Executing: uname -s stdout: Linux ================================================================================ ================================================================================ Starting configure run at Sat, 29 May 2021 22:46:57 -0400 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-fc=0 --CFLAGS="-fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4" --CXXFLAGS="-fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4" --COPTFLAGS=-O0 --CXXOPTFLAGS=-O0 --CUDAOPTFLAGS=-O0 --CUDAFLAGS="-Xcompiler -rdynamic -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4" --with-ssl=0 --with-batch=0 --with-cxx=mpicxx --with-mpiexec="jsrun -g1 " --with-openmp=0 --with-cuda=1 --with-cuda-gencodearch=70 --with-cudac=nvcc --download-p4est=1 --download-zlib --download-triangle --with-blaslapack-lib="-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/netlib-lapack-3.8.0-p74bsneivus4jck562lq7drw2s7i4ytd/lib64 -lblas -llapack" --with-cc=mpicc --with-shared-libraries=1 --with-x=0 --with-64-bit-indices=0 --with-debugging=1 --download-kokkos --with-ctable=0 --with-make-np=8 --download-kokkos-kernels --with-kokkos-kernels-tpl=0 --download-kokkos-cmake-arguments="-DKokkos_ENABLE_AGGRESSIVE_VECTORIZATION=ON -DKokkos_ARCH_POWER9=ON" PETSC_ARCH=arch-summit-opt-gnu-kokkos-notpl-cuda10 Working directory: /gpfs/alpine/csc314/scratch/adams/petsc Machine platform: ('Linux', 'login2', '4.14.0-115.21.2.el7a.ppc64le', '#1 SMP Thu May 7 22:22:31 UTC 2020', 'ppc64le', 'ppc64le') Python version: 2.7.5 (default, Feb 26 2020, 09:25:01) [GCC 4.8.5 20150623 (Red Hat 4.8.5-36)] ================================================================================ Environmental variables LMOD_FAMILY_MPI=spectrum-mpi XL_LINKER=/sw/summit/xalt/1.2.1/bin/ld __LMOD_REF_COUNT_MODULEPATH=/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/spectrum-mpi/10.3.1.2-20200121-chae23s/gcc/8.1.1:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/8.1.1:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core:1;/sw/summit/modulefiles/core:1 LMOD_SETTARG_FULL_SUPPORT=no PAMI_IBV_ADAPTER_AFFINITY=1 CUDA_DIR=/sw/summit/cuda/10.1.243 SHELL=/bin/bash LMOD_MPI_VERSION=10.3.1.2-20200121-chae23s HISTSIZE=100 OLCF_FAMILY_MPI=spectrum-mpi MANPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/share/man:/sw/summit/gcc/8.1.1/share/man:/sw/summit/cuda/10.1.243/doc/man:/sw/sources/hpss/man:/sw/summit/lmod/8.2.10/share/man:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/man::/opt/puppetlabs/puppet/share/man XDG_RUNTIME_DIR=/run/user/62983 PYTHONPATH=/sw/summit/xalt/1.2.1/site:/sw/summit/xalt/1.2.1/libexec __LMOD_REF_COUNT_LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/lib:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/netlib-lapack-3.8.0-p74bsneivus4jck562lq7drw2s7i4ytd/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib:1 LMOD_FAMILY_COMPILER_VERSION=8.1.1 __LMOD_REF_COUNT_CMAKE_PREFIX_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/netlib-lapack-3.8.0-p74bsneivus4jck562lq7drw2s7i4ytd:1;/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43:1 __Init_Default_Modules=1 XDG_SESSION_ID=25009 LMOD_FAMILY_COMPILER=gcc OLCF_LMOD_ROOT=/sw/summit OMPI_FC=gfortran HOSTNAME=login2 JSM_JSRUN_NO_WARN_TOPOLOGY=1 DDT_HOME=/sw/summit/forge/20.0.1 _ModuleTable002_=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 PETSC_ARCH=arch-summit-opt-gnu-kokkos-notpl-cuda MAIL=/var/spool/mail/adams 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OMPI_MCA_io=romio321 __LMOD_REF_COUNT_MANPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/share/man:1;/sw/summit/gcc/8.1.1/share/man:1;/sw/summit/cuda/10.1.243/doc/man:1;/sw/sources/hpss/man:1;/sw/summit/lmod/8.2.10/share/man:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/man:1;/opt/puppetlabs/puppet/share/man:1 OLCF_NETLIB_LAPACK_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/netlib-lapack-3.8.0-p74bsneivus4jck562lq7drw2s7i4ytd OLCF_CUDA_ROOT=/sw/summit/cuda/10.1.243 LESSOPEN=||/usr/bin/lesspipe.sh %s LSF_BINDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin _ModuleTable008_=dy9zdW1taXQvbW9kdWxlZmlsZXMvY29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvc3cvc3VtbWl0L21vZHVsZWZpbGVzL3NpdGUvbGludXgtcmhlbDctcHBjNjRsZS9Db3JlOi9zdy9zdW1taXQvbW9kdWxlZmlsZXMvY29yZSIsfQ== CPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/include:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/netlib-lapack-3.8.0-p74bsneivus4jck562lq7drw2s7i4ytd/include:/sw/summit/cuda/10.1.243/include USER=adams LSF_ENVDIR=/opt/ibm/spectrumcomputing/lsf/conf PAMI_ENABLE_STRIPING=0 PS1=\A\[\033[;1m\]\[\033[35m\]$(ret=$?; [ $ret -ne 0 ] && echo -n " $ret")\[\033[;0m\] \[\033[34m\]$(__git_ps1 '%s') \[\033[32m\]\w\[\033[0m\]\$ OLCF_SPECTRUM_MPI_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33 __LMOD_REF_COUNT_LD_LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/lib:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/netlib-lapack-3.8.0-p74bsneivus4jck562lq7drw2s7i4ytd/lib64:1;/sw/summit/gcc/8.1.1/lib64:1;/sw/summit/cuda/10.1.243/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib:1 SHLVL=1 __LMOD_REF_COUNT_ACLOCAL_PATH=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/share/aclocal:1 DISPLAY=localhost:36.0 OLCF_FAMILY_COMPILER=gcc PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc OPAL_PREFIX=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33 LMOD_FAMILY_MPI_VERSION=10.3.1.2-20200121 MODULESHOME=/sw/summit/lmod/8.2.10 XALT_ETC_DIR=/sw/summit/xalt/1.2.1/etc _ModuleTable007_=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 __LMOD_REF_COUNT_PKG_CONFIG_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/netlib-lapack-3.8.0-p74bsneivus4jck562lq7drw2s7i4ytd/lib64/pkgconfig:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/pkgconfig:1 _ModuleTable001_=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 __LMOD_REF_COUNT_PYTHONPATH=/sw/summit/xalt/1.2.1/site:1;/sw/summit/xalt/1.2.1/libexec:1 LMOD_VERSION=8.2.10 PAMI_CUDA_AWARE_THRESH=320000 PKG_CONFIG_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/netlib-lapack-3.8.0-p74bsneivus4jck562lq7drw2s7i4ytd/lib64/pkgconfig:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/pkgconfig BASH_ENV=/sw/summit/lmod/8.2.10/init/bash __LMOD_REF_COUNT_PATH=/sw/sources/lsf-tools/2.0/summit/bin:2;/sw/summit/xalt/1.2.1/bin:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/bin:1;/sw/summit/gcc/8.1.1/bin:1;/sw/summit/forge/20.0.1/bin:1;/sw/summit/cuda/10.1.243/bin:1;/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin:1;/sw/sources/hpss/bin:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin:1;/opt/ibm/csm/bin:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1;/opt/ibm/flightlog/bin:1;/opt/ibutils/bin:1;/opt/ibm/spectrum_mpi/jsm_pmix/bin:1;/opt/puppetlabs/bin:1;/usr/lpp/mmfs/bin:1 _=/ccs/home/adams/arch-summit-opt-gnu-kokkos-cuda.py MODULEPATH=/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/spectrum-mpi/10.3.1.2-20200121-chae23s/gcc/8.1.1:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/8.1.1:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core:/sw/summit/modulefiles/core SSH_CONNECTION=160.91.202.153 38318 128.219.134.72 22 OMP_NUM_THREADS=1 OLCF_FAMILY_MPI_VERSION=10.3.1.2-20200121 AUTOGEN_PARALLEL=1 LMOD_MPI_NAME=spectrum-mpi _LMFILES_=/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/hsi/5.0.2.p5.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/xalt/1.2.1.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/lsf-tools/2.0.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/darshan-runtime/3.1.7.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/DefApps.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cmake/3.20.2.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cuda/10.1.243:/sw/summit/modulefiles/core/forge/20.0.1:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/gcc/8.1.1.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/8.1.1/netlib-lapack/3.8.0.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/8.1.1/spectrum-mpi/10.3.1.2-20200121.lua OMPI_CXX=g++ __LMOD_REF_COUNT_LOADEDMODULES=hsi/5.0.2.p5:1;xalt/1.2.1:1;lsf-tools/2.0:1;darshan-runtime/3.1.7:1;DefApps:1;cmake/3.20.2:1;cuda/10.1.243:1;forge/20.0.1:1;gcc/8.1.1:1;netlib-lapack/3.8.0:1;spectrum-mpi/10.3.1.2-20200121:1 LMOD_DIR=/sw/summit/lmod/8.2.10/libexec GIT_PS1_SHOWDIRTYSTATE=1 PAMI_IBV_ENABLE_DCT=1 LMOD_PKG=/sw/summit/lmod/8.2.10 MODULEPATH_ROOT=/sw/summit/modulefiles HOME=/ccs/home/adams LD_LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/lib:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/netlib-lapack-3.8.0-p74bsneivus4jck562lq7drw2s7i4ytd/lib64:/sw/summit/gcc/8.1.1/lib64:/sw/summit/cuda/10.1.243/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib LSF_SERVERDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc CUDAPATH=/sw/summit/cuda/10.1.243 LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/lib:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/netlib-lapack-3.8.0-p74bsneivus4jck562lq7drw2s7i4ytd/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib LMOD_SYSTEM_NAME=summit __LMOD_REF_COUNT__LMFILES_=/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/hsi/5.0.2.p5.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/xalt/1.2.1.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/lsf-tools/2.0.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/darshan-runtime/3.1.7.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/DefApps.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cmake/3.20.2.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cuda/10.1.243:1;/sw/summit/modulefiles/core/forge/20.0.1:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/gcc/8.1.1.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/8.1.1/netlib-lapack/3.8.0.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/8.1.1/spectrum-mpi/10.3.1.2-20200121.lua:1 GIT_PS1_SHOWUPSTREAM=auto CUDA_TOOLKIT_ROOT_DIR=/sw/summit/cuda/10.1.243 _ModuleTable_Sz_=8 OLCF_MODULEPATH_ROOT=/sw/summit/modulefiles OMPI_CC=gcc __LMOD_REF_COUNT_CPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/include:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/netlib-lapack-3.8.0-p74bsneivus4jck562lq7drw2s7i4ytd/include:1;/sw/summit/cuda/10.1.243/include:1 LMOD_CMD=/sw/summit/lmod/8.2.10/libexec/lmod PROJWORK=/gpfs/alpine/proj-shared _ModuleTable005_=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 BASH_FUNC_module()=() { eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh) } XLSF_UIDDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib/uid OLCF_DARSHAN_RUNTIME_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43 OLCF_GCC_ROOT=/sw/summit/gcc/8.1.1 SSH_TTY=/dev/pts/154 CVS_RSH=ssh _ModuleTable006_=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 OLDPWD=/gpfs/alpine/csc314/scratch/adams PAMI_IBV_ENABLE_OOO_AR=1 OMPI_LD_PRELOAD_PREPEND=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/libdarshan.so LMOD_SYSTEM_DEFAULT_MODULES=DefApps SSH_CLIENT=160.91.202.153 38318 22 LOGNAME=adams ACLOCAL_PATH=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/share/aclocal PATH=/sw/sources/lsf-tools/2.0/summit/bin:/sw/summit/xalt/1.2.1/bin:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/bin:/sw/summit/gcc/8.1.1/bin:/sw/summit/forge/20.0.1/bin:/sw/summit/cuda/10.1.243/bin:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin:/sw/sources/hpss/bin:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin:/opt/ibm/csm/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibm/flightlog/bin:/opt/ibutils/bin:/opt/ibm/spectrum_mpi/jsm_pmix/bin:/opt/puppetlabs/bin:/usr/lpp/mmfs/bin TERM=xterm-256color CMAKE_PREFIX_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/netlib-lapack-3.8.0-p74bsneivus4jck562lq7drw2s7i4ytd:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43 OPAL_LIBDIR=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/lib MEMBERWORK=/gpfs/alpine/scratch/adams LSF_LIBDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib OLCF_CMAKE_ROOT=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm _ModuleTable003_=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 XALT_OLCF=1 __LMOD_Priority_PATH=/sw/sources/lsf-tools/2.0/summit/bin:-9999;/sw/summit/xalt/1.2.1/bin:-9999 OMPI_DIR=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33 OLCF_FAMILY_COMPILER_VERSION=8.1.1 BASH_FUNC_ml()=() { eval $($LMOD_DIR/ml_cmd "$@") } PAMI_IBV_QP_SERVICE_LEVEL=8 MPI_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33 WORLDWORK=/gpfs/alpine/world-shared LMOD_sys=Linux LOADEDMODULES=hsi/5.0.2.p5:xalt/1.2.1:lsf-tools/2.0:darshan-runtime/3.1.7:DefApps:cmake/3.20.2:cuda/10.1.243:forge/20.0.1:gcc/8.1.1:netlib-lapack/3.8.0:spectrum-mpi/10.3.1.2-20200121 LMOD_ROOT=/sw/summit/lmod HISTCONTROL=ignoredups PWD=/gpfs/alpine/csc314/scratch/adams/petsc _ModuleTable004_=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 BINARY_TYPE_HPC= OLCF_HSI_ROOT=/sw/sources/hpss Files in path provided by default path /sw/sources/lsf-tools/2.0/summit/bin: bsub bjob showusage test_bsub /sw/summit/xalt/1.2.1/bin: jsrun ld xalt_helper_functions.sh /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/bin: shmemrun profile2mat.pl oshrun oshmem_info orterun orted orte-server orte-info orte-clean ompi_info ompi-server ompi-clean mpitool mpirun mpijob mpiexec jumpshot get_nl_setting efix alias.pl aggregate_profile.pl stock shmemfort shmemcxx shmemcc shmemc++ shmemCC oshfort oshcxx oshcc oshc++ oshCC ortecc opal_wrapper mpixlf mpixlc mpixlC mpipgifort mpipgicc mpipgic++ mpifort mpif90 mpif77 mpicxx mpicc mpic++ mpiCC mpip-jsrun /sw/summit/gcc/8.1.1/bin: nvptx-none-as nvptx-none-ld nvptx-none-run nvptx-none-run-single nvptx-none-ar nvptx-none-ranlib powerpc64le-unknown-linux-gnu-accel-nvptx-none-gcc g++ c++ powerpc64le-unknown-linux-gnu-g++ powerpc64le-unknown-linux-gnu-c++ gfortran powerpc64le-unknown-linux-gnu-gfortran gcov gcov-tool gcov-dump cpp gcc powerpc64le-unknown-linux-gnu-gcc-8.1.1 gcc-ar powerpc64le-unknown-linux-gnu-gcc powerpc64le-unknown-linux-gnu-gcc-ar gcc-nm powerpc64le-unknown-linux-gnu-gcc-nm gcc-ranlib powerpc64le-unknown-linux-gnu-gcc-ranlib /sw/summit/forge/20.0.1/bin: ddt-debugger-mps ddt ddt-debugger allinea-client ddt-mpirun forge-probe forge make-profiler-libraries ddt-debugger-ll map ddt-client /sw/summit/cuda/10.1.243/bin: cuobjdump cuda-gdb cuda-gdbserver gpu-library-advisor cuda-memcheck nsight nsight_ee_plugins_manage.sh nv-nsight-cu-cli bin2c crt cudafe++ fatbinary nvcc nvcc.profile nvlink ptxas nvdisasm nvprof nvprune computeprof nvvp cuda-install-samples-10.1.sh /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin: ccmake cmake ctest cpack /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin: darshan-mk-log-dirs.pl darshan-gen-cc.pl darshan-gen-cxx.pl darshan-gen-fortran.pl darshan-config /sw/sources/hpss/bin: htar 5.0.2.9 6.0.0.11 5.0.2.11 hsi 6.2.0.1 6.3 6.3.1 TA_Status test_TA /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc: esub esub.poe pim lsf_daemons rla elim.jsdl named esub.tv esub.openmp esub.mvapich esub.dprov sbatchd esub.bproc esub.openmpi esub.oldtvpoe esub.mpichp4 elim.frequency esub.tvlammpi esub.oldpoe lim esub.ls_dyna esub.tvmpich_gm esub.fluent nios esub.gold esub.mpich_gm esub.pvm esub.intelmpi esub.mpich_mx eauth.krb5 res tmp.elim.sa eauth esub.tvpoe mesub esub.mpich2 melim esub.lammpi /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin: brsvjob lspasswd bmgroup bpost btop bclusters lsplace bjdepinfo lsreghost brsvs bparams bgadd lsrun lsload breconfig lsfrestart bconf bmod bsub lsunlockhost bmodify bread bacct lsfrsv lsgrun bslots bapp bjobs lsmail lsfstartup lsmake4 lslockhost lsfshutdown bpeek lsrun.sh lslogin bimages bchkpnt bwait lsfhadoop.sh bsla brsvmod lsrtasks blimits busers bresources bqueues brequeue bmg lsrcp lseligible lshosts lsloadadj breboot lsacct lsclusters bugroup lsltasks lsadmin bstatus bgbroker bgdel bentags lsportcheck brsvsub lsf-start-spark.sh bqc bhpart lsf-spark-shell.sh lsmakerm lsf-spark-submit.sh brestart bswitch bjgroup lsreconfig lammpirun_wrapper lsf-stop-spark.sh badmin bbot bstop lsinfo brun bhist bhosts bgmod brsvadd bkill brlainfo brsvdel xagent bresize bmig lsmon lsid bgpinfo lsmake bresume blaunch lsacctmrg /opt/ibm/csm/bin: csm_bb_vg_create csm_node_find_job csm_cluster_query_state csm_allocation_create csm_ib_cable_update csm_allocation_query_active_all csm_bb_lv_delete csm_allocation_update_state csm_switch_attributes_update csm_soft_failure_recovery csm_diag_run_query csm_allocation_step_begin csm_bb_vg_delete csm_node_attributes_query_history csm_allocation_query_details csm_node_attributes_query_details csm_diag_run_query_details csm_ras_event_create csm_diag_run_begin csm_node_resources_query_all csm_allocation_query csm_ras_event_query_allocation csm_switch_attributes_query csm_node_attributes_query csm_switch_attributes_query_details csm_infrastructure_health_check csm_node_attributes_update csm_ras_msg_type_create csm_ras_msg_type_delete csm_ras_msg_type_query csm_node_query_state_history csm_switch_attributes_query_history csm_allocation_step_query_active_all csm_bb_lv_create csm_node_resources_query csm_allocation_delete csm_ras_event_query csm_allocation_resources_query csm_diag_result_create csm_node_delete csm_ras_msg_type_update csm_bb_vg_query csm_ib_cable_query_history csm_diag_run_end csm_allocation_step_query csm_allocation_step_query_details csm_allocation_update_history csm_allocation_step_end csm_ib_cable_query csm_jsrun_cmd csm_bb_lv_query /usr/local/bin: /usr/bin: singularity run-singularity sview strigger sstat sshare srun sreport squeue sprio smap sinfo sgather sdiag scontrol scancel sbcast sbatch sattach salloc sacctmgr sacct jobsub jobstat ctags diffstat rpmsign swig ccache-swig ocs cscope-indexer cscope doxygen unwrapdiff splitdiff rediff recountdiff lsdiff interdiff grepdiff flipdiff fixcvsdiff filterdiff espdiff editdiff dehtmldiff combinediff yacc byacc indent rlog rcsmerge rcsfreeze rcsdiff rcsclean rcs merge ident co 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abrt-handle-upload abrt-action-save-package-data abrt-action-notify abrt-action-analyze-xorg reporter-ureport reporter-rhtsupport libtar satyr git git-receive-pack git-upload-archive git-upload-pack git-shell lex tset pk12util as lpr.cups speaker-test manpath hwloc-gather-topology hwloc-calc rev snmpconf sctp_darn trust nm fc-pattern ucs2any zforce groups gunzip tracepath rdma_xclient unalias db_upgrade dbus-uuidgen uuidgen uname df fc-match evim schemagen sessreg rdoc gdbus-codegen perl perl5.16.3 egrep mlxcables recode-sr-latin pkcheck GET rvim addr2line gsdj500 rpmbuild amixer unexpand ypchsh yppasswd ypchfn install cancel.cups msggrep mwm gcc-nm remunge ibgenperm thumbpdf nsenter clean-binary-files httpcfg mlnx_dump_parser ghci autoexpect ntpstat texluac dtestsrq lz4cat pkttyagent python2 pkla-admin-identities hpc tail size fc-query mkluatexfontdb dbus-cleanup-sockets nisdomainname ldapurl xsd startx crash mcdiff make gslp mktexfmt pmafm xdg-desktop-icon ldappasswd csh printenv 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gem coredumpctl eu-size conjure mlnx_conf_mgr.sh alsaunmute command cd sha1sum xsltproc hp2ps erb update-desktop-database gtk-update-icon-cache crontab icewm mktexmf whoami ttmkfdir uxterm ucx_perftest ibcongest mlnx_perf funzip ghc pkg-config nvidia-persistenced unzipsfx bootctl fc-conflist pango-querymodules-64 splain curl arch xinit pfbtopfa mozroots setsid setterm gr2fonttest wqdump gzexe gtk-launch compare aseqdump cc nvidia-debugdump icesh udevadm lc icehelp gvimdiff taskset xml2-config pkill bzmore mogrify systemd-analyze mkdir lpq.cups libpng15-config mc repstopdf ld ld.bfd systemd-sysv-convert nproc dbpmda cksum psed s2p msghack tabs systemd-coredumpctl jmap libtoolize etags.emacs gtester pmie fg ps2pdfwr peekfd ib_atomic_bw preconv dtestx aria_dump_log gpg-error pmtrace allec post-grohtml tree net-snmp-create-v3-user bunzip2 zcat xzless lscpu xzmore udaddy alsamixer find2perl dtestcm iconv rpm2cpio desktop-file-edit ps2pdf13 ldapexop hwloc-assembler rpmquery ibv_umr chown 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lz4c ppc64le-redhat-linux-g++ c++ g++ ppc64le-redhat-linux-c++ montage ghostscript diff3 dcgmi ibdiagpath pmfind free ghc-doc-index gpg-zip tcsh mconfig gpgv2 jdb pmpython allneeded icewmhint pinky rmid ebrowse lsblk xmlwf memhog ruby eu-findtextrel dislocate vncviewer less ibdev2netdev lsmem systemd-ask-password kpsereadlink lstopo-no-graphics bzcat python2-config cat ngettext gtk-query-immodules-3.0-64 apropos dimax_init icewmtray linux64 mstcongestion gdb-add-index who dviluatex xwud pstack ldapmodrdn bzgrep ucx_read_profile ionice bison rmic mktexpk ppc32 ranlib jhat slabtop x11perf systemd-cgtop wait catman xauth systemd-cat cancel bg env xkill pmlc numactl tnameserv pmdbg at convert Xvnc flint_ext strings soapsuds gstack msgcmp mkofm ssh-keygen sdiff HEAD ib_send_lat mkfontdir pgawk mysqlbinlog lppasswd dbus-daemon emacs-24.3 nroff locate setup-nsssysinit.sh igawk mlx_fs_dump gsdj tic lsinitrd weather gcov mono-boehm patch sudo ib_read_bw info dump2psl.pl xsetmode jrunscript kdumpctl lslocks gnroff shuf vmstat latex lslogins lua flex++ ssh-keyscan mlxtrace_ext msgattrib signtool rpmverify getent pmieconf ssh-agent xdg-desktop-menu ibdmchk ibnetsplit link gpg-agent pmlogcheck mlxlink_ext dbus-update-activation-environment bc nice raw mlxgearbox pmevent riostream wftopfa aserver mget_temp javadoc unxz ib_send_bw cpp desktop-file-install checksctp ucmatose gpg jsadebugd kpsewhich aria_read_log whereis systemd-tty-ask-password-agent pmerr mysqldump mstfwtrace java dvi2fax ibv_intf tzselect ibv_dctgt fmtutil gsoelim chmem ssh mstmtserver wsdl2 pmdate modutil vncserver pmval pmstore systemd-stdio-bridge paste xdg-email POST pod2text gacutil setpriv mandb lsattr tracepath6 xwd rdma_server desktop-file-validate mget_temp_ext nvidia-modprobe truncate numfmt mlnx_qos xbiff ppc64 lwp-request xgamma rmail mkfifo luac hsc2hs-ghc texconfig-sys systemd-detect-virt secon rebuild-jar-repository sim_client h2ph pminfo f95 bashbug-64 mktemp gneqn sum unbuffer newgrp mlxfwmanager allcm usleep etags ikdasm mac2unix sha384sum wsimport hwloc-patch ofed_info cvtsudoers krb5-config mstfwreset pdfetex dir sprof run_perftest_multi_devices cp ypwhich xset jstack sxpm pmclient chattr run-parts mstconfig gapplication extcheck mlxvpd ghc-pkg eu-elfcompress fribidi fc x11perfcomp logger watchgnupg dtest xeyes csslint-0.6 timeout makedb ibdump chcon aconnect ib_atomic_lat stream icewm-xdg-menu runhaskell msgunfmt lexgrog lsipc expect bashbug xz fmtutil-sys gettext.sh glib-compile-schemas pmstat javah ipcmk pstruct c2ph mtserver luatex cert-sync mlxmdio rdma_xserver pmlogger mountpoint eu-ranlib rmdir hostname pmap ipcalc zipnote lwp-dump pdf2ps gpasswd animate zsh python-config db_deadlock vpi_tcpdump jcmd migratepages resize showrgb captoinfo pax rstream jps ps systemd-cgls db_tuner systemd-inhibit [ ul snice rpmspec wc pod2html timed-read ibdiagnet lwp-download haddock-ghc-7.6.3 cmsutil updmap xvidtune last mlxprivhost top pmdumplog scriptreplay urlgrabber mstprivhost quotasync chgrp touch neqn fc-cat xmag msgen pack200 mount md5sum sudoreplay ps2ps gmake autom4te dircolors sha256sum pre-grohtml tsort getconf eu-elflint texlua db_log_verify fc-scan getopt pmie2col vi tload ibv_task_pingpong atrm gettext dc db_archive rdma_client xorg-x11-fonts-update-dirs fonttosfnt etex pf2afm aplaymidi mcookie jar nslookup setxkbmap ipmitool mlxdump hwloc-ls realpath ps2ascii ksh mlxmcg pdftex lpstat read dbus-send perldoc pkcs1-conv jdeps jstatd kpsexpand lwp-mirror mailq gnuplot kpsepath sort grep-changelog fgrep eu-readelf numastat shcomp sync flock timed-run cvt rpm composite autoheader setfacl db_printlog db_verify zcmp expand kpseaccess xmllint csplit bdftopcf ypdomainname soelim podselect kmod mono-heapviz alsaloop pmlogmv cut nvidia-bug-report.sh xzgrep pinentry lpstat.cups eu-ar dvired nettle-lfib-stream jinfo c89 mono-service runghc hwloc-bind gtf journalctl dbus-binding-tool check-binary-files hwloc-compress-dir icewm-set-gnomewm perf lpoptions msgconv printafm lpr tput keyctl ex bzless sha512sum withsctp ssh-add mesg findmnt gpgconf host agentxtrap umask raw_ethernet_fs_rate fipshmac gdbus mono-sgen-gdb.py gtester-report ibv_dcini lesspipe.sh mysqlshow piconv xload gtk-query-immodules-2.0-64 rmail.postfix dshbak localectl ipcs gex locale db_checkpoint i2c ldd gs arecordmidi msql2mysql autoupdate find chmod amsstat eu-addr2line rpcgen c++filt sndfile-resample hwloc-ps look ibdmtr genpmda curl-config pmprobe rksh pod2man xzcmp mlxfwreset zipgrep utmpdump more gdk-pixbuf-query-loaders-64 tc_wrap.py rmiregistry gpg-connect-agent xfontsel gsnd xkbcomp mprof-report mktextfm namei gsettings numademo mpi-selector-menu view icewmbg gcc-ranlib hesinfo cvs pckt_drop gnuplot-wx objdump mckey chrt unix-lpr.sh nail mlnx_qcn sss_ssh_knownhostsproxy ibv_uc_pingpong envsubst ghci-7.6.3 mkinitrd autoconf eu-unstrip mysqlcheck ipcrm pango-list lsns loginctl otfdump hwloc-diff mysql_waitpid uniq nvidia-xconfig gvimtutor setup-nsssysinit dvipdf wdctl tee killall cabal mcview ldapsearch sg flex runcon xzegrep gpg2 identify tac colcrt pmgenmap font2c nvidia-cuda-mps-server unpack200 readelf mlxi2c hexdump ssltap ibtopodiff cxpm msgcat update-mime-database pmloglabel mono-sgen xcutsel irb pmjson login factor linux32 machinectl lsb_release vimx gio wget troff busctl lastb pmclient_fg native2ascii mono-service2 ibv_srq_pingpong mknod strace sexp-conv time gio-querymodules-64 Mail du dconf mlnx_get_vfs.pl domainname alsabat systemd-tmpfiles strace-log-merge ibv_rc_pingpong python2.7 sleep cmtime pwdx lpunlock eject mdevices_info ifnames sha224sum koi8rxterm sed getopts xlogo mlxuptime newaliases.postfix aseqnet systemd-firstboot xargs nettle-hash python2.7-config ncursesw5-config pcre-config qperf eu-make-debug-archive newaliases chage build-classpath mysqlaccess bzdiff isosize mstmwrite expr pwmake systemd-escape ncurses5-config xsetroot ibnlparse lstopo lessecho autoreconf gslj orbd clear gctags vncpasswd icewm-session atq mysqlimport rpmkeys xxd xhost ibv_asyncwatch wsgen sotruss mstflint run_perftest_loopback watch net-snmp-config msgfilter systemd-hwdb lastlog slogin gconftool-2 ldapdelete test mst_ib_add pkexec zipcloak rsyslog-recover-qi.pl pkaction unix2dos groff shred itrace xmlcatalog texhash systemd-machine-id-setup flint ibdiagnet_csv2xml.py iecset hwloc-annotate eps2eps autoscan grotty colrm bash glib-gettextize yes lz4 epstopdf gpgparsemail spax pr kill bzcmp mlxdump_ext ypmatch ibv_ud_pingpong aria_ftdump w logname ksh93 od xmodmap gpic pmlogsize p11-kit systemd-nspawn m17n-conv bzip2 timedatectl gresource rping infocmp unmunge nl users minit idlj xstdcmap msgmerge a2p csharp mft_uninstall.sh testgdbm gdk-pixbuf-thumbnailer hsc2hs lpq glib-genmarshal tailf quota hca_self_test.ofed id stty update-ca-trust mlxconfig setreg xzfgrep mv fipscheck ftp-rfc disco sqlsharp join xsetpointer ppc rlogin-cwd vimdiff lchfn tr chacl echo netstat texlinks pkla-check-authorization display strip xdg-settings rpdcp mstdump mkpasswd ping6 mlxphyburn pydoc ps2pdf12 jstat gpgv eu-strings pphs eu-elfcmp jobs zfgrep systemd-delta update-gtk-immodules glib-compile-resources gsettings-data-convert pic mlx_fpga dotlockfile gobject-query redhat_lsb_init Xorg import sftp emacsclient raw_ethernet_lat zless aria_pack msgexec false crlutil nvidia-cuda-mps-control oclock dnsdomainname javac pcp mail fwtrace xdpr awk tclsh8.5 gprof xkibitz my_print_defaults rcopy passmass pod2latex freetype-config bzip2recover bdftruncate x0vncserver yum abs2rel geoiplookup pcp2csv build-classpath-directory otfview znew mstmread aplay gvim nvvs ldapmodify nv-hostengine pl2pm javap pango-view ibsim sss_ssh_authorizedkeys hostid create-jar-links mcra zdiff pathchk /usr/local/sbin: /usr/sbin: rhnsd rhn_check spacewalk-channel rhnreg_ks rhn_register rhn-channel rhn-profile-sync subscription-manager userhelper pifconfig pethtool virt-what abrt-install-ccpp-hook abrt-dbus abrt-configuration abrtd abrt-server abrt-auto-reporting vgcfgrestore selabel_digest resize2fs luserdel bootlist fdisk thin_trim e4defrag tracepath pwhistory_helper mkdumprd mke2fs mkfs.ext2 mkfs.ext3 mkfs.ext4 badblocks mii-diag lpc lgroupmod rpc.statd lsdevinfo ibfindnodesusing.pl ifup alsa-info ibdiscover.pl load_policy rtcwake thin_repair usermod xfs_freeze lvs xfs_mdrestore plipconfig groupmod fsck.xfs lsvpd unix_update readprofile vgreduce losetup sshd-keygen update-alternatives rtas_event_decode selabel_lookup_best_match cracklib-check ntptime partx agetty pvdisplay vmcore-dmesg show_irq_affinity_hints.sh mlnx_net_rules kexec cracklib-unpacker lsprop thin_dump alternatives vendor_pre_uninstall.sh yppoll swaplabel lvchange blockdev ibdatacounts dracut useradd zdump alsa-info.sh lparstat ctrlaltdel smpdump ss swapoff swapon zic ipmaddr sys-unconfig sldd.sh iconvconfig.ppc64le iconvconfig tcsd ibhosts dmsetup lid chcpu cache_dump ibchecknode ibroute depmod vgremove pseries_platform nvme getpcaps ppp-watch lscfg cache_repair xfs_logprint postlock serv_config dumpe2fs nvram udevadm parted lsmod tc ntpdate sestatus fsck.minix rpcinfo pmc groupmems srp_daemon.sh iptables-restore pwunconv routel postqueue ls-vdev lpasswd sysctl e2freefrag dmstats capsh sendmail xfs_db pam_timestamp_check chpasswd lvdisplay hwstamp_ctl lnewusers zramctl yptest quotacheck ibdatacounters lvcreate mkdict vgmknodes iptables-save fixfiles set_irq_affinity_cpulist.sh lspci xtables-multi blkdeactivate postlog fsck lsslot xfs_quota rdisc update_flash_nv srp_daemon bridge saquery ibswitches addpart smpquery sss_cache clockdiff ntpdc ypset runlevel sssd build-locale-archive ntpd nfsidmap ipmievd atrun postcat odp_stat.sh lvconvert e2fsck fsck.ext2 fsck.ext3 fsck.ext4 rtstat ibprintrt.pl ifconfig era_dump xfs_growfs sminfo lvmsadc ibclearcounters dmfilemapd restorecon thin_ls ldattach grpconv vendor_post_uninstall.sh ntpq nvsetenv era_check connectx_port_config postconf delpart try-from vpdupdate era_restore avcstat munged snmpd mountstats mklost+found lvmsar ls-veth snmptrapd route ibsrpdm ibstat phc2sys lvresize cracklib-packer new-kernel-pkg fsck.nfs irqbalance logrotate xfs_rtcp rpc.rquotad ibcacheedit genhomedircon genl exportfs xfs_bmap grpck alsactl cache_writeback newusers selabel_partial_match makedumpfile show_gids mlnx_affinity ofed_uninstall.sh vgexport lvmdump nslcd pvresize partprobe set_irq_affinity_bynode.sh show_irq_affinity.sh dump_fts errinjct hardlink matchpathcon fdformat vgextend fsfreeze ofpathname pwck dhclient postdrop sendmail.postfix vgcfgbackup sulogin hack-coff lpc.cups xfs_info ypbind nameif nstat mkfs.cramfs sim_server activate_firmware nfsstat opensm gssproxy ibaddr mkfs.xfs groupadd halt osmtest lvmpolld lsmcode pvs lvremove start-statd debugfs setpci selinuxexeccon ibportstate rtmon ibcheckerrors vgimportclone e2label tune2fs rtas_dump postfix lnstat dump_mfts.sh thin_restore check_lft_balance.pl ibidsverify.pl cma_roce_tos selabel_lookup ip6tables-save rmmod cache_metadata_size nsm run_srp_daemon runuser xfs_metadump getcap sefcontext_compile ip iptables glibc_post_upgrade.ppc64le fsadm iblinkinfo.pl ibqueryerrors.pl setfiles sys_ident dhclient-script tracepath6 findfs getsebool cbq e2image blkdiscard uuserver ifcfg shutdown smtp-source install-info set_nodedesc.sh xfs_repair rsyslogd rpcdebug lvm mkhomedir_helper pvscan logsave pwconv unsquashfs ntp-keygen e2undo blkmapd vgscan osd_login umount.nfs ibcheckerrs rpc.nfsd iblinkinfo ibtracert cfdisk common_irq_affinity.sh modinfo sasldblistusers2 rtpr selinuxconlist wrapper blkid ibclearerrors lvmconf xqmstats vgsplit postsuper thin_check filefrag adduser redhat_lsb_trigger.ppc64le dump_lfts.sh drmgr cache_check crond pvchange vendstat setenforce addgnupghome tcpdmatch reboot vipw rpc.gssd cracklib-format perfquery sln pivot_root create-cracklib-dict quotaon groupdel ptp4l mkfs xfs_estimate dmeventd gss-server usernetctl show_counters xfs_ncheck vgchange grpunconv quotastats iptunnel dkms resizepart sysctl_perf_tuning xfs_mkfile repquota ip6tables-restore lusermod wipefs sshd ifdown cache_restore arp pvremove clock tickadj ldconfig selinuxdefcon lvreduce vigr quot vgdisplay lchage arping ibacm ibcheckportstate smparquery insmod addnote lvmetad ibprintca.pl switch_root hwclock kpartx ifstat sysinfo-snapshot.py setsebool edquota killall5 pidof anacron service sfdisk vgimport vgrename sm-notify lvmdiskscan lvscan selinuxenabled nologin atd accessdb ibcheckstate userdel lsvio ibnodes weak-modules quotaoff setquota era_invalidate automount xfs_copy sosreport consoletype phc_ctl safe_finger ppc64_cpu mlnx_eswitch_set uesensor rpc.mountd ls-vscsi ibsysstat modprobe ibstatus lgroupadd vgs rtacct pdata_tools telinit setup_mr_cache.sh poweroff lsof slattach visudo ibcheckportwidth update-pciids nscd update_flash smtp-sink mkswap sushell lvmconfig mktree xfs_admin ctstat lvrename ibmirror pam_tally2 chkconfig pam_console_apply xfs_io ib2ib_setup nfsdcltrack mksquashfs umount.nfs4 arpd rtas_ibm_get_vpd setcap rtas_dbg chroot ibqueryerrors grubby timemaster ibchecknet installkernel vgmerge rpc.idmapd create-munge-key routef mount.nfs pvmove ip6tables postmulti ibnetdiscover key.dns_resolver request-key alsabat-test.sh genhostid ibswportwatch.pl postmap init ibprintswitch.pl ether-wake ifenslave selinux_restorecon fstrim xfs_fsr packer lgroupdel vgcreate mount.nfs4 ethtool fsck.cramfs postalias lvextend vgconvert saslpasswd2 netreport mkfs.minix cma_roce_mode ibcheckwidth thin_metadata_size faillock thin_rmap ibcheckport pvck postkick ibrouters pvcreate tcpd vgck rpcbind ping6 opal-prd thin_delta mii-tool showmount ibccquery devlink set_irq_affinity.sh ibping nfsiostat mlnx_tune hvcsadmin unix_chkpwd getenforce luseradd set_poweron_time semodule convertquota applygnupgdefaults fuser ibccconfig compat_gid_gen /opt/ibm/flightlog/bin: decoder /opt/ibutils/bin: ibmsquit ibis dump2slvl.pl ibdiagpath IBMgtSim dump2psl.pl ibdmchk mkSimNodeDir ibdiagui ibdiagnet RunSimTest ibdmtr ibtopodiff ibdmsh ibnlparse ibmssh /opt/ibm/spectrum_mpi/jsm_pmix/bin: jsrun jswait jskill query_env export_slurm_env jsm_simulator js_task_info admin jsproxy jslist export_smpi_env jsm stock /opt/puppetlabs/bin: hiera facter puppet facter-ng.bat /usr/lpp/mmfs/bin: mmtrace mmsysmon.py mmnfsfuncs mmcesnfsmonitor mmjob mmdelcallback tsdf tschfileset tslsdisk tslspolicy tslsfs tsdelsnapshot tslsfileset tsnsdaccess tscrsnapshot tslspool tssnapdir tsedquota tsusercmd tslssnapshot tsstatus mmcrnsd tsgetscsiinfo mmqosnice mmsetquota mmdelfileset tsprpreemptabort cleanupkeystonedb mmsdrfsdef.Linux mmcesuserauthcrservice mmdumpfilocks tschdisk tsaddpdisk tsctl tskafkaauth tsdbfs tscheckquota tsfsctl tsrpldisk tschpdisk tsrecgroupserver tscmd tsreclaimspace tscrrecgroup tschstoragepool tsrestripefs tsdefragfs tsfileid tsdsh tsdeldisk tsquotaon tschfs tsdefedquota tsunmount tsdelpdisk tsressnapshot tscrvdisk tsquotaoff tsexpelnode tslsvdisk tscrfs tschmgr tslsrecgroup tslsrecoverygroupevents tsdelvdisk tsnsddiscover tsdefquotaoff tscrfileset tsdelfs tsdbvdisk tsdelfileset tsadddisk tscachectl tsdefquotaon tschcarrier tsauth tslsqos tslspdisk tsnsdrediscover tsremount tsdelrecgroup tschpool tsrepquota tschqos tschrecgroup tsfsck tsdiag tssbrff mmlsfileset mmexectsmcmd mmgetkafkaspecinfo mmfs mmchconfig ces.snap.py mmperfmon tsgetacl clstrwatchcallbacks mmcessmblsconfig tslsattr mmcesmonitord .links mmnfsgrace mmhelp-apolicy mmpmon mmcesnfsdelexport mmchpolicy gui.snap.py tspcache perfmon.snap.py mmsdrquerydef mmlsqos mmxargs tschattr mmclidecode clstrwatchconsumermanager mmfsctl mmpsnap mmccrnv perf.snap.py mmcespnfsip mmnfsnodeback tsimgrestore mmcesuserauthckservice mmchnodeclass pymmcesnfslsexport.py mmdelacl mmumount mmcrnodeclass mmsysmonc tspcacheevict mmexecvfile sshwrap mmgetifconf mmfs-ppc64-rh4 sysmon.snap.py mmimgrestore mmcesobjaccesslinkfset mmchecksubsys mmcesop tspmon mmdefedquota mmdelsnapshot mmreclaimspace mmsysmoncontrol tsspectrumdiscover mmyfields mmchnode mmrestorefs mmcallhome mmexportfs mmcesnfsloadexport tslspool34 mmnfsmonitor mmsnmpagentd30 tsfindinode mmfsfuncs.Linux mmdumpperfdata mmcesobjcrbase mmdsh objmetric_count.py mmauditmount mmcessmblsexport mmdevdiscover mmlsnode mmautoload mmcesnfscrexport mmchnsd mmfileid mmcesnfsfuncs mmcesrecovernode mmsklmconfig mmlsfs mmcollectdebugdata tseditacl tsbuhelper tslinkfileset tspreparedisk mmrpldisk mmdelnode mmceslog mmcrfsc mmcesblockfuncs mmgensymtable mmfsd mmnfsinstall mmdspmsg mmclone mmchfs mmlsdisk mmnfstakeover tsyselect mmnfsup mmcessmbcrexport tsaddrmap mmnetverify mmchpool msgqueue.snap.py mmcesobjlscfg tsrestorefileset mmbuildgpl mmsmbman tsfindname mmcesloadmonitor mmcesobjaccess mmaddcallback mmcesobjpolicyfuncs mmcessmbdelexport msgqueueDaemonManager core.snap.py tsgskkm mmauth mmedquota mmshutdown tsdbmemleakparse mmadquery mmsdrcli mmccr mmcesobjchstoragepolicy mmcesnfschcfg tswatchmonitor mmmigratefs mmputacl mmlscluster commonsnap.py mmcesservice mmadddisk tslsmgr tssbrindex mmafmlocal mmlsperfdata mmnfsuninstall mmcmi mmcesobjs3 tspcachescan mmlsnsd mmchcluster mmunmount mmnfsquorumloss mmcesnetdeladdress mmlsquota mmces pymmcesnfsfuncs.py tsputacl mmchqos tsprshowfence gpfsrunlevel mmimgbackup mmsdrrestore tsqosnice mmsdrserv mmmsgqueue mmcesmmcdelexport mmlinkfileset mmrestoreconfig mmdelnodeclass mmsmbfuncs lxtrace-4.14.0-115.21.2.el7a.ppc64le mmcesobjcfgman mmfixcfg mmcesnfslsexport tsdbmemleak mmaudit mmcesnfslscfg mmsmbsupportedoptions mmafmconfig mmlscallback mmlsmgr tsbackup mmcesminfuncs mmfsmount mmcesmmcchexport tsrestripefile kdump mmimportfs mmcesobjcrring mmnfs mmcommon mmcesnetmvaddress mmsnmpagentd mmcesobjfuncs gui.callhome.py tsbackup33 lxtrace mmsdrfsdef mmsmb mmobj tsprclear mmceshdfsfuncs mmcesnetworkmonitor tspcacheutil mmqos mmlspolicy mmrestripefs mmcessmbfuncs mmaddnode mmblock mmcrfs mmmount tsprreadres tssklmconfig mmnsddiscover mmprotocoltrace mmglobfuncs tsprreadkeys mmnfsdown gpfs.snap object.snap.py mmcesnetaddaddress mmcesobjchcfg mmrsh mmcesobjmr mmeditacl auditConsumerManager mmlsconfig mmsync mmgetacl mmcesuserauthrmservice mmhealth tsdelacl mmremote mmpercentencode mmcloudfuncs daemonize mmcesnfschexport tsclone callhome.snap.py clstrwatchreplaymanager tsnetverify mmstartup mmcachectl mmgskkm mmdefragfs mmsnapdir tsapolicy mmrcmd mmexpelnode mmsdrquery ece.callhome.py mmchdisk mmcesnetdown mmlslicense mmrestripefile mmcrfileset mmnfscleanup kdump-4.14.0-115.21.2.el7a.ppc64le mmlogmsg mmcessmbexportacl mmchlicense mmsetrcmd tsclwatchrules mmdynamicmap tssetquota tsprreserve wftopics mmvaryonvg mmsnmpagentd10 mmbackupconfig mmdefquotaon mmlsattr mmcesfuncs mmfsadm mmcesmmccrexport runmmfs mmafmcmd ccrrestore mmunlinkfileset basicsnap.py mmafmhomeconfig auth.snap.py fab3.snap.py mmuserauth object.callhome.py mmlogsort mmdf mmcesobjcrstoragepolicy mmdefquotaoff mmtracectl mmdump tsprquery mmfsenv mmfsfuncs mmrepquota mmcesdr mmcesnode tslsquota mmdsm mmdelnsd mmnfsinit mmcrsnapshot mmlockf mmcesauthfuncs network.callhome.py mmglobfuncs.Linux tsprinquiry nfs.snap.py mmcesnetlsaddress mmapplypolicy mmdumpkthreads tswatchgpfsconduit mmcessmbchconfig perfmon.callhome.py mmauditpreunmount mmrcp scpwrap mmremotefs tsunlinkfileset mmcrcluster mmnfspreunmount mmcessmbchexport tsauditconsumer mmchattr mmdeldisk mmfsck smb.snap.py mmcesobjdepstoragepolicy mmcheckquota mmprodname mmdelfs mmcallhremote mmgetstate mmcesuserauthlsservice mmcesnetup mmremotecluster tsstarthelper mmcloudgateway mmgetconfdata tschpolicy mmchmgr tsloadikm mmcesnetchaddress mmsmbvalidoptions mmkeyserv mmchfileset mmwatch tsprregister mmstartpolicy hadoop.snap.py mmquotaoff mmcesmonitor mmquotaon msgqueueservicesmonitormanager mmlspool mmlsmount mmccrmonitor mmbackup mmlsnodeclass mmrefresh mmnfsrecovernode mmpercentdecode wftopichk tspcachesnapdiff mmdiag mmlssnapshot mmcesobjlsstoragepolicy mmafmctl mmstatdcallout mmksh sshscpwrap ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:1017) child config.utilities.macosFirewall 0.000005 ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Linux Checking for program /sw/sources/lsf-tools/2.0/summit/bin/gdb...not found Checking for program /sw/summit/xalt/1.2.1/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/bin/gdb...not found Checking for program /sw/summit/gcc/8.1.1/bin/gdb...not found Checking for program /sw/summit/forge/20.0.1/bin/gdb...not found Checking for program /sw/summit/cuda/10.1.243/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/gdb...not found Checking for program /sw/sources/hpss/bin/gdb...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/gdb...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/gdb...not found Checking for program /opt/ibm/csm/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Executing: uname -s stdout: Linux child config.utilities.debuggers 0.016203 ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 15 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.003131 ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000524 ============================================================================================= TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/git...not found Checking for program /sw/summit/xalt/1.2.1/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/bin/git...not found Checking for program /sw/summit/gcc/8.1.1/bin/git...not found Checking for program /sw/summit/forge/20.0.1/bin/git...not found Checking for program /sw/summit/cuda/10.1.243/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/git...not found Checking for program /sw/sources/hpss/bin/git...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/git...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/git...not found Checking for program /opt/ibm/csm/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 1.8.3.1 ============================================================================================= TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/hg...not found Checking for program /sw/summit/xalt/1.2.1/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/bin/hg...not found Checking for program /sw/summit/gcc/8.1.1/bin/hg...not found Checking for program /sw/summit/forge/20.0.1/bin/hg...not found Checking for program /sw/summit/cuda/10.1.243/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/hg...not found Checking for program /sw/sources/hpss/bin/hg...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hg...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hg...not found Checking for program /opt/ibm/csm/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /usr/local/sbin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /opt/ibm/flightlog/bin/hg...not found Checking for program /opt/ibutils/bin/hg...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/hg...not found Checking for program /opt/puppetlabs/bin/hg...not found Checking for program /usr/lpp/mmfs/bin/hg...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/hg...not found child config.sourceControl 0.008190 ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.15.0-651-g79fd416 Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 79fd41609ac05432092d26d7e1a26f0629926855 Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2021-05-29 15:10:53 -0400 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: adams/landau-mass-opt Defined "VERSION_GIT" to ""v3.15.0-651-g79fd416"" Defined "VERSION_DATE_GIT" to ""2021-05-29 15:10:53 -0400"" Defined "VERSION_BRANCH_GIT" to ""adams/landau-mass-opt"" child PETSc.options.petscclone 0.070776 ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set ============================================================================================= Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-summit-opt-gnu-kokkos-notpl-cuda10, ignoring environment: arch-summit-opt-gnu-kokkos-notpl-cuda ============================================================================================= No previous hashfile found Setting hashfile: arch-summit-opt-gnu-kokkos-notpl-cuda10/lib/petsc/conf/configure-hash Deleting configure hash file: arch-summit-opt-gnu-kokkos-notpl-cuda10/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-summit-opt-gnu-kokkos-notpl-cuda10/lib/petsc/conf/configure-hash child PETSc.options.arch 0.024611 ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:39) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-notpl-cuda10" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:85) ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:78) ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-notpl-cuda10/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:98) child PETSc.options.installDir 0.002007 ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000673 ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000920 ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1973) ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:2003) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1943) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1964) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:542) Initialize the compiler and linker flags Initialized CFLAGS to -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Initialized CFLAGS to -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Initialized LDFLAGS to Initialized CUDAFLAGS to -Xcompiler -rdynamic -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Initialized CUDAFLAGS to -Xcompiler -rdynamic -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Initialized LDFLAGS to Initialized HIPFLAGS to Initialized HIPFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to -Wno-deprecated-gpu-targets Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:717) Locate a functional C compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/bin/mpicc...found Defined make macro "CC" to "mpicc" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-5MaXIJ/config.setCompilers/conftest.o -I/tmp/petsc-5MaXIJ/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-5MaXIJ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpicc -c -o /tmp/petsc-5MaXIJ/config.setCompilers/conftest.o -I/tmp/petsc-5MaXIJ/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-5MaXIJ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-5MaXIJ/config.setCompilers/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-5MaXIJ/config.setCompilers/conftest.o ===== Checking linker Executing: mpicc -c -o /tmp/petsc-5MaXIJ/config.setCompilers/conftest.o -I/tmp/petsc-5MaXIJ/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-5MaXIJ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-5MaXIJ/config.setCompilers/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-5MaXIJ/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status: ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-5MaXIJ/config.setCompilers/conftest.o -I/tmp/petsc-5MaXIJ/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-5MaXIJ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-5MaXIJ/config.setCompilers/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-5MaXIJ/config.setCompilers/conftest.o Testing executable /tmp/petsc-5MaXIJ/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-5MaXIJ/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-5MaXIJ/config.setCompilers/conftest Executing: mpicc --version stdout: gcc (GCC) 8.1.1 20180519 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:756) Locate a functional C preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-5MaXIJ/config.setCompilers /tmp/petsc-5MaXIJ/config.setCompilers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:792) Locate a functional CUDA compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-8.1.1/spectrum-mpi-10.3.1.2-20200121-chae23sgwacfeot7vxkpfboz6wao2c33/bin/nvcc...not found Checking for program /sw/summit/gcc/8.1.1/bin/nvcc...not found Checking for program /sw/summit/forge/20.0.1/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/nvcc...found Defined make macro "CUDAC" to "nvcc" ===== Checking compiler Executing: nvcc -c -o /tmp/petsc-5MaXIJ/config.setCompilers/conftest.o -I/tmp/petsc-5MaXIJ/config.setCompilers -Xcompiler -rdynamic -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Wno-deprecated-gpu-targets /tmp/petsc-5MaXIJ/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: /autofs/nccs-svm1_sw/summit/gcc/8.1.1/include/c++/8.1.1/type_traits(347): error: identifier "__ieee128" is undefined /autofs/nccs-svm1_sw/summit/gcc/8.1.1/include/c++/8.1.1/bits/std_abs.h(101): error: identifier "__ieee128" is undefined /autofs/nccs-svm1_sw/summit/gcc/8.1.1/include/c++/8.1.1/bits/std_abs.h(102): error: identifier "__ieee128" is undefined 3 errors detected in the compilation of "/tmp/tmpxft_00017a2a_00000000-6_conftest.cpp1.ii". Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Error testing CUDA compiler: Cannot compile CUDA with nvcc. Deleting "CUDAC" ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- CUDA compiler you provided with -with-cudac=nvcc cannot be found or does not work. Cannot compile CUDA with nvcc. ******************************************************************************* File "/gpfs/alpine/csc314/scratch/adams/petsc/config/configure.py", line 458, in petsc_configure framework.configure(out = sys.stdout) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1339, in configure self.processChildren() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1327, in processChildren self.serialEvaluation(self.childGraph) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1302, in serialEvaluation child.configure() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py", line 2036, in configure self.executeTest(self.checkCUDACompiler) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/base.py", line 138, in executeTest ret = test(*args,**kargs) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py", line 799, in checkCUDACompiler for compiler in self.generateCUDACompilerGuesses(): File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py", line 779, in generateCUDACompilerGuesses raise RuntimeError('CUDA compiler you provided with -with-cudac='+self.argDB['with-cudac']+' cannot be found or does not work.'+'\n'+self.mesg) ================================================================================ Finishing configure run at Sat, 29 May 2021 22:46:59 -0400 ================================================================================