6.4.0/src/gcc-6.4.0/configure compilers: Checking arg --prefix=/sw/summit/gcc/6.4.0 compilers: Unknown arg --prefix=/sw/summit/gcc/6.4.0 compilers: Checking arg --build=powerpc64le-none-linux-gnu compilers: Unknown arg --build=powerpc64le-none-linux-gnu compilers: Checking arg --host=powerpc64le-none-linux-gnu compilers: Unknown arg --host=powerpc64le-none-linux-gnu compilers: Checking arg --target=powerpc64le-none-linux-gnu compilers: Unknown arg --target=powerpc64le-none-linux-gnu compilers: Checking arg --enable-offload-targets=nvptx-none compilers: Unknown arg --enable-offload-targets=nvptx-none compilers: Checking arg --with-cuda-driver=/sw/summit/cuda/9.0.184 compilers: Unknown arg --with-cuda-driver=/sw/summit/cuda/9.0.184 compilers: Checking arg --disable-multilib compilers: Unknown arg --disable-multilib compilers: Checking arg CFLAGS=-m64 compilers: Unknown arg CFLAGS=-m64 compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 6.4.0 compilers: Unknown arg 6.4.0 compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../../lib64/libgfortran.spec compilers: Unknown arg /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../../lib64/libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/ compilers: Skipping arg COMPILER_PATH=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/ compilers: Checking arg LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/../lib64/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../:/lib/:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/../lib64/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib/:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/:/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/collect2 compilers: Unknown arg /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/collect2 compilers: Checking arg -plugin compilers: Unknown arg -plugin compilers: Checking arg /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/liblto_plugin.so compilers: Unknown arg /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/liblto_plugin.so compilers: Checking arg -plugin-opt=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/lto-wrapper compilers: Unknown arg -plugin-opt=/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../libexec/gcc/powerpc64le-none-linux-gnu/6.4.0/lto-wrapper compilers: Checking arg -plugin-opt=-fresolution=/tmp/ccf17Zmx.res compilers: Unknown arg -plugin-opt=-fresolution=/tmp/ccf17Zmx.res compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lm compilers: Unknown arg -plugin-opt=-pass-through=-lm compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lpthread compilers: Unknown arg -plugin-opt=-pass-through=-lpthread compilers: Checking arg -plugin-opt=-pass-through=-lc compilers: Unknown arg -plugin-opt=-pass-through=-lc compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -V compilers: Unknown arg -V compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf64lppc compilers: Unknown arg elf64lppc compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld64.so.2 compilers: Unknown arg /lib64/ld64.so.2 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-EVLAuB/config.compilers/conftest compilers: Unknown arg /tmp/petsc-EVLAuB/config.compilers/conftest compilers: Checking arg /lib/../lib64/crt1.o compilers: Unknown arg /lib/../lib64/crt1.o compilers: Checking arg /lib/../lib64/crti.o compilers: Unknown arg /lib/../lib64/crti.o compilers: Checking arg /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/crtbegin.o compilers: Unknown arg /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/crtbegin.o compilers: Checking arg -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib compilers: Already in lflags so skipping: -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib compilers: Checking arg -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0 compilers: Found library directory: -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 compilers: Checking arg -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc compilers: Found library directory: -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc compilers: Checking arg -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/../lib64 compilers: Found library directory: -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 compilers: Checking arg -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../../../lib64 compilers: Found library directory: -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 compilers: Already in lflags so skipping: -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 compilers: Checking arg -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib compilers: Found library directory: -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib compilers: Checking arg -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib compilers: Already in lflags so skipping: -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib compilers: Checking arg -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib compilers: Found library directory: -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib compilers: Checking arg -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/../../.. compilers: Found library directory: -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib compilers: Checking arg /tmp/petsc-EVLAuB/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-EVLAuB/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lmpiprofilesupport compilers: Already in lflags: -lmpiprofilesupport compilers: Checking arg -lmpi_ibm_usempi compilers: Already in lflags: -lmpi_ibm_usempi compilers: Checking arg -lmpi_ibm_mpifh compilers: Already in lflags: -lmpi_ibm_mpifh compilers: Checking arg -lmpi_ibm compilers: Already in lflags: -lmpi_ibm compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lpthread compilers: Found library: -lpthread compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/crtend.o compilers: Unknown arg /autofs/nccs-svm1_sw/summit/gcc/6.4.0/bin/../lib/gcc/powerpc64le-none-linux-gnu/6.4.0/crtend.o compilers: Checking arg /lib/../lib64/crtn.o compilers: Unknown arg /lib/../lib64/crtn.o compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Libraries needed to link Fortran code with the C linker: ['-lstdc++', '-ldl', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-lmpiprofilesupport', '-lmpi_ibm_usempi', '-lmpi_ibm_mpifh', '-lmpi_ibm', '-lgfortran', '-lm', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-lgfortran', '-lm', '-lgcc_s', '-lpthread'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with C as the linker Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status: ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl Testing executable /tmp/petsc-EVLAuB/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-EVLAuB/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-EVLAuB/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C++ as linker Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status: compilers: Fortran libraries can be used from C++ ===== Checking compiler Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiCC -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl ===== Checking linker Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiCC -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status ======== Checking running linked program ===== Checking linker Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiCC -o /tmp/petsc-EVLAuB/config.setCompilers/conftest -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl Testing executable /tmp/petsc-EVLAuB/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-EVLAuB/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-EVLAuB/config.setCompilers/conftest ============================================================================================= TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1375) Check that Fortran can link C++ libraries ===== Checking compiler Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} ===== Checking compiler Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: mpifort -o /tmp/petsc-EVLAuB/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilers/conftest.o /tmp/petsc-EVLAuB/config.compilers/cxxobj.o /tmp/petsc-EVLAuB/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran can link C++ functions ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:471) Determine the CXX dialect supported by the compiler(language) [and correspoding compiler option - if any]. isGNU indicates if the compiler is g++. -with--dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 for CUDA with flag: Defined "HAVE_CUDA_DIALECT_CXX14" to "1" Defined "HAVE_CUDA_DIALECT_CXX11" to "1" Executing: nvcc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -g -Xcompiler -lineinfo -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-EVLAuB/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4) + (int)std::real(I); ; return 0; } Output from compiling with -g -Xcompiler -lineinfo -Xcompiler -fPIC ============================================================================================= TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1537) child config.compilers 12.302347 ============================================================================================= TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.closure/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.utilities.closure/conftest.c: In function 'main': /tmp/petsc-EVLAuB/config.utilities.closure/conftest.c:6:6: error: expected identifier or '(' before '^' token int (^closure)(int);; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 0.055052 ============================================================================================= TESTING: checkFortranTypeSizes from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:56) Check whether real*8 is supported and suggest flags which will allow support Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /tmp/petsc-EVLAuB/config.compilersFortran/conftest.F90:2:21: real*8 variable 1 Warning: Unused variable 'variable' declared at (1) [-Wunused-variable] Source: program main real*8 variable end ============================================================================================= TESTING: checkFortranPreprocessor from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:73) Determine if Fortran handles preprocessing properly Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Output from compiling with -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 compilers: Fortran uses preprocessor ============================================================================================= TESTING: checkFortranDefineCompilerOption from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:96) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -DTesting /tmp/petsc-EVLAuB/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Output from compiling with -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -DTesting Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro ============================================================================================= TESTING: checkFortran90 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:146) Determine whether the Fortran compiler handles F90 ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /tmp/petsc-EVLAuB/config.compilersFortran/conftest.F90:3:43: REAL(KIND=SELECTED_REAL_KIND(10)) d 1 Warning: Unused variable 'd' declared at (1) [-Wunused-variable] Source: program main REAL(KIND=SELECTED_REAL_KIND(10)) d INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Executing: mpifort -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -lstdc++ -ldl Fortran compiler supports F90 ============================================================================================= TESTING: checkFortran90FreeForm from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:162) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Executing: mpifort -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "USING_F90FREEFORM" to "1" Fortran compiler supports F90FreeForm ============================================================================================= TESTING: checkFortran2003 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:176) Determine whether the Fortran compiler handles F2003 ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.F90 Successful compile: Source: module Base_module type, public :: base_type integer :: A contains procedure, public :: Print => BasePrint end type base_type contains subroutine BasePrint(this) class(base_type) :: this end subroutine BasePrint end module Base_module program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Executing: mpifort -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 ============================================================================================= TESTING: checkFortran90Array from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:211) Check for F90 array interfaces Executing: uname -s stdout: Linux ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } ======== Checking running linked program ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.F90 Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Executing: mpifort -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o /tmp/petsc-EVLAuB/config.compilersFortran/fooobj.o -lstdc++ -ldl Testing executable /tmp/petsc-EVLAuB/config.compilersFortran/conftest to see if it can be run Executing: /tmp/petsc-EVLAuB/config.compilersFortran/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-EVLAuB/config.compilersFortran/conftest stdout: arrays [0x7fffdb27de90 0x7fffdb27de90 0x7fffdb27de90] arrays [0x7fffdb27df30 0x7fffdb27df78 0x7fffdb27df30] pointers do not match! [0x7fffdb27df2c 0x7fffdb27df30] [0x7fffdb27df30] ERROR while running executable: Could not execute "['/tmp/petsc-EVLAuB/config.compilersFortran/conftest']": arrays [0x7fffdb27de90 0x7fffdb27de90 0x7fffdb27de90] arrays [0x7fffdb27df30 0x7fffdb27df78 0x7fffdb27df30] pointers do not match! [0x7fffdb27df2c 0x7fffdb27df30] [0x7fffdb27df30] compilers: F90 uses a single argument for array pointers ============================================================================================= TESTING: checkFortran90AssumedType from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:298) Executing: mpifort -qversion ============================================================================================= TESTING: checkFortranModuleInclude from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:303) Figures out what flag is used to specify the include path for Fortran modules ===== Checking compiler Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.F90 Successful compile: Source: program main use configtest write(*,*) testint end Executing: mpifort -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest -I/tmp/petsc-EVLAuB/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o /tmp/petsc-EVLAuB/config.compilersFortran/configtest.o -lstdc++ -ldl compilers: Fortran module include flag -I found ============================================================================================= TESTING: checkFortranModuleOutput from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:369) Figures out what flag is used to specify the output path for Fortran modules ===== Checking compiler Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilersFortran -module /tmp/petsc-EVLAuB/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option '-module'; did you mean '-mmodulo'? Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed ===== Checking compiler Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilersFortran -module:/tmp/petsc-EVLAuB/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option '-module:/tmp/petsc-EVLAuB/config.compilersFortran/confdir' Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed ===== Checking compiler Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilersFortran -fmod=/tmp/petsc-EVLAuB/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option '-fmod=/tmp/petsc-EVLAuB/config.compilersFortran/confdir' Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed ===== Checking compiler Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilersFortran -J/tmp/petsc-EVLAuB/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found ============================================================================================= TESTING: checkFortranTypeStar from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:135) Determine whether the Fortran compiler handles type(*) ===== Checking compiler Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.F90 Successful compile: Source: program main interface subroutine a(b) type(*) :: b(:) end subroutine end interface end Defined "HAVE_FORTRAN_TYPE_STAR" to "1" Fortran compiler supports type(*) ============================================================================================= TESTING: checkFortranTypeInitialize from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:125) Determines if PETSc objects in Fortran are initialized by default (doesn't work with common blocks) Defined "FORTRAN_TYPE_INITIALIZE" to " = -2" Initializing Fortran objects ============================================================================================= TESTING: configureFortranFlush from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:116) ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.F90 Successful compile: Source: program main call flush(6) end Executing: mpifort -o /tmp/petsc-EVLAuB/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_FLUSH" to "1" ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:414) Check if -MMD works for dependency generation, and add it if it does Trying FC compiler flag -MMD -MP Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -MMD -MP /tmp/petsc-EVLAuB/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -MMD -MP child config.compilersFortran 2.996030 ============================================================================================= TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:107) ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.headers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.headers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.headers/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.headers/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-EVLAuB/config.headers/conftest to see if it can be run Executing: /tmp/petsc-EVLAuB/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-EVLAuB/config.headers/conftest ============================================================================================= TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:140) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c ============================================================================================= TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:175) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.headers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:197) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ============================================================================================= TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.headers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated.: ============================================================================================= TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.headers/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 3.656135 ============================================================================================= TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.headers -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.cacheDetails/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.cacheDetails/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.utilities.cacheDetails/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.cacheDetails/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-EVLAuB/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-EVLAuB/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-EVLAuB/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "32" child config.utilities.cacheDetails 0.459255 ============================================================================================= TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ============================================================================================= TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.types/conftest.c: In function 'main': /tmp/petsc-EVLAuB/config.types/conftest.c:11:1: error: unknown type name '__int64' __int64 a;; ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ============================================================================================= TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ============================================================================================= TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ============================================================================================= TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ============================================================================================= TESTING: checkPID from config.types(config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ============================================================================================= TESTING: checkUID from config.types(config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.types/conftest.c ============================================================================================= TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.types/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ============================================================================================= TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:92) Check for complex numbers in namespace std ===== Checking linker Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.compilers -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Executing: mpiCC -o /tmp/petsc-EVLAuB/config.types/conftest -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 /tmp/petsc-EVLAuB/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ============================================================================================= TESTING: checkConst from config.types(config/BuildSystem/config/types.py:103) Checks for working const, and if not found defines it to empty string ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" Defined "USING_64BIT_PTR" to "1" ============================================================================================= TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:193) ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" ===== Checking compiler Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.types -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ============================================================================================= TESTING: checkMaxPathLen from config.types(config/BuildSystem/config/types.py:215) Determining PETSC_MAX_PATH_LEN ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.types /tmp/petsc-EVLAuB/config.types/conftest.c Defined "MAX_PATH_LEN" to "4096" child config.types 2.302798 ============================================================================================= TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.001050 ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:282) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-EVLAuB/config.libraries/conftest.o: undefined reference to symbol 'log10@@GLIBC_2.17' //usr/lib64/libm.so.6: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-EVLAuB/config.libraries/conftest.o: undefined reference to symbol 'log10@@GLIBC_2.17' //usr/lib64/libm.so.6: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-EVLAuB/config.libraries/conftest.o: undefined reference to symbol 'log10@@GLIBC_2.17' //usr/lib64/libm.so.6: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status: Checking for functions [sin floor log10 pow] in library ['m'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" CheckMath: using math library ['libm.a'] ============================================================================================= TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:301) Check for erf() in libm, the math library Checking for functions [erf] in library ['libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" erf() found Defined "HAVE_ERF" to "1" ============================================================================================= TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:310) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library ['libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" tgamma() found Defined "HAVE_TGAMMA" to "1" ============================================================================================= TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:319) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library ['libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" lgamma() found Defined "HAVE_LGAMMA" to "1" ============================================================================================= TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:332) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library ['libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" Defined "HAVE_FENV_H" to "1" ============================================================================================= TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:340) Check for log2() in libm, the math library Checking for functions [log2] in library ['libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" log2() found Defined "HAVE_LOG2" to "1" ============================================================================================= TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:349) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lstdc++ -ldl realtime functions are linked in by default ============================================================================================= TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:365) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -ldl -lstdc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 5.048083 ============================================================================================= TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:38) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Linker output before filtering: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status: Linker output before filtering: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status: Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status Checking for functions [ADIOI_BGL_Open] in library [''] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ============================================================================================= TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:99) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.763142 child config.atomics 0.000008 ============================================================================================= TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated.: ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.functions/conftest.c:9:4: error: #error "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^~~~~ /tmp/petsc-EVLAuB/config.functions/conftest.c: In function 'main': /tmp/petsc-EVLAuB/config.functions/conftest.c:13:30: warning: implicit declaration of function 'sysinfo' [-Wimplicit-function-declaration] char buf[10]; long count=10; sysinfo(1, buf, count); ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_SYS_SYSINFO_H # include #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ============================================================================================= TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ============================================================================================= TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MEMMOVE" to "1" ============================================================================================= TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value ===== Checking linker Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Executing: mpiCC -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Defined "SIGNAL_CAST" to " " ============================================================================================= TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.functions/conftest.c: In function 'main': /tmp/petsc-EVLAuB/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be int ierr; void *p; ierr = free(p); return 0; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VA_COPY" to "1" ============================================================================================= TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _access snprintf realpath dlsym bzero _getcwd _pipe getwd uname _lseek sleep _sleep lseek usleep dlclose gethostname clock access _snprintf dlerror fork getpagesize sbreak memalign getcwd gethostbyname readlink _set_output_format PXFGETARG strcasecmp dlopen fpresetsticky drand48 socket popen getrusage _mkdir time fpsetsticky stricmp] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.functions/conftest.c:16:6: warning: conflicting types for built-in function 'snprintf' char snprintf(); ^~~~~~~~ /tmp/petsc-EVLAuB/config.functions/conftest.c:19:6: warning: conflicting types for built-in function 'bzero' char bzero(); ^~~~~ /tmp/petsc-EVLAuB/config.functions/conftest.c:35:6: warning: conflicting types for built-in function 'fork' char fork(); ^~~~ /tmp/petsc-EVLAuB/config.functions/conftest.c:44:6: warning: conflicting types for built-in function 'strcasecmp' char strcasecmp(); ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _access(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char _pipe(); char getwd(); char uname(); char _lseek(); char sleep(); char _sleep(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char access(); char _snprintf(); char dlerror(); char fork(); char getpagesize(); char sbreak(); char memalign(); char getcwd(); char gethostbyname(); char readlink(); char _set_output_format(); char PXFGETARG(); char strcasecmp(); char dlopen(); char fpresetsticky(); char drand48(); char socket(); char popen(); char getrusage(); char _mkdir(); char time(); char fpsetsticky(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:119: warning: the `getwd' function is dangerous and should not be used. /tmp/petsc-EVLAuB/config.functions/conftest.c:77: undefined reference to `_access' /tmp/petsc-EVLAuB/config.functions/conftest.c:107: undefined reference to `_getcwd' /tmp/petsc-EVLAuB/config.functions/conftest.c:113: undefined reference to `_pipe' /tmp/petsc-EVLAuB/config.functions/conftest.c:131: undefined reference to `_lseek' /tmp/petsc-EVLAuB/config.functions/conftest.c:143: undefined reference to `_sleep' /tmp/petsc-EVLAuB/config.functions/conftest.c:185: undefined reference to `_snprintf' /tmp/petsc-EVLAuB/config.functions/conftest.c:209: undefined reference to `sbreak' /tmp/petsc-EVLAuB/config.functions/conftest.c:239: undefined reference to `_set_output_format' /tmp/petsc-EVLAuB/config.functions/conftest.c:245: undefined reference to `PXFGETARG' /tmp/petsc-EVLAuB/config.functions/conftest.c:263: undefined reference to `fpresetsticky' /tmp/petsc-EVLAuB/config.functions/conftest.c:293: undefined reference to `_mkdir' /tmp/petsc-EVLAuB/config.functions/conftest.c:305: undefined reference to `fpsetsticky' /tmp/petsc-EVLAuB/config.functions/conftest.c:311: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:119: warning: the `getwd' function is dangerous and should not be used. /tmp/petsc-EVLAuB/config.functions/conftest.c:77: undefined reference to `_access' /tmp/petsc-EVLAuB/config.functions/conftest.c:107: undefined reference to `_getcwd' /tmp/petsc-EVLAuB/config.functions/conftest.c:113: undefined reference to `_pipe' /tmp/petsc-EVLAuB/config.functions/conftest.c:131: undefined reference to `_lseek' /tmp/petsc-EVLAuB/config.functions/conftest.c:143: undefined reference to `_sleep' /tmp/petsc-EVLAuB/config.functions/conftest.c:185: undefined reference to `_snprintf' /tmp/petsc-EVLAuB/config.functions/conftest.c:209: undefined reference to `sbreak' /tmp/petsc-EVLAuB/config.functions/conftest.c:239: undefined reference to `_set_output_format' /tmp/petsc-EVLAuB/config.functions/conftest.c:245: undefined reference to `PXFGETARG' /tmp/petsc-EVLAuB/config.functions/conftest.c:263: undefined reference to `fpresetsticky' /tmp/petsc-EVLAuB/config.functions/conftest.c:293: undefined reference to `_mkdir' /tmp/petsc-EVLAuB/config.functions/conftest.c:305: undefined reference to `fpsetsticky' /tmp/petsc-EVLAuB/config.functions/conftest.c:311: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:119: warning: the `getwd' function is dangerous and should not be used. /tmp/petsc-EVLAuB/config.functions/conftest.c:77: undefined reference to `_access' /tmp/petsc-EVLAuB/config.functions/conftest.c:107: undefined reference to `_getcwd' /tmp/petsc-EVLAuB/config.functions/conftest.c:113: undefined reference to `_pipe' /tmp/petsc-EVLAuB/config.functions/conftest.c:131: undefined reference to `_lseek' /tmp/petsc-EVLAuB/config.functions/conftest.c:143: undefined reference to `_sleep' /tmp/petsc-EVLAuB/config.functions/conftest.c:185: undefined reference to `_snprintf' /tmp/petsc-EVLAuB/config.functions/conftest.c:209: undefined reference to `sbreak' /tmp/petsc-EVLAuB/config.functions/conftest.c:239: undefined reference to `_set_output_format' /tmp/petsc-EVLAuB/config.functions/conftest.c:245: undefined reference to `PXFGETARG' /tmp/petsc-EVLAuB/config.functions/conftest.c:263: undefined reference to `fpresetsticky' /tmp/petsc-EVLAuB/config.functions/conftest.c:293: undefined reference to `_mkdir' /tmp/petsc-EVLAuB/config.functions/conftest.c:305: undefined reference to `fpsetsticky' /tmp/petsc-EVLAuB/config.functions/conftest.c:311: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status: Checking for functions [rand getdomainname realpath dlsym bzero uname usleep dlclose gethostname clock dlerror] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.functions/conftest.c:17:6: warning: conflicting types for built-in function 'bzero' char bzero(); ^~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char dlerror(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_DLERROR" to "1" Checking for functions [fork getpagesize memalign gethostbyname readlink strcasecmp dlopen drand48 socket popen getrusage time] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'fork' char fork(); ^~~~ /tmp/petsc-EVLAuB/config.functions/conftest.c:18:6: warning: conflicting types for built-in function 'strcasecmp' char strcasecmp(); ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char memalign(); char gethostbyname(); char readlink(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char popen(); char getrusage(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_access] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_access' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_access' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_access' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status: Checking for functions [snprintf] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'snprintf' char snprintf(); ^~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_getcwd' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_getcwd' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_getcwd' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status: Checking for functions [_pipe] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_pipe' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_pipe' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_pipe' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status: Checking for functions [getwd] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Linker output before filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. : Linker output after filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used.: Checking for functions [_lseek] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_lseek' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_lseek' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_lseek' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status: Checking for functions [sleep] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_sleep] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_sleep' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_sleep' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_sleep' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status: Checking for functions [lseek] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_snprintf' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_snprintf' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_snprintf' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status: Checking for functions [sbreak] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `sbreak' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `sbreak' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `sbreak' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status: Checking for functions [getcwd] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_set_output_format' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_set_output_format' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_set_output_format' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status: Checking for functions [PXFGETARG] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `PXFGETARG' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `PXFGETARG' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `PXFGETARG' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status: Checking for functions [fpresetsticky] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `fpresetsticky' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `fpresetsticky' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `fpresetsticky' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status: Checking for functions [_mkdir] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_mkdir' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_mkdir' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `_mkdir' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status: Checking for functions [fpsetsticky] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `fpsetsticky' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `fpsetsticky' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `fpsetsticky' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status: Checking for functions [stricmp] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.functions/conftest.o: In function `main': /tmp/petsc-EVLAuB/config.functions/conftest.c:24: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.functions/conftest' collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.functions/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.functions/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 12.144373 ============================================================================================= TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() child config.utilities.getResidentSetSize 0.001265 ============================================================================================= TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Checking for functions [] in library [''] [] ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.F90 Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Executing: mpifort -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" child config.utilities.fortranCommandLine 0.389333 ============================================================================================= TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated.: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated.: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated.: child config.utilities.FPTrap 0.115481 ============================================================================================= TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.functions -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.utilities.featureTestMacros/conftest.c:4:20: fatal error: sysctl.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info));; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 0.270499 ============================================================================================= TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ============================================================================================= TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ============================================================================================= TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ============================================================================================= TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } ===== Checking linker Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: mpiCC -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } ===== Checking linker Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.missing -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: mpiCC -o /tmp/petsc-EVLAuB/config.utilities.missing/conftest -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 /tmp/petsc-EVLAuB/config.utilities.missing/conftest.o -lstdc++ -ldl child config.utilities.missing 2.301045 ============================================================================================= TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:34) ============================================================================================= TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:49) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Executing: mpicc -v Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ============================================================================================= TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:94) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ============================================================================================= TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:100) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ============================================================================================= TESTING: checkSymbolResolution from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:109) Checks that dladdr() works ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.options.sharedLibraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.options.sharedLibraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info)); ; return 0; } Defined "HAVE_DLADDR" to "1" Checking for header: cxxabi.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory #include ^ compilation terminated.: child PETSc.options.sharedLibraries 0.147842 ============================================================================================= TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/PETSc.options.scalarTypes/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-EVLAuB/PETSc.options.scalarTypes/conftest.o: undefined reference to symbol '__fpclassify@@GLIBC_2.17' //usr/lib64/libm.so.6: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-EVLAuB/PETSc.options.scalarTypes/conftest.o: undefined reference to symbol '__fpclassify@@GLIBC_2.17' //usr/lib64/libm.so.6: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-EVLAuB/PETSc.options.scalarTypes/conftest.o: undefined reference to symbol '__fpclassify@@GLIBC_2.17' //usr/lib64/libm.so.6: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status: ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/PETSc.options.scalarTypes/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNAN" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/PETSc.options.scalarTypes/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISINF" to "1" ============================================================================================= TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.libraries/conftest.c:4:22: fatal error: quadmath.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 1.240378 ============================================================================================= TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mkdir...not found Checking for program /sw/summit/xalt/1.2.1/bin/mkdir...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/mkdir...not found Checking for program /sw/summit/forge/20.0.1/bin/mkdir...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mkdir...not found Checking for program /sw/summit/gcc/6.4.0/bin/mkdir...not found Checking for program /sw/summit/cuda/10.1.243/bin/mkdir...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/mkdir...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/mkdir...not found Checking for program /sw/sources/hpss/bin/mkdir...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/mkdir...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/mkdir...not found Checking for program /opt/ibm/csm/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ============================================================================================= TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /sw/sources/lsf-tools/2.0/summit/bin/autoreconf...not found Checking for program /sw/summit/xalt/1.2.1/bin/autoreconf...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/autoreconf...not found Checking for program /sw/summit/forge/20.0.1/bin/autoreconf...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/autoreconf...not found Checking for program /sw/summit/gcc/6.4.0/bin/autoreconf...not found Checking for program /sw/summit/cuda/10.1.243/bin/autoreconf...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/autoreconf...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/autoreconf...not found Checking for program /sw/sources/hpss/bin/autoreconf...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/autoreconf...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/autoreconf...not found Checking for program /opt/ibm/csm/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found Executing: ['/usr/bin/autoreconf'] autoreconf test successful! Checking for program /sw/sources/lsf-tools/2.0/summit/bin/libtoolize...not found Checking for program /sw/summit/xalt/1.2.1/bin/libtoolize...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/libtoolize...not found Checking for program /sw/summit/forge/20.0.1/bin/libtoolize...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/libtoolize...not found Checking for program /sw/summit/gcc/6.4.0/bin/libtoolize...not found Checking for program /sw/summit/cuda/10.1.243/bin/libtoolize...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/libtoolize...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/libtoolize...not found Checking for program /sw/sources/hpss/bin/libtoolize...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/libtoolize...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/libtoolize...not found Checking for program /opt/ibm/csm/bin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/bin/libtoolize...found ============================================================================================= TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /sw/sources/lsf-tools/2.0/summit/bin/bash...not found Checking for program /sw/summit/xalt/1.2.1/bin/bash...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/bash...not found Checking for program /sw/summit/forge/20.0.1/bin/bash...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/bash...not found Checking for program /sw/summit/gcc/6.4.0/bin/bash...not found Checking for program /sw/summit/cuda/10.1.243/bin/bash...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/bash...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/bash...not found Checking for program /sw/sources/hpss/bin/bash...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/bash...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/bash...not found Checking for program /opt/ibm/csm/bin/bash...not found Checking for program /usr/local/bin/bash...not found Checking for program /usr/bin/bash...found Defined make macro "SHELL" to "/usr/bin/bash" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/sed...not found Checking for program /sw/summit/xalt/1.2.1/bin/sed...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/sed...not found Checking for program /sw/summit/forge/20.0.1/bin/sed...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/sed...not found Checking for program /sw/summit/gcc/6.4.0/bin/sed...not found Checking for program /sw/summit/cuda/10.1.243/bin/sed...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/sed...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/sed...not found Checking for program /sw/sources/hpss/bin/sed...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/sed...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/sed...not found Checking for program /opt/ibm/csm/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-EVLAuB/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mv...not found Checking for program /sw/summit/xalt/1.2.1/bin/mv...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/mv...not found Checking for program /sw/summit/forge/20.0.1/bin/mv...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mv...not found Checking for program /sw/summit/gcc/6.4.0/bin/mv...not found Checking for program /sw/summit/cuda/10.1.243/bin/mv...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/mv...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/mv...not found Checking for program /sw/sources/hpss/bin/mv...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/mv...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/mv...not found Checking for program /opt/ibm/csm/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/cp...not found Checking for program /sw/summit/xalt/1.2.1/bin/cp...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/cp...not found Checking for program /sw/summit/forge/20.0.1/bin/cp...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/cp...not found Checking for program /sw/summit/gcc/6.4.0/bin/cp...not found Checking for program /sw/summit/cuda/10.1.243/bin/cp...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cp...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/cp...not found Checking for program /sw/sources/hpss/bin/cp...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/cp...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/cp...not found Checking for program /opt/ibm/csm/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/grep...not found Checking for program /sw/summit/xalt/1.2.1/bin/grep...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/grep...not found Checking for program /sw/summit/forge/20.0.1/bin/grep...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/grep...not found Checking for program /sw/summit/gcc/6.4.0/bin/grep...not found Checking for program /sw/summit/cuda/10.1.243/bin/grep...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/grep...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/grep...not found Checking for program /sw/sources/hpss/bin/grep...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/grep...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/grep...not found Checking for program /opt/ibm/csm/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/rm...not found Checking for program /sw/summit/xalt/1.2.1/bin/rm...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/rm...not found Checking for program /sw/summit/forge/20.0.1/bin/rm...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/rm...not found Checking for program /sw/summit/gcc/6.4.0/bin/rm...not found Checking for program /sw/summit/cuda/10.1.243/bin/rm...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/rm...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/rm...not found Checking for program /sw/sources/hpss/bin/rm...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/rm...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/rm...not found Checking for program /opt/ibm/csm/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/diff...not found Checking for program /sw/summit/xalt/1.2.1/bin/diff...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/diff...not found Checking for program /sw/summit/forge/20.0.1/bin/diff...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/diff...not found Checking for program /sw/summit/gcc/6.4.0/bin/diff...not found Checking for program /sw/summit/cuda/10.1.243/bin/diff...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/diff...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/diff...not found Checking for program /sw/sources/hpss/bin/diff...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/diff...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/diff...not found Checking for program /opt/ibm/csm/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-EVLAuB/config.programs/diff1" "/tmp/petsc-EVLAuB/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of the specific search path Warning accessing /usr/ucb gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Warning accessing /usr/usb gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Defined make macro "PYTHON" to "/usr/bin/python" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/m4...not found Checking for program /sw/summit/xalt/1.2.1/bin/m4...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/m4...not found Checking for program /sw/summit/forge/20.0.1/bin/m4...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/m4...not found Checking for program /sw/summit/gcc/6.4.0/bin/m4...not found Checking for program /sw/summit/cuda/10.1.243/bin/m4...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/m4...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/m4...not found Checking for program /sw/sources/hpss/bin/m4...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/m4...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/m4...not found Checking for program /opt/ibm/csm/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 1.892479 ============================================================================================= TESTING: consistencyChecks from config.packages.make(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.make(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default ============================================================================================= TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:96) Check Guesses for GNU make Executing: gmake --version stdout: GNU Make 3.82 Built for powerpc64le-redhat-linux-gnu Copyright (C) 2010 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Checking for program /sw/sources/lsf-tools/2.0/summit/bin/gmake...not found Checking for program /sw/summit/xalt/1.2.1/bin/gmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/gmake...not found Checking for program /sw/summit/forge/20.0.1/bin/gmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/gmake...not found Checking for program /sw/summit/gcc/6.4.0/bin/gmake...not found Checking for program /sw/summit/cuda/10.1.243/bin/gmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/gmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/gmake...not found Checking for program /sw/sources/hpss/bin/gmake...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/gmake...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/gmake...not found Checking for program /opt/ibm/csm/bin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...found Defined make macro "MAKE" to "/usr/bin/gmake" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/make...not found Checking for program /sw/summit/xalt/1.2.1/bin/make...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/make...not found Checking for program /sw/summit/forge/20.0.1/bin/make...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/make...not found Checking for program /sw/summit/gcc/6.4.0/bin/make...not found Checking for program /sw/summit/cuda/10.1.243/bin/make...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/make...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/make...not found Checking for program /sw/sources/hpss/bin/make...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/make...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/make...not found Checking for program /opt/ibm/csm/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE_USER" to "make" ============================================================================================= ***** WARNING: You have a version of GNU make older than 4.0. It will work, but may not support all the parallel testing options. You can install the latest GNU make with your package manager, such as brew or macports, or use the --download-make option to get the latest GNU make ***** ============================================================================================= ============================================================================================= TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:150) Setup other GNU make stuff Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ============================================================================================= TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:197) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 128 cores: using make_np = 59 Defined make macro "MAKE_NP" to "59" Defined make macro "MAKE_TEST_NP" to "49" Defined make macro "MAKE_LOAD" to "166.4" Defined make macro "NPMAX" to "128" child config.packages.make 0.018528 ============================================================================================= TESTING: consistencyChecks from config.packages.X(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.X(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.X 0.001221 ============================================================================================= TESTING: consistencyChecks from config.packages.hwloc(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.hwloc 0.001421 ============================================================================================= TESTING: consistencyChecks from config.packages.valgrind(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search VALGRIND: ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Found header files [] in ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking include with compiler flags var CPPFLAGS ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated.: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Found header files [] in ['/usr/local/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers -I/usr/local/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated.: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Found header files [] in ['/usr/local/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers -I/usr/local/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib /tmp/petsc-EVLAuB/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conftest.c" # 1 "/tmp/petsc-EVLAuB/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 # 1 "/tmp/petsc-EVLAuB/config.headers/conffix.h" 1 # 3 "/tmp/petsc-EVLAuB/config.headers/conftest.c" 2 stderr: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. : Preprocess output after filtering: /tmp/petsc-EVLAuB/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated.: VALGRIND: SearchDir DirPath not found.. skipping: /opt/local Executing: uname -s stdout: Linux Detected Linux OS ============================================================================================= It appears you do not have valgrind installed on your system. We HIGHLY recommend you install it from www.valgrind.org Or install valgrind-devel or equivalent using your package manager. Then rerun ./configure ============================================================================================= child config.packages.valgrind 0.127909 ============================================================================================= TESTING: consistencyChecks from config.packages.thrust(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.thrust 0.001586 ============================================================================================= TESTING: consistencyChecks from config.packages.cuda(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.cuda(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.cuda(config/BuildSystem/config/packages/cuda.py:139) Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/nvcc...not found Checking for program /sw/summit/forge/20.0.1/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/nvcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/nvcc...found Defined make macro "SYSTEMNVCC" to "/sw/summit/cuda/10.1.243/bin/nvcc" ================================================================================== Checking for a functional cuda Checking for library in Compiler specific search CUDA: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Linker output before filtering: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_cublasInit': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `cublasInit' /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_cufftDestroy': /tmp/petsc-EVLAuB/config.libraries/conftest.c:7: undefined reference to `cufftDestroy' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_cublasInit': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `cublasInit' /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_cufftDestroy': /tmp/petsc-EVLAuB/config.libraries/conftest.c:7: undefined reference to `cufftDestroy' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status: Checking for functions [cublasInit cufftDestroy] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_cublasInit': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `cublasInit' /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_cufftDestroy': /tmp/petsc-EVLAuB/config.libraries/conftest.c:7: undefined reference to `cufftDestroy' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status Checking for library in Compiler specific search CUDA: ['libcudart.a', 'libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Linker output before filtering: /usr/bin/ld: cannot find -lcudart /usr/bin/ld: cannot find -lcufft /usr/bin/ld: cannot find -lcublas /usr/bin/ld: cannot find -lcusparse /usr/bin/ld: cannot find -lcusolver /usr/bin/ld: cannot find -lcurand collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lcudart /usr/bin/ld: cannot find -lcufft /usr/bin/ld: cannot find -lcublas /usr/bin/ld: cannot find -lcusparse /usr/bin/ld: cannot find -lcusolver /usr/bin/ld: cannot find -lcurand collect2: error: ld returned 1 exit status: Checking for functions [cublasInit cufftDestroy] in library ['libcudart.a', 'libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lcudart /usr/bin/ld: cannot find -lcufft /usr/bin/ld: cannot find -lcublas /usr/bin/ld: cannot find -lcusparse /usr/bin/ld: cannot find -lcusolver /usr/bin/ld: cannot find -lcurand collect2: error: ld returned 1 exit status Checking for library in Compiler specific search CUDA: ['cudart.lib', 'cufft.lib', 'cublas.lib', 'cusparse.lib', 'cusolver.lib', 'curand.lib'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Linker output before filtering: gcc: error: cudart.lib: No such file or directory gcc: error: cufft.lib: No such file or directory gcc: error: cublas.lib: No such file or directory gcc: error: cusparse.lib: No such file or directory gcc: error: cusolver.lib: No such file or directory gcc: error: curand.lib: No such file or directory : Linker output after filtering: gcc: error: cudart.lib: No such file or directory gcc: error: cufft.lib: No such file or directory gcc: error: cublas.lib: No such file or directory gcc: error: cusparse.lib: No such file or directory gcc: error: cusolver.lib: No such file or directory gcc: error: curand.lib: No such file or directory: Checking for functions [cublasInit cufftDestroy] in library ['cudart.lib', 'cufft.lib', 'cublas.lib', 'cusparse.lib', 'cusolver.lib', 'curand.lib'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o cudart.lib cufft.lib cublas.lib cusparse.lib cusolver.lib curand.lib -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: gcc: error: cudart.lib: No such file or directory gcc: error: cufft.lib: No such file or directory gcc: error: cublas.lib: No such file or directory gcc: error: cusparse.lib: No such file or directory gcc: error: cusolver.lib: No such file or directory gcc: error: curand.lib: No such file or directory CUDA: DirPath not found.. skipping: /sw/summit/cuda/10.1.243/lib Checking for library in Package specific search directory CUDA: ['/sw/summit/cuda/10.1.243/lib64/libcudart.a', 'libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a'] Contents of /sw/summit/cuda/10.1.243: ['rpm', 'LICENSE', 'README', 'bin', 'compat', 'doc', 'extras', 'include', 'lib64', 'libnsight', 'libnvvp', 'nsightee_plugins', 'nvml', 'nvvm', 'samples', 'share', 'targets', 'tools', 'version.txt', 'nsight-systems', 'nsight-compute'] Contents /sw/summit/cuda/10.1.243/lib64: ['libcudart.so.10.1', 'libcudart.so.10.1.243', 'libcudadevrt.a', 'libcudart.so', 'libcudart_static.a', 'libculibos.a', 'libcufft.so.10', 'libcufft.so.10.1.1.243', 'libcufftw.so.10', 'libcufftw.so.10.1.1.243', 'libcufft.so', 'libcufft_static.a', 'libcufft_static_nocallback.a', 'libcufftw.so', 'libcufftw_static.a', 'stubs', 'libcurand.so.10', 'libcurand.so.10.1.1.243', 'libcurand.so', 'libcurand_static.a', 'libcusolver.so.10', 'libcusolver.so.10.2.0.243', 'libcusolverMg.so.10', 'libcusolverMg.so.10.2.0.243', 'libcusolver.so', 'libcusolverMg.so', 'libcusolver_static.a', 'liblapack_static.a', 'libmetis_static.a', 'libcusparse.so.10', 'libcusparse.so.10.3.0.243', 'libcusparse.so', 'libcusparse_static.a', 'libnppc.so.10', 'libnppc.so.10.2.0.243', 'libnppial.so.10', 'libnppial.so.10.2.0.243', 'libnppicc.so.10', 'libnppicc.so.10.2.0.243', 'libnppicom.so.10', 'libnppicom.so.10.2.0.243', 'libnppidei.so.10', 'libnppidei.so.10.2.0.243', 'libnppif.so.10', 'libnppif.so.10.2.0.243', 'libnppig.so.10', 'libnppig.so.10.2.0.243', 'libnppim.so.10', 'libnppim.so.10.2.0.243', 'libnppist.so.10', 'libnppist.so.10.2.0.243', 'libnppisu.so.10', 'libnppisu.so.10.2.0.243', 'libnppitc.so.10', 'libnppitc.so.10.2.0.243', 'libnpps.so.10', 'libnpps.so.10.2.0.243', 'libnppc.so', 'libnppc_static.a', 'libnppial.so', 'libnppial_static.a', 'libnppicc.so', 'libnppicc_static.a', 'libnppicom.so', 'libnppicom_static.a', 'libnppidei.so', 'libnppidei_static.a', 'libnppif.so', 'libnppif_static.a', 'libnppig.so', 'libnppig_static.a', 'libnppim.so', 'libnppim_static.a', 'libnppist.so', 'libnppist_static.a', 'libnppisu.so', 'libnppisu_static.a', 'libnppitc.so', 'libnppitc_static.a', 'libnpps.so', 'libnpps_static.a', 'libnvgraph.so.10', 'libnvgraph.so.10.1.243', 'libnvgraph.so', 'libnvgraph_static.a', 'libnvjpeg.so.10', 'libnvjpeg.so.10.3.0.243', 'libnvjpeg.so', 'libnvjpeg_static.a', 'libaccinj64.so', 'libaccinj64.so.10.1', 'libaccinj64.so.10.1.243', 'libcuinj64.so', 'libcuinj64.so.10.1', 'libcuinj64.so.10.1.243', 'libnvrtc-builtins.so', 'libnvrtc-builtins.so.10.1', 'libnvrtc-builtins.so.10.1.243', 'libnvrtc.so.10.1', 'libnvrtc.so.10.1.243', 'libnvrtc.so', 'libnvToolsExt.so', 'libnvToolsExt.so.1', 'libnvToolsExt.so.1.0.0', 'libcublas.so', 'libcublas.so.10', 'libcublas.so.10.2.1.243', 'libcublasLt.so', 'libcublasLt.so.10', 'libcublasLt.so.10.2.1.243', 'libcublasLt_static.a', 'libcublas_static.a', 'libcudnn.so', 'libnvblas.so', 'libnvblas.so.10', 'libnvblas.so.10.2.1.243', 'libcudnn.so.8', 'libcudnn.so.8.0.5', 'libcudnn_adv_infer.so', 'libcudnn_adv_infer.so.8', 'libcudnn_adv_infer.so.8.0.5', 'libcudnn_adv_train.so', 'libcudnn_adv_train.so.8', 'libcudnn_adv_train.so.8.0.5', 'libcudnn_cnn_infer.so', 'libcudnn_cnn_infer.so.8', 'libcudnn_cnn_infer.so.8.0.5', 'libcudnn_cnn_train.so', 'libcudnn_cnn_train.so.8', 'libcudnn_cnn_train.so.8.0.5', 'libcudnn_ops_infer.so', 'libcudnn_ops_infer.so.8', 'libcudnn_ops_infer.so.8.0.5', 'libcudnn_ops_train.so', 'libcudnn_ops_train.so.8', 'libcudnn_ops_train.so.8.0.5', 'libcudnn_static.a', 'libnccl.so.2.8.3', 'libnccl.so.2', 'pkgconfig', 'libnccl.so', 'libnccl_static.a'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [cublasInit cufftDestroy] in library ['/sw/summit/cuda/10.1.243/lib64/libcudart.a', 'libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a'] [] Checking directory of requested libraries:/sw/summit/cuda/10.1.243/lib64 for first library:libcudart. Files in directory:['libcudart.so.10.1', 'libcudart.so.10.1.243', 'libcudadevrt.a', 'libcudart.so', 'libcudart_static.a', 'libculibos.a', 'libcufft.so.10', 'libcufft.so.10.1.1.243', 'libcufftw.so.10', 'libcufftw.so.10.1.1.243', 'libcufft.so', 'libcufft_static.a', 'libcufft_static_nocallback.a', 'libcufftw.so', 'libcufftw_static.a', 'stubs', 'libcurand.so.10', 'libcurand.so.10.1.1.243', 'libcurand.so', 'libcurand_static.a', 'libcusolver.so.10', 'libcusolver.so.10.2.0.243', 'libcusolverMg.so.10', 'libcusolverMg.so.10.2.0.243', 'libcusolver.so', 'libcusolverMg.so', 'libcusolver_static.a', 'liblapack_static.a', 'libmetis_static.a', 'libcusparse.so.10', 'libcusparse.so.10.3.0.243', 'libcusparse.so', 'libcusparse_static.a', 'libnppc.so.10', 'libnppc.so.10.2.0.243', 'libnppial.so.10', 'libnppial.so.10.2.0.243', 'libnppicc.so.10', 'libnppicc.so.10.2.0.243', 'libnppicom.so.10', 'libnppicom.so.10.2.0.243', 'libnppidei.so.10', 'libnppidei.so.10.2.0.243', 'libnppif.so.10', 'libnppif.so.10.2.0.243', 'libnppig.so.10', 'libnppig.so.10.2.0.243', 'libnppim.so.10', 'libnppim.so.10.2.0.243', 'libnppist.so.10', 'libnppist.so.10.2.0.243', 'libnppisu.so.10', 'libnppisu.so.10.2.0.243', 'libnppitc.so.10', 'libnppitc.so.10.2.0.243', 'libnpps.so.10', 'libnpps.so.10.2.0.243', 'libnppc.so', 'libnppc_static.a', 'libnppial.so', 'libnppial_static.a', 'libnppicc.so', 'libnppicc_static.a', 'libnppicom.so', 'libnppicom_static.a', 'libnppidei.so', 'libnppidei_static.a', 'libnppif.so', 'libnppif_static.a', 'libnppig.so', 'libnppig_static.a', 'libnppim.so', 'libnppim_static.a', 'libnppist.so', 'libnppist_static.a', 'libnppisu.so', 'libnppisu_static.a', 'libnppitc.so', 'libnppitc_static.a', 'libnpps.so', 'libnpps_static.a', 'libnvgraph.so.10', 'libnvgraph.so.10.1.243', 'libnvgraph.so', 'libnvgraph_static.a', 'libnvjpeg.so.10', 'libnvjpeg.so.10.3.0.243', 'libnvjpeg.so', 'libnvjpeg_static.a', 'libaccinj64.so', 'libaccinj64.so.10.1', 'libaccinj64.so.10.1.243', 'libcuinj64.so', 'libcuinj64.so.10.1', 'libcuinj64.so.10.1.243', 'libnvrtc-builtins.so', 'libnvrtc-builtins.so.10.1', 'libnvrtc-builtins.so.10.1.243', 'libnvrtc.so.10.1', 'libnvrtc.so.10.1.243', 'libnvrtc.so', 'libnvToolsExt.so', 'libnvToolsExt.so.1', 'libnvToolsExt.so.1.0.0', 'libcublas.so', 'libcublas.so.10', 'libcublas.so.10.2.1.243', 'libcublasLt.so', 'libcublasLt.so.10', 'libcublasLt.so.10.2.1.243', 'libcublasLt_static.a', 'libcublas_static.a', 'libcudnn.so', 'libnvblas.so', 'libnvblas.so.10', 'libnvblas.so.10.2.1.243', 'libcudnn.so.8', 'libcudnn.so.8.0.5', 'libcudnn_adv_infer.so', 'libcudnn_adv_infer.so.8', 'libcudnn_adv_infer.so.8.0.5', 'libcudnn_adv_train.so', 'libcudnn_adv_train.so.8', 'libcudnn_adv_train.so.8.0.5', 'libcudnn_cnn_infer.so', 'libcudnn_cnn_infer.so.8', 'libcudnn_cnn_infer.so.8.0.5', 'libcudnn_cnn_train.so', 'libcudnn_cnn_train.so.8', 'libcudnn_cnn_train.so.8.0.5', 'libcudnn_ops_infer.so', 'libcudnn_ops_infer.so.8', 'libcudnn_ops_infer.so.8.0.5', 'libcudnn_ops_train.so', 'libcudnn_ops_train.so.8', 'libcudnn_ops_train.so.8.0.5', 'libcudnn_static.a', 'libnccl.so.2.8.3', 'libnccl.so.2', 'pkgconfig', 'libnccl.so', 'libnccl_static.a'] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -Wl,-rpath,/sw/summit/cuda/10.1.243/lib64 -L/sw/summit/cuda/10.1.243/lib64 -lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand -lstdc++ -ldl Defined "HAVE_LIBCUDART" to "1" Defined "HAVE_LIBCUFFT" to "1" Defined "HAVE_LIBCUBLAS" to "1" Defined "HAVE_LIBCUSPARSE" to "1" Defined "HAVE_LIBCUSOLVER" to "1" Defined "HAVE_LIBCURAND" to "1" Checking for functions [cusolverDnDpotri] in library ['/sw/summit/cuda/10.1.243/lib64/libcudart.a', 'libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a'] [] Checking directory of requested libraries:/sw/summit/cuda/10.1.243/lib64 for first library:libcudart. Files in directory:['libcudart.so.10.1', 'libcudart.so.10.1.243', 'libcudadevrt.a', 'libcudart.so', 'libcudart_static.a', 'libculibos.a', 'libcufft.so.10', 'libcufft.so.10.1.1.243', 'libcufftw.so.10', 'libcufftw.so.10.1.1.243', 'libcufft.so', 'libcufft_static.a', 'libcufft_static_nocallback.a', 'libcufftw.so', 'libcufftw_static.a', 'stubs', 'libcurand.so.10', 'libcurand.so.10.1.1.243', 'libcurand.so', 'libcurand_static.a', 'libcusolver.so.10', 'libcusolver.so.10.2.0.243', 'libcusolverMg.so.10', 'libcusolverMg.so.10.2.0.243', 'libcusolver.so', 'libcusolverMg.so', 'libcusolver_static.a', 'liblapack_static.a', 'libmetis_static.a', 'libcusparse.so.10', 'libcusparse.so.10.3.0.243', 'libcusparse.so', 'libcusparse_static.a', 'libnppc.so.10', 'libnppc.so.10.2.0.243', 'libnppial.so.10', 'libnppial.so.10.2.0.243', 'libnppicc.so.10', 'libnppicc.so.10.2.0.243', 'libnppicom.so.10', 'libnppicom.so.10.2.0.243', 'libnppidei.so.10', 'libnppidei.so.10.2.0.243', 'libnppif.so.10', 'libnppif.so.10.2.0.243', 'libnppig.so.10', 'libnppig.so.10.2.0.243', 'libnppim.so.10', 'libnppim.so.10.2.0.243', 'libnppist.so.10', 'libnppist.so.10.2.0.243', 'libnppisu.so.10', 'libnppisu.so.10.2.0.243', 'libnppitc.so.10', 'libnppitc.so.10.2.0.243', 'libnpps.so.10', 'libnpps.so.10.2.0.243', 'libnppc.so', 'libnppc_static.a', 'libnppial.so', 'libnppial_static.a', 'libnppicc.so', 'libnppicc_static.a', 'libnppicom.so', 'libnppicom_static.a', 'libnppidei.so', 'libnppidei_static.a', 'libnppif.so', 'libnppif_static.a', 'libnppig.so', 'libnppig_static.a', 'libnppim.so', 'libnppim_static.a', 'libnppist.so', 'libnppist_static.a', 'libnppisu.so', 'libnppisu_static.a', 'libnppitc.so', 'libnppitc_static.a', 'libnpps.so', 'libnpps_static.a', 'libnvgraph.so.10', 'libnvgraph.so.10.1.243', 'libnvgraph.so', 'libnvgraph_static.a', 'libnvjpeg.so.10', 'libnvjpeg.so.10.3.0.243', 'libnvjpeg.so', 'libnvjpeg_static.a', 'libaccinj64.so', 'libaccinj64.so.10.1', 'libaccinj64.so.10.1.243', 'libcuinj64.so', 'libcuinj64.so.10.1', 'libcuinj64.so.10.1.243', 'libnvrtc-builtins.so', 'libnvrtc-builtins.so.10.1', 'libnvrtc-builtins.so.10.1.243', 'libnvrtc.so.10.1', 'libnvrtc.so.10.1.243', 'libnvrtc.so', 'libnvToolsExt.so', 'libnvToolsExt.so.1', 'libnvToolsExt.so.1.0.0', 'libcublas.so', 'libcublas.so.10', 'libcublas.so.10.2.1.243', 'libcublasLt.so', 'libcublasLt.so.10', 'libcublasLt.so.10.2.1.243', 'libcublasLt_static.a', 'libcublas_static.a', 'libcudnn.so', 'libnvblas.so', 'libnvblas.so.10', 'libnvblas.so.10.2.1.243', 'libcudnn.so.8', 'libcudnn.so.8.0.5', 'libcudnn_adv_infer.so', 'libcudnn_adv_infer.so.8', 'libcudnn_adv_infer.so.8.0.5', 'libcudnn_adv_train.so', 'libcudnn_adv_train.so.8', 'libcudnn_adv_train.so.8.0.5', 'libcudnn_cnn_infer.so', 'libcudnn_cnn_infer.so.8', 'libcudnn_cnn_infer.so.8.0.5', 'libcudnn_cnn_train.so', 'libcudnn_cnn_train.so.8', 'libcudnn_cnn_train.so.8.0.5', 'libcudnn_ops_infer.so', 'libcudnn_ops_infer.so.8', 'libcudnn_ops_infer.so.8.0.5', 'libcudnn_ops_train.so', 'libcudnn_ops_train.so.8', 'libcudnn_ops_train.so.8.0.5', 'libcudnn_static.a', 'libnccl.so.2.8.3', 'libnccl.so.2', 'pkgconfig', 'libnccl.so', 'libnccl_static.a'] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cusolverDnDpotri(); static void _check_cusolverDnDpotri() { cusolverDnDpotri(); } int main() { _check_cusolverDnDpotri();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -Wl,-rpath,/sw/summit/cuda/10.1.243/lib64 -L/sw/summit/cuda/10.1.243/lib64 -lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand -lstdc++ -ldl Defined "HAVE_CUSOLVERDNDPOTRI" to "1" Checking for optional headers [] in Package specific search directory CUDA: ['/sw/summit/cuda/10.1.243/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/sw/summit/cuda/10.1.243/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Found header files [] in ['/sw/summit/cuda/10.1.243/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking for headers ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'curand.h', 'thrust/version.h'] in Package specific search directory CUDA: ['/sw/summit/cuda/10.1.243/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'curand.h', 'thrust/version.h'] in ['/sw/summit/cuda/10.1.243/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers -I/sw/summit/cuda/10.1.243/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers -I/sw/summit/cuda/10.1.243/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers -I/sw/summit/cuda/10.1.243/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers -I/sw/summit/cuda/10.1.243/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers -I/sw/summit/cuda/10.1.243/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers -I/sw/summit/cuda/10.1.243/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'curand.h', 'thrust/version.h'] in ['/sw/summit/cuda/10.1.243/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking for size of type: teststruct ===== Checking compiler Executing: nvcc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -g -Xcompiler -lineinfo -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-EVLAuB/config.types/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include typedef struct {double a; int b;} teststruct; char assert_sizeof[(sizeof(teststruct)==16)*2-1]; Checking for size of type: teststruct ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include typedef struct {double a; int b;} teststruct; char assert_sizeof[(sizeof(teststruct)==16)*2-1]; Checking if sizeof(void*) in CUDA is the same as with regular compiler Checking for size of type: void * ===== Checking compiler Executing: nvcc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -g -Xcompiler -lineinfo -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-EVLAuB/config.types/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "CUDA_GENERATION" to "70" Defined "HAVE_CUDA" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "cuda.h" ;petscpkgver(CUDA_VERSION); Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.packages.cuda -I/sw/summit/cuda/10.1.243/include /tmp/petsc-EVLAuB/config.packages.cuda/conftest.c For cuda need 7.5 <= 10.1 <= Executing: nvcc -g -Xcompiler -lineinfo -Xcompiler -fPIC -gencode arch=compute_70,code=sm_70 --dryrun dummy.cu 2>&1 | grep D__CUDACC__ | head -1 | cut -f2 -d" " stdout: gcc Determined the compiler nvcc uses is gcc PETSc C compiler mpicc PETSc C++ compiler mpiCC No CUDA_CXXFLAGS available Defined make macro "CUDA_CXX" to "gcc" Executing: mpiCC --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and ============================================================================================= TESTING: checkVersion from config.packages.cuda(config/BuildSystem/config/package.py:1033) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "cuda.h" ;petscpkgver(CUDA_VERSION); Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.packages.cuda -I/sw/summit/cuda/10.1.243/include /tmp/petsc-EVLAuB/config.packages.cuda/conftest.c For cuda need 7.5 <= 10.1 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.cuda(config/BuildSystem/config/package.py:962) By default we don't care about checking if the library is shared child config.packages.cuda 3.590535 ============================================================================================= TESTING: consistencyChecks from config.packages.OpenMPI(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.001725 ============================================================================================= TESTING: consistencyChecks from config.packages.MPICH(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.001380 ============================================================================================= TESTING: consistencyChecks from config.packages.MPI(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:704) ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Compiler specific search MPI: ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Found header files [] in ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking for headers ['mpi.h'] in Compiler specific search MPI: ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking include with compiler flags var CPPFLAGS ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.packages.cuda -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['mpi.h'] in ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Defined "HAVE_MPI_F90MODULE_VISIBILITY" to "1" ============================================================================================= TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:550) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c:4:25: error: 'I_MPI_VERSION' undeclared here (not in a function) const char *mpich_ver = I_MPI_VERSION; ^~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c:4:17: error: 'I_MPI_NUMVERSION' undeclared here (not in a function) int mpich_ver = I_MPI_NUMVERSION; ^~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c:4:17: error: 'MVAPICH2_NUMVERSION' undeclared here (not in a function) int mpich_ver = MVAPICH2_NUMVERSION; ^~~~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c:4:17: error: 'MPICH_NUMVERSION' undeclared here (not in a function) int mpich_ver = MPICH_NUMVERSION; ^~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.packages.cuda -I/tmp/petsc-EVLAuB/config.packages.MPI /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Defined "HAVE_OMPI_MAJOR_VERSION" to "10" Defined "HAVE_OMPI_MINOR_VERSION" to "03" Defined "HAVE_OMPI_RELEASE_VERSION" to "01" ============================================================================================= TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:332) Check for functions added to the interface in MPI-2 ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={MPI_INT,MPI_DOUBLE}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -lstdc++ -ldl ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -lstdc++ -ldl ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -lstdc++ -ldl ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_ONE_SIDED" to "1" ============================================================================================= TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:379) Check for functions added to the interface in MPI-3 ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Win_allocate(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_attach(win,baseptr,size)); if (MPI_Win_create_dynamic(MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_FEATURE_DYNAMIC_WINDOW" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MPIX_CUDA_AWARE_SUPPORT) && MPIX_CUDA_AWARE_SUPPORT #else #error This OpenMPI is not CUDA-aware #endif int main() { ; return 0; } Defined "HAVE_MPI_GPU_AWARE" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_RGET" to "1" ============================================================================================= TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:177) Checking for location of mpiexec Checking for program /sw/sources/lsf-tools/2.0/summit/bin/jsrun...not found Checking for program /sw/summit/xalt/1.2.1/bin/jsrun...found Defined make macro "MPIEXEC" to "jsrun -g1" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/jsrun...not found Checking for program /sw/summit/xalt/1.2.1/bin/jsrun...found Defined make macro "MPIEXECEXECUTABLE" to "/sw/summit/xalt/1.2.1/bin/jsrun -g1" Running Executable with threads to time it out at 120 Executing: jsrun -g1 -n 1 printenv Unable to run jsrun -g1 with option "-n 1 printenv" This could be ok, some MPI implementations such as SGI produce a non-zero status with non-MPI programs Error: It is only possible to use js commands within a job allocation unless CSM is running 06-07-2021 15:40:06:349 89200 main: Error initializing RM connection. Exiting. Defined make macro "MPIEXEC" to "jsrun -g1" Checking for program /usr/libexec/ApplicationFirewall/socketfilterfw...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/socketfilterfw...not found Unable to find programs ['socketfilterfw'] providing listing of the specific search path Warning accessing /usr/libexec/ApplicationFirewall gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Checking for program /sw/sources/lsf-tools/2.0/summit/bin/hostname...not found Checking for program /sw/summit/xalt/1.2.1/bin/hostname...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/hostname...not found Checking for program /sw/summit/forge/20.0.1/bin/hostname...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/hostname...not found Checking for program /sw/summit/gcc/6.4.0/bin/hostname...not found Checking for program /sw/summit/cuda/10.1.243/bin/hostname...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/hostname...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/hostname...not found Checking for program /sw/sources/hpss/bin/hostname...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hostname...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hostname...not found Checking for program /opt/ibm/csm/bin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/bin/hostname...found Defined make macro "HOSTNAME" to "hostname" Running Executable with threads to time it out at 60 Executing: hostname stdout: login1 Return code from hostname: 0 Hostname works, running network checks Checking for program /sbin/ping...not found Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ping...not found Checking for program /sw/summit/xalt/1.2.1/bin/ping...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/ping...not found Checking for program /sw/summit/forge/20.0.1/bin/ping...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ping...not found Checking for program /sw/summit/gcc/6.4.0/bin/ping...not found Checking for program /sw/summit/cuda/10.1.243/bin/ping...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/ping...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ping...not found Checking for program /sw/sources/hpss/bin/ping...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ping...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ping...not found Checking for program /opt/ibm/csm/bin/ping...not found Checking for program /usr/local/bin/ping...not found Checking for program /usr/bin/ping...found Defined make macro "PING" to "ping" Executing: uname -s stdout: Linux Running Executable with threads to time it out at 60 Executing: ping -c 2 login1 Exception: while running ping skipping ping check Checking for program /sw/sources/lsf-tools/2.0/summit/bin/host...not found Checking for program /sw/summit/xalt/1.2.1/bin/host...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/host...not found Checking for program /sw/summit/forge/20.0.1/bin/host...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/host...not found Checking for program /sw/summit/gcc/6.4.0/bin/host...not found Checking for program /sw/summit/cuda/10.1.243/bin/host...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/host...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/host...not found Checking for program /sw/sources/hpss/bin/host...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/host...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/host...not found Checking for program /opt/ibm/csm/bin/host...not found Checking for program /usr/local/bin/host...not found Checking for program /usr/bin/host...found Defined make macro "HOST" to "host" Running Executable with threads to time it out at 60 Executing: host login1 stdout: Host login1 not found: 3(NXDOMAIN) Exception: while running host skipping host check Checking for program /usr/sbin/traceroute...not found Checking for program /sw/sources/lsf-tools/2.0/summit/bin/traceroute...not found Checking for program /sw/summit/xalt/1.2.1/bin/traceroute...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/traceroute...not found Checking for program /sw/summit/forge/20.0.1/bin/traceroute...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/traceroute...not found Checking for program /sw/summit/gcc/6.4.0/bin/traceroute...not found Checking for program /sw/summit/cuda/10.1.243/bin/traceroute...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/traceroute...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/traceroute...not found Checking for program /sw/sources/hpss/bin/traceroute...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/traceroute...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/traceroute...not found Checking for program /opt/ibm/csm/bin/traceroute...not found Checking for program /usr/local/bin/traceroute...not found Checking for program /usr/bin/traceroute...not found Checking for program /usr/local/sbin/traceroute...not found Checking for program /usr/sbin/traceroute...not found Checking for program /opt/ibm/flightlog/bin/traceroute...not found Checking for program /opt/ibutils/bin/traceroute...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/traceroute...not found Checking for program /opt/puppetlabs/bin/traceroute...not found Checking for program /usr/lpp/mmfs/bin/traceroute...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/traceroute...not found Unable to find programs ['traceroute'] providing listing of the specific search path Warning accessing /usr/sbin gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects ============================================================================================= ***** WARNING: mpiexec may not work on your system due to network issues. Perhaps you have VPN running whose network settings may not work with mpiexec or your network is misconfigured ============================================================================================= ============================================================================================= ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-EVLAuB/config.packages.MPI/conftest to see if it can be run Executing: jsrun -g1 -n 1 /tmp/petsc-EVLAuB/config.packages.MPI/conftest Running Executable with threads to time it out at 120 Executing: jsrun -g1 -n 1 /tmp/petsc-EVLAuB/config.packages.MPI/conftest ERROR while running executable: Could not execute "['jsrun -g1 -n 1 /tmp/petsc-EVLAuB/config.packages.MPI/conftest']": Error: It is only possible to use js commands within a job allocation unless CSM is running 06-07-2021 15:40:07:197 89390 main: Error initializing RM connection. Exiting. ============================================================================================= TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:432) Checking for MPI Datatype handles ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_LONG_DOUBLE" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_INT64_T" to "1" ============================================================================================= TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:478) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status Linker output before filtering: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status: SGI MPI test failure ============================================================================================= TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:488) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] ===== Checking linker Executing: mpiCC -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Executing: mpiCC -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:504) Make sure fortran include [mpif.h] and library symbols are found Checking for fortran mpi_init() Checking for functions [] in library [] [] ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.libraries -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.F90 Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Executing: mpifort -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lstdc++ -ldl Checking for mpi.mod Checking for functions [] in library [] [] ===== Checking linker Executing: mpifort -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.libraries -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.F90 Successful compile: Source: program main use mpi integer(kind=selected_int_kind(5)) ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Executing: mpifort -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_F90MODULE" to "1" ============================================================================================= TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:526) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPIIO" to "1" ============================================================================================= TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:630) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS Executing: mpicc -show stdout: gcc -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -pthread -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm compilers: Checking arg gcc compilers: Checking arg -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include compilers: Found include option: -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include Executing: nvcc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -g -Xcompiler -lineinfo -Xcompiler -fPIC -gencode arch=compute_70,code=sm_70 -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -Wno-deprecated-gpu-targets /tmp/petsc-EVLAuB/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -Xcompiler -lineinfo -Xcompiler -fPIC -gencode arch=compute_70,code=sm_70 -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include Added CUDA compiler flag -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include compilers: Checking arg -pthread compilers: Checking arg -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib compilers: Checking arg -lmpiprofilesupport compilers: Checking arg -lmpi_ibm Defined make macro "CUDA_CXXFLAGS" to " -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include " ============================================================================================= TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:679) Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.MPI/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ============================================================================================= TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:1033) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" ;petscpkgver(MPI_VERSION); Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.packages.cuda -I/tmp/petsc-EVLAuB/config.packages.MPI /tmp/petsc-EVLAuB/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:962) By default we don't care about checking if the library is shared child config.packages.MPI 11.649747 ============================================================================================= TESTING: consistencyChecks from config.packages.zstd(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.001788 ============================================================================================= TESTING: consistencyChecks from config.packages.yaml(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.001341 ============================================================================================= TESTING: consistencyChecks from config.packages.sycl(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sycl(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.sycl 0.001192 ============================================================================================= TESTING: consistencyChecks from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:31) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.001383 ============================================================================================= TESTING: consistencyChecks from config.packages.sprng(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.001329 PETSc clone, checking for Sowing Checking for program /sw/sources/lsf-tools/2.0/summit/bin/pdflatex...not found Checking for program /sw/summit/xalt/1.2.1/bin/pdflatex...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/pdflatex...not found Checking for program /sw/summit/forge/20.0.1/bin/pdflatex...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/pdflatex...not found Checking for program /sw/summit/gcc/6.4.0/bin/pdflatex...not found Checking for program /sw/summit/cuda/10.1.243/bin/pdflatex...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/pdflatex...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/pdflatex...not found Checking for program /sw/sources/hpss/bin/pdflatex...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/pdflatex...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/pdflatex...not found Checking for program /opt/ibm/csm/bin/pdflatex...not found Checking for program /usr/local/bin/pdflatex...not found Checking for program /usr/bin/pdflatex...found Defined make macro "PDFLATEX" to "/usr/bin/pdflatex" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/bfort...not found Checking for program /sw/summit/xalt/1.2.1/bin/bfort...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/bfort...not found Checking for program /sw/summit/forge/20.0.1/bin/bfort...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/bfort...not found Checking for program /sw/summit/gcc/6.4.0/bin/bfort...not found Checking for program /sw/summit/cuda/10.1.243/bin/bfort...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/bfort...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/bfort...not found Checking for program /sw/sources/hpss/bin/bfort...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/bfort...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/bfort...not found Checking for program /opt/ibm/csm/bin/bfort...not found Checking for program /usr/local/bin/bfort...not found Checking for program /usr/bin/bfort...not found Checking for program /usr/local/sbin/bfort...not found Checking for program /usr/sbin/bfort...not found Checking for program /opt/ibm/flightlog/bin/bfort...not found Checking for program /opt/ibutils/bin/bfort...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/bfort...not found Checking for program /opt/puppetlabs/bin/bfort...not found Checking for program /usr/lpp/mmfs/bin/bfort...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/bfort...not found Checking for program /sw/sources/lsf-tools/2.0/summit/bin/doctext...not found Checking for program /sw/summit/xalt/1.2.1/bin/doctext...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/doctext...not found Checking for program /sw/summit/forge/20.0.1/bin/doctext...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/doctext...not found Checking for program /sw/summit/gcc/6.4.0/bin/doctext...not found Checking for program /sw/summit/cuda/10.1.243/bin/doctext...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/doctext...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/doctext...not found Checking for program /sw/sources/hpss/bin/doctext...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/doctext...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/doctext...not found Checking for program /opt/ibm/csm/bin/doctext...not found Checking for program /usr/local/bin/doctext...not found Checking for program /usr/bin/doctext...not found Checking for program /usr/local/sbin/doctext...not found Checking for program /usr/sbin/doctext...not found Checking for program /opt/ibm/flightlog/bin/doctext...not found Checking for program /opt/ibutils/bin/doctext...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/doctext...not found Checking for program /opt/puppetlabs/bin/doctext...not found Checking for program /usr/lpp/mmfs/bin/doctext...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/doctext...not found Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mapnames...not found Checking for program /sw/summit/xalt/1.2.1/bin/mapnames...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/mapnames...not found Checking for program /sw/summit/forge/20.0.1/bin/mapnames...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mapnames...not found Checking for program /sw/summit/gcc/6.4.0/bin/mapnames...not found Checking for program /sw/summit/cuda/10.1.243/bin/mapnames...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/mapnames...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/mapnames...not found Checking for program /sw/sources/hpss/bin/mapnames...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/mapnames...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/mapnames...not found Checking for program /opt/ibm/csm/bin/mapnames...not found Checking for program /usr/local/bin/mapnames...not found Checking for program /usr/bin/mapnames...not found Checking for program /usr/local/sbin/mapnames...not found Checking for program /usr/sbin/mapnames...not found Checking for program /opt/ibm/flightlog/bin/mapnames...not found Checking for program /opt/ibutils/bin/mapnames...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/mapnames...not found Checking for program /opt/puppetlabs/bin/mapnames...not found Checking for program /usr/lpp/mmfs/bin/mapnames...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/mapnames...not found Checking for program /sw/sources/lsf-tools/2.0/summit/bin/bib2html...not found Checking for program /sw/summit/xalt/1.2.1/bin/bib2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/bib2html...not found Checking for program /sw/summit/forge/20.0.1/bin/bib2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/bib2html...not found Checking for program /sw/summit/gcc/6.4.0/bin/bib2html...not found Checking for program /sw/summit/cuda/10.1.243/bin/bib2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/bib2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/bib2html...not found Checking for program /sw/sources/hpss/bin/bib2html...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/bib2html...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/bib2html...not found Checking for program /opt/ibm/csm/bin/bib2html...not found Checking for program /usr/local/bin/bib2html...not found Checking for program /usr/bin/bib2html...not found Checking for program /usr/local/sbin/bib2html...not found Checking for program /usr/sbin/bib2html...not found Checking for program /opt/ibm/flightlog/bin/bib2html...not found Checking for program /opt/ibutils/bin/bib2html...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/bib2html...not found Checking for program /opt/puppetlabs/bin/bib2html...not found Checking for program /usr/lpp/mmfs/bin/bib2html...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/bib2html...not found Bfort not found. Installing sowing for FortranStubs ============================================================================================= TESTING: consistencyChecks from config.packages.sowing(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.sowing(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.sowing(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional sowing Looking for SOWING at git.sowing, hg.sowing or a directory starting with ['petsc-pkg-sowing'] Could not locate an existing copy of SOWING: [] Downloading sowing ============================================================================================= Trying to download git://https://bitbucket.org/petsc/pkg-sowing.git for SOWING ============================================================================================= install: Retrieving git://https://bitbucket.org/petsc/pkg-sowing.git as git repo Executing: git clone https://bitbucket.org/petsc/pkg-sowing.git /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing stdout: Cloning into '/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing'... Looking for SOWING at git.sowing, hg.sowing or a directory starting with ['petsc-pkg-sowing'] Found a copy of SOWING in git.sowing Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v1.1.26-p1^{commit}'] Executing: ['git', 'rev-parse', 'v1.1.26-p1'] stdout: 674d5f3c1bf3ce6e1d744818915a0d723ce4dbe0 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] Executing: ['git', 'checkout', '-f', '674d5f3c1bf3ce6e1d744818915a0d723ce4dbe0'] SOWING was just downloaded, forcing a rebuild because cannot determine if package has changed ============================================================================================= Running configure on SOWING; this may take several minutes ============================================================================================= Executing: ./configure --prefix=/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda stdout: checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... /usr/bin/latex checking for gs... /usr/bin/gs checking for pnmcrop... no checking for pbmtoxbm... no checking for ppmtogif... no checking for pnmquant... no checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for egrep... /usr/bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/sys/testing/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/bfort/Makefile config.status: creating docs/doctext/Makefile config.status: creating docs/install/Makefile config.status: creating docs/tohtml/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating src/bfort/testing2/Makefile config.status: creating include/sowingconfig.h config.status: executing bib2html commands ============================================================================================= Running make on SOWING; this may take several minutes ============================================================================================= Executing: /usr/bin/gmake clean stdout: for dir in src docs ; do ( cd $dir && /usr/bin/gmake clean ) ; done gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src' for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /usr/bin/gmake clean ) ; done gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/sys' rm -f *.o *~ gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/sys' gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bfort' rm -f *.o *~ bfort-old bfort rm -f bfort\ win32/debug/* rm -f *.gcda *.gcno *.gcov (cd testing && /usr/bin/gmake clean ) gmake[3]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bfort/testing' rm -f n1f.c n2f.c tstpgmaf.c tstpgma2f.c tstpgmbf.c tstcf.c tst2cf.c tst3cf.c tstpgmaf90.f90 tstpgmbf90.f90 config.log gmake[3]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bfort/testing' (cd testing2 && /usr/bin/gmake clean ) gmake[3]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bfort/testing2' rm -f tbasef.c tbasef2.c tbasef3.c tbasef4.c tcharf.c tcharf2.c tmpif.c tretf.c tpetscf.c thandlef.c theadhf.c tmp/tbasef.c tmp/tbasef2.c tpetsc.f90 thandle.f90 malformf.c tbaserm.c rm -rf tmp gmake[3]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bfort/testing2' gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bfort' gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/tohtml' /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && /usr/bin/gmake clean ) gmake[3]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/tohtml/testing' rm -rf test[1-9] test1[0-9] test2[0-9] rm -f test[1-9].html rm -f latex.err *.hux img*.xbm img*.gif rm -f up.gif previous.gif next.gif rm -f test1[0-9].html test2[0-9].html test7a.html rm -f test[0-9].htm test[1-2][0-9].htm rm -f testf1.ps testf1.gif rm -f inplace subfiles rm -f *.ler *.aux *.out gmake[3]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/tohtml/testing' gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/tohtml' gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/doctext' /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then /usr/bin/gmake clean ; fi ) gmake[3]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/doctext/test' rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit gmake[3]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/doctext/test' /bin/rm -f doctext\ win32/debug/* gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/doctext' gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/textfilt' /bin/rm -f *.o *~ gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/textfilt' gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/mapnames' /bin/rm -f *.o *~ mapnames ccc test1.html test1.tex test1nc.tex test1nc.html test1.pmap gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/mapnames' gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bib2html' rm -f tout.htm tout-bib.htm gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bib2html' gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src' gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs' make[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs/bfort' rm -f bfort.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs/bfort' make[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs/doctext' rm -f doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs/doctext' make[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs/install' rm -f install.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs/install' make[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs/tohtml' rm -f tohtml.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs/tohtml' gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs' /bin/rm -f lib/libsowing.a lib/libtfilter.a Executing: /usr/bin/gmake stdout: (cd src/sys && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/sys' gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c gcc -I../../include -I../../include -c rdconfig.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o ranlib ../../lib/libsowing.a gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/sys' (cd src/tohtml && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/tohtml' gcc -I../../include -I. -I../../include -c tohtml.c gcc -I../../include -I. -I../../include -c tex2html.c gcc -I../../include -I. -I../../include -c search.c gcc -I../../include -I. -I../../include -c texactio.c gcc -I../../include -I. -I../../include -c rdaux.c gcc -I../../include -I. -I../../include -c rdindx.c gcc -I../../include -I. -I../../include -c label.c gcc -I../../include -I. -I../../include -c scan.c gcc -I../../include -I. -I../../include -c refmap.c gcc -I../../include -I. -I../../include -c style.c gcc -I../../include -I. -I../../include -c dimen.c gcc -I../../include -I. -I../../include -c userdef.c gcc -I../../include -I. -I../../include -c tabular.c gcc -I../../include -I. -I../../include -c biblio.c gcc -I../../include -I. -I../../include -c environ.c gcc -I../../include -I. -I../../include -c math.c gcc -I../../include -I. -I../../include -c rddefs.c gcc -I../../include -I. -I../../include -c latexinfo.c gcc -I../../include -I. -I../../include -c accent.c gcc -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/tohtml' (cd src/bfort && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bfort' gcc -DBASEDEF='"/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/bfort-base.txt"' -DBASEPATH='"/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/bfort-base.txt"' -DBASEPATH='"/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bfort' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/textfilt' c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/textfilt' (cd src/doctext && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/doctext' c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/doctext' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/textfilt' gmake[1]: Nothing to be done for `ALL'. gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/textfilt' (cd src/mapnames && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/mapnames' c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/mapnames' ============================================================================================= Running make install on SOWING; this may take several minutes ============================================================================================= Executing: /usr/bin/gmake install stdout: /usr/bin/install -c bin/bib2html /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/bib2html /usr/bin/install -c src/doctext/doctext /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/doctext /usr/bin/install -c src/doctext/doc2lt /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/tohtml if [ "`cd bin && pwd`" != "`cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/bfort /usr/bin/install -c src/mapnames/mapnames /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/mapnames INSTALL_DATA ./share/pstoppm.ps /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/pstoppm.ps INSTALL_DATA ./share/basedefs.txt /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/basedefs.txt INSTALL_DATA ./share/blueball.gif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/blueball.gif INSTALL_DATA ./share/greenball.gif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/greenball.gif INSTALL_DATA ./share/purpleball.gif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/purpleball.gif INSTALL_DATA ./share/redball.gif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/redball.gif INSTALL_DATA ./share/yellowball.gif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/yellowball.gif INSTALL_DATA ./share/next.gif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/next.gif INSTALL_DATA ./share/up.gif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/up.gif INSTALL_DATA ./share/previous.gif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/previous.gif INSTALL_DATA ./share/html.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/html.def INSTALL_DATA ./share/latex.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/latex.def INSTALL_DATA ./share/nroff.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/nroff.def INSTALL_DATA ./share/refman.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/refman.def INSTALL_DATA ./share/refman.sty /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/refman.sty INSTALL_DATA ./share/next.xbm /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/next.xbm INSTALL_DATA ./share/up.xbm /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/up.xbm INSTALL_DATA ./share/previous.xbm /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/previous.xbm INSTALL_DATA ./share/doctext/html.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/doctext/html.def INSTALL_DATA ./share/doctext/htmlcolor.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/doctext/htmlcolor.def INSTALL_DATA ./share/doctext/htmltabl.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/doctext/htmltabl.def INSTALL_DATA ./share/doctext/htmlargtbl.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/doctext/htmlargtbl.def INSTALL_DATA ./share/doctext/latex.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/doctext/latex.def INSTALL_DATA ./share/doctext/latexargtbl.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/doctext/latexargtbl.def INSTALL_DATA ./share/doctext/nroff.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/doctext/nroff.def INSTALL_DATA ./share/bfort-base.txt /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/bfort-base.txt INSTALL_DATA ./share/bfort-mpi.txt /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/bfort-mpi.txt INSTALL_DATA ./share/bfort-petsc.txt /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/bfort-petsc.txt INSTALL_DATA ./man/man1/tohtml.1 /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/man/man1/tohtml.1 INSTALL_DATA ./man/man1/doctext.1 /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/man/man1/doctext.1 INSTALL_DATA ./man/man1/bfort.1 /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/man/man1/bfort.1 ********Output of running make on SOWING follows ******* checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... /usr/bin/latex checking for gs... /usr/bin/gs checking for pnmcrop... no checking for pbmtoxbm... no checking for ppmtogif... no checking for pnmquant... no checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for egrep... /usr/bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/sys/testing/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/bfort/Makefile config.status: creating docs/doctext/Makefile config.status: creating docs/install/Makefile config.status: creating docs/tohtml/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating src/bfort/testing2/Makefile config.status: creating include/sowingconfig.h config.status: executing bib2html commandsfor dir in src docs ; do ( cd $dir && /usr/bin/gmake clean ) ; done gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src' for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /usr/bin/gmake clean ) ; done gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/sys' rm -f *.o *~ gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/sys' gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bfort' rm -f *.o *~ bfort-old bfort rm -f bfort\ win32/debug/* rm -f *.gcda *.gcno *.gcov (cd testing && /usr/bin/gmake clean ) gmake[3]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bfort/testing' rm -f n1f.c n2f.c tstpgmaf.c tstpgma2f.c tstpgmbf.c tstcf.c tst2cf.c tst3cf.c tstpgmaf90.f90 tstpgmbf90.f90 config.log gmake[3]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bfort/testing' (cd testing2 && /usr/bin/gmake clean ) gmake[3]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bfort/testing2' rm -f tbasef.c tbasef2.c tbasef3.c tbasef4.c tcharf.c tcharf2.c tmpif.c tretf.c tpetscf.c thandlef.c theadhf.c tmp/tbasef.c tmp/tbasef2.c tpetsc.f90 thandle.f90 malformf.c tbaserm.c rm -rf tmp gmake[3]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bfort/testing2' gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bfort' gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/tohtml' /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && /usr/bin/gmake clean ) gmake[3]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/tohtml/testing' rm -rf test[1-9] test1[0-9] test2[0-9] rm -f test[1-9].html rm -f latex.err *.hux img*.xbm img*.gif rm -f up.gif previous.gif next.gif rm -f test1[0-9].html test2[0-9].html test7a.html rm -f test[0-9].htm test[1-2][0-9].htm rm -f testf1.ps testf1.gif rm -f inplace subfiles rm -f *.ler *.aux *.out gmake[3]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/tohtml/testing' gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/tohtml' gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/doctext' /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then /usr/bin/gmake clean ; fi ) gmake[3]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/doctext/test' rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit gmake[3]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/doctext/test' /bin/rm -f doctext\ win32/debug/* gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/doctext' gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/textfilt' /bin/rm -f *.o *~ gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/textfilt' gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/mapnames' /bin/rm -f *.o *~ mapnames ccc test1.html test1.tex test1nc.tex test1nc.html test1.pmap gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/mapnames' gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bib2html' rm -f tout.htm tout-bib.htm gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bib2html' gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src' gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs' make[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs/bfort' rm -f bfort.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs/bfort' make[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs/doctext' rm -f doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs/doctext' make[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs/install' rm -f install.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs/install' make[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs/tohtml' rm -f tohtml.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs/tohtml' gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/docs' /bin/rm -f lib/libsowing.a lib/libtfilter.a(cd src/sys && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/sys' gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c gcc -I../../include -I../../include -c rdconfig.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o ranlib ../../lib/libsowing.a gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/sys' (cd src/tohtml && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/tohtml' gcc -I../../include -I. -I../../include -c tohtml.c gcc -I../../include -I. -I../../include -c tex2html.c gcc -I../../include -I. -I../../include -c search.c gcc -I../../include -I. -I../../include -c texactio.c gcc -I../../include -I. -I../../include -c rdaux.c gcc -I../../include -I. -I../../include -c rdindx.c gcc -I../../include -I. -I../../include -c label.c gcc -I../../include -I. -I../../include -c scan.c gcc -I../../include -I. -I../../include -c refmap.c gcc -I../../include -I. -I../../include -c style.c gcc -I../../include -I. -I../../include -c dimen.c gcc -I../../include -I. -I../../include -c userdef.c gcc -I../../include -I. -I../../include -c tabular.c gcc -I../../include -I. -I../../include -c biblio.c gcc -I../../include -I. -I../../include -c environ.c gcc -I../../include -I. -I../../include -c math.c gcc -I../../include -I. -I../../include -c rddefs.c gcc -I../../include -I. -I../../include -c latexinfo.c gcc -I../../include -I. -I../../include -c accent.c gcc -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/tohtml' (cd src/bfort && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bfort' gcc -DBASEDEF='"/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/bfort-base.txt"' -DBASEPATH='"/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/bfort-base.txt"' -DBASEPATH='"/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/bfort' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/textfilt' c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/textfilt' (cd src/doctext && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/doctext' c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/doctext' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/textfilt' gmake[1]: Nothing to be done for `ALL'. gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/textfilt' (cd src/mapnames && /usr/bin/gmake ) gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/mapnames' c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing/src/mapnames'../../lib/libsowing.a(file.o): In function `SYOpenWritableFile': file.c:(.text+0xf84): warning: the use of `mktemp' is dangerous, better use `mkstemp' ../../lib/libsowing.a(file.o): In function `SYOpenWritableFile': file.c:(.text+0xf84): warning: the use of `mktemp' is dangerous, better use `mkstemp' /usr/bin/install -c bin/bib2html /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/bib2html /usr/bin/install -c src/doctext/doctext /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/doctext /usr/bin/install -c src/doctext/doc2lt /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/tohtml if [ "`cd bin && pwd`" != "`cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/bfort /usr/bin/install -c src/mapnames/mapnames /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/mapnames INSTALL_DATA ./share/pstoppm.ps /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/pstoppm.ps INSTALL_DATA ./share/basedefs.txt /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/basedefs.txt INSTALL_DATA ./share/blueball.gif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/blueball.gif INSTALL_DATA ./share/greenball.gif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/greenball.gif INSTALL_DATA ./share/purpleball.gif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/purpleball.gif INSTALL_DATA ./share/redball.gif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/redball.gif INSTALL_DATA ./share/yellowball.gif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/yellowball.gif INSTALL_DATA ./share/next.gif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/next.gif INSTALL_DATA ./share/up.gif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/up.gif INSTALL_DATA ./share/previous.gif /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/previous.gif INSTALL_DATA ./share/html.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/html.def INSTALL_DATA ./share/latex.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/latex.def INSTALL_DATA ./share/nroff.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/nroff.def INSTALL_DATA ./share/refman.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/refman.def INSTALL_DATA ./share/refman.sty /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/refman.sty INSTALL_DATA ./share/next.xbm /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/next.xbm INSTALL_DATA ./share/up.xbm /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/up.xbm INSTALL_DATA ./share/previous.xbm /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/previous.xbm INSTALL_DATA ./share/doctext/html.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/doctext/html.def INSTALL_DATA ./share/doctext/htmlcolor.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/doctext/htmlcolor.def INSTALL_DATA ./share/doctext/htmltabl.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/doctext/htmltabl.def INSTALL_DATA ./share/doctext/htmlargtbl.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/doctext/htmlargtbl.def INSTALL_DATA ./share/doctext/latex.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/doctext/latex.def INSTALL_DATA ./share/doctext/latexargtbl.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/doctext/latexargtbl.def INSTALL_DATA ./share/doctext/nroff.def /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/doctext/nroff.def INSTALL_DATA ./share/bfort-base.txt /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/bfort-base.txt INSTALL_DATA ./share/bfort-mpi.txt /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/bfort-mpi.txt INSTALL_DATA ./share/bfort-petsc.txt /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/bfort-petsc.txt INSTALL_DATA ./man/man1/tohtml.1 /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/man/man1/tohtml.1 INSTALL_DATA ./man/man1/doctext.1 /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/man/man1/doctext.1 INSTALL_DATA ./man/man1/bfort.1 /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/share/man/man1/bfort.1********End of Output of running make on SOWING ******* Not checking for library in Download SOWING: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Download SOWING: ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Found header files [] in ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking for headers [] in Download SOWING: ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkVersion from config.packages.sowing(config/BuildSystem/config/package.py:1033) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version For sowing unable to find version information since includes and version includes are missing skipping version check ============================================================================================= TESTING: checkSharedLibrary from config.packages.sowing(config/BuildSystem/config/package.py:962) By default we don't care about checking if the library is shared Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/bfort...found Defined make macro "BFORT" to "/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/bfort" Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/doctext...found Defined make macro "DOCTEXT" to "/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/doctext" Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/mapnames...found Defined make macro "MAPNAMES" to "/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/mapnames" Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/bib2html...found Defined make macro "BIB2HTML" to "/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/bib2html" Executing: /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/bfort -version stdout: bfort (sowing) release 1.1.26 of Date unknown Running /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/bfort to generate fortran stubs child config.packages.sowing 28.113092 ============================================================================================= TESTING: consistencyChecks from config.packages.revolve(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.030637 ============================================================================================= TESTING: consistencyChecks from config.packages.radau5(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.001506 ============================================================================================= TESTING: consistencyChecks from config.packages.pami(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.001202 ============================================================================================= TESTING: consistencyChecks from config.packages.opengles(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.001188 ============================================================================================= TESTING: consistencyChecks from config.packages.opencl(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.001391 ============================================================================================= TESTING: consistencyChecks from config.packages.muparser(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.001502 ============================================================================================= TESTING: consistencyChecks from config.packages.mpe(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.001346 ============================================================================================= TESTING: consistencyChecks from config.packages.memkind(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.001655 ============================================================================================= TESTING: consistencyChecks from config.packages.libmesh(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:76) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.001634 ============================================================================================= TESTING: consistencyChecks from config.packages.moose(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.001230 ============================================================================================= TESTING: consistencyChecks from config.packages.libjpeg(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.001505 Checking for program /sw/sources/lsf-tools/2.0/summit/bin/lgrind...not found Checking for program /sw/summit/xalt/1.2.1/bin/lgrind...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/lgrind...not found Checking for program /sw/summit/forge/20.0.1/bin/lgrind...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/lgrind...not found Checking for program /sw/summit/gcc/6.4.0/bin/lgrind...not found Checking for program /sw/summit/cuda/10.1.243/bin/lgrind...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/lgrind...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/lgrind...not found Checking for program /sw/sources/hpss/bin/lgrind...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/lgrind...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/lgrind...not found Checking for program /opt/ibm/csm/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /usr/local/sbin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /opt/ibm/flightlog/bin/lgrind...not found Checking for program /opt/ibutils/bin/lgrind...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/lgrind...not found Checking for program /opt/puppetlabs/bin/lgrind...not found Checking for program /usr/lpp/mmfs/bin/lgrind...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/lgrind...not found child config.packages.lgrind 0.001448 ============================================================================================= TESTING: consistencyChecks from config.packages.hip(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hip(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.hip 0.001199 child config.packages.gmsh 0.000176 ============================================================================================= TESTING: consistencyChecks from config.packages.gmp(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.001332 ============================================================================================= TESTING: consistencyChecks from config.packages.mpfr(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.001489 ============================================================================================= TESTING: consistencyChecks from config.packages.giflib(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.001330 ============================================================================================= TESTING: consistencyChecks from config.packages.cub(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cub(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.cub 0.001637 ============================================================================================= TESTING: consistencyChecks from config.packages.ctetgen(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.ctetgen 0.001326 ============================================================================================= TESTING: consistencyChecks from config.packages.concurrencykit(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.001334 ============================================================================================= TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:30) Looking for default C2html executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/c2html...not found Checking for program /sw/summit/xalt/1.2.1/bin/c2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/c2html...not found Checking for program /sw/summit/forge/20.0.1/bin/c2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/c2html...not found Checking for program /sw/summit/gcc/6.4.0/bin/c2html...not found Checking for program /sw/summit/cuda/10.1.243/bin/c2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/c2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/c2html...not found Checking for program /sw/sources/hpss/bin/c2html...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/c2html...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/c2html...not found Checking for program /opt/ibm/csm/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /usr/local/sbin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /opt/ibm/flightlog/bin/c2html...not found Checking for program /opt/ibutils/bin/c2html...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/c2html...not found Checking for program /opt/puppetlabs/bin/c2html...not found Checking for program /usr/lpp/mmfs/bin/c2html...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/c2html...not found child config.packages.c2html 0.002019 ============================================================================================= TESTING: consistencyChecks from config.packages.boost(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.001505 ============================================================================================= TESTING: consistencyChecks from config.packages.silo(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.001335 ============================================================================================= TESTING: consistencyChecks from config.packages.Random123(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.001473 ============================================================================================= TESTING: consistencyChecks from config.packages.PARTY(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.001338 ============================================================================================= TESTING: consistencyChecks from config.packages.NVSHMEM(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.NVSHMEM(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.NVSHMEM 0.001192 ============================================================================================= TESTING: consistencyChecks from config.packages.Matlab(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.001287 ============================================================================================= TESTING: consistencyChecks from config.packages.MatlabEngine(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.001369 ============================================================================================= TESTING: consistencyChecks from config.packages.Mathematica(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.001178 ============================================================================================= TESTING: consistencyChecks from config.packages.regex(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Compiler specific search REGEX: ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Found header files [] in ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking for headers ['regex.h'] in Compiler specific search REGEX: ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking include with compiler flags var CPPFLAGS ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.packages.cuda -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.packages.MPI -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['regex.h'] in ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:1033) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:962) By default we don't care about checking if the library is shared child config.packages.regex 0.456161 ============================================================================================= TESTING: consistencyChecks from config.packages.libceed(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.001576 Defined "PYTHON_EXE" to ""/usr/bin/python"" Executing: /usr/bin/python -c "import Cython" Executing: /usr/bin/python -c "import numpy" child config.packages.python 0.031852 ============================================================================================= TESTING: consistencyChecks from config.packages.petsc4py(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:131) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] Defined make rule "petsc4pytest" with dependencies "" and code [] child config.packages.petsc4py 0.001942 ============================================================================================= TESTING: consistencyChecks from config.packages.mpi4py(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:79) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] child config.packages.mpi4py 0.001739 ============================================================================================= TESTING: consistencyChecks from config.packages.slepc(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:97) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.001637 ============================================================================================= TESTING: consistencyChecks from config.packages.opengl(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.001584 ============================================================================================= TESTING: consistencyChecks from config.packages.glut(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.001194 ============================================================================================= TESTING: consistencyChecks from config.packages.GLVis(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.GLVis(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.GLVis 0.001333 ============================================================================================= TESTING: consistencyChecks from config.packages.CoDiPack(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.001529 ============================================================================================= TESTING: consistencyChecks from config.packages.adblaslapack(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.001323 child config.packages.cxxlibs 0.000011 ============================================================================================= TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:51) Looking for default CMake executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/cmake...not found Checking for program /sw/summit/xalt/1.2.1/bin/cmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/cmake...not found Checking for program /sw/summit/forge/20.0.1/bin/cmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/cmake...not found Checking for program /sw/summit/gcc/6.4.0/bin/cmake...not found Checking for program /sw/summit/cuda/10.1.243/bin/cmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake...found Defined make macro "CMAKE" to "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake" Looking for default CTest executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ctest...not found Checking for program /sw/summit/xalt/1.2.1/bin/ctest...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/bin/ctest...not found Checking for program /sw/summit/forge/20.0.1/bin/ctest...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ctest...not found Checking for program /sw/summit/gcc/6.4.0/bin/ctest...not found Checking for program /sw/summit/cuda/10.1.243/bin/ctest...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/ctest...found Defined make macro "CTEST" to "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/ctest" Executing: /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake --version stdout: cmake version 3.20.2 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.20.2 child config.packages.cmake 0.015015 ============================================================================================= TESTING: consistencyChecks from config.packages.unittestcpp(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.001835 ============================================================================================= TESTING: consistencyChecks from config.packages.googletest(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.001344 ============================================================================================= TESTING: consistencyChecks from config.packages.eigen(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.001339 ============================================================================================= TESTING: consistencyChecks from config.packages.szlib(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.002466 ============================================================================================= TESTING: consistencyChecks from config.packages.zlib(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.zlib 0.001835 child config.packages.mathlib 0.000015 ============================================================================================= TESTING: consistencyChecks from config.packages.tetgen(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.tetgen 0.001517 ============================================================================================= TESTING: consistencyChecks from config.packages.tchem(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.001333 ============================================================================================= TESTING: consistencyChecks from config.packages.saws(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.001325 ============================================================================================= TESTING: consistencyChecks from config.packages.libpng(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.001522 ============================================================================================= TESTING: consistencyChecks from config.packages.combblas(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.001516 ============================================================================================= TESTING: consistencyChecks from config.packages.Triangle(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.Triangle 0.001486 ============================================================================================= TESTING: consistencyChecks from config.packages.metis(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.metis(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.metis(config/BuildSystem/config/packages/metis.py:46) ================================================================================== Checking for a functional metis Looking for METIS at git.metis, hg.metis or a directory starting with ['petsc-pkg-metis'] Could not locate an existing copy of METIS: ['git.sowing'] Downloading metis ============================================================================================= Trying to download git://https://bitbucket.org/petsc/pkg-metis.git for METIS ============================================================================================= install: Retrieving git://https://bitbucket.org/petsc/pkg-metis.git as git repo Executing: git clone https://bitbucket.org/petsc/pkg-metis.git /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis stdout: Cloning into '/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis'... Looking for METIS at git.metis, hg.metis or a directory starting with ['petsc-pkg-metis'] Found a copy of METIS in git.metis Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v5.1.0-p10^{commit}'] Executing: ['git', 'rev-parse', 'v5.1.0-p10'] stdout: c8d2dc1e751ef7ebe5e221156d7572d7cea26990 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] Executing: ['git', 'checkout', '-f', 'c8d2dc1e751ef7ebe5e221156d7572d7cea26990'] Executing: mpifort -V Executing: mpifort --version stdout: GNU Fortran (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: mpifort -V Executing: mpifort --version stdout: GNU Fortran (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: mpifort -V Executing: mpifort --version stdout: GNU Fortran (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. METIS was just downloaded, forcing a rebuild because cannot determine if package has changed ============================================================================================= Configuring METIS with cmake; this may take several minutes ============================================================================================= Executing: /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda -DCMAKE_INSTALL_NAME_DIR:STRING="/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib" -DCMAKE_INSTALL_LIBDIR:STRING="lib" -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_BUILD_TYPE=Debug -DCMAKE_C_COMPILER="mpicc" -DMPI_C_COMPILER="mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0" -DCMAKE_C_FLAGS_DEBUG:STRING="-fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0" -DCMAKE_C_FLAGS_RELEASE:STRING="-fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0" -DCMAKE_CXX_COMPILER="mpiCC" -DMPI_CXX_COMPILER="mpiCC" -DCMAKE_CXX_FLAGS:STRING="-fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0 -std=gnu++14 -fPIC -std=gnu++14" -DCMAKE_CXX_FLAGS_DEBUG:STRING="-fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0 -std=gnu++14 -fPIC -std=gnu++14" -DCMAKE_CXX_FLAGS_RELEASE:STRING="-fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0 -std=gnu++14 -fPIC -std=gnu++14" -DCMAKE_Fortran_COMPILER="mpifort" -DMPI_Fortran_COMPILER="mpifort" -DCMAKE_Fortran_FLAGS:STRING="-fPIC -ffree-line-length-0 -g -O0" -DCMAKE_Fortran_FLAGS_DEBUG:STRING="-fPIC -ffree-line-length-0 -g -O0" -DCMAKE_Fortran_FLAGS_RELEASE:STRING="-fPIC -ffree-line-length-0 -g -O0" -DBUILD_SHARED_LIBS:BOOL=ON -DGKLIB_PATH=../GKlib -DGKRAND=1 -DSHARED=1 -DDEBUG=1 -DMATH_LIB="-lm" stdout: -- The C compiler identification is GNU 6.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Looking for execinfo.h -- Looking for execinfo.h - found -- Looking for getline -- Looking for getline - found -- Performing Test HAVE__thread -- Performing Test HAVE__thread - Success -- checking for __thread thread-local storage - found -- Configuring done -- Generating done -- Build files have been written to: /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build ============================================================================================= Compiling and installing METIS; this may take several minutes ============================================================================================= Executing: /usr/bin/gmake -j59 -l166.4 stdout: /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake -S/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis -B/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake -E cmake_progress_start /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build/CMakeFiles /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/depend gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build' cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build && /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake -E cmake_depends "Unix Makefiles" /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/libmetis /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build/libmetis /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build' [ 1%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/getopt.c.o [ 4%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/mcore.c.o [ 4%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/error.c.o [ 6%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/pdb.c.o cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build/libmetis && /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc -Dmetis_EXPORTS -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/GKlib -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/libmetis/. -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build/include -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DDEBUG -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/error.c.o -MF CMakeFiles/metis.dir/__/GKlib/error.c.o.d -o CMakeFiles/metis.dir/__/GKlib/error.c.o -c /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/GKlib/error.c cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build/libmetis && /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc -Dmetis_EXPORTS -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/GKlib -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/libmetis/. -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build/include -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DDEBUG -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs 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-Dmetis_EXPORTS -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/GKlib -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/libmetis/. -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build/include -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DDEBUG -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs 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-I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/petsc-build/include -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DDEBUG -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/srefine.c.o -MF CMakeFiles/metis.dir/srefine.c.o.d -o CMakeFiles/metis.dir/srefine.c.o -c /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/libmetis/srefine.c [ 96%] 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'-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/GKlib/csr.c: In function 'gk_csr_Normalize': /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/GKlib/csr.c:1344:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (norm == 1) ^~ /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis/GKlib/csr.c:1346:11: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' for (j=ptr[i]; j Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.packages.cuda -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.packages.MPI -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['metis.h'] in ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.metis/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include /tmp/petsc-EVLAuB/config.packages.metis/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.packages.metis/conftest.c: In function 'main': /tmp/petsc-EVLAuB/config.packages.metis/conftest.c:8:7: warning: extra tokens at end of #endif directive [-Wendif-labels] #endif; ^ Source: #include "confdefs.h" #include "conffix.h" #include "metis.h" int main() { #if (IDXTYPEWIDTH != 32) #error incompatible IDXTYPEWIDTH #endif; return 0; } ============================================================================================= TESTING: checkVersion from config.packages.metis(config/BuildSystem/config/package.py:1033) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "metis.h" ;petscpkgver(METIS_VER_MAJOR.METIS_VER_MINOR.METIS_VER_SUBMINOR); Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.packages.cuda -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include /tmp/petsc-EVLAuB/config.packages.metis/conftest.c For metis need <= 5.1.0 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.metis(config/BuildSystem/config/package.py:962) By default we don't care about checking if the library is shared child config.packages.metis 5.781007 ============================================================================================= TESTING: consistencyChecks from config.packages.pragmatic(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic 0.001786 ============================================================================================= TESTING: consistencyChecks from config.packages.parmetis(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.parmetis(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.parmetis(config/BuildSystem/config/packages/parmetis.py:41) ================================================================================== Checking for a functional parmetis Looking for PARMETIS at git.parmetis, hg.parmetis or a directory starting with ['petsc-pkg-parmetis'] Could not locate an existing copy of PARMETIS: ['git.sowing', 'git.metis'] Downloading parmetis ============================================================================================= Trying to download git://https://bitbucket.org/petsc/pkg-parmetis.git for PARMETIS ============================================================================================= install: Retrieving git://https://bitbucket.org/petsc/pkg-parmetis.git as git repo Executing: git clone https://bitbucket.org/petsc/pkg-parmetis.git /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis stdout: Cloning into '/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis'... Looking for PARMETIS at git.parmetis, hg.parmetis or a directory starting with ['petsc-pkg-parmetis'] Found a copy of PARMETIS in git.parmetis Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v4.0.3-p6^{commit}'] Executing: ['git', 'rev-parse', 'v4.0.3-p6'] stdout: 475d8facbb324527c205f1f78a7c90bd160bddcd Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] Executing: ['git', 'checkout', '-f', '475d8facbb324527c205f1f78a7c90bd160bddcd'] Executing: mpifort -V Executing: mpifort --version stdout: GNU Fortran (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: mpifort -V Executing: mpifort --version stdout: GNU Fortran (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: mpifort -V Executing: mpifort --version stdout: GNU Fortran (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. PARMETIS was just downloaded, forcing a rebuild because cannot determine if package has changed ============================================================================================= Configuring PARMETIS with cmake; this may take several minutes ============================================================================================= Executing: /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda -DCMAKE_INSTALL_NAME_DIR:STRING="/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib" -DCMAKE_INSTALL_LIBDIR:STRING="lib" -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_BUILD_TYPE=Debug -DCMAKE_C_COMPILER="mpicc" -DMPI_C_COMPILER="mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0" -DCMAKE_C_FLAGS_DEBUG:STRING="-fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0" -DCMAKE_C_FLAGS_RELEASE:STRING="-fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0" -DCMAKE_CXX_COMPILER="mpiCC" -DMPI_CXX_COMPILER="mpiCC" -DCMAKE_CXX_FLAGS:STRING="-fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0 -std=gnu++14 -fPIC -std=gnu++14" -DCMAKE_CXX_FLAGS_DEBUG:STRING="-fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0 -std=gnu++14 -fPIC -std=gnu++14" -DCMAKE_CXX_FLAGS_RELEASE:STRING="-fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0 -std=gnu++14 -fPIC -std=gnu++14" -DCMAKE_Fortran_COMPILER="mpifort" -DMPI_Fortran_COMPILER="mpifort" -DCMAKE_Fortran_FLAGS:STRING="-fPIC -ffree-line-length-0 -g -O0" -DCMAKE_Fortran_FLAGS_DEBUG:STRING="-fPIC -ffree-line-length-0 -g -O0" -DCMAKE_Fortran_FLAGS_RELEASE:STRING="-fPIC -ffree-line-length-0 -g -O0" -DBUILD_SHARED_LIBS:BOOL=ON -DGKLIB_PATH=../headers -DMETIS_PATH=/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda -DSHARED=1 -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON -DDEBUG=1 stdout: -- The C compiler identification is GNU 6.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Configuring done -- Generating done -- Build files have been written to: /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build ============================================================================================= Compiling and installing PARMETIS; this may take several minutes ============================================================================================= Executing: /usr/bin/gmake -j59 -l166.4 stdout: /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake -S/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis -B/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake -E cmake_progress_start /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build/CMakeFiles /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory 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"Debug" -- Installing: /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include/parmetis.h -- Installing: /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib/libparmetis.so -- Set runtime path of "/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib/libparmetis.so" to "/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib" ********Output of running make on PARMETIS follows ******* -- The C compiler identification is GNU 6.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Configuring done -- Generating done -- Build files have been written to: 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-I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/libparmetis/. -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0 -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -O0 -fPIC -MD -MT libparmetis/CMakeFiles/parmetis.dir/serial.c.o -MF CMakeFiles/parmetis.dir/serial.c.o.d -o CMakeFiles/parmetis.dir/serial.c.o -c /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/libparmetis/serial.c [ 92%] Building C object libparmetis/CMakeFiles/parmetis.dir/stat.c.o cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build/libparmetis && 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'-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake -S/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis -B/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake -E cmake_progress_start /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build/CMakeFiles /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build' /usr/bin/gmake -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/depend gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build' cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build && /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake -E cmake_depends "Unix Makefiles" /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/libparmetis /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build/libparmetis /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build/libparmetis/CMakeFiles/parmetis.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target parmetis gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build' /usr/bin/gmake -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/build gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build' gmake[2]: Nothing to be done for `libparmetis/CMakeFiles/parmetis.dir/build'. gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build' [100%] Built target parmetis gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build' /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake -E cmake_progress_start /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build/CMakeFiles 0 /usr/bin/gmake -f CMakeFiles/Makefile2 preinstall gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build' gmake[1]: Nothing to be done for `preinstall'. gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis/petsc-build' Install the project... /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake -P cmake_install.cmake -- Install configuration: "Debug" -- Installing: /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include/parmetis.h -- Installing: /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib/libparmetis.so -- Set runtime path of "/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib/libparmetis.so" to "/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib"********End of Output of running make on PARMETIS ******* Checking for library in Download PARMETIS: ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib/libparmetis.a'] Contents of /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda: ['include', 'bin', 'externalpackages', 'lib', 'share'] Contents /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib: ['libmetis.so', 'libparmetis.so', 'petsc'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ParMETIS_V3_PartKway] in library ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib/libparmetis.a'] ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib/libmetis.a', 'libm.a'] Checking directory of requested libraries:/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib for first library:libparmetis. Files in directory:['libmetis.so', 'libparmetis.so', 'petsc'] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_V3_PartKway(); static void _check_ParMETIS_V3_PartKway() { ParMETIS_V3_PartKway(); } int main() { _check_ParMETIS_V3_PartKway();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -lparmetis -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -lmetis -lm -lstdc++ -ldl Defined "HAVE_LIBPARMETIS" to "1" Checking for optional headers [] in Download PARMETIS: ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Found header files [] in ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking for headers ['parmetis.h'] in Download PARMETIS: ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['parmetis.h'] in ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking include with compiler flags var CPPFLAGS ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.packages.cuda -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.headers -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['parmetis.h'] in ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking for functions [ParMETIS_ComputeVertexSeparator] in library ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib/libparmetis.a'] ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib/libmetis.a', 'libm.a'] Checking directory of requested libraries:/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib for first library:libparmetis. Files in directory:['libmetis.so', 'libparmetis.so', 'petsc'] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_ComputeVertexSeparator(); static void _check_ParMETIS_ComputeVertexSeparator() { ParMETIS_ComputeVertexSeparator(); } int main() { _check_ParMETIS_ComputeVertexSeparator();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -lparmetis -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -lmetis -lm -lstdc++ -ldl Defined "HAVE_LIBPARMETIS" to "1" ============================================================================================= TESTING: checkVersion from config.packages.parmetis(config/BuildSystem/config/package.py:1033) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "parmetis.h" ;petscpkgver(PARMETIS_MAJOR_VERSION.PARMETIS_MINOR_VERSION.PARMETIS_SUBMINOR_VERSION); Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.packages.cuda -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.packages.parmetis -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include /tmp/petsc-EVLAuB/config.packages.parmetis/conftest.c For parmetis need <= 4.0.3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:962) By default we don't care about checking if the library is shared child config.packages.parmetis 4.809146 ============================================================================================= TESTING: consistencyChecks from config.packages.Chaco(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.Chaco 0.001600 Executing: uname -s stdout: Linux ============================================================================================= TESTING: consistencyChecks from config.packages.hdf5(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.hdf5 0.007152 ============================================================================================= TESTING: consistencyChecks from config.packages.med(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.med(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.med 0.001370 ============================================================================================= TESTING: consistencyChecks from config.packages.cgns(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.cgns 0.001224 ============================================================================================= TESTING: consistencyChecks from config.packages.ascem-io(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io 0.001523 ============================================================================================= TESTING: consistencyChecks from config.packages.pflotran(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.pflotran 0.001541 ============================================================================================= TESTING: consistencyChecks from config.packages.alquimia(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.alquimia 0.001613 ============================================================================================= TESTING: consistencyChecks from config.packages.SAMRAI(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SAMRAI(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI 0.001351 child config.packages.flibs 0.000014 ============================================================================================= TESTING: consistencyChecks from config.packages.pnetcdf(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.pnetcdf 0.001346 ============================================================================================= TESTING: consistencyChecks from config.packages.netcdf(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.netcdf 0.001538 ============================================================================================= TESTING: consistencyChecks from config.packages.exodusii(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.exodusii 0.001347 ============================================================================================= TESTING: consistencyChecks from config.packages.fblaslapack(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/packages/fblaslapack.py:27) The Apple Accelerate library uses threads that valgrind cannot handle child config.packages.fblaslapack 0.001455 ============================================================================================= TESTING: consistencyChecks from config.packages.pthread(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.pthread(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:20) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Compiler specific search PTHREAD: ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Found header files [] in ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Checking include with compiler flags var CPPFLAGS ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.packages.cuda -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.packages.parmetis -I/tmp/petsc-EVLAuB/config.headers -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['pthread.h'] in ['/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include', '/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib'] ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.pthread/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.pthread -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.pthread/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.pthread -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.packages.cuda -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.packages.parmetis -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.packages.pthread /tmp/petsc-EVLAuB/config.packages.pthread/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSCTL_H" to "1" ============================================================================================= TESTING: checkVersion from config.packages.pthread(config/BuildSystem/config/package.py:1033) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:962) By default we don't care about checking if the library is shared child config.packages.pthread 0.591637 ============================================================================================= TESTING: consistencyChecks from config.packages.egads(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.001586 ============================================================================================= TESTING: consistencyChecks from config.packages.PTScotch(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.PTScotch 0.001519 ============================================================================================= TESTING: consistencyChecks from config.packages.mmg(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mmg(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.mmg 0.001338 ============================================================================================= TESTING: consistencyChecks from config.packages.parmmg(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.parmmg(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.parmmg 0.001326 ============================================================================================= TESTING: consistencyChecks from config.packages.Zoltan(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.Zoltan 0.001491 ============================================================================================= TESTING: consistencyChecks from config.packages.ADIOS(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADIOS(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS 0.001318 ============================================================================================= TESTING: consistencyChecks from config.packages.openmp(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.openmp 0.001447 ============================================================================================= TESTING: consistencyChecks from config.packages.viennacl(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.viennacl 0.001501 ============================================================================================= TESTING: consistencyChecks from config.packages.ColPack(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ColPack(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.ColPack 0.001315 ============================================================================================= TESTING: consistencyChecks from config.packages.ADOLC(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.001497 ============================================================================================= TESTING: consistencyChecks from config.packages.openblas(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openblas(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.openblas 0.001315 ============================================================================================= TESTING: consistencyChecks from config.packages.blis(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.blis(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.blis 0.001317 ============================================================================================= TESTING: consistencyChecks from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.f2cblaslapack 0.001605 ============================================================================================= TESTING: consistencyChecks from config.packages.BlasLapack(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.BlasLapack(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:455) ================================================================================ Checking for BLAS and LAPACK in User specified BLAS/LAPACK library ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:110) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack'] ['libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-lmpiprofilesupport', '-lmpi_ibm_usempi', '-lmpi_ibm_mpifh', '-lmpi_ibm', '-lgfortran', '-lm', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-lgfortran', '-lm', '-lgcc_s', '-lpthread'] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.pthread -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBLAPACK" to "1" Checking for functions [dgetrs_] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack'] ['libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-lmpiprofilesupport', '-lmpi_ibm_usempi', '-lmpi_ibm_mpifh', '-lmpi_ibm', '-lgfortran', '-lm', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-lgfortran', '-lm', '-lgcc_s', '-lpthread'] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.pthread -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBLAPACK" to "1" Checking for functions [dgeev_] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack'] ['libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-lmpiprofilesupport', '-lmpi_ibm_usempi', '-lmpi_ibm_mpifh', '-lmpi_ibm', '-lgfortran', '-lm', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-lgfortran', '-lm', '-lgcc_s', '-lpthread'] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.pthread -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBLAPACK" to "1" Found Fortran mangling on BLAS/LAPACK which is underscore Defined "BLASLAPACK_UNDERSCORE" to "1" ============================================================================================= TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:552) Check for Intel MKL library Linker output before filtering: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_mkl_set_num_threads': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_mkl_set_num_threads': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status: Checking for functions [mkl_set_num_threads] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-lmpiprofilesupport', '-lmpi_ibm_usempi', '-lmpi_ibm_mpifh', '-lmpi_ibm', '-lgfortran', '-lm', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-lgfortran', '-lm', '-lgcc_s', '-lpthread'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.pthread -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_mkl_set_num_threads': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status ============================================================================================= TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:597) Check for the IBM ESSL library Linker output before filtering: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_iessl': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `iessl' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_iessl': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `iessl' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status: Checking for functions [iessl] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-lmpiprofilesupport', '-lmpi_ibm_usempi', '-lmpi_ibm_mpifh', '-lmpi_ibm', '-lgfortran', '-lm', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-lgfortran', '-lm', '-lgcc_s', '-lpthread'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.pthread -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_iessl': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `iessl' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status ============================================================================================= TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:605) Check for the IBM PESSL library - and error out - if used instead of ESSL Linker output before filtering: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_ipessl': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `ipessl' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status : Linker output after filtering: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_ipessl': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `ipessl' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status: Checking for functions [ipessl] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-lmpiprofilesupport', '-lmpi_ibm_usempi', '-lmpi_ibm_mpifh', '-lmpi_ibm', '-lgfortran', '-lm', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-lgfortran', '-lm', '-lgcc_s', '-lpthread'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.pthread -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-EVLAuB/config.libraries/conftest.o: In function `_check_ipessl': /tmp/petsc-EVLAuB/config.libraries/conftest.c:5: undefined reference to `ipessl' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-EVLAuB/config.libraries/conftest' collect2: error: ld returned 1 exit status ============================================================================================= TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:630) Check for missing LAPACK routines Checking for functions [dgelss_ dgerfs_ dgges_ dhgeqz_ dhseqr_ dorgqr_ dormqr_ dstebz_ dstegr_ dstein_ dsteqr_ dsytri_ dtgsen_ dtrsen_ dtrtrs_ dgeqp3_] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack'] ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-lmpiprofilesupport', '-lmpi_ibm_usempi', '-lmpi_ibm_mpifh', '-lmpi_ibm', '-lgfortran', '-lm', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-lgfortran', '-lm', '-lgcc_s', '-lpthread'] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.pthread -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgelss_(); static void _check_dgelss_() { dgelss_(); } char dgerfs_(); static void _check_dgerfs_() { dgerfs_(); } char dgges_(); static void _check_dgges_() { dgges_(); } char dhgeqz_(); static void _check_dhgeqz_() { dhgeqz_(); } char dhseqr_(); static void _check_dhseqr_() { dhseqr_(); } char dorgqr_(); static void _check_dorgqr_() { dorgqr_(); } char dormqr_(); static void _check_dormqr_() { dormqr_(); } char dstebz_(); static void _check_dstebz_() { dstebz_(); } char dstegr_(); static void _check_dstegr_() { dstegr_(); } char dstein_(); static void _check_dstein_() { dstein_(); } char dsteqr_(); static void _check_dsteqr_() { dsteqr_(); } char dsytri_(); static void _check_dsytri_() { dsytri_(); } char dtgsen_(); static void _check_dtgsen_() { dtgsen_(); } char dtrsen_(); static void _check_dtrsen_() { dtrsen_(); } char dtrtrs_(); static void _check_dtrtrs_() { dtrtrs_(); } char dgeqp3_(); static void _check_dgeqp3_() { dgeqp3_(); } int main() { _check_dgelss_(); _check_dgerfs_(); _check_dgges_(); _check_dhgeqz_(); _check_dhseqr_(); _check_dorgqr_(); _check_dormqr_(); _check_dstebz_(); _check_dstegr_(); _check_dstein_(); _check_dsteqr_(); _check_dsytri_(); _check_dtgsen_(); _check_dtrsen_(); _check_dtrtrs_(); _check_dgeqp3_();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBLAPACK" to "1" ============================================================================================= TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:646) Do the BLAS/LAPACK libraries have a valid lsame() function with correct binding. Checking for functions [lsame_] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib', '-lmpiprofilesupport', '-lmpi_ibm_usempi', '-lmpi_ibm_mpifh', '-lmpi_ibm', '-lgfortran', '-lm', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib', '-Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib', '-lgfortran', '-lm', '-lgcc_s', '-lpthread'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.packages.pthread -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.libraries/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBLAPACK" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBSTDC__" to "1" Defined "HAVE_LIBDL" to "1" Defined "HAVE_LIBMPIPROFILESUPPORT" to "1" Defined "HAVE_LIBMPI_IBM_USEMPI" to "1" Defined "HAVE_LIBMPI_IBM_MPIFH" to "1" Defined "HAVE_LIBMPI_IBM" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBGCC_S" to "1" Defined "HAVE_LIBPTHREAD" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.pthread -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.pthread -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }Executing: mpicc -o /tmp/petsc-EVLAuB/config.setCompilers/libconftest.so -shared -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.setCompilers/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lblas -llapack -lblas -llapack -lm -lstdc++ -ldl -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl ============================================================================================= TESTING: checkRuntimeIssues from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:705) Determines if BLAS/LAPACK routines use 32 or 64 bit integers ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.packages.BlasLapack/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.BlasLapack/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { FILE *output = fopen("runtimetestoutput","w"); extern double ddot_(const int*,const double*,const int *,const double*,const int*); double x1mkl[4] = {3.0,5.0,7.0,9.0}; int one1mkl = 1,nmkl = 2; double dotresultmkl = 0; dotresultmkl = ddot_(&nmkl,x1mkl,&one1mkl,x1mkl,&one1mkl); fprintf(output, "-known-64-bit-blas-indices=%d",dotresultmkl != 34);; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/config.packages.BlasLapack/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.packages.BlasLapack/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl Testing executable /tmp/petsc-EVLAuB/config.packages.BlasLapack/conftest to see if it can be run Executing: /tmp/petsc-EVLAuB/config.packages.BlasLapack/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-EVLAuB/config.packages.BlasLapack/conftest Checking for 64 bit blas indices: result 0 ============================================================================================= TESTING: checkCHeaders from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:530) Check for cblas.h and lapacke.h ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cblas.h', 'lapacke.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.packages.cuda -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.packages.parmetis -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.packages.cuda -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.packages.parmetis -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.headers /tmp/petsc-EVLAuB/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['cblas.h', 'lapacke.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.BlasLapack(config/BuildSystem/config/package.py:1033) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.BlasLapack(config/BuildSystem/config/package.py:962) By default we don't care about checking if the library is shared child config.packages.BlasLapack 4.218054 ============================================================================================= TESTING: consistencyChecks from config.packages.sundials2(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sundials2(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.sundials2 0.001834 ============================================================================================= TESTING: consistencyChecks from config.packages.spai(config/BuildSystem/config/packages/spai.py:53) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.spai(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.spai 0.001561 ============================================================================================= TESTING: consistencyChecks from config.packages.pARMS(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pARMS(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.pARMS 0.001786 ============================================================================================= TESTING: consistencyChecks from config.packages.p4est(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.p4est 0.002134 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/packages/mkl_sparse_optimize.py:48) ============================================================================================= TESTING: checkVersion from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:1033) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:962) By default we don't care about checking if the library is shared child config.packages.mkl_sparse_optimize 0.002264 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_sparse(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mkl_sparse(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.mkl_sparse(config/BuildSystem/config/packages/mkl_sparse.py:21) ============================================================================================= TESTING: checkVersion from config.packages.mkl_sparse(config/BuildSystem/config/package.py:1033) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mkl_sparse(config/BuildSystem/config/package.py:962) By default we don't care about checking if the library is shared child config.packages.mkl_sparse 0.002175 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_cpardiso(config/BuildSystem/config/packages/mkl_cpardiso.py:20) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.mkl_cpardiso 0.001554 ============================================================================================= TESTING: consistencyChecks from config.packages.kokkos(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.kokkos(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.kokkos 0.001353 ============================================================================================= TESTING: consistencyChecks from config.packages.kokkos-kernels(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.kokkos-kernels(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.kokkos-kernels 0.001529 ============================================================================================= TESTING: consistencyChecks from config.packages.htool(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.htool(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.htool 0.001247 ============================================================================================= TESTING: consistencyChecks from config.packages.hpddm(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hpddm(config/BuildSystem/config/packages/hpddm.py:117) Defined make rule "hpddm-build" with dependencies "" and code [] Defined make rule "hpddm-install" with dependencies "" and code [] child config.packages.hpddm 0.001626 ============================================================================================= TESTING: consistencyChecks from config.packages.magma(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.magma(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.magma 0.001593 ============================================================================================= TESTING: consistencyChecks from config.packages.kblas(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.kblas(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.kblas 0.001225 ============================================================================================= TESTING: consistencyChecks from config.packages.hara(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hara(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.hara 0.001439 ============================================================================================= TESTING: consistencyChecks from config.packages.fftw(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.fftw(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.fftw 0.001513 ============================================================================================= TESTING: consistencyChecks from config.packages.elemental(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.elemental(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.elemental 0.001331 ============================================================================================= TESTING: consistencyChecks from config.packages.bamg(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.bamg(config/BuildSystem/config/packages/bamg.py:90) Defined make rule "bamg-build" with dependencies "" and code [] Defined make rule "bamg-install" with dependencies "" and code [] child config.packages.bamg 0.002524 ============================================================================================= TESTING: consistencyChecks from config.packages.ml(config/BuildSystem/config/packages/ml.py:62) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ml(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.ml 0.002491 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_pardiso(config/BuildSystem/config/packages/mkl_pardiso.py:21) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.mkl_pardiso 0.001673 ============================================================================================= TESTING: consistencyChecks from config.packages.SuperLU_DIST(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SuperLU_DIST(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.SuperLU_DIST 0.001529 ============================================================================================= TESTING: consistencyChecks from config.packages.SuperLU(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SuperLU(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.SuperLU 0.005191 Executing: uname -s stdout: Linux ============================================================================================= TESTING: consistencyChecks from config.packages.SuiteSparse(config/BuildSystem/config/packages/SuiteSparse.py:177) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SuiteSparse(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.SuiteSparse 0.007143 ============================================================================================= TESTING: consistencyChecks from config.packages.PaStiX(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PaStiX(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.PaStiX 0.001532 ============================================================================================= TESTING: consistencyChecks from config.packages.scalapack(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.scalapack(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.scalapack 0.001383 ============================================================================================= TESTING: consistencyChecks from config.packages.strumpack(config/BuildSystem/config/packages/strumpack.py:67) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.strumpack(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.strumpack 0.001683 Executing: uname -s stdout: Linux ============================================================================================= TESTING: consistencyChecks from config.packages.MUMPS(config/BuildSystem/config/packages/MUMPS.py:52) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MUMPS(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.MUMPS 0.007164 ============================================================================================= TESTING: consistencyChecks from config.packages.MOAB(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MOAB(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.MOAB 0.001536 ============================================================================================= TESTING: consistencyChecks from config.packages.Chombo(config/BuildSystem/config/packages/Chombo.py:131) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Chombo(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.Chombo 0.001685 ============================================================================================= TESTING: consistencyChecks from config.packages.hypre(config/BuildSystem/config/packages/hypre.py:105) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hypre(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.hypre 0.001811 ============================================================================================= TESTING: consistencyChecks from config.packages.Trilinos(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Trilinos(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.Trilinos 0.001505 ============================================================================================= TESTING: consistencyChecks from config.packages.xSDKTrilinos(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.xSDKTrilinos(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.xSDKTrilinos 0.001337 ============================================================================================= TESTING: consistencyChecks from config.packages.mstk(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mstk(config/BuildSystem/config/package.py:966) Called if --with-packagename=0; does nothing by default child config.packages.mstk 0.001356 ============================================================================================= TESTING: consistencyChecks from config.packages.MFEM(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MFEM(config/BuildSystem/config/packages/MFEM.py:224) Defined make rule "mfem-build" with dependencies "" and code [] Defined make rule "mfem-install" with dependencies "" and code [] child config.packages.MFEM 0.001833 ============================================================================================= TESTING: consistencyChecks from config.packages.AMReX(config/BuildSystem/config/package.py:970) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.AMReX(config/BuildSystem/config/packages/AMReX.py:157) Defined make rule "amrex-build" with dependencies "" and code [] Defined make rule "amrex-install" with dependencies "" and code [] child config.packages.AMReX 0.001908 ============================================================================================= TESTING: configureRTLDDefault from PETSc.Configure(config/PETSc/Configure.py:714) ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c:4:15: error: 'RTLD_DEFAULT' undeclared here (not in a function) void *ptr = RTLD_DEFAULT; ^~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include void *ptr = RTLD_DEFAULT; int main() { ; return 0; } ============================================================================================= TESTING: configurePrefetch from PETSc.Configure(config/PETSc/Configure.py:532) Sees if there are any prefetch functions supported Executing: uname -s stdout: Linux ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c:3:23: fatal error: xmmintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA); ; return 0; } Compile failed inside link ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c:3:23: fatal error: xmmintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *v = 0;_mm_prefetch(v,_MM_HINT_NTA); ; return 0; } Compile failed inside link ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { void *v = 0;__builtin_prefetch(v,0,0); ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -lstdc++ -ldl Defined "Prefetch(a,b,c)" to "__builtin_prefetch((a),(b),(c))" Defined "PREFETCH_HINT_NTA" to "0" Defined "PREFETCH_HINT_T0" to "3" Defined "PREFETCH_HINT_T1" to "2" Defined "PREFETCH_HINT_T2" to "1" ============================================================================================= TESTING: configureUnused from PETSc.Configure(config/PETSc/Configure.py:600) Sees if __attribute((unused)) is supported ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" __attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;} int main() { int i = 0; int j = myfunc(&i); typedef void* atype; __attribute((unused)) atype a; ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -lstdc++ -ldl Defined "UNUSED" to "__attribute((unused))" ============================================================================================= TESTING: configureDeprecated from PETSc.Configure(config/PETSc/Configure.py:618) Check if __attribute((deprecated)) is supported ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" __attribute((deprecated)) static int myfunc(void) { return 1;} int main() { ; return 0; } Defined "DEPRECATED_FUNCTION(why)" to "__attribute((deprecated))" Defined "DEPRECATED_TYPEDEF(why)" to "__attribute((deprecated))" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" enum E {oldval __attribute((deprecated)), newval }; int main() { ; return 0; } Defined "DEPRECATED_ENUM(why)" to "__attribute((deprecated))" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #define TEST _Pragma("GCC warning "Testing _Pragma"") value int main() { ; return 0; } Defined "DEPRECATED_MACRO(why)" to "_Pragma(why)" ============================================================================================= TESTING: configureIsatty from PETSc.Configure(config/PETSc/Configure.py:612) Check if the Unix C function isatty() works correctly Actually just assumes it does not work correctly on batch systems Defined "USE_ISATTY" to "1" ============================================================================================= TESTING: configureExpect from PETSc.Configure(config/PETSc/Configure.py:667) Sees if the __builtin_expect directive is supported ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { if (__builtin_expect(0,1)) return 1;; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -lstdc++ -ldl Defined "HAVE_BUILTIN_EXPECT" to "1" ============================================================================================= TESTING: configureAlign from PETSc.Configure(config/PETSc/Configure.py:651) Check if __attribute(aligned) is supported ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" struct mystruct {int myint;} __attribute((aligned(16))); char assert_aligned[(sizeof(struct mystruct)==16)*2-1]; int main() { ; return 0; } Defined "ATTRIBUTEALIGNED(size)" to "__attribute((aligned(size)))" Defined "HAVE_ATTRIBUTEALIGNED" to "1" ============================================================================================= TESTING: configureFunctionName from PETSc.Configure(config/PETSc/Configure.py:674) Sees if the compiler supports __func__ or a variant. ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -lstdc++ -ldl Defined "FUNCTION_NAME_C" to "__func__" ===== Checking compiler Executing: mpiCC -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } ===== Checking linker Executing: mpiCC -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Executing: mpiCC -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -lstdc++ -ldl Defined "FUNCTION_NAME_CXX" to "__func__" ============================================================================================= TESTING: configureIntptrt from PETSc.Configure(config/PETSc/Configure.py:692) Determine what to use for uintptr_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int x; uintptr_t i = (uintptr_t)&x;; return 0; } Defined "UINTPTR_T" to "uintptr_t" ============================================================================================= TESTING: configureSolaris from PETSc.Configure(config/PETSc/Configure.py:719) Solaris specific stuff ============================================================================================= TESTING: configureLinux from PETSc.Configure(config/PETSc/Configure.py:732) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ============================================================================================= TESTING: configureWin32 from PETSc.Configure(config/PETSc/Configure.py:738) Win32 non-cygwin specific stuff Checking for functions [GetComputerName] in library ['Kernel32.lib'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.libraries/conftest.c:4:21: fatal error: windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Checking for functions [GetComputerName] in library ['kernel32'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.libraries/conftest.c:4:21: fatal error: windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Checking for functions [GetUserName] in library ['Advapi32.lib'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.libraries/conftest.c:4:21: fatal error: windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Checking for functions [GetUserName] in library ['advapi32'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.libraries/conftest.c:4:21: fatal error: windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Checking for functions [GetDC] in library ['User32.lib'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.libraries/conftest.c:4:21: fatal error: windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Checking for functions [GetDC] in library ['user32'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.libraries/conftest.c:4:21: fatal error: windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Checking for functions [CreateCompatibleDC] in library ['Gdi32.lib'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.libraries/conftest.c:4:21: fatal error: windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Checking for functions [CreateCompatibleDC] in library ['gdi32'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.libraries/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/config.libraries/conftest.c:4:21: fatal error: windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Checking for type: int32_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/config.types/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/config.types/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; ; return 0; } ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -lstdc++ -ldl ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { int a=0; if (S_ISDIR(a)){} ; return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -lstdc++ -ldl ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c:3:21: fatal error: windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c:3:21: fatal error: windows.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int flags = O_BINARY;; return 0; } Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" Defined "DIR" to ""/gpfs/alpine/csc314/scratch/adams/petsc"" Defined make macro "wPETSC_DIR" to "/gpfs/alpine/csc314/scratch/adams/petsc" Defined "ARCH" to ""arch-summit-dbg-gnu-cuda"" ============================================================================================= TESTING: configureCygwinBrokenPipe from PETSc.Configure(config/PETSc/Configure.py:816) Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make http://cygwin.com/ml/cygwin/2013-05/msg00340.html Executing: uname -s stdout: Linux ============================================================================================= TESTING: configureDefaultArch from PETSc.Configure(config/PETSc/Configure.py:832) ============================================================================================= TESTING: configureScript from PETSc.Configure(config/PETSc/Configure.py:849) Output a script in the conf directory which will reproduce the configuration ============================================================================================= TESTING: configureInstall from PETSc.Configure(config/PETSc/Configure.py:888) Setup the directories for installation Defined make rule "print_mesg_after_build" with dependencies "" and code ['-@echo "========================================="', '-@echo "Now to check if the libraries are working do:"', '-@echo "${MAKE_USER} PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} check"', '-@echo "========================================="'] ============================================================================================= TESTING: configureGCOV from PETSc.Configure(config/PETSc/Configure.py:904) ============================================================================================= TESTING: configureAtoll from PETSc.Configure(config/PETSc/Configure.py:595) Checks if atoll exists ===== Checking linker Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { long v = atoll("25"); return 0; } Executing: mpicc -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -lstdc++ -ldl Defined "HAVE_ATOLL" to "1" ============================================================================================= Executing: CC -VV Defined "USE_SOCKET_VIEWER" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/PETSc.Configure/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #include int main() { setsockopt(0,SOL_SOCKET,SO_REUSEADDR,0,0); return 0; } Defined "HAVE_SO_REUSEADDR" to "1" ============================================================================================= Executing: mpicc -show stdout: gcc -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -pthread -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm Defined "MPICC_SHOW" to ""gcc -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -pthread -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm"" Defined make macro "CC_FLAGS" to "-fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 " Defined "HAVE_CXX" to "1" Defined make macro "CXXPP_FLAGS" to " -std=gnu++14" Defined make macro "CXX_FLAGS" to "-fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14" Defined make macro "CXX_LINKER" to "mpiCC" Defined make macro "CXX_LINKER_FLAGS" to " -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14" Defined make macro "CPP_FLAGS" to " " Defined make macro "PCC" to "mpicc" Defined make macro "PCC_FLAGS" to "-fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 " Defined make macro "PCPP_FLAGS" to " " Defined make macro "PFLAGS" to "${CFLAGS}" Defined make macro "PPPFLAGS" to "${CPPFLAGS}" Defined make macro "PY_CFLAGS" to "" Defined make macro "PY_CPPFLAGS" to "" Defined make macro "CC_SUFFIX" to "o" Defined make macro "PCC_LINKER" to "mpicc" Defined make macro "PCC_LINKER_FLAGS" to " -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0" Defined make macro "CC_LINKER_SUFFIX" to "" Defined "HAVE_FORTRAN" to "1" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to " -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 " Defined make macro "FC_SUFFIX" to "o" Defined make macro "FC_LINKER" to "mpifort" Defined make macro "FC_LINKER_FLAGS" to " -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 " Defined make macro "FC_MODULE_FLAG" to "-I" Defined make macro "FC_MODULE_OUTPUT_FLAG" to "-J" Defined make macro "CUDAC_FLAGS" to "-g -Xcompiler -lineinfo -Xcompiler -fPIC -gencode arch=compute_70,code=sm_70 -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -Wno-deprecated-gpu-targets " Defined make macro "SL_LINKER" to "mpicc" Defined make macro "SL_LINKER_FLAGS" to "${PCC_LINKER_FLAGS}" Defined make macro "SL_LINKER_SUFFIX" to "so" Defined "SLSUFFIX" to ""so"" Defined make macro "SL_LINKER_LIBS" to "${PETSC_EXTERNAL_LIB_BASIC}" Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" ============================================================================================= Defined make macro "BLASLAPACK_LIB" to "-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack" Defined make macro "BLASLAPACK_INCLUDE" to "" Defined "HAVE_PTHREAD" to "1" Defined make macro "PTHREAD_LIB" to "" Defined make macro "PTHREAD_INCLUDE" to "" Defined "HAVE_PARMETIS" to "1" Defined make macro "PARMETIS_LIB" to "-Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -lparmetis" Defined make macro "PARMETIS_INCLUDE" to "-I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include" Defined "HAVE_METIS" to "1" Defined make macro "METIS_LIB" to "-Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -lmetis" Defined make macro "METIS_INCLUDE" to "-I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include" Defined "HAVE_MATHLIB" to "1" Defined make macro "MATHLIB_LIB" to "-lm" Defined make macro "MATHLIB_INCLUDE" to "" Defined "HAVE_REGEX" to "1" Defined make macro "REGEX_LIB" to "" Defined make macro "REGEX_INCLUDE" to "" Defined "HAVE_SOWING" to "1" Defined make macro "SOWING_LIB" to "" Defined make macro "SOWING_INCLUDE" to "" Defined make macro "MPI_LIB" to "" Defined make macro "MPI_INCLUDE" to "" Defined "HAVE_CUDA" to "1" Defined make macro "CUDA_LIB" to "-Wl,-rpath,/sw/summit/cuda/10.1.243/lib64 -L/sw/summit/cuda/10.1.243/lib64 -lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand" Defined make macro "CUDA_INCLUDE" to "-I/sw/summit/cuda/10.1.243/include" Defined make macro "PETSC_EXTERNAL_LIB_BASIC" to "-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -Wl,-rpath,/sw/summit/cuda/10.1.243/lib64 -L/sw/summit/cuda/10.1.243/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lblas -llapack -lparmetis -lmetis -lm -lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand -lstdc++ -ldl -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl" Defined make macro "PETSC_CC_INCLUDES" to "-I/gpfs/alpine/csc314/scratch/adams/petsc/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include -I/sw/summit/cuda/10.1.243/include" Defined make macro "PETSC_CC_INCLUDES_INSTALL" to "-I/gpfs/alpine/csc314/scratch/adams/petsc/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include -I/sw/summit/cuda/10.1.243/include" Defined make macro "PETSC_FC_INCLUDES" to "-I/gpfs/alpine/csc314/scratch/adams/petsc/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include -I/sw/summit/cuda/10.1.243/include" Defined make macro "PETSC_FC_INCLUDES_INSTALL" to "-I/gpfs/alpine/csc314/scratch/adams/petsc/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include -I/sw/summit/cuda/10.1.243/include" Defined "LIB_DIR" to ""/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib"" Defined make macro "LIBNAME" to "${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}" Defined make macro "SHLIBS" to "libpetsc" Defined make macro "PETSC_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_KSP_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TS_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TAO_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_WITH_EXTERNAL_LIB" to "-L${PETSC_DIR}/${PETSC_ARCH}/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -Wl,-rpath,/sw/summit/cuda/10.1.243/lib64 -L/sw/summit/cuda/10.1.243/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lpetsc -lblas -llapack -lparmetis -lmetis -lm -lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand -lstdc++ -ldl -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl" Defined "USE_SINGLE_LIBRARY" to "1" Defined make macro "PETSC_SYS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_VEC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_MAT_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_DM_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_KSP_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_SNES_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TAO_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CHARACTERISTIC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CONTRIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "CONFIGURE_OPTIONS" to "--with-fc=mpifort --with-cc=mpicc --with-cxx=mpiCC --CFLAGS=\"-fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas\" --CXXFLAGS=\"-fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas\" --CUDAFLAGS=\"-g -Xcompiler -lineinfo\" --FCFLAGS=\"-fPIC -g\" --FCOPTFLAGS=-O0 --COPTFLAGS=-O0 --CXXOPTFLAGS=-O0 --with-ssl=0 --with-batch=0 --with-mpiexec=\"jsrun -g1\" --with-cuda=1 --with-cudac=nvcc --with-cuda-gencodearch=70 --download-metis --download-parmetis --with-blaslapack-lib=\"-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack\" --with-x=0 --with-64-bit-indices=0 --with-debugging=1 PETSC_ARCH=arch-summit-dbg-gnu-cuda" ================================================================================ child PETSc.Configure 4.523213 child sum 127.672354 child total 127.709584 **** arch-summit-dbg-gnu-cuda/lib/petsc/conf/petscvariables **** C_VERSION = gcc (GCC) 6.4.0 AR_ARGFILE = yes FC_DEPFLAGS = -MMD -MP FC_DEFINE_FLAG = -D C_DEPFLAGS = -MMD -MP FC_VERSION = GNU Fortran (GCC) 6.4.0 CUDA_VERSION = nvcc: NVIDIA (R) Cuda compiler driver AR_FLAGS = cr CXX_DEPFLAGS = -MMD -MP MPIFC_SHOW = gfortran -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -pthread -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm Cxx_VERSION = g++ (GCC) 6.4.0 FAST_AR_FLAGS = Scq FC_MODULE_OUTPUT_FLAG = -J PETSC_LANGUAGE = CONLY FC_LINKER_FLAGS = -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 SL_LINKER_SUFFIX = so SL_LINKER = mpicc CC_FLAGS = -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 SOWING_LIB = PETSC_PRECISION = double PETSC_LIB_BASIC = -lpetsc PETSC_DM_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} FC_FLAGS = -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 BLASLAPACK_LIB = -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack PETSC_MAT_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC = mpicc SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC} SHLIBS = libpetsc MATHLIB_INCLUDE = MPI_LIB = PETSC_SNES_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} REGEX_INCLUDE = PETSC_EXTERNAL_LIB_BASIC = -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -Wl,-rpath,/sw/summit/cuda/10.1.243/lib64 -L/sw/summit/cuda/10.1.243/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lblas -llapack -lparmetis -lmetis -lm -lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand -lstdc++ -ldl -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl PETSC_TS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PY_CFLAGS = SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS} PFLAGS = ${CFLAGS} PARMETIS_LIB = -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -lparmetis CC_SUFFIX = o PETSC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CONFIGURE_OPTIONS = --with-fc=mpifort --with-cc=mpicc --with-cxx=mpiCC --CFLAGS=\"-fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas\" --CXXFLAGS=\"-fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas\" --CUDAFLAGS=\"-g -Xcompiler -lineinfo\" --FCFLAGS=\"-fPIC -g\" --FCOPTFLAGS=-O0 --COPTFLAGS=-O0 --CXXOPTFLAGS=-O0 --with-ssl=0 --with-batch=0 --with-mpiexec=\"jsrun -g1\" --with-cuda=1 --with-cudac=nvcc --with-cuda-gencodearch=70 --download-metis --download-parmetis --with-blaslapack-lib=\"-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack\" --with-x=0 --with-64-bit-indices=0 --with-debugging=1 PETSC_ARCH=arch-summit-dbg-gnu-cuda PETSC_FC_INCLUDES_INSTALL = -I/gpfs/alpine/csc314/scratch/adams/petsc/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include -I/sw/summit/cuda/10.1.243/include METIS_INCLUDE = -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include PETSC_CHARACTERISTIC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CXXPP_FLAGS = -std=gnu++14 PTHREAD_LIB = PETSC_SCALAR = real PETSC_FC_INCLUDES = -I/gpfs/alpine/csc314/scratch/adams/petsc/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include -I/sw/summit/cuda/10.1.243/include CPP_FLAGS = PETSC_KSP_LIB_BASIC = -lpetsc FPP_FLAGS = PETSC_CC_INCLUDES_INSTALL = -I/gpfs/alpine/csc314/scratch/adams/petsc/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include -I/sw/summit/cuda/10.1.243/include FC_LINKER = mpifort PPPFLAGS = ${CPPFLAGS} PETSC_KSP_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CXX_FLAGS = -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 PY_CPPFLAGS = PCC_LINKER_FLAGS = -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 PETSC_CONTRIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CXX_LINKER_FLAGS = -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 PCC_LINKER = mpicc PETSC_SYS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC_FLAGS = -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 CUDA_LIB = -Wl,-rpath,/sw/summit/cuda/10.1.243/lib64 -L/sw/summit/cuda/10.1.243/lib64 -lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand PTHREAD_INCLUDE = METIS_LIB = -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -lmetis MATHLIB_LIB = -lm CXX_LINKER = mpiCC PETSC_TAO_LIB_BASIC = -lpetsc BLASLAPACK_INCLUDE = CUDA_INCLUDE = -I/sw/summit/cuda/10.1.243/include PETSC_TS_LIB_BASIC = -lpetsc PETSC_VEC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CC_LINKER_SUFFIX = CUDAC_FLAGS = -g -Xcompiler -lineinfo -Xcompiler -fPIC -gencode arch=compute_70,code=sm_70 -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -Wno-deprecated-gpu-targets PARMETIS_INCLUDE = -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include PCPP_FLAGS = FC_MODULE_FLAG = -I wPETSC_DIR = /gpfs/alpine/csc314/scratch/adams/petsc PETSC_WITH_EXTERNAL_LIB = -L${PETSC_DIR}/${PETSC_ARCH}/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -Wl,-rpath,/sw/summit/cuda/10.1.243/lib64 -L/sw/summit/cuda/10.1.243/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc/powerpc64le-none-linux-gnu/6.4.0 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib/gcc -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/hdf5-1.10.4-qj7qoumocmjj2xkwbwotazo22sugeq5o/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib -Wl,-rpath,/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -L/autofs/nccs-svm1_sw/summit/gcc/6.4.0/lib -lpetsc -lblas -llapack -lparmetis -lmetis -lm -lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand -lstdc++ -ldl -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lgfortran -lm -lgfortran -lm -lgcc_s -lpthread -lstdc++ -ldl SOWING_INCLUDE = PETSC_TAO_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} MPI_INCLUDE = REGEX_LIB = PETSC_CC_INCLUDES = -I/gpfs/alpine/csc314/scratch/adams/petsc/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include -I/sw/summit/cuda/10.1.243/include FC_SUFFIX = o LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX} SHELL = /usr/bin/bash GREP = /usr/bin/grep MV = /usr/bin/mv PYTHON = /usr/bin/python MKDIR = /usr/bin/mkdir -p SEDINPLACE = /usr/bin/sed -i M4 = /usr/bin/m4 SED = /usr/bin/sed DIFF = /usr/bin/diff -w RM = /usr/bin/rm -f CP = /usr/bin/cp CC_LINKER_SLFLAG = -Wl,-rpath, CXXPP = mpiCC -E CC = mpicc RANLIB = /usr/bin/ranlib DYNAMICLINKER = mpicc CXX = mpiCC FC = mpifort CUDAC = nvcc FC_LINKER_SLFLAG = -Wl,-rpath, CPP = mpicc -E AR_LIB_SUFFIX = a LD_SHARED = mpicc AR = /usr/bin/ar CUDAPP = nvcc -E CLANGUAGE = C GIT = git PREFIXDIR = /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda PETSC_SCALAR_SIZE = 64 PETSC_INDEX_SIZE = 32 OMAKE_PRINTDIR = /usr/bin/gmake --print-directory MAKE_NP = 59 NPMAX = 128 MAKE = /usr/bin/gmake MAKE_PAR_OUT_FLG = OMAKE = /usr/bin/gmake --no-print-directory MAKE_LOAD = 166.4 MAKE_TEST_NP = 49 MAKE_USER = make SL_LINKER_FUNCTION = -shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2)) SONAME_FUNCTION = $(1).so.$(2) BUILDSHAREDLIB = yes GDB = /usr/bin/gdb DSYMUTIL = true MPIEXECEXECUTABLE = /sw/summit/xalt/1.2.1/bin/jsrun -g1 HOSTNAME = hostname PING = ping CUDA_CXXFLAGS = -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include HOST = host MPIEXEC = jsrun -g1 CUDA_CXX = gcc SYSTEMNVCC = /sw/summit/cuda/10.1.243/bin/nvcc CMAKE = /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake CTEST = /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/ctest DOCTEXT = /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/doctext BIB2HTML = /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/bib2html PDFLATEX = /usr/bin/pdflatex BFORT = /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/bfort MAPNAMES = /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/mapnames **** arch-summit-dbg-gnu-cuda/lib/petsc/conf/petscrules **** print_mesg_after_build: -@echo "=========================================" -@echo "Now to check if the libraries are working do:" -@echo "${MAKE_USER} PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} check" -@echo "=========================================" libc: ${LIBNAME}(${OBJSC}) libcxx: ${LIBNAME}(${OBJSCXX}) libcu: ${LIBNAME}(${OBJSCU}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} shared_arch: shared_linux amrex-build: amrex-install: mfem-build: mfem-install: slepc-build: slepc-install: bamg-build: bamg-install: hpddm-build: hpddm-install: libmesh-build: libmesh-install: mpi4py-build: mpi4py-install: petsc4py-build: petsc4py-install: petsc4pytest: ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-EVLAuB/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.utilities.closure -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.compilersFortran -I/tmp/petsc-EVLAuB/config.headers -I/tmp/petsc-EVLAuB/config.utilities.cacheDetails -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.featureTestMacros -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/PETSc.options.sharedLibraries -I/tmp/petsc-EVLAuB/PETSc.options.scalarTypes -I/tmp/petsc-EVLAuB/config.packages.metis -I/tmp/petsc-EVLAuB/config.packages.MPI -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.packages.BlasLapack -I/tmp/petsc-EVLAuB/config.packages.pthread -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB/PETSc.Configure -I/tmp/petsc-EVLAuB -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 /tmp/petsc-EVLAuB/conftest.c Possible ERROR while running compiler: stderr: cc1: warning: command line option '-Wno-literal-suffix' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-Wno-invalid-offsetof' is valid for C++/ObjC++ but not for C cc1: warning: command line option '-ftemplate-depth=99' is valid for C++/ObjC++ but not for C Source: #include "confdefs.h" #include "conffix.h" #pragma GCC poison TEST int main() { ; return 0; } ===== Checking compiler Executing: mpiCC -c -o /tmp/petsc-EVLAuB/conftest.o -I/tmp/petsc-EVLAuB/config.compilerFlags -I/tmp/petsc-EVLAuB/config.compilers -I/tmp/petsc-EVLAuB/config.setCompilers -I/tmp/petsc-EVLAuB/config.types -I/tmp/petsc-EVLAuB/config.functions -I/tmp/petsc-EVLAuB/config.utilities.missing -I/tmp/petsc-EVLAuB/config.libraries -I/tmp/petsc-EVLAuB -I/tmp/petsc-EVLAuB/PETSc.Configure -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 /tmp/petsc-EVLAuB/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #pragma GCC poison TEST int main() { ; return 0; } **** arch-summit-dbg-gnu-cuda/include/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_ARCH "arch-summit-dbg-gnu-cuda" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_Alignx(a,b) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CUDA_GENERATION 70 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated)) #define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated)) #define PETSC_DEPRECATED_MACRO(why) _Pragma(why) #define PETSC_DEPRECATED_TYPEDEF(why) __attribute((deprecated)) #define PETSC_DIR "/gpfs/alpine/csc314/scratch/adams/petsc" #define PETSC_DIR_SEPARATOR '/' #define PETSC_FORTRAN_CHARLEN_T int #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CUDA 1 #define PETSC_HAVE_CUDA_DIALECT_CXX11 1 #define PETSC_HAVE_CUDA_DIALECT_CXX14 1 #define PETSC_HAVE_CUSOLVERDNDPOTRI 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX_FIX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_METIS 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_GPU_AWARE 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_OMPI_MAJOR_VERSION 10 #define PETSC_HAVE_OMPI_MINOR_VERSION 03 #define PETSC_HAVE_OMPI_RELEASE_VERSION 01 #define PETSC_HAVE_PARMETIS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SOWING 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LIB_DIR "/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib" #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 16 #define PETSC_MPICC_SHOW "gcc -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -pthread -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm" #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_PREFETCH_HINT_NTA 0 #define PETSC_PREFETCH_HINT_T0 3 #define PETSC_PREFETCH_HINT_T1 2 #define PETSC_PREFETCH_HINT_T2 1 #define PETSC_PYTHON_EXE "/usr/bin/python" #define PETSC_Prefetch(a,b,c) __builtin_prefetch((a),(b),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_SLSUFFIX "so" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_INFO 1 #define PETSC_USE_ISATTY 1 #define PETSC_USE_LOG 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_VERSION_BRANCH_GIT "main" #define PETSC_VERSION_DATE_GIT "2021-06-07 02:44:02 +0000" #define PETSC_VERSION_GIT "v3.15.0-734-gc2c1a54" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #endif **** arch-summit-dbg-gnu-cuda/include/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif **** arch-summit-dbg-gnu-cuda/include/petscpkg_version.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_PKG_MPI_VERSION_MAJOR 3 #define PETSC_PKG_MPI_VERSION_MINOR 0 #define PETSC_PKG_MPI_VERSION_SUBMINOR 0 #define PETSC_PKG_MPI_VERSION_ PETSC_PKG_MPI_VERSION_EQ #define PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_MPI_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_CUDA_VERSION_MAJOR 10 #define PETSC_PKG_CUDA_VERSION_MINOR 1 #define PETSC_PKG_CUDA_VERSION_SUBMINOR 0 #define PETSC_PKG_CUDA_VERSION_ PETSC_PKG_CUDA_VERSION_EQ #define PETSC_PKG_CUDA_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_CUDA_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_CUDA_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_CUDA_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_CUDA_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_CUDA_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_CUDA_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_CUDA_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_CUDA_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_CUDA_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_CUDA_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_CUDA_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_CUDA_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_CUDA_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_CUDA_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_CUDA_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_CUDA_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_METIS_VERSION_MAJOR 5 #define PETSC_PKG_METIS_VERSION_MINOR 1 #define PETSC_PKG_METIS_VERSION_SUBMINOR 0 #define PETSC_PKG_METIS_VERSION_ PETSC_PKG_METIS_VERSION_EQ #define PETSC_PKG_METIS_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_METIS_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_METIS_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_METIS_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_METIS_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_METIS_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_METIS_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_METIS_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_METIS_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_METIS_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_METIS_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_METIS_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_METIS_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_METIS_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_METIS_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_METIS_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_METIS_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PARMETIS_VERSION_MAJOR 4 #define PETSC_PKG_PARMETIS_VERSION_MINOR 0 #define PETSC_PKG_PARMETIS_VERSION_SUBMINOR 3 #define PETSC_PKG_PARMETIS_VERSION_ PETSC_PKG_PARMETIS_VERSION_EQ #define PETSC_PKG_PARMETIS_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_PARMETIS_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_PARMETIS_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_PARMETIS_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_PARMETIS_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_PARMETIS_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_PARMETIS_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_PARMETIS_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_PARMETIS_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_PARMETIS_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_PARMETIS_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_PARMETIS_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_PARMETIS_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PARMETIS_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_PARMETIS_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PARMETIS_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_PARMETIS_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #endif Attempting to save configure hash file: arch-summit-dbg-gnu-cuda/lib/petsc/conf/configure-hash Saved configure hash file: arch-summit-dbg-gnu-cuda/lib/petsc/conf/configure-hash Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- Framework: Directory creation : Created the external packages directory: /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages RDict update : Substitutions were stored in RDict with parent None File creation : Created makefile configure header arch-summit-dbg-gnu-cuda/lib/petsc/conf/petscvariables File creation : Created makefile configure header arch-summit-dbg-gnu-cuda/lib/petsc/conf/petscrules File creation : Created configure header arch-summit-dbg-gnu-cuda/include/petscconf.h File creation : Created C specific configure header arch-summit-dbg-gnu-cuda/include/petscfix.h File creation : Created configure pkg header arch-summit-dbg-gnu-cuda/include/petscpkg_version.h SOWING: Download : Downloaded SOWING into /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.sowing Install : Installed SOWING into /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda PETSc: File creation : Generated Fortran stubs Build : Set default architecture to arch-summit-dbg-gnu-cuda in lib/petsc/conf/petscvariables File creation : Created arch-summit-dbg-gnu-cuda/lib/petsc/conf/reconfigure-arch-summit-dbg-gnu-cuda.py for automatic reconfiguration METIS: Download : Downloaded METIS into /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.metis Install : Installed METIS into /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda PARMETIS: Download : Downloaded PARMETIS into /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/externalpackages/git.parmetis Install : Installed PARMETIS into /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda Compilers: C Compiler: mpicc -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 Version: gcc (GCC) 6.4.0 CUDA Compiler: nvcc -g -Xcompiler -lineinfo -Xcompiler -fPIC -gencode arch=compute_70,code=sm_70 -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -Wno-deprecated-gpu-targets Version: nvcc: NVIDIA (R) Cuda compiler driver C++ Compiler: mpiCC -fPIC -g -std=c++11 -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 -std=gnu++14 -fPIC -std=gnu++14 Version: g++ (GCC) 6.4.0 Fortran Compiler: mpifort -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 Version: GNU Fortran (GCC) 6.4.0 Linkers: Shared linker: mpicc -shared -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 Dynamic linker: mpicc -shared -fPIC -g -mcpu=native -Wno-unused-but-set-variable -Wno-long-long -Wno-sign-compare -Wno-deprecated -ftemplate-depth-99 -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-invalid-offsetof -Wno-variadic-macros -Wno-unknown-pragmas -O0 Libraries linked against: -lstdc++ -ldl BlasLapack: Library: -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack Unknown if this uses OpenMP (try export OMP_NUM_THREADS=<1-4> yourprogram -log_view) uses 4 byte integers MPI: Version: 3 Mpiexec: jsrun -g1 OMPI_VERSION: 10.03.01 cuda: Version: 10.1 Includes: -I/sw/summit/cuda/10.1.243/include Library: -Wl,-rpath,/sw/summit/cuda/10.1.243/lib64 -L/sw/summit/cuda/10.1.243/lib64 -lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand CUDA SM 70 CUDA underlying compiler: CUDA_CXX gcc CUDA underlying compiler flags: CUDA_CXXFLAGS -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include pthread: cmake: Version: 3.20.2 /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake metis: Version: 5.1.0 Includes: -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include Library: -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -lmetis parmetis: Version: 4.0.3 Includes: -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/include Library: -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/lib -lparmetis regex: sowing: Version: 1.1.26 /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-dbg-gnu-cuda/bin/bfort Language used to compile PETSc: C PETSc: PETSC_ARCH: arch-summit-dbg-gnu-cuda PETSC_DIR: /gpfs/alpine/csc314/scratch/adams/petsc Prefix: Scalar type: real Precision: double Integer size: 4 bytes Single library: yes Shared libraries: yes Memory alignment from malloc(): 16 bytes Using GNU make: /usr/bin/gmake xxx=========================================================================xxx Configure stage complete. Now build PETSc libraries with: make PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc PETSC_ARCH=arch-summit-dbg-gnu-cuda all xxx=========================================================================xxx ================================================================================ Finishing configure run at Mon, 07 Jun 2021 15:41:00 -0400 ================================================================================